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A B C D E F G H I J K L M N O P Q R S T U V W X Y Z _

## A

abort() - Method in class edu.stanford.smi.protege.util.ExclusiveRunnable
  Sets the aborted flag for the current runnable.
abortCompleteCache() - Method in class edu.stanford.smi.protege.server.update.DeferredOperationCache
abortCompleteCache() - Method in interface edu.stanford.smi.protege.util.transaction.cache.Cache
abortCompleteCache() - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.BasicCache
abortCompleteCache() - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.CompleteableCache
abortCompleteCache() - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.InvalidatableCache
abortCompleteCache() - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.ReadCommittedCache
abortCompleteCache() - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.ReadUncommittedCache
abortCompleteCache() - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.RepeatableReadCache
ABOUT_APPLICATION_DIALOG_TITLE - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
ABOUT_PLUGINS_DIALOG_TITLE - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
AboutBox - Class in edu.stanford.smi.protege.ui
  Panel to display for the "About Box" menu item.
AboutBox(URL, Dimension) - Constructor for class edu.stanford.smi.protege.ui.AboutBox
AboutPluginsBox - Class in edu.stanford.smi.protege.ui
AboutPluginsBox() - Constructor for class edu.stanford.smi.protege.ui.AboutPluginsBox
ABSTRACT - Static variable in class edu.stanford.smi.protege.model.RoleConstraint
ABSTRACT - Static variable in interface edu.stanford.smi.protege.storage.clips.ParserConstants
  RegularExpression Id.
ABSTRACT_MODE - Static variable in class edu.stanford.smi.protege.code.generator.wrapping.ProjectBasedJavaCodeGeneratorOptions
AbstractBackendExportPlugin - Class in edu.stanford.smi.protege.plugin
  TODO Class Comment
AbstractBackendExportPlugin(String) - Constructor for class edu.stanford.smi.protege.plugin.AbstractBackendExportPlugin
AbstractClsWidget - Class in edu.stanford.smi.protege.widget
  Base class for all ClsWidgets.
AbstractClsWidget() - Constructor for class edu.stanford.smi.protege.widget.AbstractClsWidget
AbstractCreateProjectPlugin - Class in edu.stanford.smi.protege.plugin
AbstractCreateProjectPlugin(String) - Constructor for class edu.stanford.smi.protege.plugin.AbstractCreateProjectPlugin
AbstractDatabaseFrameDb - Class in edu.stanford.smi.protege.storage.database
AbstractDatabaseFrameDb() - Constructor for class edu.stanford.smi.protege.storage.database.AbstractDatabaseFrameDb
AbstractEvent - Class in edu.stanford.smi.protege.util
  Base class for all events.
AbstractEvent(Object, int) - Constructor for class edu.stanford.smi.protege.util.AbstractEvent
AbstractEvent(Object, int, Object) - Constructor for class edu.stanford.smi.protege.util.AbstractEvent
AbstractEvent(Object, int, Object, Object) - Constructor for class edu.stanford.smi.protege.util.AbstractEvent
AbstractEvent(Object, int, Object, Object, Object) - Constructor for class edu.stanford.smi.protege.util.AbstractEvent
AbstractExportPlugin - Class in edu.stanford.smi.protege.plugin
  TODO Class Comment
AbstractExportPlugin(String) - Constructor for class edu.stanford.smi.protege.plugin.AbstractExportPlugin
AbstractFacetConstraint - Class in edu.stanford.smi.protege.model
  Base class for implementions of FacetConstraint.
AbstractFacetConstraint() - Constructor for class edu.stanford.smi.protege.model.AbstractFacetConstraint
AbstractFormatter - Class in edu.stanford.smi.protege.util
  TODO Class Comment
AbstractFormatter() - Constructor for class edu.stanford.smi.protege.util.AbstractFormatter
AbstractFrameStore - Class in edu.stanford.smi.protege.model.framestore
AbstractFrameStore(String) - Constructor for class edu.stanford.smi.protege.model.framestore.AbstractFrameStore
AbstractFrameStore() - Constructor for class edu.stanford.smi.protege.model.framestore.AbstractFrameStore
AbstractFrameStoreInvocationHandler - Class in edu.stanford.smi.protege.model.framestore
AbstractFrameStoreInvocationHandler() - Constructor for class edu.stanford.smi.protege.model.framestore.AbstractFrameStoreInvocationHandler
AbstractImportExportSpecification - Class in edu.stanford.smi.protege.plugin
  TODO Class Comment
AbstractImportExportSpecification(Plugin, String) - Constructor for class edu.stanford.smi.protege.plugin.AbstractImportExportSpecification
AbstractKnowledgeBaseFactory - Class in edu.stanford.smi.protege.model
AbstractKnowledgeBaseFactory() - Constructor for class edu.stanford.smi.protege.model.AbstractKnowledgeBaseFactory
AbstractListWidget - Class in edu.stanford.smi.protege.widget
  Common functionality for widgets which are composed of a list box in a labeled component
AbstractListWidget() - Constructor for class edu.stanford.smi.protege.widget.AbstractListWidget
AbstractPlugin - Class in edu.stanford.smi.protege.plugin
AbstractPlugin() - Constructor for class edu.stanford.smi.protege.plugin.AbstractPlugin
AbstractProjectPlugin - Class in edu.stanford.smi.protege.plugin
AbstractProjectPlugin() - Constructor for class edu.stanford.smi.protege.plugin.AbstractProjectPlugin
AbstractRefreshableServerPanel - Class in edu.stanford.smi.protege.server.admin
AbstractRefreshableServerPanel(RemoteServer, RemoteSession) - Constructor for class edu.stanford.smi.protege.server.admin.AbstractRefreshableServerPanel
AbstractSelectableComponent - Class in edu.stanford.smi.protege.util
  Base class implementation for the `Selectable` interface.
AbstractSelectableComponent() - Constructor for class edu.stanford.smi.protege.util.AbstractSelectableComponent
AbstractSlotWidget - Class in edu.stanford.smi.protege.widget
  Base class for all SlotWidgets.
AbstractSlotWidget() - Constructor for class edu.stanford.smi.protege.widget.AbstractSlotWidget
AbstractTableWidget - Class in edu.stanford.smi.protege.widget
  Base class for all widgets which are predominately a JTable.
AbstractTableWidget() - Constructor for class edu.stanford.smi.protege.widget.AbstractTableWidget
AbstractTabWidget - Class in edu.stanford.smi.protege.widget
  Base class for all TabWidgets.
AbstractTabWidget() - Constructor for class edu.stanford.smi.protege.widget.AbstractTabWidget
AbstractTreeWidget - Class in edu.stanford.smi.protege.widget
  Convenience base class for slot widgets that contain a JTree.
AbstractTreeWidget() - Constructor for class edu.stanford.smi.protege.widget.AbstractTreeWidget
AbstractValidatableComponent - Class in edu.stanford.smi.protege.util
  Base class to match up the `Validatable` interface to a swing JComponent
AbstractValidatableComponent() - Constructor for class edu.stanford.smi.protege.util.AbstractValidatableComponent
AbstractWidget - Class in edu.stanford.smi.protege.widget
  Abstract class that implements many of the common "widget" methods.
AbstractWidget() - Constructor for class edu.stanford.smi.protege.widget.AbstractWidget
AbstractWrappedInstance - Class in edu.stanford.smi.protege.code.generator.wrapping
AbstractWrappedInstance(Instance) - Constructor for class edu.stanford.smi.protege.code.generator.wrapping.AbstractWrappedInstance
AbstractWrappedInstance() - Constructor for class edu.stanford.smi.protege.code.generator.wrapping.AbstractWrappedInstance
accept() - Method in class edu.stanford.smi.protege.server.util.ZipServerSocket
accept(File) - Method in class edu.stanford.smi.protege.util.ExtensionFilter
ACCESS - Static variable in interface edu.stanford.smi.protege.storage.clips.ParserConstants
  RegularExpression Id.
accessFacet(Cls, Slot) - Method in class edu.stanford.smi.protege.storage.clips.Parser
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protege.action.ArchiveProject
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protege.action.AutosynchronizeTrees
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protege.action.BrowseForFile
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protege.action.BuildProject
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protege.action.CascadeWindows
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protege.action.ChangeIncludedProjects
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protege.action.ChangeProjectStorageFormat
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protege.action.Clear
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protege.action.CloseAllWindows
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protege.action.CloseCurrentView
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protege.action.CloseProject
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protege.action.ConfigureArchive
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protege.action.ConfigureProject
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protege.action.ConvertUnicodeSequenceAction
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protege.action.Copy
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protege.action.CreateProject
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protege.action.Cut
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protege.action.DecreaseFontSize
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protege.action.DetachCurrentView
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protege.action.DisplayHtml
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protege.action.ExitApplication
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protege.action.ExportPluginAction
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protege.action.ExportToCsvAction
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protege.action.ImportPluginAction
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protege.action.IncludeProject
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protege.action.IncreaseFontSize
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protege.action.InsertUnicodeCharacterAction
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protege.action.JFrameToFront
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protege.action.LookAndFeelAction
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protege.action.MakeCopiesAction
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protege.action.ManageIncludedProjectsAction
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protege.action.MergeIncludedProjects
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protege.action.OpenProject
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protege.action.OpenRemoteProject
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protege.action.Paste
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protege.action.PlasticLookAndFeelAction
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protege.action.RedoAction
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protege.action.ReferencersAction
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protege.action.RevertProject
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protege.action.SaveProject
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protege.action.SaveProjectAs
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protege.action.SaveProjectToFormat
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protege.action.SetPreferences
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protege.action.ShowAboutBox
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protege.action.ShowAboutPluginsBox
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protege.action.ShowCommandHistoryAction
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protege.action.ShowEncodingAndLocales
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protege.action.ShowIconDialog
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protege.action.ShowIncludedProjects
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protege.action.ShowMetrics
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protege.action.SynchronizeTrees
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protege.action.UndoAction
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protege.code.generator.wrapping.JavaCodeGeneratorAction
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protege.ui.ConfigureAction
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protege.util.AddAction
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protege.util.CreateAction
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protege.util.DeleteAction
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protege.util.RemoveAction
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protege.util.SwitchableActionListener
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protege.util.ViewAction
add(String, Class<?>, Class<?>) - Static method in class edu.stanford.smi.protege.code.generator.wrapping.OntologyJavaMappingUtil
add(Command) - Method in class edu.stanford.smi.protege.model.framestore.undo.MacroCommand
add(JMenu) - Method in class edu.stanford.smi.protege.ui.ProjectMenuBar
add(int, Object) - Method in class edu.stanford.smi.protege.util.HashList
  Deprecated. Inserts the specified element at the specified position in this list.
add(Object) - Method in class edu.stanford.smi.protege.util.HashList
  Deprecated. Appends the specified element to the end of this list.
add(Object, EventListener) - Method in class edu.stanford.smi.protege.util.ListenerCollection
add_escapes(String) - Method in exception edu.stanford.smi.protege.storage.clips.ParseException
  Used to convert raw characters to their escaped version when these raw version cannot be used as part of an ASCII string literal.
AddAction - Class in edu.stanford.smi.protege.util
  Base class support for the "Add" action available on most widgets.
AddAction(ResourceKey) - Constructor for class edu.stanford.smi.protege.util.AddAction
AddAction(String) - Constructor for class edu.stanford.smi.protege.util.AddAction
AddAction(String, Icon) - Constructor for class edu.stanford.smi.protege.util.AddAction
addActionListener(ActionListener) - Method in class edu.stanford.smi.protege.util.IntegerField
addActiveChildFrameStore(NarrowFrameStore, String) - Method in class edu.stanford.smi.protege.model.framestore.MergingNarrowFrameStore
addActiveFrameStore(NarrowFrameStore) - Method in class edu.stanford.smi.protege.model.framestore.MergingNarrowFrameStore
addActiveFrameStore(NarrowFrameStore, Collection) - Method in class edu.stanford.smi.protege.model.framestore.MergingNarrowFrameStore
addAll(int, Collection) - Method in class edu.stanford.smi.protege.util.HashList
  Deprecated. Inserts all of the elements in the specified collection into this list, starting at the specified position.
addAll(Collection) - Method in class edu.stanford.smi.protege.util.HashList
  Deprecated. Appends all of the elements in the specified collection to the end of this list, in the order that they are returned by the specified collection's iterator.
addAllowedGroupOperations(GroupOperation) - Method in class edu.stanford.smi.protege.server.metaproject.impl.PolicyControlledObjectImpl
addAllowedGroupOperations(GroupOperation) - Method in interface edu.stanford.smi.protege.server.metaproject.PolicyControlledObject
addAllowedOperation(Operation) - Method in interface edu.stanford.smi.protege.server.metaproject.GroupOperation
addAllowedOperation(Operation) - Method in class edu.stanford.smi.protege.server.metaproject.impl.GroupOperationImpl
addButton(Action) - Method in class edu.stanford.smi.protege.ui.HeaderComponent
addButton(Action) - Method in class edu.stanford.smi.protege.ui.ProjectToolBar
addButton(String) - Method in class edu.stanford.smi.protege.ui.ViewSelector
addButton(Action) - Method in class edu.stanford.smi.protege.widget.AbstractListWidget
addButton(Action, boolean) - Method in class edu.stanford.smi.protege.widget.AbstractListWidget
addButton(Action) - Method in class edu.stanford.smi.protege.widget.AbstractTableWidget
addButton(Action, boolean) - Method in class edu.stanford.smi.protege.widget.AbstractTableWidget
addButton(Action) - Method in class edu.stanford.smi.protege.widget.AbstractTreeWidget
addButton(String, String, boolean) - Method in class edu.stanford.smi.protege.widget.ButtonConfigurationPanel
addButton(LabeledComponent, Action) - Method in class edu.stanford.smi.protege.widget.ClsFieldWidget
addButton(LabeledComponent, Action, boolean) - Method in class edu.stanford.smi.protege.widget.InstanceFieldWidget
addButtonConfiguration(Action) - Method in class edu.stanford.smi.protege.widget.AbstractSlotWidget
addButtonConfiguration(Action, boolean) - Method in class edu.stanford.smi.protege.widget.AbstractSlotWidget
addButtonForExistingTab(WidgetDescriptor) - Method in class edu.stanford.smi.protege.ui.ViewSelector
addButtons(Action, LabeledComponent) - Method in class edu.stanford.smi.protege.ui.DirectInstancesList
addButtons(LabeledComponent) - Method in class edu.stanford.smi.protege.ui.SubslotPane
addButtons(LabeledComponent) - Method in class edu.stanford.smi.protege.widget.ClsFieldWidget
addButtons(LabeledComponent, Action) - Method in class edu.stanford.smi.protege.widget.ClsListWidget
addButtons(LabeledComponent) - Method in class edu.stanford.smi.protege.widget.InstanceFieldWidget
addButtons(LabeledComponent) - Method in class edu.stanford.smi.protege.widget.InstanceListWidget
addChangeListener(ChangeListener) - Method in interface edu.stanford.smi.protege.model.CommandManager
addChangeListener(ChangeListener) - Method in class edu.stanford.smi.protege.model.framestore.undo.UndoFrameStore
addChangeListener(ChangeListener) - Method in class edu.stanford.smi.protege.ui.ProjectView
addChangeListener(ChangeListener) - Method in class edu.stanford.smi.protege.util.FileField
addChangeListener(ChangeListener) - Method in class edu.stanford.smi.protege.util.URIField
addCheckBoxMenuItem(JMenu, Action, boolean) - Static method in class edu.stanford.smi.protege.util.ComponentFactory
addChild(X, X) - Method in class edu.stanford.smi.protege.util.Tree
addCls(Cls, Collection, Collection, boolean) - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
addClsListener(ClsListener) - Method in interface edu.stanford.smi.protege.model.Cls
addClsListener(ClsListener) - Method in class edu.stanford.smi.protege.model.DefaultCls
addClsListener(ClsListener) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
addClsListener(Cls, ClsListener) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
addClsListener(ClsListener) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
  Add a listener for class events for all classes
addClsListener(Cls, ClsListener) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
  Add a listener for class events for a particular class
addColumn(JTable, TableCellRenderer) - Static method in class edu.stanford.smi.protege.util.ComponentUtilities
addColumn(JTable, String, TableCellRenderer) - Static method in class edu.stanford.smi.protege.util.ComponentUtilities
addColumn(JTable, TableCellRenderer, TableCellEditor) - Static method in class edu.stanford.smi.protege.util.ComponentUtilities
addColumn(JTable, TableCellRenderer, String, TableCellEditor) - Static method in class edu.stanford.smi.protege.util.ComponentUtilities
addColumn(int, ResourceKey, TableCellRenderer) - Method in class edu.stanford.smi.protege.widget.AbstractTableWidget
addCommittableUpdate(ValueUpdate) - Method in class edu.stanford.smi.protege.server.framestore.Registration
addCustomEntriesToTable(UIDefaults) - Method in class edu.stanford.smi.protege.util.ProtegePlasticTheme
addCustomEvent(AbstractEvent) - Method in class edu.stanford.smi.protege.model.framestore.EventGeneratorFrameStore
addDeletionHook(KnowledgeBase, DeletionHook) - Static method in class edu.stanford.smi.protege.util.DeletionHookUtil
addDirectOwnSlotValue(Frame, Slot, Object) - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
addDirectOwnSlotValues(Frame, Slot, Collection) - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
addDirectSuperclass(Cls) - Method in interface edu.stanford.smi.protege.model.Cls
addDirectSuperclass(Cls) - Method in class edu.stanford.smi.protege.model.DefaultCls
addDirectSuperclass(Cls, Cls) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
addDirectSuperclass(Cls, Cls) - Method in class edu.stanford.smi.protege.model.framestore.ArgumentCheckingFrameStore
addDirectSuperclass(Cls, Cls) - Method in class edu.stanford.smi.protege.model.framestore.ChangeMonitorFrameStore
addDirectSuperclass(Cls, Cls) - Method in class edu.stanford.smi.protege.model.framestore.EventDispatchFrameStore
addDirectSuperclass(Cls, Cls) - Method in class edu.stanford.smi.protege.model.framestore.EventGeneratorFrameStore
addDirectSuperclass(Cls, Cls) - Method in interface edu.stanford.smi.protege.model.framestore.FrameStore
addDirectSuperclass(Cls, Cls) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreAdapter
addDirectSuperclass(Cls, Cls) - Method in class edu.stanford.smi.protege.model.framestore.ModificationRecordFrameStore
addDirectSuperclass(Cls, Cls) - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
addDirectSuperclass(Cls, Cls) - Method in class edu.stanford.smi.protege.model.framestore.TemplateFrameStore
addDirectSuperclass(Cls, Cls) - Method in class edu.stanford.smi.protege.model.framestore.undo.UndoFrameStore
addDirectSuperclass(Cls, Cls) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
addDirectSuperclass(Cls, Cls) - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
addDirectSuperclass(Cls, Cls, RemoteSession) - Method in interface edu.stanford.smi.protege.server.framestore.RemoteServerFrameStore
addDirectSuperclass(Cls, Cls, RemoteSession) - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
addDirectSuperslot(Slot, Slot) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
addDirectSuperslot(Slot) - Method in class edu.stanford.smi.protege.model.DefaultSlot
addDirectSuperslot(Slot, Slot) - Method in class edu.stanford.smi.protege.model.framestore.ArgumentCheckingFrameStore
addDirectSuperslot(Slot, Slot) - Method in class edu.stanford.smi.protege.model.framestore.ChangeMonitorFrameStore
addDirectSuperslot(Slot, Slot) - Method in class edu.stanford.smi.protege.model.framestore.EventDispatchFrameStore
addDirectSuperslot(Slot, Slot) - Method in class edu.stanford.smi.protege.model.framestore.EventGeneratorFrameStore
addDirectSuperslot(Slot, Slot) - Method in interface edu.stanford.smi.protege.model.framestore.FrameStore
addDirectSuperslot(Slot, Slot) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreAdapter
addDirectSuperslot(Slot, Slot) - Method in class edu.stanford.smi.protege.model.framestore.ModificationRecordFrameStore
addDirectSuperslot(Slot, Slot) - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
addDirectSuperslot(Slot, Slot) - Method in class edu.stanford.smi.protege.model.framestore.TemplateFrameStore
addDirectSuperslot(Slot, Slot) - Method in class edu.stanford.smi.protege.model.framestore.undo.UndoFrameStore
addDirectSuperslot(Slot, Slot) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
addDirectSuperslot(Slot) - Method in interface edu.stanford.smi.protege.model.Slot
addDirectSuperslot(Slot, Slot) - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
addDirectSuperslot(Slot, Slot, RemoteSession) - Method in interface edu.stanford.smi.protege.server.framestore.RemoteServerFrameStore
addDirectSuperslot(Slot, Slot, RemoteSession) - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
addDirectTemplateSlot(Slot) - Method in interface edu.stanford.smi.protege.model.Cls
addDirectTemplateSlot(Slot) - Method in class edu.stanford.smi.protege.model.DefaultCls
addDirectTemplateSlot(Cls, Slot) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
addDirectTemplateSlot(Cls, Slot) - Method in class edu.stanford.smi.protege.model.framestore.ArgumentCheckingFrameStore
addDirectTemplateSlot(Cls, Slot) - Method in class edu.stanford.smi.protege.model.framestore.ChangeMonitorFrameStore
addDirectTemplateSlot(Cls, Slot) - Method in class edu.stanford.smi.protege.model.framestore.EventDispatchFrameStore
addDirectTemplateSlot(Cls, Slot) - Method in class edu.stanford.smi.protege.model.framestore.EventGeneratorFrameStore
addDirectTemplateSlot(Cls, Slot) - Method in interface edu.stanford.smi.protege.model.framestore.FrameStore
addDirectTemplateSlot(Cls, Slot) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreAdapter
addDirectTemplateSlot(Cls, Slot) - Method in class edu.stanford.smi.protege.model.framestore.ModificationRecordFrameStore
addDirectTemplateSlot(Cls, Slot) - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
addDirectTemplateSlot(Cls, Slot) - Method in class edu.stanford.smi.protege.model.framestore.TemplateFrameStore
addDirectTemplateSlot(Cls, Slot) - Method in class edu.stanford.smi.protege.model.framestore.undo.UndoFrameStore
addDirectTemplateSlot(Cls, Slot) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
addDirectTemplateSlot(Cls, Slot) - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
addDirectTemplateSlot(Cls, Slot, RemoteSession) - Method in interface edu.stanford.smi.protege.server.framestore.RemoteServerFrameStore
addDirectTemplateSlot(Cls, Slot, RemoteSession) - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
addDirectType(Cls) - Method in class edu.stanford.smi.protege.model.DefaultInstance
addDirectType(Instance, Cls) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
addDirectType(Instance, Cls) - Method in class edu.stanford.smi.protege.model.framestore.ArgumentCheckingFrameStore
addDirectType(Instance, Cls) - Method in class edu.stanford.smi.protege.model.framestore.ChangeMonitorFrameStore
addDirectType(Instance, Cls) - Method in class edu.stanford.smi.protege.model.framestore.EventDispatchFrameStore
addDirectType(Instance, Cls) - Method in class edu.stanford.smi.protege.model.framestore.EventGeneratorFrameStore
addDirectType(Instance, Cls) - Method in interface edu.stanford.smi.protege.model.framestore.FrameStore
addDirectType(Instance, Cls) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreAdapter
addDirectType(Instance, Cls) - Method in class edu.stanford.smi.protege.model.framestore.ModificationRecordFrameStore
addDirectType(Instance, Cls) - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
addDirectType(Instance, Cls) - Method in class edu.stanford.smi.protege.model.framestore.TemplateFrameStore
addDirectType(Instance, Cls) - Method in class edu.stanford.smi.protege.model.framestore.undo.UndoFrameStore
addDirectType(Cls) - Method in interface edu.stanford.smi.protege.model.Instance
addDirectType(Instance, Cls) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
addDirectType(Instance, Cls) - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
addDirectType(Instance, Cls, RemoteSession) - Method in interface edu.stanford.smi.protege.server.framestore.RemoteServerFrameStore
addDirectType(Instance, Cls, RemoteSession) - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
addDirectTypes(Instance, Collection) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
addError(Object) - Method in interface edu.stanford.smi.protege.exception.AmalgamatedException
addError(Object) - Method in exception edu.stanford.smi.protege.exception.AmalgamatedLoadException
addErrors(Collection) - Method in interface edu.stanford.smi.protege.exception.AmalgamatedException
addErrors(Collection) - Method in exception edu.stanford.smi.protege.exception.AmalgamatedLoadException
addEscapes(String) - Static method in error edu.stanford.smi.protege.storage.clips.TokenMgrError
  Replaces unprintable characters by their escaped (or unicode escaped) equivalents in the given string
addFacetListener(FacetListener) - Method in class edu.stanford.smi.protege.model.DefaultFacet
addFacetListener(Facet, FacetListener) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
addFacetListener(FacetListener) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
addFacetListener(FacetListener) - Method in interface edu.stanford.smi.protege.model.Facet
addFacetListener(FacetListener) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
  Add a listener for facet events for all facets
addFacetListener(Facet, FacetListener) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
  Add a listener for facet events for a particular facet
addFirst(Object) - Method in class edu.stanford.smi.protege.util.HashList
  Deprecated. Inserts the given element at the beginning of this list.
