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      9th Intl. Protégé Conference - July 23-26, 2006 - Stanford, California
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PRESENTATION ABSTRACT BOOKLET




Conference schedule subject to change. Contact the conference organizers with questions (protege-conf-reg at lists dot stanford dot edu).

Sunday - Monday - Tuesday - Wednesday

Sunday / JULY 23 / Venue: James H. Clark Center
8:00-9:00 Registration
9:00-10:30

Tutorial:
Modeling Decision Support for Clinical Guidelines using the SAGE Guideline Workbench and Standard Terminology

Campbell, Tu, Hrabak, Nyman, Glasgow, McClure

Slides

Tutorial:
OWL Tutorial I

Rector, Drummond, Horridge, Wang, Dameron

Slides
Tutorial:
Application Development with Protégé

Redmond, Tudorache, Vendetti

Slides - Part 1
Slides - Part 2
Workshop:
Natural, Semi-Formal, and Formal Ontologies: Bridging the Layers, Limits, and Lacunas

Smith, Conrad, Brooks

Slides
10:30-11:00 Break
11:00-12:30
continued


continued


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12:30-2:00 Lunch
2:00-3:30

Tutorial:
JessTab Tutorial

Eriksson

Slides
Webcast

Tutorial:
Advanced Reasoning with OWL

Rector, Drummond, Horridge, Wang, Dameron

Slides
Tutorial:
Ontology Visualization with Jambalaya

Callendar

Slides

continued

3:30-4:00 Break
4:00-5:30
continued


continued

Tutorial:
Ontology Visualization

Vendetti

Slides

continued



Monday / JULY 24 / Venue: Sherman Fairchild Auditorium
8:00-9:00 Registration
  Session 1: Introduction and Keynote, Chair: Alan Rector
9:00-9:15 Introduction, Mark Musen (Stanford University, US)
9:15-10:15 Ontologies Ontologies Everywhere, but Who Knows What to Think?, Michael Uschold (The Boeing Company, US)
Slides
10:15-10:40 Break
  Session 2: Applications & Requirements, Chair: Amar Das
10:40-11:00 The National Center for Biomedical Ontology, Daniel Rubin (Stanford University, US)
Slides
11:00-11:20 Embracing Change: Financial Informatics and Risk Analytics, Mark Flood (Federal Housing Finance Board, US)
Abstract : Slides : Paper
11:20-11:40 Ontology Based Application Server to Execute Semantic Rich Requests, Dilvan de Abreu Moreira, Flávia Linhalis (University of São Paulo, Brazil)
Abstract : Slides
11:40-12:00 Content Object Modelling with Protégé, Jon Carey, Helen Lippell, David Wood (British Broadcasting Company, UK)
Abstract
12:00-1:00 Lunch
  Session 3: Interoperability, Chair: Christopher Chute
1:00-1:30 Data Driven Ontology Alignment, Nigam Shah (Stanford University, US)
Abstract : Slides
1:30-2:00 Towards Semantic Interoperability in a Clinical Trials Management System, Ravi Shankar (Stanford University, US)
Abstract : Slides
2:00-2:30 Towards Subject-Centric Merging of Ontologies, Jack Park, Patrick Durusau (SRI International, US)
Abstract : Slides
2:30-3:00 Interoperability of Protégé using RDF(S) as Interchange Language, Raúl García-Castro, Asunción Gómez-Pérez (Universidad Politécnica de Madrid, Spain)
Abstract : Slides
3:00-3:30 Break
  Session 4: Ontology Management, Chair: Henrik Eriksson
3:30-4:00 Normalising, Factoring and Modularising OWL Ontologies, Alan Rector (The University of Manchester, UK)
Slides
4:00-4:30 Semantic Versioning Manager: Integrating SemVersion in Protégé, Tudor Groza (DERI, National University of Ireland, Ireland), Max Völkel (FZI, Forschungszentrum Informatik, Germany), Siegfried Handschuh (DERI, National University of Ireland, Ireland)
Abstract : Slides
4:30-6:00 Session 5: Posters and Demos (refreshments provided)
6:00-7:00 Welcome Reception (refreshments provided)

