| Sunday / JULY 23 / Venue: James H. Clark Center | ||||
| 8:00-9:00 | Registration | |||
| 9:00-10:30 |
Tutorial: |
Tutorial: OWL Tutorial I Rector, Drummond, Horridge, Wang, Dameron Slides |
Tutorial: Application Development with Protégé Redmond, Tudorache, Vendetti Slides - Part 1 Slides - Part 2 |
Workshop: Natural, Semi-Formal, and Formal Ontologies: Bridging the Layers, Limits, and Lacunas Smith, Conrad, Brooks Slides |
| 10:30-11:00 | Break | |||
| 11:00-12:30 | continued |
continued |
continued |
continued |
| 12:30-2:00 | Lunch | |||
| 2:00-3:30 |
Tutorial: |
Tutorial: Advanced Reasoning with OWL Rector, Drummond, Horridge, Wang, Dameron Slides |
Tutorial: Ontology Visualization with Jambalaya Callendar Slides |
continued |
| 3:30-4:00 | Break | |||
| 4:00-5:30 | continued |
continued |
Tutorial: Ontology Visualization Vendetti Slides |
continued |
| Monday / JULY 24 / Venue: Sherman Fairchild Auditorium | ||||
| 8:00-9:00 | Registration | |||
| Session 1: Introduction and Keynote, Chair: Alan Rector | ||||
| 9:00-9:15 | Introduction, Mark Musen (Stanford University, US) | |||
| 9:15-10:15 | Ontologies Ontologies Everywhere, but Who Knows What to Think?, Michael Uschold (The Boeing Company, US) Slides |
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| 10:15-10:40 | Break | |||
| Session 2: Applications & Requirements, Chair: Amar Das | ||||
| 10:40-11:00 | The National Center for Biomedical Ontology,
Daniel Rubin (Stanford University, US) Slides |
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| 11:00-11:20 | Embracing Change: Financial Informatics and Risk Analytics,
Mark Flood (Federal Housing Finance Board, US) Abstract : Slides : Paper |
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| 11:20-11:40 | Ontology Based Application Server to Execute Semantic Rich Requests,
Dilvan de Abreu Moreira, Flávia Linhalis (University of São Paulo, Brazil) Abstract : Slides |
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| 11:40-12:00 | Content Object Modelling with Protégé,
Jon Carey, Helen Lippell, David Wood (British Broadcasting Company, UK) Abstract |
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| 12:00-1:00 | Lunch | |||
| Session 3: Interoperability, Chair: Christopher Chute | ||||
| 1:00-1:30 | Data Driven Ontology Alignment,
Nigam Shah (Stanford University, US) Abstract : Slides |
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| 1:30-2:00 | Towards Semantic Interoperability in a Clinical Trials Management System,
Ravi Shankar (Stanford University, US) Abstract : Slides |
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| 2:00-2:30 | Towards Subject-Centric Merging of Ontologies,
Jack Park, Patrick Durusau (SRI International, US) Abstract : Slides |
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| 2:30-3:00 |
Interoperability of Protégé using RDF(S) as Interchange Language,
Raúl García-Castro, Asunción Gómez-Pérez (Universidad Politécnica de Madrid, Spain) Abstract : Slides |
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| 3:00-3:30 | Break | |||
| Session 4: Ontology Management, Chair: Henrik Eriksson | ||||
| 3:30-4:00 | Normalising, Factoring and Modularising OWL Ontologies,
Alan Rector (The University of Manchester, UK) Slides |
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| 4:00-4:30 | Semantic Versioning Manager:
Integrating SemVersion in Protégé,
Tudor Groza (DERI, National University of Ireland, Ireland),
Max Völkel (FZI, Forschungszentrum Informatik, Germany),
Siegfried Handschuh (DERI, National University of Ireland, Ireland) Abstract : Slides |
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| 4:30-6:00 | Session 5: Posters and Demos (refreshments provided) | |||
| 6:00-7:00 | Welcome Reception (refreshments provided) | |||
| Tuesday / JULY 25 / Venue: Sherman Fairchild Auditorium | ||||
| Session 6: Invited Talk, Chair: Olivier Dameron | ||||
| 9:00-10:00 | Do Ontologies Dream of Concepts? – Or: Blank Spots in Ontology Engineering,
York Sure (University of Karlsruhe, Germany) Abstract : Slides |
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| 10:00-10:30 | Break | |||
| Session 7: Protégé-OWL and its Extensions, Chair: Sherri De Coronado | ||||
| 10:30-11:00 | Sequences in Protégé OWL,
Nick Drummond, Alan Rector, Robert Stevens (The University of Manchester, UK), Georgina Moulton (Northwest Institute for Bio Health Informatics, Manchester, UK), Matthew Horridge, Hai H. Wang, Julian Seidenberg (The University of Manchester, UK) Abstract : Slides |