addFollowedExprs(Frame, Slot, List) - Method in class edu.stanford.smi.protege.server.framestore.background.FrameCalculator
addFrame(Frame) - Method in interface edu.stanford.smi.protege.model.Storage
addFrame(FrameID, Frame) - Method in class edu.stanford.smi.protege.model.SystemFrames
addFrameListener(FrameListener) - Method in class edu.stanford.smi.protege.model.DefaultFrame
addFrameListener(Frame, FrameListener) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
addFrameListener(FrameListener) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
addFrameListener(FrameListener) - Method in interface edu.stanford.smi.protege.model.Frame
addFrameListener(Frame, FrameListener) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
  add a listener fro frame evnets for a particular frame
addFrameListener(FrameListener) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
  add a listener for frame events for all frames
addGeneralTab(SlotWidget) - Method in class edu.stanford.smi.protege.widget.WidgetConfigurationPanel
addHeaderButton(Action) - Method in class edu.stanford.smi.protege.util.LabeledComponent
addHeaderButtons(LabeledComponent) - Method in class edu.stanford.smi.protege.ui.ClsInverseRelationshipPanel
addHeaderSeparator() - Method in class edu.stanford.smi.protege.util.LabeledComponent
addHeaderToggleButton(Action) - Method in class edu.stanford.smi.protege.util.LabeledComponent
addHook(DeletionHook) - Method in class edu.stanford.smi.protege.model.framestore.DeletionHookFrameStore
addIcon(Icon) - Method in class edu.stanford.smi.protege.util.DefaultRenderer
addInCollection(PolicyControlledObjectCollection) - Method in class edu.stanford.smi.protege.server.metaproject.impl.PolicyControlledObjectImpl
addInCollection(PolicyControlledObjectCollection) - Method in interface edu.stanford.smi.protege.server.metaproject.PolicyControlledObject
addInheritedTemplateSlots(Collection, Cls) - Method in class edu.stanford.smi.protege.widget.TemplateSlotsWidget
addInstance(Instance, String, Cls, boolean) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
  TODO: Implement addInstance
addInstance(Instance, String, Cls, boolean) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
addInstanceListener(InstanceListener) - Method in class edu.stanford.smi.protege.model.DefaultInstance
addInstanceListener(Instance, InstanceListener) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
addInstanceListener(InstanceListener) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
addInstanceListener(InstanceListener) - Method in interface edu.stanford.smi.protege.model.Instance
addInstanceListener(Instance, InstanceListener) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
addInstanceListener(InstanceListener) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
addItem(Object) - Method in class edu.stanford.smi.protege.widget.AbstractListWidget
addItem(Object) - Method in class edu.stanford.smi.protege.widget.InstanceListWidget
addItems(Collection) - Method in class edu.stanford.smi.protege.widget.AbstractListWidget
addItems(Collection) - Method in class edu.stanford.smi.protege.widget.InstanceListWidget
addItemsSent(int) - Method in class edu.stanford.smi.protege.server.framestore.BandWidthPolicy
addItemToWaitList() - Method in class edu.stanford.smi.protege.server.framestore.BandWidthPolicy
addJavaLoadPackage(String) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
addJavaLoadPackage(String) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
  This method requires some background information.
addJavaPackage(String) - Method in interface edu.stanford.smi.protege.model.FrameFactory
addJavaPackage(String) - Method in class edu.stanford.smi.protege.model.framestore.DefaultFrameFactory
addJavaPackageName(String) - Method in class edu.stanford.smi.protege.model.Project
addKnowledgeBaseListener(KnowledgeBaseListener) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
addKnowledgeBaseListener(KnowledgeBaseListener) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
addLargeToggleToolBarButton(JToolBar, Action) - Static method in class edu.stanford.smi.protege.util.ComponentFactory
addLargeToolBarButton(JToolBar, Action) - Static method in class edu.stanford.smi.protege.util.ComponentFactory
addLast(Object) - Method in class edu.stanford.smi.protege.util.HashList
  Deprecated. Appends the given element to the end of this list.
addLayoutComponent(Component, Object) - Method in class edu.stanford.smi.protege.util.ResizingLayout
addLayoutComponent(String, Component) - Method in class edu.stanford.smi.protege.util.ResizingLayout
addListener(Class<?>, Object, EventListener) - Method in class edu.stanford.smi.protege.model.framestore.EventDispatchFrameStore
addListener(Class, Object, EventListener) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreManager
addListener(Collection) - Method in class edu.stanford.smi.protege.widget.InstanceListWidget
addListValue(JList, Object) - Static method in class edu.stanford.smi.protege.util.ComponentUtilities
addListValue(JList, Object, int) - Static method in class edu.stanford.smi.protege.util.ComponentUtilities
addListValue(JList, Object, Comparator) - Static method in class edu.stanford.smi.protege.util.ComponentUtilities
addListValues(JList, Collection) - Static method in class edu.stanford.smi.protege.util.ComponentUtilities
addMainWindowToolBarButton(Action) - Method in class edu.stanford.smi.protege.widget.AbstractTabWidget
addMember(User) - Method in interface edu.stanford.smi.protege.server.metaproject.Group
addMember(User) - Method in class edu.stanford.smi.protege.server.metaproject.impl.GroupImpl
addMenuItem(JMenu, Action) - Static method in class edu.stanford.smi.protege.util.ComponentFactory
addMenuItemNoIcon(JMenu, Action) - Static method in class edu.stanford.smi.protege.util.ComponentFactory
addNotify() - Method in class edu.stanford.smi.protege.ui.EditStringPanel
addNotify() - Method in class edu.stanford.smi.protege.widget.InstanceNameWidget
addNotify() - Method in class edu.stanford.smi.protege.widget.YellowStickyWidget
addOwnFacetValue(Slot, Facet, Object) - Method in class edu.stanford.smi.protege.model.DefaultFrame
addOwnFacetValue(Slot, Facet, Object) - Method in interface edu.stanford.smi.protege.model.Frame
addOwnSlotValue(Slot, Object) - Method in class edu.stanford.smi.protege.model.DefaultFrame
addOwnSlotValue(Frame, Slot, Object) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
  Deprecated. use #addDirectOwnSlotValues
addOwnSlotValue(Slot, Object) - Method in interface edu.stanford.smi.protege.model.Frame
addOwnSlotValue(Frame, Slot, Object) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
addOwnSlotValue(Frame, String, Object) - Static method in class edu.stanford.smi.protege.model.ModelUtilities
addPage(WizardPage) - Method in class edu.stanford.smi.protege.util.Wizard
addProjectListener(ProjectListener) - Method in class edu.stanford.smi.protege.model.Project
addProjectToMRUList(URI) - Static method in class edu.stanford.smi.protege.util.ApplicationProperties
addProjectViewListener(ProjectViewListener) - Method in class edu.stanford.smi.protege.ui.ProjectView
addPropertyValue(PropertyValue) - Method in interface edu.stanford.smi.protege.server.metaproject.GroupOperation
addPropertyValue(PropertyValue) - Method in class edu.stanford.smi.protege.server.metaproject.impl.GroupOperationImpl
addPropertyValue(PropertyValue) - Method in class edu.stanford.smi.protege.server.metaproject.impl.OperationImpl
addPropertyValue(PropertyValue) - Method in class edu.stanford.smi.protege.server.metaproject.impl.UnbackedOperationImpl
  Performs no operation.
addPropertyValue(PropertyValue) - Method in class edu.stanford.smi.protege.server.metaproject.impl.WrappedProtegeInstanceWithPropsImpl
addPropertyValue(String, String) - Method in class edu.stanford.smi.protege.server.metaproject.impl.WrappedProtegeInstanceWithPropsImpl
addPropertyValue(PropertyValue) - Method in interface edu.stanford.smi.protege.server.metaproject.Operation
addPropertyValue(PropertyValue) - Method in interface edu.stanford.smi.protege.server.metaproject.PolicyControlledObject
addPropertyValue(String, String) - Method in interface edu.stanford.smi.protege.server.metaproject.PolicyControlledObject
addPropertyValue(PropertyValue) - Method in interface edu.stanford.smi.protege.server.metaproject.User
addPropertyValue(String, String) - Method in interface edu.stanford.smi.protege.server.metaproject.User
addReadUpdate(RemoteSession, Frame, SerializedCacheUpdate<RemoteSession, Sft, List>) - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
addReason(CacheRequestReason) - Method in class edu.stanford.smi.protege.server.framestore.background.WorkInfo
addRefreshButton() - Method in class edu.stanford.smi.protege.server.admin.AbstractRefreshableServerPanel
addRefreshButton() - Method in class edu.stanford.smi.protege.server.admin.ControlServerPanel
addRefreshButton() - Method in class edu.stanford.smi.protege.server.admin.MetaprojectPanel
addRelation(String, String) - Method in class edu.stanford.smi.protege.model.framestore.MergingNarrowFrameStore
addRequest(Frame, RemoteSession, CacheRequestReason) - Method in class edu.stanford.smi.protege.server.framestore.background.FrameCalculator
addRequest(Frame, RemoteSession, ServerCachedState, CacheRequestReason, boolean) - Method in class edu.stanford.smi.protege.server.framestore.background.FrameCalculator
addRow(Object) - Method in class edu.stanford.smi.protege.util.RowTableModel
addRow(String, String) - Method in class edu.stanford.smi.protege.widget.PropertiesTableModel
addRuntimeWidgets(Instance, Cls) - Method in class edu.stanford.smi.protege.ui.InstanceDisplay
addSelectedListValue(JList, Object) - Static method in class edu.stanford.smi.protege.util.ComponentUtilities
addSelectedListValues(JList, Collection) - Static method in class edu.stanford.smi.protege.util.ComponentUtilities
addSelectionListener(SelectionListener) - Method in class edu.stanford.smi.protege.util.AbstractSelectableComponent
addSelectionListener(SelectionListener) - Method in interface edu.stanford.smi.protege.util.Selectable
addSelectionListener(SelectionListener) - Method in class edu.stanford.smi.protege.util.SelectableContainer
addSelectionListener(SelectionListener) - Method in class edu.stanford.smi.protege.util.SelectableList
addSelectionListener(SelectionListener) - Method in class edu.stanford.smi.protege.util.SelectableTable
addSelectionListener(SelectionListener) - Method in class edu.stanford.smi.protege.util.SelectableTree
addSelectionListener(SelectionListener) - Method in class edu.stanford.smi.protege.widget.AbstractWidget
addServerProjectListener(ServerProjectListener) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
addServerProjectListener(ServerProjectListener) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
addSlot(Slot, Collection, Collection, boolean) - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
addSlotListener(Slot, SlotListener) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
addSlotListener(SlotListener) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
addSlotListener(SlotListener) - Method in class edu.stanford.smi.protege.model.DefaultSlot
addSlotListener(Slot, SlotListener) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
addSlotListener(SlotListener) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
addSlotListener(SlotListener) - Method in interface edu.stanford.smi.protege.model.Slot
addSlotValue(Slot, Object) - Method in class edu.stanford.smi.protege.code.generator.wrapping.AbstractWrappedInstance
addSlotValue(MetaProjectImpl.SlotEnum, Object) - Method in class edu.stanford.smi.protege.server.metaproject.impl.WrappedProtegeInstanceImpl
addState(ServerCachedState) - Method in class edu.stanford.smi.protege.server.framestore.background.WorkInfo
addSubmenu(JMenu, JMenu) - Static method in class edu.stanford.smi.protege.util.ComponentFactory
addSystemFrames() - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
addSystemFrames(FrameStore) - Method in class edu.stanford.smi.protege.model.SystemFrames
addTab(WidgetDescriptor, int) - Method in class edu.stanford.smi.protege.ui.ProjectView
addTab(WidgetDescriptor) - Method in class edu.stanford.smi.protege.ui.ProjectView
addTab(String, Component) - Method in class edu.stanford.smi.protege.util.ValidatableTabComponent
addTab(String, Component, String) - Method in class edu.stanford.smi.protege.util.ValidatableTabComponent
addTab(String, Icon, Component, String) - Method in class edu.stanford.smi.protege.util.ValidatableTabComponent
addTemplateFacetValue(Slot, Facet, Object) - Method in interface edu.stanford.smi.protege.model.Cls
addTemplateFacetValue(Slot, Facet, Object) - Method in class edu.stanford.smi.protege.model.DefaultCls
addTemplateFacetValue(Cls, Slot, Facet, Object) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
  Deprecated. use #setDirectTemplateFacetValues
addTemplateFacetValue(Cls, Slot, Facet, Object) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
addTemplateSlots(Collection, Cls) - Method in class edu.stanford.smi.protege.widget.TemplateSlotsWidget
addTemplateSlotValue(Slot, Object) - Method in interface edu.stanford.smi.protege.model.Cls
addTemplateSlotValue(Slot, Object) - Method in class edu.stanford.smi.protege.model.DefaultCls
addTemplateSlotValue(Cls, Slot, Object) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
  Deprecated. use #setDirectTemplateSlotValues
addTemplateSlotValue(Cls, Slot, Object) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
addText(String) - Method in class edu.stanford.smi.protege.util.DefaultRenderer
addToggleButton(Action) - Method in class edu.stanford.smi.protege.ui.HeaderComponent
addToggleButton(Action) - Method in class edu.stanford.smi.protege.ui.ProjectToolBar
addToggleToolBarButton(JToolBar, Action) - Static method in class edu.stanford.smi.protege.util.ComponentFactory
addToggleToolBarButton(JToolBar, Action, int) - Static method in class edu.stanford.smi.protege.util.ComponentFactory
addToolBarButton(JToolBar, Action, AbstractButton) - Static method in class edu.stanford.smi.protege.util.ComponentFactory
addToolBarButton(JToolBar, Action) - Static method in class edu.stanford.smi.protege.util.ComponentFactory
addToolBarButton(JToolBar, Action, int) - Static method in class edu.stanford.smi.protege.util.ComponentFactory
addTransactionListener(TransactionListener) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
addTransactionListener(TransactionListener) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
addUniqueListValues(JList, Collection) - Static method in class edu.stanford.smi.protege.util.ComponentUtilities
addUniqueListValues(Collection) - Method in class edu.stanford.smi.protege.widget.InstanceValuesComponent
addUpdate(ValueUpdate) - Method in class edu.stanford.smi.protege.server.framestore.Registration
addUserToolBar(JToolBar) - Method in class edu.stanford.smi.protege.ui.ProjectManager
addUserToolBar(JToolBar) - Method in class edu.stanford.smi.protege.widget.AbstractTabWidget
addValue(Frame, Slot, Facet, boolean, Object) - Method in class edu.stanford.smi.protege.model.framestore.InMemoryFrameDb
addValue(Object) - Method in class edu.stanford.smi.protege.model.framestore.Record
addValue(Frame, Slot, Facet, boolean, Object) - Method in interface edu.stanford.smi.protege.model.Storage
addValue(Frame, Slot, Facet, boolean, Object, int) - Method in interface edu.stanford.smi.protege.model.Storage
addValue(X, Y) - Method in class edu.stanford.smi.protege.util.MultiMap
addValue(Object) - Method in class edu.stanford.smi.protege.util.SimpleListModel
addValue(Object, int) - Method in class edu.stanford.smi.protege.util.SimpleListModel
addValues(Frame, Slot, Facet, boolean, Collection) - Method in class edu.stanford.smi.protege.model.framestore.ClosureCachingBasicFrameStore
addValues(Frame, Slot, Facet, boolean, Collection) - Method in class edu.stanford.smi.protege.model.framestore.ImmutableNamesNarrowFrameStore
addValues(Frame, Slot, Facet, boolean, Collection) - Method in class edu.stanford.smi.protege.model.framestore.InMemoryFrameDb
addValues(Frame, Slot, Facet, boolean, Collection) - Method in class edu.stanford.smi.protege.model.framestore.MergingNarrowFrameStore
addValues(Frame, Slot, Facet, boolean, Collection) - Method in interface edu.stanford.smi.protege.model.framestore.NarrowFrameStore
addValues(Frame, Slot, Facet, boolean, Collection) - Method in class edu.stanford.smi.protege.model.framestore.PlaceHolderNarrowFrameStore
addValues(Frame, Slot, Facet, boolean, Collection, RemoteSession) - Method in interface edu.stanford.smi.protege.server.narrowframestore.RemoteServerNarrowFrameStore
addValues(Frame, Slot, Facet, boolean, Collection, RemoteSession) - Method in class edu.stanford.smi.protege.server.narrowframestore.ServerNarrowFrameStore
addValues(Frame, Slot, Facet, boolean, Collection) - Method in class edu.stanford.smi.protege.storage.database.DefaultDatabaseFrameDb
addValues(Frame, Slot, Facet, boolean, Collection) - Method in class edu.stanford.smi.protege.storage.database.IdleConnectionNarrowFrameStore
addValues(Frame, Slot, Facet, boolean, Collection) - Method in class edu.stanford.smi.protege.storage.database.ValueCachingNarrowFrameStore
addValues(X, Collection<Y>) - Method in class edu.stanford.smi.protege.util.MultiMap
addValues(Collection) - Method in class edu.stanford.smi.protege.util.SimpleListModel
addWidgetListener(WidgetListener) - Method in class edu.stanford.smi.protege.widget.AbstractClsWidget
addWidgetListener(WidgetListener) - Method in interface edu.stanford.smi.protege.widget.ClsWidget
adjustBeginLineColumn(int, int) - Method in class edu.stanford.smi.protege.storage.clips.SimpleCharStream
  Method to adjust line and column numbers for the start of a token.
