| Sunday, July 15 |
| Registration (8:00 – 9:00a) |
| Tutorials & Workshops (9:00 – 10:30a) | ||
|
Do ontologies work? Barriers and Possibilities to Implement Ontologies in (Health)
Information Systems György Surján, Samson Tu |
OWL Tutorial |
Application Development with Protégé Timothy Redmond |
| Break (10:30 – 11:00a) |
| Tutorials & Workshops (11:00 – 12:30p) | ||
| Do ontologies work? –– continued | OWL Tutorial –– continued |
Ontology Visualization Jennifer Vendetti Slides |
| Lunch (12:30 - 2:00p) |
| Tutorials & Workshops (2:00 - 3:30p) | ||
|
How to Build and Maintain Useful Ontologies Barry Smith |
OWL Tutorial –– continued |
JessTab & JessAgentTab Tutorial Henrik Eriksson, Karl-Heinz Krempels Slides |
| Break (3:30 - 4:00p) |
| Tutorials & Workshops (4:00 - 5:30p) | ||
| How to Build and Maintain Useful Ontologies –– continued |
SWRLTab Tutorial Martin O'Connor |
JessTab Tutorial –– continued |
| Monday, July 16 |
| Registration (8:00 – 9:00a) |
| Session 1: Introduction, Chair: György Surján | ||
| 9:00-9:15a | Introduction, György Surján (National Institute for Strategic Health Research, Budapest, Hungary) Slides |
|
| 9:15-10:15a | Protégé at 20: Taking Stock After Two Decades of Work, Mark Musen (Stanford University, US) | |
| Break (10:15 – 10:40a) |
| Session 2: Applications, Chair: Harith Alani | ||
| 10:40-11:00a | A Protégé Ontology as the Core Component of a BioSense Message Analysis Framework, Cecil O. Lynch, Craig Cunningham, Eric Schripsema (OntoReason, LLC, US), Tim Morris, Barry Rhodes (US Centers for Disease Control and Prevention, US) Abstract : Slides |
|
| 11:00-11:20a | Avoiding the "Inner-Platform Effect" by using Protégé, Ron Schultz (Metavante Image Solutions, US) - (unable to attend) Abstract |
|
| 11:20-11:40a | Applying Semantics (WSDL, WSDL-S, OWL) in Service Oriented Architectures (SOA), Michael Herrmann, Oliver Dalferth (Daimler Chrysler AG, Germany), Muhammad Ahtisham Aslam (Betriebliche Informationssysteme, Universität Leipzig, Germany) Abstract : Slides |
|
| Short Break (11:40 – 11:50a) |
| Session 3: Ontology Search, Chair: Nick Drummond | ||
| 11:50-12:10p | Searching Biomedical Ontologies Based on Content, Harith Alani, Nigel Shadbolt (University of Southampton, UK), Natalya F. Noy, Nigam Shah, Mark Musen (Stanford University, US) Abstract |
|
| 12:10-12:30p | A Protégé Plug-in-Based System to Manage and Query Large Domain Ontologies, E. Jiménez-Ruiz, V. Nebot, R. Berlanga, I. Sanz (Universitat Jaume I, Castellón, Spain), A. Rios (Maat Gknowledge, Valencia, Spain) Abstract : Slides |
|
| Lunch (12:30 – 2:00p) |
| Session 4: Ontologies, Chair: Samson Tu | ||
| 2:00-2:20p | An Ontology Visualization Tool for Indexing DICOM Structured Reporting (SR) Documents, Sonia Mhiri, Sylvie Despres (University of Paris, France) Abstract: Slides |
|
| 2:20-2:40p | Software Engineering Ontology for Software Engineering Knowledge Management in Multi-site Software Development Environment, Pornpit Wongthongtham, Elizabeth Chang (Digital Ecosystems and Business Intelligence Institute, Curtin University, Australia), Ian Sommerville (School of Computer Science, St. Andrews University, UK) Abstract |
|
| 2:40-3:00p | Disease as an example of non-Aristotelian categories, György Surján (National Institute for Strategic Health Research, Budapest, Hungary) Abstract: Slides |
|
| Break (3:00 – 3:30p) |
| Session 5: Document Management & Information Extraction, Chair: Matthew Horridge | ||
| 3:30-3:50p | Two Protégé plug-ins for supporting document-based ontology engineering and ontological annotation at document level, Viktoria Pammer, Peter Scheir, Stefanie Lindstaedt Abstract : Slides |
|
| 3:50-4:10p | "Data-Driven" Ontologies for an Information Extraction System from Polish Mammography Reports, Agnieszka Mykowiecka, Malgorzata Marciniak, Teresa Podsiadly-Marczykowska (Warsaw, Poland) Abstract : Slides |
|
| 4:10-4:30p | Document Management using Protégé, Henrik Eriksson (Department of Computer and Information Science, Linköping University, Linköping, Sweden) Abstract : Slides |
|
| Session 6: Posters and Demos (4:30 – 6:00p) Refreshments will be provided! |