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| 11:00-11:30 | Frames and OWL Side by Side,
Hai Wang, Alan Rector, Nick Drummond, Matthew Horridge, Julian Seidenberg (The University of Manchester, UK) Natasha Noy, Mark Musen, Timothy Redmond, Daniel Rubin,
Samson Tu, Tania Tudorache (Stanford University, US) Abstract : Slides |
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| 11:30-12:00 | A Mechanism to Define and Execute SWRL Built-ins in Protégé-OWL,
Martin O’Connor, Amar Das (Stanford University, US) Abstract : Slides |
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| 12:00-12:30 | Integrating Data into an OWL Knowledge Base via the DBOM Protégé Plug-in,
Raphäel Squelbut, Olivier Curé (Université de Marne-la-Vallée) Abstract : Slides |
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| 12:30-1:30 | Lunch | |||
| Session 8: Biomedical Applications, Chair: Peter Szolovits | ||||
| 1:30-2:00 | AVICENA, an Ontology for the Design of Executable Clinical Practice Guidelines,
Alfonso Díez, Alberto Cortés, Rafael Gil (BET Value, Spain), Pablo Castells, Fernando Díez, José Fuentes, Álvaro Valera, (Universidad Autónoma de Madrid, Spain) Abstract : Slides |
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| 2:00-2:30 | Grading Lung Tumors Using OWL-DL-based Reasoning,
Olivier Dameron (Université de Rennes 1, France), Élodie Roques (Université de Rennes 1, France),
Daniel Rubin (Stanford University, US), Gwenaëlle Marquet (Université de Rennes 1, France),
Anita Burgun (Université de Rennes 1, France) Abstract : Slides |
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| 2:30-3:00 | Knowtator: A Plug-in for Creating Training and Evaluation Data Sets for Biomedical Natural Language Systems,
Philip Ogren (Mayo Clinic College of Medicine, US) Abstract : Slides |
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| 3:00-3:30 | Break | |||
| Session 9: Plug-ins, Chair: Harith Alani | ||||
| 3:30-3:50 | Using a Degree-of-Interest Model for Adaptive Visualizations in Protégé,
Tricia d’Entremont, Margaret-Anne Storey (University of Victoria, Canada) Abstract : Slides |
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| 3:50-4:10 | OntoSphere3D: a Multidimensional Visualization Tool for Ontologies,
Alessio Bosca, Dario Bonino (Politecnico di Torino, Italy) Abstract : Slides |
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| 4:10-4:30 | Cognitive Support for an Argumentative Structure during the Ontology Development Process,
Alexander Garcia Castro (International Center for Tropical Agriculture, Institute for Molecular Bioscience,
Australian Center for Plant Functional Genomics, ARC Centre in Bioinformatics, Australia),
Angela Norena (Javeriana University, Colombia), Andres Betancourt (Javeriana University, Colombia), Mark Ragan (Institute for Molecular Bioscience, ARC Centre in Bioinformatics, Australia) Abstract |
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| 4:30-4:50 | A PDF Storage Backend for Protégé,
Henrik Eriksson (Linköping University, Sweden) Abstract : Slides |
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| 4:50-5:00 | Break | |||
| 5:00-6:00 | Session 10: Panel discussion: protege-discussion Live! |
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| 7:00-9:30 | Conference Dinner - Buca di Beppo - Southern Italian Family Dining | |||
| Wednesday / JULY 26 / Venue: Sherman Fairchild Auditorium | |
| Session 11: Ontology Evaluation, Chair: York Sure | |
| 9:00-9:30 | Content-based Ontology Ranking,
Matthew Jones, Harith Alani (University of Southampton, UK) Abstract : Slides |
| 9:30-10:00 | A Consumer Ontology Analysis Tool,
Valerie Cross, Anindita Pal (Miami University - Ohio, US) Abstract : Slides |
| 10:00-10:30 | Break |
| 10:30-11:00 | Argumentative Support as Annotation in Ontologies,
Ravi Tiruvury (Stanford University, US) Abstract |
| 11:00-11:30 | Lessons Learned From Ontology Design,
Jean-André Benvenuti (Écoles de Saint-Cyr Cotquidan, France),
Laure Berti-Équille (Université de Rennes 2, France),
Éric Jacopin (Écoles de Saint-Cyr Cotquidan, France) Abstract : Slides |
| Session 12: Future of Protégé, Wrap-up | |
| 11:30-12:30 |
Future of Protégé, Wrap-up (open discussion), Timothy Redmond (Stanford University, US) Slides |