adjustForClient() - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
adjustForServer() - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
adjustFrameId(FrameID) - Method in class edu.stanford.smi.protege.model.framestore.ImmutableNamesFrameStore
afterCreate(Project) - Method in interface edu.stanford.smi.protege.plugin.ProjectPlugin
  Called after a new project is created but before it is displayed
afterCreate(Project) - Method in class edu.stanford.smi.protege.plugin.ProjectPluginAdapter
afterCreate(Project) - Method in class edu.stanford.smi.protege.plugin.ProjectPluginManager
afterLoad(Project) - Method in interface edu.stanford.smi.protege.plugin.ProjectPlugin
  Called after an existing project is loaded but before it is displayed
afterLoad(Project) - Method in class edu.stanford.smi.protege.plugin.ProjectPluginAdapter
afterLoad(Project) - Method in class edu.stanford.smi.protege.plugin.ProjectPluginManager
afterSave(Project) - Method in interface edu.stanford.smi.protege.plugin.ProjectPlugin
  Called after a project has been saved.
afterSave(Project) - Method in class edu.stanford.smi.protege.plugin.ProjectPluginAdapter
afterSave(Project) - Method in class edu.stanford.smi.protege.plugin.ProjectPluginManager
afterShow(ProjectView, ProjectToolBar, ProjectMenuBar) - Method in class edu.stanford.smi.protege.code.generator.wrapping.CodeGeneratorProjectPlugin
afterShow(ProjectView, ProjectToolBar, ProjectMenuBar) - Method in interface edu.stanford.smi.protege.plugin.ProjectPlugin
  Called after the view has been added to the screen
afterShow(ProjectView, ProjectToolBar, ProjectMenuBar) - Method in class edu.stanford.smi.protege.plugin.ProjectPluginAdapter
afterShow(ProjectView, ProjectToolBar, ProjectMenuBar) - Method in class edu.stanford.smi.protege.plugin.ProjectPluginManager
ALIGNMENT - Static variable in class edu.stanford.smi.protege.server.socket.deflate.PacketHeader
AllowableAction - Class in edu.stanford.smi.protege.util
  Base class for actions that supports two features: (1) listening to a `Selectable`and only enabling if a selection is made, and (2) being disablable manually.
AllowableAction(ResourceKey) - Constructor for class edu.stanford.smi.protege.util.AllowableAction
AllowableAction(ResourceKey, Selectable) - Constructor for class edu.stanford.smi.protege.util.AllowableAction
AllowableAction(String, Selectable) - Constructor for class edu.stanford.smi.protege.util.AllowableAction
AllowableAction(String, Icon, Selectable) - Constructor for class edu.stanford.smi.protege.util.AllowableAction
AllowableAction(String, String, Icon, Selectable) - Constructor for class edu.stanford.smi.protege.util.AllowableAction
allowDelegation() - Method in interface edu.stanford.smi.protege.server.RemoteSession
allowDelegation() - Method in class edu.stanford.smi.protege.server.Session
ALLOWED_CLASSES - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
ALLOWED_CLASSES - Static variable in interface edu.stanford.smi.protege.storage.clips.ParserConstants
  RegularExpression Id.
ALLOWED_FLOATS - Static variable in interface edu.stanford.smi.protege.storage.clips.ParserConstants
  RegularExpression Id.
ALLOWED_GRAMMAR - Static variable in interface edu.stanford.smi.protege.storage.clips.ParserConstants
  RegularExpression Id.
ALLOWED_INTEGERS - Static variable in interface edu.stanford.smi.protege.storage.clips.ParserConstants
  RegularExpression Id.
ALLOWED_PARENTS - Static variable in interface edu.stanford.smi.protege.storage.clips.ParserConstants
  RegularExpression Id.
ALLOWED_STRINGS - Static variable in interface edu.stanford.smi.protege.storage.clips.ParserConstants
  RegularExpression Id.
ALLOWED_SUPERCLASSES - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
ALLOWED_SYMBOLS - Static variable in interface edu.stanford.smi.protege.storage.clips.ParserConstants
  RegularExpression Id.
ALLOWED_VALUES - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
ALLOWED_VALUES - Static variable in interface edu.stanford.smi.protege.storage.clips.ParserConstants
  RegularExpression Id.
allowedClassesValueDescription(Cls, Slot) - Method in class edu.stanford.smi.protege.storage.clips.Parser
allowedConstantValueDescription(Cls, Slot) - Method in class edu.stanford.smi.protege.storage.clips.Parser
allowedConstantValueDescriptionExtension(Cls, Slot) - Method in class edu.stanford.smi.protege.storage.clips.Parser
allowedFloatsValueDescription(Cls, Slot) - Method in class edu.stanford.smi.protege.storage.clips.Parser
allowedGrammarValueDescription(Cls, Slot) - Method in class edu.stanford.smi.protege.storage.clips.Parser
allowedIntegersValueDescription(Cls, Slot) - Method in class edu.stanford.smi.protege.storage.clips.Parser
allowedParentsValueDescription(Cls, Slot) - Method in class edu.stanford.smi.protege.storage.clips.Parser
allowedStringsValueDescription(Cls, Slot) - Method in class edu.stanford.smi.protege.storage.clips.Parser
allowedSymbolsValueDescription(Cls, Slot) - Method in class edu.stanford.smi.protege.storage.clips.Parser
allowedValuesValueDescription(Cls, Slot) - Method in class edu.stanford.smi.protege.storage.clips.Parser
allowsCreateUsers() - Method in interface edu.stanford.smi.protege.server.RemoteServer
allowsCreateUsers() - Method in class edu.stanford.smi.protege.server.Server
allowsMultipleValues(Integer) - Static method in class edu.stanford.smi.protege.model.MaximumCardinalityConstraint
allowsMultipleValues() - Method in class edu.stanford.smi.protege.widget.AbstractSlotWidget
AmalgamatedException - Interface in edu.stanford.smi.protege.exception
AmalgamatedLoadException - Exception in edu.stanford.smi.protege.exception
AmalgamatedLoadException(Collection) - Constructor for exception edu.stanford.smi.protege.exception.AmalgamatedLoadException
ANNOTATED_INSTANCE - Static variable in interface edu.stanford.smi.protege.model.Model.Slot
ANNOTATED_INSTANCE - Static variable in interface edu.stanford.smi.protege.model.Model.SlotID
ANNOTATION - Static variable in interface edu.stanford.smi.protege.model.Model.Cls
ANNOTATION - Static variable in interface edu.stanford.smi.protege.model.Model.ClsID
ANNOTATION_TEXT - Static variable in interface edu.stanford.smi.protege.model.Model.Slot
ANNOTATION_TEXT - Static variable in interface edu.stanford.smi.protege.model.Model.SlotID
ANY - Static variable in class edu.stanford.smi.protege.model.ValueType
ANY - Static variable in interface edu.stanford.smi.protege.storage.clips.ParserConstants
  RegularExpression Id.
appendIcon(Icon) - Method in class edu.stanford.smi.protege.util.DefaultRenderer
appendText(String) - Method in class edu.stanford.smi.protege.util.DefaultRenderer
Applet - Class in edu.stanford.smi.protege
  Class to allow Protege to run as an applet.
Applet() - Constructor for class edu.stanford.smi.protege.Applet
Application - Class in edu.stanford.smi.protege
  Main class for the Protege application (as opposed to an applet).
Application() - Constructor for class edu.stanford.smi.protege.Application
APPLICATION_EXIT - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
APPLICATION_INSTALL_DIRECTORY - Static variable in class edu.stanford.smi.protege.util.ApplicationProperties
APPLICATION_PREFERENCES - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
ApplicationProperties - Class in edu.stanford.smi.protege.util
  Utility class for accessing system properties and properties from the application properties file.
ApplicationProperties() - Constructor for class edu.stanford.smi.protege.util.ApplicationProperties
apply(Collection<? extends X>, UnaryFunction<X, Y>) - Static method in class edu.stanford.smi.protege.util.CollectionUtilities
apply(Component, UnaryFunction) - Static method in class edu.stanford.smi.protege.util.ComponentUtilities
apply(X) - Method in interface edu.stanford.smi.protege.util.UnaryFunction
apply(Object) - Method in interface edu.stanford.smi.protege.util.UnaryPredicate
APPLY_TO_TRAILER_STRING - Static variable in class edu.stanford.smi.protege.model.Transaction
applyToDescendents(Component, UnaryFunction) - Static method in class edu.stanford.smi.protege.util.ComponentUtilities
archive(Project, String) - Method in class edu.stanford.smi.protege.util.ArchiveManager
ARCHIVE_FAILED_DIALOG_TEXT - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
ArchiveManager - Class in edu.stanford.smi.protege.util
ArchivePanel - Class in edu.stanford.smi.protege.ui
ArchivePanel() - Constructor for class edu.stanford.smi.protege.ui.ArchivePanel
ArchiveProject - Class in edu.stanford.smi.protege.action
ArchiveProject(boolean) - Constructor for class edu.stanford.smi.protege.action.ArchiveProject
archiveProjectRequest() - Method in class edu.stanford.smi.protege.ui.ProjectManager
ArchiveRecord - Class in edu.stanford.smi.protege.util
ArchiveRecord(File, String) - Constructor for class edu.stanford.smi.protege.util.ArchiveRecord
areDirectValues(Collection) - Method in class edu.stanford.smi.protege.widget.AbstractSlotWidget
areValidOwnSlotValues(Slot, Collection) - Method in class edu.stanford.smi.protege.model.DefaultFrame
areValidOwnSlotValues(Frame, Slot, Collection) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
areValidOwnSlotValues(Slot, Collection) - Method in interface edu.stanford.smi.protege.model.Frame
areValidOwnSlotValues(Frame, Slot, Collection) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
areValidValues(Frame, Slot, Collection, Collection) - Method in class edu.stanford.smi.protege.model.AbstractFacetConstraint
areValidValues(Frame, Slot, Collection) - Method in class edu.stanford.smi.protege.model.DefaultFacet
areValidValues(Frame, Slot, Collection) - Method in interface edu.stanford.smi.protege.model.Facet
areValidValues(Frame, Slot, Collection, Collection) - Method in interface edu.stanford.smi.protege.model.FacetConstraint
ArgumentCheckingFrameStore - Class in edu.stanford.smi.protege.model.framestore
ArgumentCheckingFrameStore() - Constructor for class edu.stanford.smi.protege.model.framestore.ArgumentCheckingFrameStore
ArrayListMultiMap<X,Y> - Class in edu.stanford.smi.protege.util
  Multimap implementation where the value collection is a set.
ArrayListMultiMap() - Constructor for class edu.stanford.smi.protege.util.ArrayListMultiMap
ArrayListMultiMap(int) - Constructor for class edu.stanford.smi.protege.util.ArrayListMultiMap
as(Class<? extends X>) - Method in class edu.stanford.smi.protege.code.generator.wrapping.AbstractWrappedInstance
as(Object, Class<? extends X>) - Static method in class edu.stanford.smi.protege.code.generator.wrapping.OntologyJavaMappingUtil
Assert - Class in edu.stanford.smi.protege.util
  A utility class for checking assertions.
Assert() - Constructor for class edu.stanford.smi.protege.util.Assert
assertEquals(float, float, float) - Static method in class edu.stanford.smi.protege.util.Assert
assertEquals(String, float, float, float) - Static method in class edu.stanford.smi.protege.util.Assert
assertEquals(double, double, double) - Static method in class edu.stanford.smi.protege.util.Assert
assertEquals(String, double, double, double) - Static method in class edu.stanford.smi.protege.util.Assert
assertEquals(int, int) - Static method in class edu.stanford.smi.protege.util.Assert
assertEquals(String, int, int) - Static method in class edu.stanford.smi.protege.util.Assert
assertEquals(long, long) - Static method in class edu.stanford.smi.protege.util.Assert
assertEquals(String, long, long) - Static method in class edu.stanford.smi.protege.util.Assert
assertEquals(Object, Object) - Static method in class edu.stanford.smi.protege.util.Assert
assertEquals(String, Object, Object) - Static method in class edu.stanford.smi.protege.util.Assert
assertFalse(boolean) - Static method in class edu.stanford.smi.protege.util.Assert
assertFalse(String, boolean) - Static method in class edu.stanford.smi.protege.util.Assert
assertFrameName() - Method in class edu.stanford.smi.protege.model.DefaultFrame
assertFrameName(Frame) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
assertFrameName() - Method in interface edu.stanford.smi.protege.model.Frame
  This call ensures that the name slot for the frame has the frame name as its value.
assertFrameName(Frame) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
assertNotNull(Object) - Static method in class edu.stanford.smi.protege.util.Assert
assertNotNull(String, Object) - Static method in class edu.stanford.smi.protege.util.Assert
assertNull(Object) - Static method in class edu.stanford.smi.protege.util.Assert
assertNull(String, Object) - Static method in class edu.stanford.smi.protege.util.Assert
assertSame(Object, Object) - Static method in class edu.stanford.smi.protege.util.Assert
assertSame(String, Object, Object) - Static method in class edu.stanford.smi.protege.util.Assert
assertTrue(boolean) - Static method in class edu.stanford.smi.protege.util.Assert
assertTrue(String, boolean) - Static method in class edu.stanford.smi.protege.util.Assert
assertTypeAndName(FrameStore, Frame, Collection<Cls>) - Method in class edu.stanford.smi.protege.model.SystemFrames
ASSOCIATED_FACET - Static variable in interface edu.stanford.smi.protege.model.Model.Slot
ASSOCIATED_FACET - Static variable in interface edu.stanford.smi.protege.model.Model.SlotID
ASSOCIATED_FACET - Static variable in interface edu.stanford.smi.protege.storage.clips.ParserConstants
  RegularExpression Id.
ASSOCIATED_SLOT - Static variable in interface edu.stanford.smi.protege.model.Model.Slot
ASSOCIATED_SLOT - Static variable in interface edu.stanford.smi.protege.model.Model.SlotID
associatedFacet(Cls, Slot) - Method in class edu.stanford.smi.protege.storage.clips.Parser
AT_LEAST_LABEL - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
AT_MOST_LABEL - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
attemptClose(int) - Method in class edu.stanford.smi.protege.util.ModalDialog
attemptDialogClose(int) - Static method in class edu.stanford.smi.protege.util.ModalDialog
attemptSave() - Method in class edu.stanford.smi.protege.ui.ProjectView
autoscroll(Point) - Method in class edu.stanford.smi.protege.util.SelectableTree
AUTOSYNCHRONIZE_CLASS_TREES - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
AutosynchronizeTrees - Class in edu.stanford.smi.protege.action
AutosynchronizeTrees() - Constructor for class edu.stanford.smi.protege.action.AutosynchronizeTrees

## B

backup(int) - Method in class edu.stanford.smi.protege.storage.clips.SimpleCharStream
  Backup a number of characters.
BANDWIDTH_CAP_PROPERTY - Static variable in class edu.stanford.smi.protege.server.framestore.BandWidthPolicy
BandWidthPolicy - Class in edu.stanford.smi.protege.server.framestore
BandWidthPolicy() - Constructor for class edu.stanford.smi.protege.server.framestore.BandWidthPolicy
BandWidthPolicy(int, int) - Constructor for class edu.stanford.smi.protege.server.framestore.BandWidthPolicy
BASE - Static variable in interface edu.stanford.smi.protege.event.ServerProjectEvent
BASE_FRAME_TYPE_VALUE - Static variable in class edu.stanford.smi.protege.storage.database.DatabaseUtils
BasicCache<S,V,R> - Class in edu.stanford.smi.protege.util.transaction.cache.impl
  This is a basic cache that - ignores the impact of transactions on the cache.
