Tuesday, June 23 |
Registration (8:00 - 9:00a) |
Break (10:30 - 11:00a) |
Tutorials & Workshops (11:00 - 12:30p) | ||
Introduction to OWL
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Properties and Individuals in OWL...
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Challenges of Developing and Deploying...
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Lunch (12:30 - 2:00p) |
Tutorials & Workshops (2:00 - 3:30p) | ||
Introduction to OWL
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Understanding and Repairing Inferences
Horridge |
Collaborative Ontology Development with Protégé Tudorache, Vendetti, Noy, Redmond Slides |
Break (3:30 - 4:00p) |
Tutorials & Workshops (4:00 - 5:30p) | ||
SWRLTab Tutorial O'Connor Slides |
Developing Protégé 4 Plug-ins Drummond, Horridge, Redmond |
JessTab Tutorial Eriksson Slides & Sample Code |
Wednesday, June 24 |
Registration (8:00 - 9:00a) |
Session 1: Introduction | ||
9:00-9:15a | Introduction, Ronald Cornet (Universiteit van Amsterdam, Netherlands) Presentation Slides |
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9:15-10:15a | State of Protégé, Mark Musen (Stanford University, USA) Presentation Slides |
Break (10:15 - 10:40a) |
Session 2: Collaboration and the Web | ||
10:40-11:00a |
Ideas for Collaborative Ontology Development on the Upcoming Web 3.0,
Matthias Loskyll (Saarland University, Germany) Abstract, Presentation Slides |
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11:00-11:20a | Hands-on experiences in concurrent ontology building with Collaborative Protégé,
Daniel Schober (University Clinic, Freiburg, Germany) Abstract, Presentation Slides |
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11:20-11:40a | WebProtégé – Protégé going Web,
Tania Tudorache (Stanford University, USA) Abstract, Presentation Slides |
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11:40-12:00p | Building Web Applications with Protégé,
Csongor Nyulas (Stanford University, USA) Abstract, Presentation Slides |
Lunch (12:00 - 1:30p) |
Session 3: Applications | ||
1:30-1:50p | NCBO BioPortal: A Web Repository for Biomedical Ontologies and Data Resources,
Natasha Noy (Stanford University, USA) Abstract |
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1:50-2:10p | User Experience, Ambient Intelligence,
and Virtual Reality in an Industrial Maintenance Domain using Protégé,
Carlos Toro (VICOMTech, Spain) Abstract, Presentation Slides |
Short Break (2:10 - 2:20p) |
Session 4: Terminology: Curation and Quality Assurance | ||
2:20-2:40p | Protégé 3.4 Plug-in for Editing and Maintaining the NCI Thesaurus,
Sherri de Coronado (National Cancer Institute, USA) Abstract, Presentation Slides |
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2:40-3:00p | Term Analysis for Ontology Quality Assurance,
Karin Verspoor (University of Colorado Denver, USA) Abstract, Presentation Slides |
Short Break (3:00 - 3:10p) |
Session 5: Quick demos | ||
3:10-4:10p | Quick demos |
Short Break (4:10 - 4:30p) |
Session 6: Posters and Demos (4:30 - 6:00p) Refreshments will be provided! |
Conference Banquet (7:30 - 10:30p) |
Thursday, June 25 |
Session 7: Invited Talk | ||
9:00-10:00a | Guus Schreiber (VU University Amsterdam, Netherlands) Presentation Slides |
Break (10:00 - 10:30a) |
Session 8: Biomedical Applications | ||
10:30-10:50a | Utilizing NCBO Tools to Develop an ECG Ontology,
Steven Granite (Johns Hopkins University, USA) Abstract, Presentation Slides |
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10:500-11:10a | OCRe: An Ontology of Clinical Research,
Samson W. Tu (Stanford University, USA) Abstract, Presentation Slides |
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11:10-11:30a | Translation Protégé Knowledge for Executing Clinical Guidelines,
Jeong Ah Kim (Kandong University, Korea) Abstract, Presentation Slides |
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11:30-11:50p | Quantitative Cross-Species Comparison of GO Annotations:
Advantages and Limitations of Semantic Similarity Measure,
Olivier Dameron (Universite de Rennes, France) Abstract, Presentation Slides |
Lunch (11:50 - 1:30p) |
Session 9: Tool and Extensions | ||
1:30-1:50p | A Reasoning Broker Framework for Protégé,
Jürgen Bock (University of Karlsruhe, Germany) Abstract, Presentation Slides |
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1:50-2:10p | A Protégé 4 Backend for Native OWL Persistence,
Joachim Kleb (University of Karlsruhe, Germany) Abstract, Presentation Slides |
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2:10-2:30p | Multi-view Ontology Visualization,
Julia Dmitrieva (Universiteit Leiden, Netherlands) Abstract |
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2:30-2:50p | Simulation Modeling using Protégé,
Henrik Eriksson (Linköping University, Sweden) Abstract, Presentation Slides |
Break (2:50 - 3:20p) |
Session 10: More Tools and Extensions | ||
3:20-3:40p | OLS2OWL – A Repository Management Facility,
Alexander García-Castro (Bremen University, Germany) Abstract |
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3:40-4:00p | Importing Data into Protégé-OWL ,
Martin O'Connor (Stanford University, US) Abstract, Presentation Slides |
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4:00-4:20p | Exploring Microarray Time Series with Protégé,
Guenter Tusch (Grand Valley State University, USA) Abstract |
Short Break (4:20 - 4:30p) |
Session 11: Panel discussion: protege-discussion Live! (4:30 - 5:30p) |
Friday, June 26 |
Session 12: Invited Talk | ||
9:00-10:00a | Frank van Harmelen (VU University Amsterdam, Netherlands) Presentation Slides |
Break (10:00 - 10:20a) |
Session 13: Privacy, Meta-models, and the Future | ||
10:20-10:40a | Ontology-Based Privacy Compliance on European Health Domains,
Hanene Boussi Rahmouni (Bristol Institute of Technology, UK) Abstract |
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10:40-11:00a | Reasoning about Access-Control-Situations with OWL,
Timothy Redmond (Stanford University, USA) Abstract |
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11:00-11:20a | Integrating Ontology Models and Conceptual Models using a Meta Modeling Approach,
Hans-Georg Fill (University of Vienna, Austria) Abstract, Presentation Slides |
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11:20-11:40a | MESAM: A Protégé Plug-in for the Specialization of Models,
Nadjet Zemirline (SUPELEC, France) Abstract, Presentation Slides |
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11:40-12:00p | The Future of Protégé, Timothy Redmond (Stanford University, US) | |
12:00-12:20p | Wrap-up (open discussion), Protégé Staff |