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Tuesday / JULY 25 / Venue: Sherman Fairchild Auditorium
  Session 6: Invited Talk, Chair: Olivier Dameron
9:00-10:00 Do Ontologies Dream of Concepts? – Or: Blank Spots in Ontology Engineering, York Sure (University of Karlsruhe, Germany)
Abstract : Slides
10:00-10:30 Break
  Session 7: Protégé-OWL and its Extensions, Chair: Sherri De Coronado
10:30-11:00 Sequences in Protégé OWL, Nick Drummond, Alan Rector, Robert Stevens (The University of Manchester, UK), Georgina Moulton (Northwest Institute for Bio Health Informatics, Manchester, UK), Matthew Horridge, Hai H. Wang, Julian Seidenberg (The University of Manchester, UK)
Abstract : Slides
11:00-11:30 Frames and OWL Side by Side, Hai Wang, Alan Rector, Nick Drummond, Matthew Horridge, Julian Seidenberg (The University of Manchester, UK) Natasha Noy, Mark Musen, Timothy Redmond, Daniel Rubin, Samson Tu, Tania Tudorache (Stanford University, US)
Abstract : Slides
11:30-12:00 A Mechanism to Define and Execute SWRL Built-ins in Protégé-OWL, Martin O’Connor, Amar Das (Stanford University, US)
Abstract : Slides
12:00-12:30 Integrating Data into an OWL Knowledge Base via the DBOM Protégé Plug-in, Raphäel Squelbut, Olivier Curé (Université de Marne-la-Vallée)
Abstract : Slides
12:30-1:30 Lunch
  Session 8: Biomedical Applications, Chair: Peter Szolovits
1:30-2:00 AVICENA, an Ontology for the Design of Executable Clinical Practice Guidelines, Alfonso Díez, Alberto Cortés, Rafael Gil (BET Value, Spain), Pablo Castells, Fernando Díez, José Fuentes, Álvaro Valera, (Universidad Autónoma de Madrid, Spain)
Abstract : Slides
2:00-2:30 Grading Lung Tumors Using OWL-DL-based Reasoning, Olivier Dameron (Université de Rennes 1, France), Élodie Roques (Université de Rennes 1, France), Daniel Rubin (Stanford University, US), Gwenaëlle Marquet (Université de Rennes 1, France), Anita Burgun (Université de Rennes 1, France)
Abstract : Slides
2:30-3:00 Knowtator: A Plug-in for Creating Training and Evaluation Data Sets for Biomedical Natural Language Systems, Philip Ogren (Mayo Clinic College of Medicine, US)
Abstract : Slides
3:00-3:30 Break
  Session 9: Plug-ins, Chair: Harith Alani
3:30-3:50 Using a Degree-of-Interest Model for Adaptive Visualizations in Protégé, Tricia d’Entremont, Margaret-Anne Storey (University of Victoria, Canada)
Abstract : Slides
3:50-4:10 OntoSphere3D: a Multidimensional Visualization Tool for Ontologies, Alessio Bosca, Dario Bonino (Politecnico di Torino, Italy)
Abstract : Slides
4:10-4:30 Cognitive Support for an Argumentative Structure during the Ontology Development Process, Alexander Garcia Castro (International Center for Tropical Agriculture, Institute for Molecular Bioscience, Australian Center for Plant Functional Genomics, ARC Centre in Bioinformatics, Australia), Angela Norena (Javeriana University, Colombia), Andres Betancourt (Javeriana University, Colombia), Mark Ragan (Institute for Molecular Bioscience, ARC Centre in Bioinformatics, Australia)
Abstract
4:30-4:50 A PDF Storage Backend for Protégé, Henrik Eriksson (Linköping University, Sweden)
Abstract : Slides
4:50-5:00 Break
5:00-6:00 Session 10: Panel discussion: protege-discussion Live!
7:00-9:30 Conference Dinner - Buca di Beppo - Southern Italian Family Dining

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Wednesday / JULY 26 / Venue: Sherman Fairchild Auditorium
  Session 11: Ontology Evaluation, Chair: York Sure
9:00-9:30 Content-based Ontology Ranking, Matthew Jones, Harith Alani (University of Southampton, UK)
Abstract : Slides
9:30-10:00 A Consumer Ontology Analysis Tool, Valerie Cross, Anindita Pal (Miami University - Ohio, US)
Abstract : Slides
10:00-10:30 Break
10:30-11:00 Argumentative Support as Annotation in Ontologies, Ravi Tiruvury (Stanford University, US)
Abstract
11:00-11:30 Lessons Learned From Ontology Design, Jean-André Benvenuti (Écoles de Saint-Cyr Cotquidan, France), Laure Berti-Équille (Université de Rennes 2, France), Éric Jacopin (Écoles de Saint-Cyr Cotquidan, France)
Abstract : Slides
  Session 12: Future of Protégé, Wrap-up
11:30-12:30 Future of Protégé, Wrap-up (open discussion), Timothy Redmond (Stanford University, US)
Slides

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