BasicCache() - Constructor for class edu.stanford.smi.protege.util.transaction.cache.impl.BasicCache
beep() - Static method in class edu.stanford.smi.protege.util.SystemUtilities
beforeClose(Project) - Method in interface edu.stanford.smi.protege.plugin.ProjectPlugin
  Called before the close operation for a project
beforeClose(Project) - Method in class edu.stanford.smi.protege.plugin.ProjectPluginAdapter
beforeClose(Project) - Method in class edu.stanford.smi.protege.plugin.ProjectPluginManager
beforeHide(ProjectView, ProjectToolBar, ProjectMenuBar) - Method in class edu.stanford.smi.protege.code.generator.wrapping.CodeGeneratorProjectPlugin
beforeHide(ProjectView, ProjectToolBar, ProjectMenuBar) - Method in interface edu.stanford.smi.protege.plugin.ProjectPlugin
  Call before the view has been removed from the screen
beforeHide(ProjectView, ProjectToolBar, ProjectMenuBar) - Method in class edu.stanford.smi.protege.plugin.ProjectPluginAdapter
beforeHide(ProjectView, ProjectToolBar, ProjectMenuBar) - Method in class edu.stanford.smi.protege.plugin.ProjectPluginManager
beforeProjectSessionClosed(ServerProjectSessionClosedEvent) - Method in class edu.stanford.smi.protege.event.ServerProjectAdapter
beforeProjectSessionClosed(ServerProjectSessionClosedEvent) - Method in interface edu.stanford.smi.protege.event.ServerProjectListener
beforeSave(Project) - Method in interface edu.stanford.smi.protege.plugin.ProjectPlugin
  Called before a save operation for a project
beforeSave(Project) - Method in class edu.stanford.smi.protege.plugin.ProjectPluginAdapter
beforeSave(Project) - Method in class edu.stanford.smi.protege.plugin.ProjectPluginManager
beginBatch() - Method in class edu.stanford.smi.protege.storage.database.DefaultDatabaseFrameDb
beginColumn - Variable in class edu.stanford.smi.protege.storage.clips.Token
  The column number of the first character of this Token.
beginLine - Variable in class edu.stanford.smi.protege.storage.clips.Token
  The line number of the first character of this Token.
BeginToken() - Method in class edu.stanford.smi.protege.storage.clips.SimpleCharStream
  Start.
beginTransaction(String) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
beginTransaction(String, String) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
beginTransaction(String) - Method in class edu.stanford.smi.protege.model.framestore.ArgumentCheckingFrameStore
beginTransaction(String) - Method in class edu.stanford.smi.protege.model.framestore.ChangeMonitorFrameStore
beginTransaction(String) - Method in class edu.stanford.smi.protege.model.framestore.ClosureCachingBasicFrameStore
beginTransaction(String) - Method in class edu.stanford.smi.protege.model.framestore.EventDispatchFrameStore
beginTransaction(String) - Method in class edu.stanford.smi.protege.model.framestore.EventGeneratorFrameStore
beginTransaction(String) - Method in interface edu.stanford.smi.protege.model.framestore.FrameStore
beginTransaction(String) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreAdapter
beginTransaction(String, String) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreAdapter
beginTransaction(String) - Method in class edu.stanford.smi.protege.model.framestore.ImmutableNamesNarrowFrameStore
beginTransaction(String) - Method in class edu.stanford.smi.protege.model.framestore.InMemoryFrameDb
beginTransaction(String) - Method in class edu.stanford.smi.protege.model.framestore.MergingNarrowFrameStore
beginTransaction(String) - Method in class edu.stanford.smi.protege.model.framestore.ModificationRecordFrameStore
beginTransaction(String) - Method in interface edu.stanford.smi.protege.model.framestore.NarrowFrameStore
beginTransaction(String) - Method in class edu.stanford.smi.protege.model.framestore.PlaceHolderNarrowFrameStore
beginTransaction(String) - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
beginTransaction(String) - Method in class edu.stanford.smi.protege.model.framestore.TemplateFrameStore
beginTransaction(String) - Method in class edu.stanford.smi.protege.model.framestore.TransactionFrameStore
beginTransaction(String) - Method in class edu.stanford.smi.protege.model.framestore.undo.UndoFrameStore
beginTransaction(String) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
  Tells the system that one or more edit actions will follow which should be handled as a unit for undo.
beginTransaction(String, String) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
beginTransaction() - Method in interface edu.stanford.smi.protege.model.Storage
beginTransaction(String) - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
beginTransaction(String, RemoteSession) - Method in interface edu.stanford.smi.protege.server.framestore.RemoteServerFrameStore
beginTransaction(String, RemoteSession) - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
beginTransaction(String, RemoteSession) - Method in interface edu.stanford.smi.protege.server.narrowframestore.RemoteServerNarrowFrameStore
beginTransaction(String, RemoteSession) - Method in class edu.stanford.smi.protege.server.narrowframestore.ServerNarrowFrameStore
beginTransaction(RemoteSession) - Method in class edu.stanford.smi.protege.server.update.DeferredOperationCache
beginTransaction(String) - Method in class edu.stanford.smi.protege.storage.database.AbstractDatabaseFrameDb
beginTransaction(String) - Method in class edu.stanford.smi.protege.storage.database.DefaultDatabaseFrameDb
beginTransaction(String) - Method in class edu.stanford.smi.protege.storage.database.IdleConnectionNarrowFrameStore
beginTransaction() - Method in class edu.stanford.smi.protege.storage.database.RobustConnection
beginTransaction(String) - Method in class edu.stanford.smi.protege.storage.database.ValueCachingNarrowFrameStore
beginTransaction(S) - Method in interface edu.stanford.smi.protege.util.transaction.cache.Cache
  The session has entered a transaction.
beginTransaction(S) - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.BasicCache
beginTransaction(S) - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.CompleteableCache
beginTransaction(S) - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.InvalidatableCache
beginTransaction(S) - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.ReadCommittedCache
beginTransaction(S) - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.ReadUncommittedCache
beginTransaction(S) - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.RepeatableReadCache
beginTransaction() - Method in class edu.stanford.smi.protege.util.transaction.TransactionMonitor
beginTransaction(String) - Method in class edu.stanford.smi.protege.widget.AbstractWidget
beginTransaction(String, String) - Method in class edu.stanford.smi.protege.widget.AbstractWidget
bindName() - Method in class edu.stanford.smi.protege.server.Server
BLANK_COMMENT - Static variable in interface edu.stanford.smi.protege.storage.clips.ParserConstants
  RegularExpression Id.
BOOLEAN - Static variable in interface edu.stanford.smi.protege.model.Model.Cls
BOOLEAN - Static variable in interface edu.stanford.smi.protege.model.Model.ClsID
BOOLEAN - Static variable in class edu.stanford.smi.protege.model.ValueType
BOOLEAN_TYPE - Static variable in interface edu.stanford.smi.protege.storage.xml.XMLString.AttributeValue
BooleanListWidget - Class in edu.stanford.smi.protege.widget
  Slot widget for acquiring a list of booleans.
BooleanListWidget() - Constructor for class edu.stanford.smi.protege.widget.BooleanListWidget
BRA - Static variable in interface edu.stanford.smi.protege.storage.clips.ParserConstants
  RegularExpression Id.
bringErrorFrameToFront() - Method in class edu.stanford.smi.protege.ui.ProjectManager
browse() - Method in class edu.stanford.smi.protege.util.FileField
browse() - Method in class edu.stanford.smi.protege.util.URIField
BrowseForFile - Class in edu.stanford.smi.protege.action
  Action to bring up a file chooser dialog and pick a file.
BrowseForFile(JComponent, String) - Constructor for class edu.stanford.smi.protege.action.BrowseForFile
BrowseForFile(JComponent, String, String) - Constructor for class edu.stanford.smi.protege.action.BrowseForFile
BROWSER - Static variable in class edu.stanford.smi.protege.util.ApplicationProperties
BROWSER_TEXT_CHANGED - Static variable in class edu.stanford.smi.protege.event.FrameEvent
BrowserComparator - Class in edu.stanford.smi.protege.ui
  Comparator for browser key text for two frames.
BrowserComparator() - Constructor for class edu.stanford.smi.protege.ui.BrowserComparator
BrowserLauncher - Class in edu.stanford.smi.protege.util
  BrowserLauncher is a class that provides one static method, openURL, which opens the default web browser for the current user of the system to the given URL.
BrowserSlotPattern - Class in edu.stanford.smi.protege.model
BrowserSlotPattern(Slot) - Constructor for class edu.stanford.smi.protege.model.BrowserSlotPattern
BrowserSlotPattern(List) - Constructor for class edu.stanford.smi.protege.model.BrowserSlotPattern
browserTextChanged(FrameEvent) - Method in class edu.stanford.smi.protege.event.FrameAdapter
browserTextChanged(FrameEvent) - Method in interface edu.stanford.smi.protege.event.FrameListener
BrowserTextListFinder - Class in edu.stanford.smi.protege.ui
BrowserTextListFinder(JList, ResourceKey) - Constructor for class edu.stanford.smi.protege.ui.BrowserTextListFinder
bufcolumn - Variable in class edu.stanford.smi.protege.storage.clips.SimpleCharStream
buffer - Variable in class edu.stanford.smi.protege.server.socket.deflate.CompressingInputStream
buffer - Variable in class edu.stanford.smi.protege.server.socket.deflate.CompressingOutputStream
buffer - Variable in class edu.stanford.smi.protege.storage.clips.SimpleCharStream
BUFFER_SIZE - Static variable in class edu.stanford.smi.protege.server.socket.deflate.CompressingOutputStream
bufline - Variable in class edu.stanford.smi.protege.storage.clips.SimpleCharStream
bufpos - Variable in class edu.stanford.smi.protege.storage.clips.SimpleCharStream
  Position in buffer.
BUILD - Static variable in interface edu.stanford.smi.protege.storage.clips.ParserConstants
  RegularExpression Id.
buildGUI(Properties) - Method in class edu.stanford.smi.protege.widget.ProtegePropertiesComponent
buildNewProject(KnowledgeBaseFactory) - Method in class edu.stanford.smi.protege.plugin.AbstractCreateProjectPlugin
BuildProject - Class in edu.stanford.smi.protege.action
  Action to build a project from component pieces (files)
BuildProject() - Constructor for class edu.stanford.smi.protege.action.BuildProject
buildProject(KnowledgeBaseFactory) - Method in class edu.stanford.smi.protege.ui.ProjectManager
buildProjectRequest() - Method in class edu.stanford.smi.protege.ui.ProjectManager
BundleHelper - Class in edu.stanford.smi.protege.resource
BundleHelper(String, Class) - Constructor for class edu.stanford.smi.protege.resource.BundleHelper
ButtonConfigurationPanel - Class in edu.stanford.smi.protege.widget
  Standard configuration panel for buttons on SlotWidgets.
ButtonConfigurationPanel(PropertyList) - Constructor for class edu.stanford.smi.protege.widget.ButtonConfigurationPanel

## C

Cache<S,V,R> - Interface in edu.stanford.smi.protege.util.transaction.cache
  This interface represents a simple cache mechanism for storing cached values either globally or on a per session basis.
CACHE_LOG - Static variable in class edu.stanford.smi.protege.storage.database.ValueCachingNarrowFrameStore
CacheAbortComplete<S,V,R> - Class in edu.stanford.smi.protege.util.transaction.cache.serialize
CacheAbortComplete() - Constructor for class edu.stanford.smi.protege.util.transaction.cache.serialize.CacheAbortComplete
CacheBeginTransaction<S,V,R> - Class in edu.stanford.smi.protege.util.transaction.cache.serialize
CacheBeginTransaction(S) - Constructor for class edu.stanford.smi.protege.util.transaction.cache.serialize.CacheBeginTransaction
CacheCommitTransaction<S,V,R> - Class in edu.stanford.smi.protege.util.transaction.cache.serialize
CacheCommitTransaction(S) - Constructor for class edu.stanford.smi.protege.util.transaction.cache.serialize.CacheCommitTransaction
CacheCompleted<S,V,R> - Class in edu.stanford.smi.protege.util.transaction.cache.serialize
CacheCompleted() - Constructor for class edu.stanford.smi.protege.util.transaction.cache.serialize.CacheCompleted
CacheControlJob - Class in edu.stanford.smi.protege.server.job
CacheControlJob(KnowledgeBase, boolean, boolean) - Constructor for class edu.stanford.smi.protege.server.job.CacheControlJob
CacheDelete<S,V,R> - Class in edu.stanford.smi.protege.util.transaction.cache.serialize
CacheDelete(S) - Constructor for class edu.stanford.smi.protege.util.transaction.cache.serialize.CacheDelete
CacheFactory - Class in edu.stanford.smi.protege.util.transaction.cache
CacheFactory() - Constructor for class edu.stanford.smi.protege.util.transaction.cache.CacheFactory
cacheLog - Static variable in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
CacheMap<X,Y> - Class in edu.stanford.smi.protege.util
  Deprecated. use the transaction cache utilities.
CacheMap(int) - Constructor for class edu.stanford.smi.protege.util.CacheMap
  Deprecated.
CacheMap() - Constructor for class edu.stanford.smi.protege.util.CacheMap
  Deprecated.
CacheModify<S,V,R> - Class in edu.stanford.smi.protege.util.transaction.cache.serialize
CacheModify(S, V, CacheResult<R>) - Constructor for class edu.stanford.smi.protege.util.transaction.cache.serialize.CacheModify
CacheRead<S,V,R> - Class in edu.stanford.smi.protege.util.transaction.cache.serialize
CacheRead(S, V, CacheResult<R>) - Constructor for class edu.stanford.smi.protege.util.transaction.cache.serialize.CacheRead
CacheRequestReason - Enum in edu.stanford.smi.protege.server.framestore.background
CacheResult<R> - Class in edu.stanford.smi.protege.util.transaction.cache
CacheResult(R, boolean) - Constructor for class edu.stanford.smi.protege.util.transaction.cache.CacheResult
CacheRollbackTransaction<S,V,R> - Class in edu.stanford.smi.protege.util.transaction.cache.serialize
CacheRollbackTransaction(S) - Constructor for class edu.stanford.smi.protege.util.transaction.cache.serialize.CacheRollbackTransaction
CacheStartComplete<S,V,R> - Class in edu.stanford.smi.protege.util.transaction.cache.serialize
CacheStartComplete() - Constructor for class edu.stanford.smi.protege.util.transaction.cache.serialize.CacheStartComplete
calculateClosure(NarrowFrameStore, Frame, Slot, Facet, boolean) - Static method in class edu.stanford.smi.protege.model.framestore.ClosureUtils
CallCachingFrameStore - Class in edu.stanford.smi.protege.model.framestore
CallCachingFrameStore() - Constructor for class edu.stanford.smi.protege.model.framestore.CallCachingFrameStore
canAs(Class<?>) - Method in class edu.stanford.smi.protege.code.generator.wrapping.AbstractWrappedInstance
canAs(Object, Class<?>) - Static method in class edu.stanford.smi.protege.code.generator.wrapping.OntologyJavaMappingUtil
CANCEL_BUTTON_LABEL - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
cancelShutdownProject(RemoteSession, String) - Method in interface edu.stanford.smi.protege.server.RemoteServer
cancelShutdownProject(RemoteSession, String) - Method in class edu.stanford.smi.protege.server.Server
canClose() - Method in class edu.stanford.smi.protege.ui.ProjectView
canClose(int) - Method in interface edu.stanford.smi.protege.util.ModalDialog.CloseCallback
canClose(int) - Method in class edu.stanford.smi.protege.util.ProjectChooser
canClose() - Method in class edu.stanford.smi.protege.widget.AbstractTabWidget
canClose() - Method in interface edu.stanford.smi.protege.widget.TabWidget
  Called when the user attempts to close a project.
canCreateProject(KnowledgeBaseFactory, boolean) - Method in interface edu.stanford.smi.protege.plugin.CreateProjectPlugin
canCreateProject(KnowledgeBaseFactory, boolean) - Method in class edu.stanford.smi.protege.storage.clips.ClipsFilesCreateProjectPlugin
canCreateProject(KnowledgeBaseFactory, boolean) - Method in class edu.stanford.smi.protege.storage.database.DatabaseCreateProjectPlugin
canExport(Project) - Method in class edu.stanford.smi.protege.plugin.AbstractExportPlugin
canExport(Project) - Method in interface edu.stanford.smi.protege.plugin.ExportProjectPlugin
canExport(Project) - Method in class edu.stanford.smi.protege.storage.clips.ClipsFilesExportProjectPlugin
canExportToNewFormat(Project) - Method in class edu.stanford.smi.protege.plugin.AbstractBackendExportPlugin
canExportToNewFormat(Project) - Method in class edu.stanford.smi.protege.storage.clips.ClipsFilesExportProjectPlugin
canFinish() - Method in class edu.stanford.smi.protege.util.Wizard
canGoBack() - Method in class edu.stanford.smi.protege.util.Wizard
canGoNext() - Method in class edu.stanford.smi.protege.util.Wizard
canRedo() - Method in interface edu.stanford.smi.protege.model.CommandManager
canRedo() - Method in class edu.stanford.smi.protege.model.framestore.undo.UndoFrameStore
canRemove(Collection) - Method in class edu.stanford.smi.protege.widget.AbstractListWidget
canRemove(Collection) - Method in class edu.stanford.smi.protege.widget.DirectDomainWidget
canSave() - Method in class edu.stanford.smi.protege.widget.AbstractTabWidget
canSave() - Method in interface edu.stanford.smi.protege.widget.TabWidget
  Called when the user attempts to save a project.
canStartDrag(Collection) - Method in class edu.stanford.smi.protege.ui.ClsesTreeDragSourceListener
canStartDrag(Collection) - Method in class edu.stanford.smi.protege.ui.SlotsTreeDragSourceListener
canStartDrag(Collection) - Method in class edu.stanford.smi.protege.util.TreeDragSourceListener
canUndo() - Method in interface edu.stanford.smi.protege.model.CommandManager
canUndo() - Method in class edu.stanford.smi.protege.model.framestore.undo.UndoFrameStore
capitalize(String) - Static method in class edu.stanford.smi.protege.util.StringUtilities
CARDINALITY - Static variable in interface edu.stanford.smi.protege.model.Model.Facet
CARDINALITY - Static variable in interface edu.stanford.smi.protege.model.Model.FacetID
CARDINALITY - Static variable in interface edu.stanford.smi.protege.model.Model.Slot
CARDINALITY - Static variable in interface edu.stanford.smi.protege.model.Model.SlotID
CARDINALITY - Static variable in interface edu.stanford.smi.protege.storage.clips.ParserConstants
  RegularExpression Id.
CardinalityFacetRenderer - Class in edu.stanford.smi.protege.ui
  Renderer for cardinality facet in the template slots pane.
CardinalityFacetRenderer(KnowledgeBase) - Constructor for class edu.stanford.smi.protege.ui.CardinalityFacetRenderer
cardinalityValueDescription(Cls, Slot) - Method in class edu.stanford.smi.protege.storage.clips.Parser
CASCADE_WINDOWS - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
CascadeWindows - Class in edu.stanford.smi.protege.action
  Cascade all of the top-level windows
CascadeWindows(boolean) - Constructor for class edu.stanford.smi.protege.action.CascadeWindows
cascadeWindows(Point, Collection) - Method in class edu.stanford.smi.protege.ui.ProjectManager
cascadeWindowsRequest() - Method in class edu.stanford.smi.protege.ui.ProjectManager
center(Component) - Static method in class edu.stanford.smi.protege.util.ComponentUtilities
changed(ListSelectionEvent) - Method in class edu.stanford.smi.protege.util.ListSelectionListenerAdapter
changed(ActionEvent) - Method in class edu.stanford.smi.protege.util.SwitchableActionListener
changed(ItemEvent) - Method in class edu.stanford.smi.protege.util.SwitchableItemListener
changed(ListSelectionEvent) - Method in class edu.stanford.smi.protege.util.SwitchableListSelectionListener
changed(SelectionEvent) - Method in class edu.stanford.smi.protege.util.SwitchableSelectionListener
changedUpdate(DocumentEvent) - Method in class edu.stanford.smi.protege.util.DocumentChangedListener
ChangeIncludedProjects - Class in edu.stanford.smi.protege.action
  Allow the user to change the included projects.