| Tuesday, July 17 |
| Session 7: Keynote, Chair: Mark Musen | ||
| 9:00-10:00a | Ontology-Based Applications in the Age of the Semantic Web, Enrico Motta (Open University, UK) Abstract : Slides |
|
| Break (10:00 – 10:30a) |
| Session 8: Rules & Inference, Chair: Olivier Dameron | ||
| 10:30-10:50a | SWRL Query Tab, Martin O'Connor (Stanford University, US) Abstract : Slides |
|
| 10:50-11:10a | The Protégé-OWL SWRLTab and Temporal Data Mining in Surgery, Guenter Tusch (Stanford University, US & Grand Valley State University, Allendale, Michigan, US), Martin O'Connor, Timothy Redmond, Ravi Shankar, Amar Das (Stanford University, US) Abstract : Slides |
|
| 11:10-11:30a | Integrating Pathway knowledge using Semantic Web technologies, Nigam Shah, Martin O'Connor, Mark Musen (Stanford University, US) Abstract |
|
| 11:30-11:50p | XET Protégé Plug-in Environment, Photchanan Ratanajaipan, Chutiporn Anutariya, (Shinawatra University, Thailand), Vilas Wuwongse (Asian Insititute of Technology, Thailand), Ekawit Nantajeewarawat (Thammasat University, Thailand) (unable to attend) |
|
| Lunch (11:50 – 1:30p) |
| Session 9: Biomedical Applications, Chair: Günter Tusch | ||
| 1:30-1:50p | Build-up of Terminology Services for the European Centre for Disease Prevention and Control (ECDC) - part one: enterprise- and functional-level planning, Lászlo Balkányi, Gergely Héja Abstract |
|
| 1:50-2:10p | Build-up of Terminology Services for the European Centre for Disease Prevention and Control (ECDC) - part two: conceptual engineering, Gergely Héja, Lászlo Balkányi Abstract |
|
| 2:10-2:30p | Bridging Epoch: Mapping Two Clinical Trial Ontologies, Samson W. Tu, Ravi D. Shankar, Martin O'Connor, Amar K. Das (Stanford University, US), Douglas Fridsma (University of Pittsburgh, US), David B. Parrish (The Immune Tolerance Network, Pittsburgh, PA, US) Abstract : Slides |
|
| 2:30-2:50p |
Ontology-Driven Agent Code Generation for Home Care in Protégé, Akos Hajnal,
Gianfranco Pedone, Laszlo Varga (Computer and Automation Research Institute of the Hungarian
Academy of Sciences, Budapest, Hungary) Abstract |
|
| Break (2:50 – 3:20p) |
| Session 10: Ontology Database Integration, Chair: Henrik Eriksson | ||
| 3:20-3:50p | DataMaster - a Plug-in for Importing Schemas and Data from Relational Databases into Protégé, Csongor Nyulas, Martin O'Connor, Samson Tu (Stanford University, US) |
|
| 3:50-4:20p | Importing Spreadsheet data into Protégé: Spreadsheet plug-in, Jay Kola, Alan Rector (University of Manchester, UK) Abstract |
|
| Short Break (4:20 – 4:30p) |
| Session 11: Panel discussion: protege-discussion Live! (4:30 – 5:30p) |
| Conference Banquet (7:30 – 10:30p) |
| Wednesday, July 18 |
| Session 12: Languages & Interoperability, Chair: Natasha Noy | ||
| 9:00-9:20a | Frames and OWL, Templates and Constraints, Interpreters and Compilers, Alan Rector (University of Manchester, UK) Abstract : Slides |
|
| 9:20-9:50a | Automatic generation of consistency constraints for an OWL representation of the FMA, Olivier Dameron, Julie Chabalier (Université de Rennes1, France) Abstract : Slides |
|
| 9:50-10:20a | A Protégé Plug-in Development to Support the NEPOMUK Representational Language, Milena C. Caires, Simon Scerri, Siegried Handschuh (DERI, National University of Ireland, Galway, Ireland), Michael Sintek, Ludger van Elst (German Research Center for Artificial Intelligence (DFKI) GmbH, Kaiserslautern, Germany) Abstract |
|
| Break (10:20 – 10:40a) |
| Session 13: Future of Protégé, Wrap-up, Chair: Alan Rector | ||
| 10:40-11:00a | Semantic ProtégéWiki, Holger Lewen, York Sure, Markus Zondler, Denny
Vrandecic, Markus Krötzsch, (Institut AIFB, Universitaet Karlsruhe, Germany) Abstract |
|
| 11:00-11:20a | The Next-Generation Protégé-OWL Editor and the OWL Toolkit, Matthew Horridge (University of Manchester, UK) Abstract : Slides |
|
| 11:20-11:40a | Collaborative Protégé, Tania Tudorache, Natasha Noy (Stanford University, US) Abstract : Slides |
|
| 11:40-12:00p | The Future of Protégé, Timothy Redmond (Stanford University, US) | |
| 12:00-12:20p | Wrap-up (open discussion), Protégé Staff | |