ChangeIncludedProjects() - Constructor for class edu.stanford.smi.protege.action.ChangeIncludedProjects
changeIncludedProjectURIsRequest(Collection) - Method in class edu.stanford.smi.protege.ui.ProjectManager
ChangeMonitorFrameStore - Class in edu.stanford.smi.protege.model.framestore
ChangeMonitorFrameStore() - Constructor for class edu.stanford.smi.protege.model.framestore.ChangeMonitorFrameStore
ChangeProjectFormatWizardPage - Class in edu.stanford.smi.protege.plugin
  TODO Class Comment
ChangeProjectFormatWizardPage(ExportWizard, BackendExportPlugin, Project) - Constructor for class edu.stanford.smi.protege.plugin.ChangeProjectFormatWizardPage
ChangeProjectStorageFormat - Class in edu.stanford.smi.protege.action
  Change the backend used to store a project
ChangeProjectStorageFormat() - Constructor for class edu.stanford.smi.protege.action.ChangeProjectStorageFormat
changeProjectStorageFormatRequest() - Method in class edu.stanford.smi.protege.ui.ProjectManager
changeSize(int) - Static method in class edu.stanford.smi.protege.action.FontAction
characters(char[], int, int) - Method in class edu.stanford.smi.protege.storage.xml.XMLHandler
checkAuth() - Static method in class edu.stanford.smi.protege.server.socket.SSLFactory
CheckBoxRenderer - Class in edu.stanford.smi.protege.ui
  Renderer to display a check box to acquire a boolean value.
CheckBoxRenderer() - Constructor for class edu.stanford.smi.protege.ui.CheckBoxRenderer
CheckBoxWidget - Class in edu.stanford.smi.protege.widget
  A check box slot widget for use with boolean slots.
CheckBoxWidget() - Constructor for class edu.stanford.smi.protege.widget.CheckBoxWidget
checkConnection() - Method in class edu.stanford.smi.protege.storage.database.RobustConnection
checkDropTarget(Component, Object) - Method in class edu.stanford.smi.protege.util.DefaultRenderer
checkMySQLBug() - Method in class edu.stanford.smi.protege.storage.database.DefaultDatabaseFrameDb
  This routine checks for a bug in mysql.
checkUniqueness(String) - Method in class edu.stanford.smi.protege.model.framestore.ImmutableNamesFrameStore
childAdded(Object) - Method in class edu.stanford.smi.protege.util.LazyTreeNode
childAdded(Object, int) - Method in class edu.stanford.smi.protege.util.LazyTreeNode
childRemoved(Object) - Method in class edu.stanford.smi.protege.util.LazyTreeNode
children() - Method in class edu.stanford.smi.protege.util.LazyTreeNode
childReplaced(Object, Object) - Method in class edu.stanford.smi.protege.util.LazyTreeRoot
CLASS - Static variable in interface edu.stanford.smi.protege.model.Model.Cls
CLASS - Static variable in interface edu.stanford.smi.protege.model.Model.ClsID
CLASS - Static variable in interface edu.stanford.smi.protege.storage.xml.XMLString.ElementName
CLASS_ADD - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
CLASS_ADD_SUPERCLASS - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
CLASS_BOOLEAN - Static variable in class edu.stanford.smi.protege.util.PropertyList
CLASS_BROWSER_ALL_RELATIONS_LABEL - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
CLASS_BROWSER_CHANGE_METACLASS_MENU_ITEM - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
CLASS_BROWSER_CHANGE_METACLASS_OF_SUBCLASSES_MENU_ITEM - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
CLASS_BROWSER_COLLAPSE_TREE_MENU_ITEM - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
CLASS_BROWSER_CREATE_SUBCLASS_USING_METACLASS_MENU_ITEM - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
CLASS_BROWSER_EXPAND_TREE_MENU_ITEM - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
CLASS_BROWSER_FOR_PROJECT_LABEL - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
CLASS_BROWSER_HIDE_CLASS_MENU_ITEM - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
CLASS_BROWSER_HIERARCHY_LABEL - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
CLASS_BROWSER_SET_AS_DEFAULT_METACLASS_MENU_ITEM - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
CLASS_BROWSER_SET_AS_DEFAULT_METASLOT_MENU_ITEM - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
CLASS_BROWSER_SHOW_ALL_RELATIONS_MENU_ITEM - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
CLASS_BROWSER_SHOW_CLASS_HIERARCHY_MENU_ITEM - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
CLASS_BROWSER_SHOW_RELATION_MENU_ITEM - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
CLASS_BROWSER_SUPERCLASSES_LABEL - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
CLASS_BROWSER_TITLE - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
CLASS_BROWSER_UNHIDE_CLASS_MENU_ITEM - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
CLASS_BROWSER_UNSET_AS_DEFAULT_METACLASS_MENU_ITEM - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
CLASS_BROWSER_UNSET_AS_DEFAULT_METASLOT_MENU_ITEM - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
CLASS_COPY - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
CLASS_CREATE - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
CLASS_CREATE_SUBCLASS - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
CLASS_DELETE - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
CLASS_EDITOR_FOR_CLASS_LABEL - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
CLASS_EDITOR_TITLE - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
CLASS_INTEGER - Static variable in class edu.stanford.smi.protege.util.PropertyList
CLASS_MAP - Static variable in class edu.stanford.smi.protege.model.Project
CLASS_MOVE_DOWN - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
CLASS_MOVE_UP - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
CLASS_NOTE - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
CLASS_NOTE_CREATE - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
CLASS_NOTE_DELETE - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
CLASS_NOTE_HIDE_ALL - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
CLASS_PROPERTY_LIST - Static variable in class edu.stanford.smi.protege.util.PropertyList
CLASS_RECTANGLE - Static variable in class edu.stanford.smi.protege.util.PropertyList
CLASS_REMOVE - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
CLASS_REMOVE_SUPERCLASS - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
CLASS_SEARCH_FOR - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
CLASS_STRING - Static variable in class edu.stanford.smi.protege.util.PropertyList
CLASS_TYPE - Static variable in interface edu.stanford.smi.protege.storage.xml.XMLString.AttributeValue
CLASS_VIEW - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
CLASS_VIEW_REFERENCES - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
CLASS_WIDGET_DESCRIPTOR - Static variable in class edu.stanford.smi.protege.util.PropertyList
CLASSES_VIEW_TITLE - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
CleanDispatchFrameStore - Class in edu.stanford.smi.protege.model.framestore.cleandispatch
CleanDispatchFrameStore() - Constructor for class edu.stanford.smi.protege.model.framestore.cleandispatch.CleanDispatchFrameStore
Clear - Class in edu.stanford.smi.protege.action
  TODO Class Comment
Clear(boolean) - Constructor for class edu.stanford.smi.protege.action.Clear
clear() - Method in class edu.stanford.smi.protege.util.DefaultErrorHandler
clear() - Method in class edu.stanford.smi.protege.util.DefaultRenderer
clear() - Method in class edu.stanford.smi.protege.util.HashList
  Deprecated. Removes all of the elements from this list.
clear() - Method in class edu.stanford.smi.protege.util.MultiMap
clear() - Method in class edu.stanford.smi.protege.util.PropertyList
clear() - Method in class edu.stanford.smi.protege.util.RowTableModel
clear() - Method in class edu.stanford.smi.protege.util.SimpleListModel
CLEAR_ACTION - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
clearAllListeners() - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
clearAllListeners() - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreManager
clearAllListeners() - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
clearCachedWidgets() - Method in class edu.stanford.smi.protege.model.Project
clearIsDirty() - Method in class edu.stanford.smi.protege.model.Project
clearListeners() - Method in class edu.stanford.smi.protege.model.framestore.EventDispatchFrameStore
clearListValues(JList) - Static method in class edu.stanford.smi.protege.util.ComponentUtilities
clearSelection() - Method in class edu.stanford.smi.protege.util.FileList
clearSelection() - Method in interface edu.stanford.smi.protege.util.Selectable
clearSelection() - Method in class edu.stanford.smi.protege.util.SelectableContainer
clearSelection() - Method in class edu.stanford.smi.protege.util.URIList
clearSelection() - Method in class edu.stanford.smi.protege.widget.AbstractWidget
clearSelection() - Method in class edu.stanford.smi.protege.widget.FormWidget
clearSelection() - Method in class edu.stanford.smi.protege.widget.InstanceValuesComponent
clearValue() - Method in class edu.stanford.smi.protege.util.IntegerField
ClientAndFrame - Class in edu.stanford.smi.protege.server.framestore.background
ClientAndFrame(RemoteSession, Frame) - Constructor for class edu.stanford.smi.protege.server.framestore.background.ClientAndFrame
ClientCacheRequestor - Class in edu.stanford.smi.protege.server.framestore.background
ClientCacheRequestor(RemoteServerFrameStore, RemoteSession) - Constructor for class edu.stanford.smi.protege.server.framestore.background.ClientCacheRequestor
ClientCacheRequestor.RequestorThread - Class in edu.stanford.smi.protege.server.framestore.background
ClientCacheRequestor.RequestorThread() - Constructor for class edu.stanford.smi.protege.server.framestore.background.ClientCacheRequestor.RequestorThread
ClientCacheRequestor.ThreadStatus - Enum in edu.stanford.smi.protege.server.framestore.background
ClientConnectMain - Class in edu.stanford.smi.protege.server
ClientConnectMain(String[]) - Constructor for class edu.stanford.smi.protege.server.ClientConnectMain
CLIPS_FILES_TO_EXPORT_DIALOG_TITLE - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
CLIPS_FILES_TO_IMPORT_DIALOG_TITLE - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
ClipsExportToNewFormatWizardPage - Class in edu.stanford.smi.protege.storage.clips
  TODO Class Comment
ClipsExportToNewFormatWizardPage(Wizard, Project, ClipsFilesExportProjectPlugin) - Constructor for class edu.stanford.smi.protege.storage.clips.ClipsExportToNewFormatWizardPage
ClipsFilePanel - Class in edu.stanford.smi.protege.storage.clips
ClipsFilePanel() - Constructor for class edu.stanford.smi.protege.storage.clips.ClipsFilePanel
ClipsFilesCreateProjectPlugin - Class in edu.stanford.smi.protege.storage.clips
  TODO Class Comment
ClipsFilesCreateProjectPlugin() - Constructor for class edu.stanford.smi.protege.storage.clips.ClipsFilesCreateProjectPlugin
ClipsFilesExportProjectPlugin - Class in edu.stanford.smi.protege.storage.clips
  Export plugins for the CLIPS file format.
ClipsFilesExportProjectPlugin() - Constructor for class edu.stanford.smi.protege.storage.clips.ClipsFilesExportProjectPlugin
ClipsFilesPlugin - Interface in edu.stanford.smi.protege.storage.clips
  TODO Class Comment
ClipsFilesWizardPage - Class in edu.stanford.smi.protege.storage.clips
  TODO Class Comment
ClipsFilesWizardPage(Wizard, ClipsFilesPlugin) - Constructor for class edu.stanford.smi.protege.storage.clips.ClipsFilesWizardPage
ClipsFileWriter - Class in edu.stanford.smi.protege.storage.clips
  Base class for classes which generate clips files.
ClipsFileWriter(Writer) - Constructor for class edu.stanford.smi.protege.storage.clips.ClipsFileWriter
ClipsImportExportPlugin - Class in edu.stanford.smi.protege.storage.clips
  Import and Export plugins for the CLIPS file format.
ClipsImportExportPlugin() - Constructor for class edu.stanford.smi.protege.storage.clips.ClipsImportExportPlugin
ClipsKnowledgeBaseFactory - Class in edu.stanford.smi.protege.storage.clips
  Storage backend to maintain a knowledge base in Clips 6.0 file format.
ClipsKnowledgeBaseFactory() - Constructor for class edu.stanford.smi.protege.storage.clips.ClipsKnowledgeBaseFactory
ClipsUtil - Class in edu.stanford.smi.protege.storage.clips
  Utilities for handling text io in clips file format.
ClipsUtil() - Constructor for class edu.stanford.smi.protege.storage.clips.ClipsUtil
clone() - Method in class edu.stanford.smi.protege.model.WidgetDescriptor
clone() - Method in class edu.stanford.smi.protege.util.HashList
  Deprecated. Returns a shallow copy of this `LinkedList` .
clone() - Method in class edu.stanford.smi.protege.util.PropertyList
clone() - Method in class edu.stanford.smi.protege.util.Tree
cloneSession(RemoteSession) - Method in interface edu.stanford.smi.protege.server.RemoteServer
cloneSession(RemoteSession) - Method in class edu.stanford.smi.protege.server.Server
close(Writer) - Method in class edu.stanford.smi.protege.model.AbstractKnowledgeBaseFactory
close(Reader) - Method in class edu.stanford.smi.protege.model.AbstractKnowledgeBaseFactory
close() - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
close() - Method in class edu.stanford.smi.protege.model.framestore.AbstractFrameStore
close() - Method in class edu.stanford.smi.protege.model.framestore.cleandispatch.CleanDispatchFrameStore
close() - Method in class edu.stanford.smi.protege.model.framestore.ClosureCachingBasicFrameStore
close() - Method in class edu.stanford.smi.protege.model.framestore.EventDispatchFrameStore
close() - Method in class edu.stanford.smi.protege.model.framestore.EventGeneratorFrameStore
close() - Method in interface edu.stanford.smi.protege.model.framestore.FrameStore
close() - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreManager
close() - Method in class edu.stanford.smi.protege.model.framestore.ImmutableNamesNarrowFrameStore
close() - Method in class edu.stanford.smi.protege.model.framestore.InMemoryFrameDb
close() - Method in class edu.stanford.smi.protege.model.framestore.MergingNarrowFrameStore
close() - Method in class edu.stanford.smi.protege.model.framestore.ModificationRecordFrameStore
close() - Method in interface edu.stanford.smi.protege.model.framestore.NarrowFrameStore
close() - Method in class edu.stanford.smi.protege.model.framestore.PlaceHolderNarrowFrameStore
close() - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
close() - Method in class edu.stanford.smi.protege.model.framestore.undo.UndoFrameStore
close() - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
close(RemoteSession) - Method in interface edu.stanford.smi.protege.server.framestore.RemoteServerFrameStore
close(RemoteSession) - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
close(RemoteSession) - Method in interface edu.stanford.smi.protege.server.narrowframestore.RemoteServerNarrowFrameStore
close(RemoteSession) - Method in class edu.stanford.smi.protege.server.narrowframestore.ServerNarrowFrameStore
close(RemoteSession) - Method in interface edu.stanford.smi.protege.server.RemoteServerProject
close() - Method in interface edu.stanford.smi.protege.server.RemoteSimpleStream
close(RemoteSession) - Method in class edu.stanford.smi.protege.server.ServerProject
close() - Method in class edu.stanford.smi.protege.server.SimpleStream
close() - Method in class edu.stanford.smi.protege.server.socket.CompressionAspect
close() - Method in class edu.stanford.smi.protege.server.socket.MonitoringAspect
close() - Method in class edu.stanford.smi.protege.server.socket.MonitoringInputStream
close() - Method in class edu.stanford.smi.protege.server.socket.MonitoringOutputStream
close() - Method in class edu.stanford.smi.protege.server.socket.SimulateDelayAspect
close() - Method in interface edu.stanford.smi.protege.server.socket.SocketAspect
close() - Method in class edu.stanford.smi.protege.server.socket.SocketWithAspects
close() - Method in class edu.stanford.smi.protege.server.socket.TeeAspect
close() - Method in class edu.stanford.smi.protege.server.socket.TeeOutputStream
close() - Method in class edu.stanford.smi.protege.server.util.ZipSocket
close() - Method in class edu.stanford.smi.protege.storage.database.AbstractDatabaseFrameDb
close() - Method in interface edu.stanford.smi.protege.storage.database.DatabaseFrameDb
close() - Method in class edu.stanford.smi.protege.storage.database.IdleConnectionNarrowFrameStore
close() - Method in class edu.stanford.smi.protege.storage.database.pool.ConnectionInfo
close() - Method in class edu.stanford.smi.protege.storage.database.ValueCachingNarrowFrameStore
close() - Method in class edu.stanford.smi.protege.ui.ProjectView
close(InputStream) - Static method in class edu.stanford.smi.protege.util.FileUtilities
close(Reader) - Static method in class edu.stanford.smi.protege.util.FileUtilities
close(Writer) - Static method in class edu.stanford.smi.protege.util.FileUtilities
close() - Method in class edu.stanford.smi.protege.widget.AbstractTabWidget
close() - Method in interface edu.stanford.smi.protege.widget.TabWidget
  Called when the user attempts to close a project and all tabs return 'true' from their #canClose() methods.
CLOSE_ALL_WINDOWS - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
CLOSE_BUTTON_LABEL - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
CLOSE_VIEW - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
CloseAllWindows - Class in edu.stanford.smi.protege.action
  Close all of the top-level windows except the main window
CloseAllWindows(boolean) - Constructor for class edu.stanford.smi.protege.action.CloseAllWindows
closeAllWindows() - Static method in class edu.stanford.smi.protege.util.ComponentUtilities
closeButton_actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protege.ui.IconDialog
closeButton_actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protege.ui.WelcomeDialog
closeCurrentProject() - Method in class edu.stanford.smi.protege.ui.ProjectManager
CloseCurrentView - Class in edu.stanford.smi.protege.action
CloseCurrentView() - Constructor for class edu.stanford.smi.protege.action.CloseCurrentView
closeCurrentView() - Method in class edu.stanford.smi.protege.ui.ProjectView
closed(ProjectViewEvent) - Method in interface edu.stanford.smi.protege.util.ProjectViewListener
CloseProject - Class in edu.stanford.smi.protege.action
  Request a close of the project.
CloseProject() - Constructor for class edu.stanford.smi.protege.action.CloseProject
closeProjectRequest() - Method in class edu.stanford.smi.protege.ui.ProjectManager
closeSession(RemoteSession) - Method in interface edu.stanford.smi.protege.server.RemoteServer
closeSession(RemoteSession) - Method in class edu.stanford.smi.protege.server.Server
closeStatements() - Method in class edu.stanford.smi.protege.storage.database.pool.ConnectionInfo
closeStatements(Connection) - Method in class edu.stanford.smi.protege.storage.database.pool.ConnectionPool
closeStatements() - Method in class edu.stanford.smi.protege.storage.database.RobustConnection
closeWindow(Window) - Static method in class edu.stanford.smi.protege.util.ComponentUtilities
ClosureCachingBasicFrameStore - Class in edu.stanford.smi.protege.model.framestore
ClosureCachingBasicFrameStore(NarrowFrameStore) - Constructor for class edu.stanford.smi.protege.model.framestore.ClosureCachingBasicFrameStore
ClosureUtils - Class in edu.stanford.smi.protege.model.framestore
ClosureUtils() - Constructor for class edu.stanford.smi.protege.model.framestore.ClosureUtils
Cls - Interface in edu.stanford.smi.protege.model
  A frame which has one or more superclasses, may have subclasses, and which exhibits inheritance behavior (such as inheritance of slots).
CLS - Static variable in class edu.stanford.smi.protege.model.ValueType
cls() - Method in class edu.stanford.smi.protege.storage.clips.Parser
CLS_CREATED - Static variable in class edu.stanford.smi.protege.event.KnowledgeBaseEvent
CLS_DELETED - Static variable in class edu.stanford.smi.protege.event.KnowledgeBaseEvent
ClsAdapter - Class in edu.stanford.smi.protege.event
  Adapter for the ClsListener interface.
ClsAdapter() - Constructor for class edu.stanford.smi.protege.event.ClsAdapter
ClsClsReferenceNode - Class in edu.stanford.smi.protege.ui
  A TreeNode that will display a relationship (other than inheritance) between two classes.
ClsClsReferenceNode(LazyTreeNode, Cls, Slot) - Constructor for class edu.stanford.smi.protege.ui.ClsClsReferenceNode
ClsClsReferenceRoot - Class in edu.stanford.smi.protege.ui
  A TreeRoot for Cls-Cls preferences.
ClsClsReferenceRoot(KnowledgeBase, Slot) - Constructor for class edu.stanford.smi.protege.ui.ClsClsReferenceRoot
ClsCode - Class in edu.stanford.smi.protege.code.generator.wrapping
  Code generator for a class.
ClsCode(Cls) - Constructor for class edu.stanford.smi.protege.code.generator.wrapping.ClsCode
clsCreated(KnowledgeBaseEvent) - Method in class edu.stanford.smi.protege.event.KnowledgeBaseAdapter
clsCreated(KnowledgeBaseEvent) - Method in interface edu.stanford.smi.protege.event.KnowledgeBaseListener
clsDeleted(KnowledgeBaseEvent) - Method in class edu.stanford.smi.protege.event.KnowledgeBaseAdapter
clsDeleted(KnowledgeBaseEvent) - Method in interface edu.stanford.smi.protege.event.KnowledgeBaseListener
ClsesAndInstancesTab - Class in edu.stanford.smi.protege.widget
  This tab is an attempt to merge the functionality of ClsesTab and the InstancesTab.
ClsesAndInstancesTab() - Constructor for class edu.stanford.smi.protege.widget.ClsesAndInstancesTab
clsesList() - Method in class edu.stanford.smi.protege.storage.clips.Parser
ClsesPanel - Class in edu.stanford.smi.protege.ui
  The left upper display of the classes tab.
ClsesPanel(Project) - Constructor for class edu.stanford.smi.protege.ui.ClsesPanel
ClsesTab - Class in edu.stanford.smi.protege.widget
  The classes tab.
ClsesTab() - Constructor for class edu.stanford.smi.protege.widget.ClsesTab
ClsesTreeDragSourceListener - Class in edu.stanford.smi.protege.ui
  Source listener drag and drop support for the SlotsTree.
ClsesTreeDragSourceListener() - Constructor for class edu.stanford.smi.protege.ui.ClsesTreeDragSourceListener
ClsesTreeTarget - Class in edu.stanford.smi.protege.ui
  Target support for Clses tree drag and drop support.
ClsesTreeTarget() - Constructor for class edu.stanford.smi.protege.ui.ClsesTreeTarget
ClsEvent - Class in edu.stanford.smi.protege.event
  Event generated when a class is changed.
ClsEvent(Cls, int, Object) - Constructor for class edu.stanford.smi.protege.event.ClsEvent
ClsEvent(Cls, int, Object, Object) - Constructor for class edu.stanford.smi.protege.event.ClsEvent
ClsEventDispatcher - Class in edu.stanford.smi.protege.event
  Dispatches Cls events to ClsListener instances.
ClsEventDispatcher() - Constructor for class edu.stanford.smi.protege.event.ClsEventDispatcher
ClsFieldWidget - Class in edu.stanford.smi.protege.widget
  SlotWidget for acquiring and displaying a cardinality single Cls object.
ClsFieldWidget() - Constructor for class edu.stanford.smi.protege.widget.ClsFieldWidget
ClsInverseRelationshipPanel - Class in edu.stanford.smi.protege.ui
  This panel displays the superclasses of a given class and allows the user to add or remove a superclass.
ClsInverseRelationshipPanel(Project) - Constructor for class edu.stanford.smi.protege.ui.ClsInverseRelationshipPanel
ClsListener - Interface in edu.stanford.smi.protege.event
  Listener for events resulting from a class change.
ClsListWidget - Class in edu.stanford.smi.protege.widget
  SlotWidget for acquiring and displaying a list of Cls objects.
ClsListWidget() - Constructor for class edu.stanford.smi.protege.widget.ClsListWidget
clsReference() - Method in class edu.stanford.smi.protege.storage.clips.Parser
ClsReferencersAction - Class in edu.stanford.smi.protege.action
ClsReferencersAction(Selectable) - Constructor for class edu.stanford.smi.protege.action.ClsReferencersAction
clsRole(Cls) - Method in class edu.stanford.smi.protege.storage.clips.Parser
ClsStorer - Class in edu.stanford.smi.protege.storage.clips
  Store a set of classes in Clips ontology file format Clips requires that clses be stored so that there are no forward references so we start at root and descend the class hierarchy writing out classes whose parents have already been written out.
ClsStorer(Writer) - Constructor for class edu.stanford.smi.protege.storage.clips.ClsStorer
ClsTreeFinder - Class in edu.stanford.smi.protege.ui
  Implementation of the Finder interface to locate and highlight classes whose names match a given string.
ClsTreeFinder(KnowledgeBase, JTree) - Constructor for class edu.stanford.smi.protege.ui.ClsTreeFinder
ClsTreeFinder(KnowledgeBase, JTree, ResourceKey) - Constructor for class edu.stanford.smi.protege.ui.ClsTreeFinder
ClsTreeFinder(KnowledgeBase, JTree, String) - Constructor for class edu.stanford.smi.protege.ui.ClsTreeFinder
ClsTreeFinder(KnowledgeBase, JTree, String, Icon) - Constructor for class edu.stanford.smi.protege.ui.ClsTreeFinder
ClsWidget - Interface in edu.stanford.smi.protege.widget
  The interface for display forms that display the contents of an entire class and all the contents to be edited.
CODE_MENU - Static variable in class edu.stanford.smi.protege.code.generator.wrapping.CodeGeneratorProjectPlugin
CodeGeneratorProjectPlugin - Class in edu.stanford.smi.protege.code.generator.wrapping
CodeGeneratorProjectPlugin() - Constructor for class edu.stanford.smi.protege.code.generator.wrapping.CodeGeneratorProjectPlugin
COLLECTION_TYPE - Static variable in interface edu.stanford.smi.protege.model.Model.Facet
COLLECTION_TYPE - Static variable in interface edu.stanford.smi.protege.model.Model.FacetID
COLLECTION_TYPE - Static variable in interface edu.stanford.smi.protege.model.Model.Slot
COLLECTION_TYPE - Static variable in interface edu.stanford.smi.protege.model.Model.SlotID
CollectionUtilities - Class in edu.stanford.smi.protege.util
  Description of the class
CollectionUtilities() - Constructor for class edu.stanford.smi.protege.util.CollectionUtilities
Colors - Class in edu.stanford.smi.protege.resource
Colors() - Constructor for class edu.stanford.smi.protege.resource.Colors
column - Variable in class edu.stanford.smi.protege.storage.clips.SimpleCharStream
Column - Enum in edu.stanford.smi.protege.storage.database.stmt
comboBoxValueChanged() - Method in class edu.stanford.smi.protege.widget.ComboBoxWidget
comboBoxValueChanged() - Method in class edu.stanford.smi.protege.widget.RoleWidget
ComboBoxWidget - Class in edu.stanford.smi.protege.widget
  Slot widget for displaying the "allowed values" of a value-type=Symbol slot.
ComboBoxWidget() - Constructor for class edu.stanford.smi.protege.widget.ComboBoxWidget
Command - Interface in edu.stanford.smi.protege.model.framestore.undo
COMMAND_HISTORY_ACTION - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
COMMAND_HISTORY_DIALOG_TITLE - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
CommandHistoryPanel - Class in edu.stanford.smi.protege.ui
  Panel to display the commands that have been executed an allow the user to undo/redo them.
CommandHistoryPanel(CommandManager) - Constructor for class edu.stanford.smi.protege.ui.CommandHistoryPanel
CommandManager - Interface in edu.stanford.smi.protege.model
commaSeparatedList(Collection) - Static method in class edu.stanford.smi.protege.util.StringUtilities
COMMENT - Static variable in interface edu.stanford.smi.protege.storage.clips.ParserConstants
  RegularExpression Id.
COMMENT_LINE - Static variable in interface edu.stanford.smi.protege.storage.clips.ParserConstants
  RegularExpression Id.
commit() - Method in class edu.stanford.smi.protege.storage.database.RobustConnection
commitChanges() - Method in class edu.stanford.smi.protege.ui.EncodingsPanel
commitChanges() - Method in class edu.stanford.smi.protege.widget.TextComponentWidget
commitTransaction() - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
commitTransaction() - Method in class edu.stanford.smi.protege.model.framestore.ArgumentCheckingFrameStore
commitTransaction() - Method in class edu.stanford.smi.protege.model.framestore.ChangeMonitorFrameStore
commitTransaction() - Method in class edu.stanford.smi.protege.model.framestore.ClosureCachingBasicFrameStore
commitTransaction() - Method in class edu.stanford.smi.protege.model.framestore.EventDispatchFrameStore
commitTransaction() - Method in class edu.stanford.smi.protege.model.framestore.EventGeneratorFrameStore
commitTransaction() - Method in interface edu.stanford.smi.protege.model.framestore.FrameStore
commitTransaction() - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreAdapter
commitTransaction() - Method in class edu.stanford.smi.protege.model.framestore.ImmutableNamesNarrowFrameStore
commitTransaction() - Method in class edu.stanford.smi.protege.model.framestore.InMemoryFrameDb
commitTransaction() - Method in class edu.stanford.smi.protege.model.framestore.MergingNarrowFrameStore
commitTransaction() - Method in class edu.stanford.smi.protege.model.framestore.ModificationRecordFrameStore
commitTransaction() - Method in interface edu.stanford.smi.protege.model.framestore.NarrowFrameStore
commitTransaction() - Method in class edu.stanford.smi.protege.model.framestore.PlaceHolderNarrowFrameStore
commitTransaction() - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
commitTransaction() - Method in class edu.stanford.smi.protege.model.framestore.TemplateFrameStore
commitTransaction() - Method in class edu.stanford.smi.protege.model.framestore.TransactionFrameStore
commitTransaction() - Method in class edu.stanford.smi.protege.model.framestore.undo.UndoFrameStore
commitTransaction() - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
  Commits the recently opened transaction
commitTransaction() - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
commitTransaction(RemoteSession) - Method in interface edu.stanford.smi.protege.server.framestore.RemoteServerFrameStore
commitTransaction(RemoteSession) - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
commitTransaction(RemoteSession) - Method in interface edu.stanford.smi.protege.server.narrowframestore.RemoteServerNarrowFrameStore
commitTransaction(RemoteSession) - Method in class edu.stanford.smi.protege.server.narrowframestore.ServerNarrowFrameStore
commitTransaction(RemoteSession) - Method in class edu.stanford.smi.protege.server.update.DeferredOperationCache
commitTransaction() - Method in class edu.stanford.smi.protege.storage.database.AbstractDatabaseFrameDb
commitTransaction() - Method in class edu.stanford.smi.protege.storage.database.DefaultDatabaseFrameDb
commitTransaction() - Method in class edu.stanford.smi.protege.storage.database.IdleConnectionNarrowFrameStore
commitTransaction() - Method in class edu.stanford.smi.protege.storage.database.RobustConnection
commitTransaction() - Method in class edu.stanford.smi.protege.storage.database.ValueCachingNarrowFrameStore
commitTransaction(S) - Method in interface edu.stanford.smi.protege.util.transaction.cache.Cache
  A transaction is committed.
commitTransaction(S) - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.BasicCache
commitTransaction(S) - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.CompleteableCache
commitTransaction(S) - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.InvalidatableCache
commitTransaction(S) - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.ReadCommittedCache
commitTransaction(S) - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.ReadUncommittedCache
commitTransaction(S) - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.RepeatableReadCache
commitTransaction() - Method in class edu.stanford.smi.protege.util.transaction.TransactionMonitor
commitTransaction() - Method in class edu.stanford.smi.protege.widget.AbstractWidget
compare(Object, Object) - Method in class edu.stanford.smi.protege.ui.BrowserComparator
compare(X, X) - Method in class edu.stanford.smi.protege.ui.FrameComparator
compare(Object, Object) - Method in class edu.stanford.smi.protege.ui.FrameNameComparator
compare(Object, Object) - Method in class edu.stanford.smi.protege.ui.FrameSlotPairComparator
compare(Object, Object) - Method in class edu.stanford.smi.protege.ui.LazyTreeNodeFrameComparator
compare(Object, Object) - Method in class edu.stanford.smi.protege.ui.LocaleComparator
compare(Object, Object) - Method in class edu.stanford.smi.protege.ui.ParentChildNodeComparator
compare(Reference, Reference) - Method in class edu.stanford.smi.protege.ui.ReferenceComparator
compare(FrameWithBrowserText, FrameWithBrowserText) - Method in class edu.stanford.smi.protege.util.FrameWithBrowserTextComparator
compare(Object, Object) - Method in class edu.stanford.smi.protege.widget.SlotWidgetComparer
compareTo(SlotAtClassCode) - Method in class edu.stanford.smi.protege.code.generator.wrapping.SlotAtClassCode
compareTo(Object) - Method in class edu.stanford.smi.protege.code.generator.wrapping.SlotCode
compareTo(Frame) - Method in class edu.stanford.smi.protege.model.DefaultFrame
compareTo(Object) - Method in class edu.stanford.smi.protege.model.ValueType
compareTo(WorkInfo) - Method in class edu.stanford.smi.protege.server.framestore.background.WorkInfo
compareTo(Object, Object) - Method in class edu.stanford.smi.protege.util.LazyTreeNode
CompleteableCache<S,V,R> - Class in edu.stanford.smi.protege.util.transaction.cache.impl
  This is a basic cache that takes the behavior of its delegate.
CompleteableCache(Cache<S, V, R>) - Constructor for class edu.stanford.smi.protege.util.transaction.cache.impl.CompleteableCache
COMPONENT_MENU - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
ComponentFactory - Class in edu.stanford.smi.protege.util
  Factory class for making swing components, and their variants.
ComponentFactory() - Constructor for class edu.stanford.smi.protege.util.ComponentFactory
ComponentUtilities - Class in edu.stanford.smi.protege.util
  Utility methods for dealing with various swing components.
ComponentUtilities() - Constructor for class edu.stanford.smi.protege.util.ComponentUtilities
COMPOSITE - Static variable in interface edu.stanford.smi.protege.storage.clips.ParserConstants
  RegularExpression Id.
CompressingInputStream - Class in edu.stanford.smi.protege.server.socket.deflate
  This code is based on the ideas presented in `http://javatechniques.com/blog/compressing-data-sent-over-a-socket/` by Philip Isenhour.
CompressingInputStream(InputStream) - Constructor for class edu.stanford.smi.protege.server.socket.deflate.CompressingInputStream
CompressingOutputStream - Class in edu.stanford.smi.protege.server.socket.deflate
  This code is based on the ideas presented in `http://javatechniques.com/blog/compressing-data-sent-over-a-socket/` by Philip Isenhour.
CompressingOutputStream(OutputStream) - Constructor for class edu.stanford.smi.protege.server.socket.deflate.CompressingOutputStream
COMPRESSION_PAD - Static variable in class edu.stanford.smi.protege.server.socket.deflate.CompressingOutputStream
CompressionAspect - Class in edu.stanford.smi.protege.server.socket
CompressionAspect(SocketAspect) - Constructor for class edu.stanford.smi.protege.server.socket.CompressionAspect
CONCRETE - Static variable in class edu.stanford.smi.protege.model.RoleConstraint
CONCRETE - Static variable in interface edu.stanford.smi.protege.storage.clips.ParserConstants
  RegularExpression Id.
ConcurrentListModel - Class in edu.stanford.smi.protege.util
  This class is a trivial extension of the SimpleListModel.
ConcurrentListModel() - Constructor for class edu.stanford.smi.protege.util.ConcurrentListModel
configure(ProjectView) - Static method in class edu.stanford.smi.protege.server.util.RemoteProjectUtil
configure() - Method in class edu.stanford.smi.protege.widget.AbstractSlotWidget
configure() - Method in class edu.stanford.smi.protege.widget.AbstractTabWidget
configure() - Method in class edu.stanford.smi.protege.widget.FormWidget
configure() - Method in class edu.stanford.smi.protege.widget.KAToolTab
configure() - Method in class edu.stanford.smi.protege.widget.UglyClsWidget
configure() - Method in interface edu.stanford.smi.protege.widget.Widget
CONFIGURE_ARCHIVE_DIALOG_TITLE - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
ConfigureAction - Class in edu.stanford.smi.protege.ui
  TODO Class Comment
ConfigureAction() - Constructor for class edu.stanford.smi.protege.ui.ConfigureAction
ConfigureArchive - Class in edu.stanford.smi.protege.action
ConfigureArchive() - Constructor for class edu.stanford.smi.protege.action.ConfigureArchive
ConfigureArchivePanel - Class in edu.stanford.smi.protege.action
ConfigureArchivePanel(Project) - Constructor for class edu.stanford.smi.protege.action.ConfigureArchivePanel
configureCls(Cls) - Method in class edu.stanford.smi.protege.model.framestore.DefaultFrameFactory
configureFacet(Facet) - Method in class edu.stanford.smi.protege.model.framestore.DefaultFrameFactory
ConfigureProject - Class in edu.stanford.smi.protege.action
  Bring up the configuration panel for the current project.
ConfigureProject() - Constructor for class edu.stanford.smi.protege.action.ConfigureProject
ConfigureProjectPanel - Class in edu.stanford.smi.protege.ui
  The global configuration panel.
ConfigureProjectPanel(Project) - Constructor for class edu.stanford.smi.protege.ui.ConfigureProjectPanel
configureProjectRequest() - Method in class edu.stanford.smi.protege.ui.ProjectManager
ConfigureProtegePropertiesPanel - Class in edu.stanford.smi.protege.ui
  Configuration panel for setting the proteg.properties and protege LAX properties
ConfigureProtegePropertiesPanel(Project) - Constructor for class edu.stanford.smi.protege.ui.ConfigureProtegePropertiesPanel
configureSimpleInstance(SimpleInstance) - Method in class edu.stanford.smi.protege.model.framestore.DefaultFrameFactory
configureSlot(Slot) - Method in class edu.stanford.smi.protege.model.framestore.DefaultFrameFactory
configureTable(JTable) - Static method in class edu.stanford.smi.protege.util.ComponentFactory
configureTable(JTable) - Method in class edu.stanford.smi.protege.widget.AbstractTableWidget
configureTree(JTree, Action) - Static method in class edu.stanford.smi.protege.util.ComponentFactory
connect() - Method in class edu.stanford.smi.protege.server.ClientConnectMain
ConnectionInfo - Class in edu.stanford.smi.protege.storage.database.pool
ConnectionInfo(Connection) - Constructor for class edu.stanford.smi.protege.storage.database.pool.ConnectionInfo
ConnectionPool - Class in edu.stanford.smi.protege.storage.database.pool
  A Connection Pool
connectToMetaProject(RemoteServer, RemoteSession) - Method in class edu.stanford.smi.protege.server.RemoteProjectManager
connectToProject(RemoteServer, RemoteSession, String) - Method in class edu.stanford.smi.protege.server.RemoteProjectManager
ConsoleFormatter - Class in edu.stanford.smi.protege.util
  TODO Class Comment
ConsoleFormatter() - Constructor for class edu.stanford.smi.protege.util.ConsoleFormatter
constant() - Method in class edu.stanford.smi.protege.storage.clips.Parser
constants() - Method in class edu.stanford.smi.protege.storage.clips.Parser
CONSTRAINT - Static variable in interface edu.stanford.smi.protege.model.Model.Cls
CONSTRAINT - Static variable in interface edu.stanford.smi.protege.model.Model.ClsID
CONSTRAINTS - Static variable in interface edu.stanford.smi.protege.model.Model.Facet
CONSTRAINTS - Static variable in interface edu.stanford.smi.protege.model.Model.FacetID
CONSTRAINTS - Static variable in interface edu.stanford.smi.protege.model.Model.Slot
CONSTRAINTS - Static variable in interface edu.stanford.smi.protege.model.Model.SlotID
CONSTRAINTS_SLOT_WIDGET_LABEL - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
ConstraintsWidget - Class in edu.stanford.smi.protege.widget
  SlotWidget for displaying "constraints".
ConstraintsWidget() - Constructor for class edu.stanford.smi.protege.widget.ConstraintsWidget
constraintValueDescription(Cls, Slot) - Method in class edu.stanford.smi.protege.storage.clips.Parser
constraintValueDescriptionExtension(Cls, Slot) - Method in class edu.stanford.smi.protege.storage.clips.Parser
contains(Slot) - Method in class edu.stanford.smi.protege.model.BrowserSlotPattern
CONTAINS - Static variable in interface edu.stanford.smi.protege.model.query.Query
contains(Object) - Method in class edu.stanford.smi.protege.util.ConcurrentListModel
contains(Object) - Method in class edu.stanford.smi.protege.util.HashList
  Deprecated. Returns `true` if this list contains the specified element.
contains(Object) - Method in class edu.stanford.smi.protege.util.SimpleListModel
contains(Object) - Method in class edu.stanford.smi.protege.widget.AbstractListWidget
containSameItems(Collection, Collection) - Static method in class edu.stanford.smi.protege.util.CollectionUtilities
containsAny(Collection, Collection) - Static method in class edu.stanford.smi.protege.util.CollectionUtilities
  Returns true if there is any element that is common to both collections.
containsFrame(String) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
containsFrame(String) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
containsFrame(Frame) - Method in interface edu.stanford.smi.protege.model.Storage
containsFrame(String) - Method in interface edu.stanford.smi.protege.model.Storage
ControlFrameCalculatorCachingJob - Class in edu.stanford.smi.protege.util
ControlFrameCalculatorCachingJob(KnowledgeBase, boolean) - Constructor for class edu.stanford.smi.protege.util.ControlFrameCalculatorCachingJob
ControlServerPanel - Class in edu.stanford.smi.protege.server.admin
ControlServerPanel(RemoteServer, RemoteSession) - Constructor for class edu.stanford.smi.protege.server.admin.ControlServerPanel
CONVERT_UNICODE_SEQUENCE_ACTION - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
convertToNumber(String) - Method in class edu.stanford.smi.protege.util.FloatValidator
convertToNumber(String) - Method in class edu.stanford.smi.protege.util.IntegerValidator
convertToNumber(String) - Method in interface edu.stanford.smi.protege.util.NumberValidator
ConvertUnicodeSequenceAction - Class in edu.stanford.smi.protege.action
ConvertUnicodeSequenceAction() - Constructor for class edu.stanford.smi.protege.action.ConvertUnicodeSequenceAction
Copy - Class in edu.stanford.smi.protege.action
  TODO Class Comment
Copy(boolean) - Constructor for class edu.stanford.smi.protege.action.Copy
copy(int, boolean) - Method in class edu.stanford.smi.protege.action.MakeCopiesAction
copy(Instance, boolean) - Method in class edu.stanford.smi.protege.action.MakeCopiesAction
copy(KnowledgeBase, Map, boolean) - Method in class edu.stanford.smi.protege.model.DefaultFrame
copy(KnowledgeBase, Map, boolean) - Method in class edu.stanford.smi.protege.model.DefaultInstance
copy(KnowledgeBase, Map, boolean) - Method in interface edu.stanford.smi.protege.model.Frame
COPY_ACTION - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
COPY_DIALOG_TITLE - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
copyClientInformation(KnowledgeBase, KnowledgeBase, KnowledgeBase, boolean) - Static method in class edu.stanford.smi.protege.model.Project
  Utility method that copies the client information from the source project KB to a target project KB.
create(Class) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreManager
create(Instance) - Static method in class edu.stanford.smi.protege.model.WidgetDescriptor
create(KnowledgeBase) - Static method in class edu.stanford.smi.protege.model.WidgetDescriptor
create(KnowledgeBase) - Static method in class edu.stanford.smi.protege.util.PropertyList
CREATE_ACCESSOR - Static variable in interface edu.stanford.smi.protege.storage.clips.ParserConstants
  RegularExpression Id.
createAccessorFacet(Cls, Slot) - Method in class edu.stanford.smi.protege.storage.clips.Parser
CreateAction - Class in edu.stanford.smi.protege.util
  Base class for the create operation that is available on most widgets.
CreateAction(ResourceKey) - Constructor for class edu.stanford.smi.protege.util.CreateAction
CreateAction(String) - Constructor for class edu.stanford.smi.protege.util.CreateAction
CreateAction(String, Icon) - Constructor for class edu.stanford.smi.protege.util.CreateAction
createActions() - Method in class edu.stanford.smi.protege.widget.TextComponentWidget
createActions() - Method in class edu.stanford.smi.protege.widget.URLWidget
createAll() - Method in class edu.stanford.smi.protege.code.generator.wrapping.JavaCodeGenerator
createBufferedReader(String) - Static method in class edu.stanford.smi.protege.util.FileUtilities
createBufferedReader(File) - Static method in class edu.stanford.smi.protege.util.FileUtilities
createBufferedReader(InputStream) - Static method in class edu.stanford.smi.protege.util.FileUtilities
createBufferedReader(URI) - Static method in class edu.stanford.smi.protege.util.URIUtilities
createBufferedWriter(File, boolean) - Static method in class edu.stanford.smi.protege.util.FileUtilities
createBufferedWriter(String) - Static method in class edu.stanford.smi.protege.util.FileUtilities
createBufferedWriter(File) - Static method in class edu.stanford.smi.protege.util.FileUtilities
createBufferedWriter(URI, boolean) - Static method in class edu.stanford.smi.protege.util.URIUtilities
createBuildProject(KnowledgeBaseFactory, Collection) - Static method in class edu.stanford.smi.protege.model.Project
createBuildProject(KnowledgeBase, Collection) - Static method in class edu.stanford.smi.protege.model.Project
createButton(Action) - Static method in class edu.stanford.smi.protege.util.ComponentFactory
createCenterComponent() - Method in class edu.stanford.smi.protege.server.admin.AbstractRefreshableServerPanel
createCenterComponent() - Method in class edu.stanford.smi.protege.server.admin.ControlServerPanel
createCenterComponent() - Method in class edu.stanford.smi.protege.server.admin.MetaprojectPanel
createCenterComponent() - Method in class edu.stanford.smi.protege.server.admin.ProjectsServerPanel
createCenterComponent() - Method in class edu.stanford.smi.protege.server.admin.SessionServerPanel
createCenterComponent(JTextComponent) - Method in class edu.stanford.smi.protege.widget.DigestedPasswordWidget
createCenterComponent(JTextComponent) - Method in class edu.stanford.smi.protege.widget.ImageWidget
createCenterComponent(JTextComponent) - Method in class edu.stanford.smi.protege.widget.TextAreaWidget
createCenterComponent(JTextComponent) - Method in class edu.stanford.smi.protege.widget.TextComponentWidget
createCenterComponent(JTextComponent) - Method in class edu.stanford.smi.protege.widget.TextFieldWidget
createCenterComponent(JTextComponent) - Method in class edu.stanford.smi.protege.widget.URLWidget
createCheckBox() - Static method in class edu.stanford.smi.protege.util.ComponentFactory
createCheckBox(String) - Static method in class edu.stanford.smi.protege.util.ComponentFactory
createCheckBox() - Method in class edu.stanford.smi.protege.widget.CheckBoxWidget
createCheckBoxMenuItem(Action, boolean) - Static method in class edu.stanford.smi.protege.util.ComponentFactory
createCls(String, Collection, Collection, boolean) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
createCls(FrameID, Collection, Collection, boolean) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
createCls(String, Collection) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
createCls(String, Collection, Cls) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
createCls(String, Collection, Cls, boolean) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
createCls(FrameID, Collection) - Method in interface edu.stanford.smi.protege.model.FrameFactory
createCls(FrameID, Collection, Collection, boolean) - Method in class edu.stanford.smi.protege.model.framestore.ArgumentCheckingFrameStore
createCls(FrameID, Collection, Collection, boolean) - Method in class edu.stanford.smi.protege.model.framestore.ChangeMonitorFrameStore
createCls(FrameID, Collection) - Method in class edu.stanford.smi.protege.model.framestore.DefaultFrameFactory
createCls(FrameID, Class) - Method in class edu.stanford.smi.protege.model.framestore.DefaultFrameFactory
createCls(FrameID, Collection, Collection, boolean) - Method in class edu.stanford.smi.protege.model.framestore.EventDispatchFrameStore
createCls(FrameID, Collection, Collection, boolean) - Method in class edu.stanford.smi.protege.model.framestore.EventGeneratorFrameStore
createCls(FrameID, Collection, Collection, boolean) - Method in class edu.stanford.smi.protege.model.framestore.FacetCheckingFrameStore
createCls(FrameID, Collection, Collection, boolean) - Method in interface edu.stanford.smi.protege.model.framestore.FrameStore
createCls(FrameID, Collection, Collection, boolean) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreAdapter
createCls(FrameID, Collection, Collection, boolean) - Method in class edu.stanford.smi.protege.model.framestore.ImmutableNamesFrameStore
createCls(FrameID, Collection, Collection, boolean) - Method in class edu.stanford.smi.protege.model.framestore.ModificationRecordFrameStore
createCls(FrameID, Collection, Collection, boolean) - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
createCls(FrameID, Collection) - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
createCls(FrameID, Collection, Collection, boolean) - Method in class edu.stanford.smi.protege.model.framestore.TemplateFrameStore
createCls(FrameID, Collection, Collection, boolean) - Method in class edu.stanford.smi.protege.model.framestore.undo.UndoFrameStore
createCls(String, Collection) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
createCls(String, Collection, Cls) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
createCls(String, Collection, Cls, boolean) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
createCls(FrameID, Collection, Collection, boolean) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
createCls(FrameID, Collection, Collection, boolean) - Method in class edu.stanford.smi.protege.server.framestore.FrameCalculatorFrameStore
createCls(FrameID, Collection, Collection, boolean) - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
createCls(FrameID, Collection, Collection, boolean, RemoteSession) - Method in interface edu.stanford.smi.protege.server.framestore.RemoteServerFrameStore
createCls(FrameID, Collection, Collection, boolean, RemoteSession) - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
CreateClsAction - Class in edu.stanford.smi.protege.action
CreateClsAction() - Constructor for class edu.stanford.smi.protege.action.CreateClsAction
createClsBrowserHeader() - Method in class edu.stanford.smi.protege.ui.ClsesPanel
createClsDisplay() - Method in class edu.stanford.smi.protege.widget.ClsesTab
createClsesField() - Method in class edu.stanford.smi.protege.storage.clips.FileSourcesPanel
createClsesLabeledComponent(KnowledgeBase, Collection) - Method in class edu.stanford.smi.protege.ui.SelectInstancesPanel
createClsesPanel() - Method in class edu.stanford.smi.protege.widget.ClsesTab
createClsesSplitter() - Method in class edu.stanford.smi.protege.widget.ClsesTab
createClsTree(Collection) - Method in class edu.stanford.smi.protege.ui.SelectInstancesPanel
createClsWidget(WidgetDescriptor, boolean, Project, Cls) - Static method in class edu.stanford.smi.protege.widget.WidgetUtilities
createCollapseAllAction() - Method in class edu.stanford.smi.protege.ui.SubslotPane
createCollection(String) - Method in class edu.stanford.smi.protege.server.metaproject.impl.MetaProjectImpl
createCollection() - Method in class edu.stanford.smi.protege.util.ArrayListMultiMap
createCollection(X) - Static method in class edu.stanford.smi.protege.util.CollectionUtilities
createCollection() - Method in class edu.stanford.smi.protege.util.ListMultiMap
  Deprecated.
createCollection() - Method in class edu.stanford.smi.protege.util.MultiMap
createCollection() - Method in class edu.stanford.smi.protege.util.SetMultiMap
createComboBox() - Static method in class edu.stanford.smi.protege.util.ComponentFactory
createComboBox() - Method in class edu.stanford.smi.protege.widget.ComboBoxWidget
createConfigureAction() - Method in class edu.stanford.smi.protege.ui.ClsesPanel
createConfigureAction() - Method in class edu.stanford.smi.protege.ui.DirectInstancesList
createConnection() - Method in class edu.stanford.smi.protege.storage.database.AbstractDatabaseFrameDb
createCopyAction() - Method in class edu.stanford.smi.protege.ui.DirectInstancesList
createCreateAction() - Method in class edu.stanford.smi.protege.ui.DirectInstancesList
createCreateInstanceAction() - Method in class edu.stanford.smi.protege.ui.InstanceField
createCreateProjectWizardPage(CreateProjectWizard, boolean) - Method in interface edu.stanford.smi.protege.plugin.CreateProjectPlugin
createCreateProjectWizardPage(CreateProjectWizard, boolean) - Method in class edu.stanford.smi.protege.storage.clips.ClipsFilesCreateProjectPlugin
createCreateProjectWizardPage(CreateProjectWizard, boolean) - Method in class edu.stanford.smi.protege.storage.database.DatabaseCreateProjectPlugin
createDatabaseFrameDb(Class<? extends DatabaseFrameDb>) - Static method in class edu.stanford.smi.protege.storage.database.DatabaseFrameDbFactory
createDeleteAction() - Method in class edu.stanford.smi.protege.ui.DirectInstancesList
createDeleteInstancesAction() - Method in class edu.stanford.smi.protege.ui.InstanceField
createDescriptorsAndWidgets(Collection) - Method in class edu.stanford.smi.protege.widget.FormWidget
createDialog(Component) - Method in class edu.stanford.smi.protege.util.ProjectChooser
createDirectAllInstanceComboBox() - Method in class edu.stanford.smi.protege.ui.SelectInstancesPanel
createDirectInstance(String) - Method in interface edu.stanford.smi.protege.model.Cls
createDirectInstance(String) - Method in class edu.stanford.smi.protege.model.DefaultCls
createDirectInstancesList() - Method in class edu.stanford.smi.protege.widget.InstancesTab
createDirectTypesList() - Method in class edu.stanford.smi.protege.widget.ClsesAndInstancesTab
createDirectTypesList() - Method in class edu.stanford.smi.protege.widget.InstancesTab
createDomainKnowledgeBase(KnowledgeBaseFactory, Collection, boolean) - Method in class edu.stanford.smi.protege.model.Project
createDriverComponent() - Method in class edu.stanford.smi.protege.storage.database.DatabaseKnowledgeBaseSourcesEditor
createEditorPane() - Static method in class edu.stanford.smi.protege.util.ComponentFactory
createEditPasswordAction() - Method in class edu.stanford.smi.protege.widget.DigestedPasswordWidget
createEmptyCache(KnowledgeBase) - Static method in class edu.stanford.smi.protege.util.transaction.cache.CacheFactory
createEmptyCache(TransactionIsolationLevel) - Static method in class edu.stanford.smi.protege.util.transaction.cache.CacheFactory
createExpandAllAction() - Method in class edu.stanford.smi.protege.ui.SubslotPane
createExportToNewFormatWizardPage(ExportWizard, Project) - Method in class edu.stanford.smi.protege.storage.clips.ClipsFilesExportProjectPlugin
createExportWizardPage(ExportWizard, Project) - Method in interface edu.stanford.smi.protege.plugin.ExportProjectPlugin
createExportWizardPage(ExportWizard, Project) - Method in class edu.stanford.smi.protege.storage.clips.ClipsFilesExportProjectPlugin
createFacet(String) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
createFacet(String, Cls) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
createFacet(String, Cls, boolean) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
createFacet(FrameID, Collection, boolean) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
createFacet(FrameID, Collection) - Method in interface edu.stanford.smi.protege.model.FrameFactory
createFacet(FrameID, Collection, boolean) - Method in class edu.stanford.smi.protege.model.framestore.ArgumentCheckingFrameStore
createFacet(FrameID, Collection, boolean) - Method in class edu.stanford.smi.protege.model.framestore.ChangeMonitorFrameStore
createFacet(FrameID, Collection) - Method in class edu.stanford.smi.protege.model.framestore.DefaultFrameFactory
createFacet(FrameID, Class) - Method in class edu.stanford.smi.protege.model.framestore.DefaultFrameFactory
createFacet(FrameID, Collection, boolean) - Method in class edu.stanford.smi.protege.model.framestore.EventDispatchFrameStore
createFacet(FrameID, Collection, boolean) - Method in class edu.stanford.smi.protege.model.framestore.EventGeneratorFrameStore
createFacet(FrameID, Collection, boolean) - Method in class edu.stanford.smi.protege.model.framestore.FacetCheckingFrameStore
createFacet(FrameID, Collection, boolean) - Method in interface edu.stanford.smi.protege.model.framestore.FrameStore
createFacet(FrameID, Collection, boolean) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreAdapter
createFacet(FrameID, Collection, boolean) - Method in class edu.stanford.smi.protege.model.framestore.ImmutableNamesFrameStore
createFacet(FrameID, Collection, boolean) - Method in class edu.stanford.smi.protege.model.framestore.ModificationRecordFrameStore
createFacet(FrameID, Collection, boolean) - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
createFacet(FrameID, Collection) - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
createFacet(FrameID, Collection, boolean) - Method in class edu.stanford.smi.protege.model.framestore.TemplateFrameStore
createFacet(FrameID, Collection, boolean) - Method in class edu.stanford.smi.protege.model.framestore.undo.UndoFrameStore
createFacet(String) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
createFacet(String, Cls) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
createFacet(String, Cls, boolean) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
createFacet(FrameID, Collection, boolean) - Method in class edu.stanford.smi.protege.server.framestore.FrameCalculatorFrameStore
createFacet(FrameID, Collection, boolean) - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
createFacet(FrameID, Collection, boolean, RemoteSession) - Method in interface edu.stanford.smi.protege.server.framestore.RemoteServerFrameStore
createFacet(FrameID, Collection, boolean, RemoteSession) - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
createFactoryClass() - Method in class edu.stanford.smi.protege.code.generator.wrapping.JavaCodeGenerator
createField() - Method in class edu.stanford.smi.protege.storage.xml.FileSourcesPanel
createFileChooser(String, String) - Static method in class edu.stanford.smi.protege.util.ComponentFactory
createFileChooser(String, String, String) - Static method in class edu.stanford.smi.protege.util.ComponentFactory
createFileChooser(String, ExtensionFilter) - Static method in class edu.stanford.smi.protege.util.ComponentFactory
createFooterComponent() - Method in class edu.stanford.smi.protege.server.admin.AbstractRefreshableServerPanel
createFrame(Cls, Slot) - Method in class edu.stanford.smi.protege.model.Project
createFrame(Instance) - Method in class edu.stanford.smi.protege.model.Project
createFrame(InstanceDisplay, Object) - Method in class edu.stanford.smi.protege.model.Project
createFrame() - Static method in class edu.stanford.smi.protege.util.ComponentFactory
createFrameFactory() - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
createFrameFromClassId(int, FrameID) - Method in interface edu.stanford.smi.protege.model.FrameFactory
createFrameFromClassId(int, FrameID) - Method in class edu.stanford.smi.protege.model.framestore.DefaultFrameFactory
createFrameStoreManager() - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
createFromSerialization(KnowledgeBase, String) - Static method in class edu.stanford.smi.protege.model.BrowserSlotPattern
createGroup(String) - Method in class edu.stanford.smi.protege.server.metaproject.impl.MetaProjectImpl
createGroup(String) - Method in interface edu.stanford.smi.protege.server.metaproject.MetaProject
createGroupOperation() - Method in class edu.stanford.smi.protege.server.metaproject.impl.MetaProjectImpl
createGroupOperation() - Method in interface edu.stanford.smi.protege.server.metaproject.MetaProject
createHeaderComponent() - Method in class edu.stanford.smi.protege.ui.InstanceDisplay
createHomeAction() - Method in class edu.stanford.smi.protege.widget.URLWidget
createHTMLBrowser(URL) - Static method in class edu.stanford.smi.protege.util.ComponentFactory
createImplementation(Cls) - Method in class edu.stanford.smi.protege.code.generator.wrapping.JavaCodeGenerator
createIncludedProjectsList() - Method in class edu.stanford.smi.protege.model.KnowledgeBaseSourcesEditor
createInstance(String, Cls) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
createInstance(String, Collection) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
createInstance(String, Cls, boolean) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
createInstance(FrameID, Cls, boolean) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
createInstance(FrameID, Collection, boolean) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
createInstance(String, Cls) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
createInstance(String, Collection) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
createInstance(String, Cls, boolean) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
createInstance(FrameID, Cls, boolean) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
createInstance(FrameID, Collection, boolean) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
createInstance() - Static method in class edu.stanford.smi.protege.ui.FrameRenderer
createInstance() - Static method in class edu.stanford.smi.protege.ui.SlotPairRenderer
createInstanceDisplay(Project, boolean, boolean) - Method in class edu.stanford.smi.protege.model.Project
createInstanceDisplay() - Method in class edu.stanford.smi.protege.widget.InstancesTab
createInstanceLabeledComponent() - Method in class edu.stanford.smi.protege.ui.SelectInstancesPanel
createInstanceList() - Method in class edu.stanford.smi.protege.ui.SelectInstancesPanel
createInstancesField() - Method in class edu.stanford.smi.protege.storage.clips.FileSourcesPanel
createInterface(Cls) - Method in class edu.stanford.smi.protege.code.generator.wrapping.JavaCodeGenerator
createInterfaceSlotCode(PrintWriter, SlotAtClassCode) - Method in class edu.stanford.smi.protege.code.generator.wrapping.JavaCodeGenerator
createInverseRelationshipPanel() - Method in class edu.stanford.smi.protege.widget.ClsesTab
createKnowledgeBase(Collection) - Method in interface edu.stanford.smi.protege.model.KnowledgeBaseFactory
createKnowledgeBase(Collection) - Method in class edu.stanford.smi.protege.storage.clips.ClipsKnowledgeBaseFactory
createKnowledgeBase(Collection) - Method in class edu.stanford.smi.protege.storage.database.DatabaseKnowledgeBaseFactory
createKnowledgeBase(Collection) - Method in class edu.stanford.smi.protege.storage.xml.XMLKnowledgeBaseFactory
createKnowledgeBaseSourcesEditor(String, PropertyList) - Method in interface edu.stanford.smi.protege.model.KnowledgeBaseFactory
  Note that this method should really take a URI for a param rather than a string.
createKnowledgeBaseSourcesEditor(String, PropertyList) - Method in class edu.stanford.smi.protege.storage.clips.ClipsKnowledgeBaseFactory
createKnowledgeBaseSourcesEditor(String, PropertyList) - Method in class edu.stanford.smi.protege.storage.database.DatabaseKnowledgeBaseFactory
createKnowledgeBaseSourcesEditor(String, PropertyList) - Method in class edu.stanford.smi.protege.storage.xml.XMLKnowledgeBaseFactory
createLabel() - Static method in class edu.stanford.smi.protege.util.ComponentFactory
createLabel(String) - Static method in class edu.stanford.smi.protege.util.ComponentFactory
createLabel(Icon) - Static method in class edu.stanford.smi.protege.util.ComponentFactory
createLabel(Icon, int) - Static method in class edu.stanford.smi.protege.util.ComponentFactory
createLabel(String, int) - Static method in class edu.stanford.smi.protege.util.ComponentFactory
createLabel(String, Icon, int) - Static method in class edu.stanford.smi.protege.util.ComponentFactory
createLabeledScrollComponent(String, JComponent, Dimension) - Static method in class edu.stanford.smi.protege.util.ComponentFactory
createLabeledScrollComponent(String, JComponent, Dimension, JComponent, Collection, JComponent) - Static method in class edu.stanford.smi.protege.util.ComponentFactory
createLeftRightSplitPane() - Static method in class edu.stanford.smi.protege.util.ComponentFactory
createLeftRightSplitPane(boolean) - Static method in class edu.stanford.smi.protege.util.ComponentFactory
createLeftRightSplitPane(Component, Component) - Static method in class edu.stanford.smi.protege.util.ComponentFactory
createLeftRightSplitPane(Component, Component, boolean) - Static method in class edu.stanford.smi.protege.util.ComponentFactory
createLeftRightSplitPane(String, int) - Method in class edu.stanford.smi.protege.widget.AbstractTabWidget
createList(X) - Static method in class edu.stanford.smi.protege.util.CollectionUtilities
createList(Action) - Static method in class edu.stanford.smi.protege.util.ComponentFactory
createList(Action, boolean) - Static method in class edu.stanford.smi.protege.util.ComponentFactory
createList() - Method in class edu.stanford.smi.protege.widget.ClsFieldWidget
createList() - Method in class edu.stanford.smi.protege.widget.InstanceFieldWidget
createListFinder() - Method in class edu.stanford.smi.protege.ui.SelectInstancesPanel
createMainComponent(Action) - Method in class edu.stanford.smi.protege.widget.AbstractTableWidget
createMainFrame() - Static method in class edu.stanford.smi.protege.util.ComponentFactory
createMainSplitter() - Method in class edu.stanford.smi.protege.widget.ClsesTab
createMenu() - Static method in class edu.stanford.smi.protege.util.ComponentFactory
createMenu(String) - Static method in class edu.stanford.smi.protege.util.ComponentFactory
createMenu(ResourceKey) - Static method in class edu.stanford.smi.protege.util.ComponentFactory
createMenu(String, int) - Static method in class edu.stanford.smi.protege.util.ComponentFactory
createMenuItem(String) - Static method in class edu.stanford.smi.protege.util.ComponentFactory
createModel() - Method in class edu.stanford.smi.protege.widget.ComboBoxWidget
createModel() - Method in class edu.stanford.smi.protege.widget.ValueTypeWidget
createNarrowFrameStore(String) - Method in class edu.stanford.smi.protege.model.AbstractKnowledgeBaseFactory
createNarrowFrameStore(String) - Method in interface edu.stanford.smi.protege.model.KnowledgeBaseFactory2
createNarrowFrameStore(String) - Method in class edu.stanford.smi.protege.storage.database.DatabaseKnowledgeBaseFactory
createNewProject(KnowledgeBaseFactory, Collection) - Static method in class edu.stanford.smi.protege.model.Project
createNewProject(KnowledgeBaseFactory) - Method in class edu.stanford.smi.protege.plugin.AbstractCreateProjectPlugin
createNewProject(KnowledgeBaseFactory) - Method in class edu.stanford.smi.protege.storage.database.DatabaseCreateProjectPlugin
createNewProjectRequest() - Method in class edu.stanford.smi.protege.ui.ProjectManager
createNode(Object) - Method in class edu.stanford.smi.protege.ui.ClsClsReferenceNode
createNode(Object) - Method in class edu.stanford.smi.protege.ui.ClsClsReferenceRoot
createNode(Object) - Method in class edu.stanford.smi.protege.ui.FormParentChildNode
createNode(Object) - Method in class edu.stanford.smi.protege.ui.FormParentChildRoot
createNode(Object) - Method in class edu.stanford.smi.protege.ui.ParentChildNode
createNode(Object) - Method in class edu.stanford.smi.protege.ui.ParentChildRoot
createNode(Object) - Method in class edu.stanford.smi.protege.ui.ReferenceNode
createNode(Object) - Method in class edu.stanford.smi.protege.ui.ReferenceRoot
createNode(Object) - Method in class edu.stanford.smi.protege.ui.SlotSubslotNode
createNode(Object) - Method in class edu.stanford.smi.protege.ui.SlotSubslotRoot
createNode(Object) - Method in class edu.stanford.smi.protege.util.LazyTreeNode
createObject(KnowledgeBase, String, String, Class<? extends X>) - Static method in class edu.stanford.smi.protege.code.generator.wrapping.OntologyJavaMappingUtil
createObjectAs(KnowledgeBase, String, Class<? extends X>) - Static method in class edu.stanford.smi.protege.code.generator.wrapping.OntologyJavaMappingUtil
  Creates object as the java interface passed as argument.
createOperation(String) - Method in class edu.stanford.smi.protege.server.metaproject.impl.MetaProjectImpl
createOperation(String) - Method in interface edu.stanford.smi.protege.server.metaproject.MetaProject
createPanel() - Static method in class edu.stanford.smi.protege.util.ComponentFactory
createPanes() - Method in class edu.stanford.smi.protege.ui.ClsesPanel
createPasswordField() - Static method in class edu.stanford.smi.protege.util.ComponentFactory
createPopupMenu() - Method in class edu.stanford.smi.protege.ui.SubclassPane
createPrintWriter(File, boolean) - Static method in class edu.stanford.smi.protege.util.FileUtilities
CreateProject - Class in edu.stanford.smi.protege.action
  Create a new project.
CreateProject(boolean) - Constructor for class edu.stanford.smi.protege.action.CreateProject
createProject() - Method in class edu.stanford.smi.protege.plugin.AbstractCreateProjectPlugin
createProject(File, Collection) - Method in interface edu.stanford.smi.protege.plugin.CreateProjectFromFilePlugin
createProject() - Method in interface edu.stanford.smi.protege.plugin.CreateProjectPlugin
createProject(String) - Method in class edu.stanford.smi.protege.server.metaproject.impl.MetaProjectImpl
createProject(String) - Method in interface edu.stanford.smi.protege.server.metaproject.MetaProject
createProject(RemoteServer, RemoteServerProject, RemoteSession, boolean) - Static method in class edu.stanford.smi.protege.server.RemoteClientProject
createProject(String, RemoteSession, KnowledgeBaseFactory, boolean) - Method in interface edu.stanford.smi.protege.server.RemoteServer
createProject(String, RemoteSession, KnowledgeBaseFactory, boolean) - Method in class edu.stanford.smi.protege.server.Server
CreateProjectFromFilePlugin - Interface in edu.stanford.smi.protege.plugin
  A plugin that can be used to open files with a certain extension directly.
createProjectListener() - Method in class edu.stanford.smi.protege.ui.ProjectView
createProjectPathField() - Method in class edu.stanford.smi.protege.model.KnowledgeBaseSourcesEditor
CreateProjectPlugin - Interface in edu.stanford.smi.protege.plugin
  A plugin that controls the creation and configuration of a Project and the possible import of existing sources files into the new project.
CreateProjectWizard - Class in edu.stanford.smi.protege.plugin
  TODO Class Comment
CreateProjectWizard(JComponent) - Constructor for class edu.stanford.smi.protege.plugin.CreateProjectWizard
createPropertyValue() - Method in class edu.stanford.smi.protege.server.metaproject.impl.MetaProjectImpl
createPropertyValue(String, String) - Method in class edu.stanford.smi.protege.server.metaproject.impl.MetaProjectImpl
createPropertyValue() - Method in interface edu.stanford.smi.protege.server.metaproject.MetaProject
createPropertyValue(String, String) - Method in interface edu.stanford.smi.protege.server.metaproject.MetaProject
createRadioButton(String) - Static method in class edu.stanford.smi.protege.util.ComponentFactory
createRadioButton(Action) - Static method in class edu.stanford.smi.protege.util.ComponentFactory
createRadioButtonMenuItem(Action) - Static method in class edu.stanford.smi.protege.util.ComponentFactory
createReader(KnowledgeBase, String, Collection) - Method in class edu.stanford.smi.protege.model.AbstractKnowledgeBaseFactory
createReferencersAction() - Method in class edu.stanford.smi.protege.ui.DirectInstancesList
createRelationshipPane(Action) - Method in class edu.stanford.smi.protege.ui.ClsesPanel
createRemoteProjectShutdownListener() - Method in class edu.stanford.smi.protege.ui.ProjectView
createRemoveInstanceAction() - Method in class edu.stanford.smi.protege.ui.InstanceField
createRenderer() - Method in class edu.stanford.smi.protege.widget.AbstractListWidget
createRoot() - Method in class edu.stanford.smi.protege.ui.FormsPanel
createRoot(KnowledgeBase) - Method in class edu.stanford.smi.protege.ui.SubslotPane
createRoot() - Method in class edu.stanford.smi.protege.widget.AbstractTreeWidget
createRuntimeClsWidget(Instance) - Method in class edu.stanford.smi.protege.model.Project
createRuntimeClsWidget(Instance, Cls) - Method in class edu.stanford.smi.protege.model.Project
createRuntimeClsWidget(Cls, Instance, Cls) - Method in class edu.stanford.smi.protege.model.Project
createRuntimeException(SQLException) - Method in class edu.stanford.smi.protege.storage.database.AbstractDatabaseFrameDb
createRuntimeWidget(Instance) - Method in class edu.stanford.smi.protege.model.Project
  Deprecated. use createRuntimeClsWidget
createSaveFileChooser(String, String, String, boolean) - Static method in class edu.stanford.smi.protege.util.ComponentFactory
createScrollPane() - Static method in class edu.stanford.smi.protege.util.ComponentFactory
createScrollPane(JComponent) - Static method in class edu.stanford.smi.protege.util.ComponentFactory
createScrollPane(JTable) - Static method in class edu.stanford.smi.protege.util.ComponentFactory
createSelectableList(Action) - Static method in class edu.stanford.smi.protege.util.ComponentFactory
createSelectableList(Action, boolean) - Static method in class edu.stanford.smi.protege.util.ComponentFactory
createSelectableTable(Action) - Static method in class edu.stanford.smi.protege.util.ComponentFactory
createSelectableTree(Action, Cls) - Method in class edu.stanford.smi.protege.ui.SubclassPane
createSelectableTree(Action) - Static method in class edu.stanford.smi.protege.util.ComponentFactory
createSelectableTree(Action, LazyTreeRoot) - Static method in class edu.stanford.smi.protege.util.ComponentFactory
createSelectInstanceAction() - Method in class edu.stanford.smi.protege.ui.InstanceField
createServer(String) - Method in class edu.stanford.smi.protege.server.metaproject.impl.MetaProjectImpl
createServer(String) - Method in interface edu.stanford.smi.protege.server.metaproject.MetaProject
createServerSocket(int) - Method in class edu.stanford.smi.protege.server.socket.RmiSocketFactory
createServerSocket(int) - Method in class edu.stanford.smi.protege.server.socket.SSLFactory
createSetDisplaySlotAction() - Method in class edu.stanford.smi.protege.ui.DirectInstancesList
createSetDisplaySlotAction(Slot) - Method in class edu.stanford.smi.protege.ui.DirectInstancesList
createSetDisplaySlotMultipleAction() - Method in class edu.stanford.smi.protege.ui.DirectInstancesList
createShowAllInstancesAction() - Method in class edu.stanford.smi.protege.ui.DirectInstancesList
createShowAllRelationsAction() - Method in class edu.stanford.smi.protege.ui.ClsesPanel
createShowRelationAction(Slot) - Method in class edu.stanford.smi.protege.ui.ClsesPanel
createShowSubclassesAction() - Method in class edu.stanford.smi.protege.ui.ClsesPanel
createSimpleInstance(String, Cls, boolean) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
createSimpleInstance(FrameID, Collection, boolean) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
createSimpleInstance(FrameID, Cls, boolean) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
createSimpleInstance(FrameID, Collection) - Method in interface edu.stanford.smi.protege.model.FrameFactory
createSimpleInstance(FrameID, Collection, boolean) - Method in class edu.stanford.smi.protege.model.framestore.ArgumentCheckingFrameStore
createSimpleInstance(FrameID, Collection, boolean) - Method in class edu.stanford.smi.protege.model.framestore.ChangeMonitorFrameStore
createSimpleInstance(FrameID, Collection) - Method in class edu.stanford.smi.protege.model.framestore.DefaultFrameFactory
createSimpleInstance(FrameID, Class) - Method in class edu.stanford.smi.protege.model.framestore.DefaultFrameFactory
createSimpleInstance(FrameID, Collection, boolean) - Method in class edu.stanford.smi.protege.model.framestore.EventDispatchFrameStore
createSimpleInstance(FrameID, Collection, boolean) - Method in class edu.stanford.smi.protege.model.framestore.EventGeneratorFrameStore
createSimpleInstance(FrameID, Collection, boolean) - Method in class edu.stanford.smi.protege.model.framestore.FacetCheckingFrameStore
createSimpleInstance(FrameID, Collection, boolean) - Method in interface edu.stanford.smi.protege.model.framestore.FrameStore
createSimpleInstance(FrameID, Collection, boolean) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreAdapter
createSimpleInstance(FrameID, Collection, boolean) - Method in class edu.stanford.smi.protege.model.framestore.ImmutableNamesFrameStore
createSimpleInstance(FrameID, Collection, boolean) - Method in class edu.stanford.smi.protege.model.framestore.ModificationRecordFrameStore
createSimpleInstance(FrameID, Collection, boolean) - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
createSimpleInstance(FrameID, Collection) - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
createSimpleInstance(FrameID, Collection, boolean) - Method in class edu.stanford.smi.protege.model.framestore.TemplateFrameStore
createSimpleInstance(FrameID, Collection, boolean) - Method in class edu.stanford.smi.protege.model.framestore.undo.UndoFrameStore
createSimpleInstance(FrameID, Collection, boolean) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
createSimpleInstance(FrameID, Collection, boolean) - Method in class edu.stanford.smi.protege.server.framestore.FrameCalculatorFrameStore
createSimpleInstance(FrameID, Collection, boolean) - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
createSimpleInstance(FrameID, Collection, boolean, RemoteSession) - Method in interface edu.stanford.smi.protege.server.framestore.RemoteServerFrameStore
createSimpleInstance(FrameID, Collection, boolean, RemoteSession) - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
createSingleFormWidgetLayout(Collection) - Method in class edu.stanford.smi.protege.ui.InstanceDisplay
createSingleItemList(Action) - Static method in class edu.stanford.smi.protege.util.ComponentFactory
createSlot(String, Cls, Collection, boolean) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
createSlot(FrameID, Collection, Collection, boolean) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
createSlot(String) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
createSlot(String, Cls) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
createSlot(String, Cls, boolean) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
createSlot(FrameID, Collection) - Method in interface edu.stanford.smi.protege.model.FrameFactory
createSlot(FrameID, Collection, Collection, boolean) - Method in class edu.stanford.smi.protege.model.framestore.ArgumentCheckingFrameStore
createSlot(FrameID, Collection, Collection, boolean) - Method in class edu.stanford.smi.protege.model.framestore.ChangeMonitorFrameStore
createSlot(FrameID, Collection) - Method in class edu.stanford.smi.protege.model.framestore.DefaultFrameFactory
createSlot(FrameID, Class) - Method in class edu.stanford.smi.protege.model.framestore.DefaultFrameFactory
createSlot(FrameID, Collection, Collection, boolean) - Method in class edu.stanford.smi.protege.model.framestore.EventDispatchFrameStore
createSlot(FrameID, Collection, Collection, boolean) - Method in class edu.stanford.smi.protege.model.framestore.EventGeneratorFrameStore
createSlot(FrameID, Collection, Collection, boolean) - Method in class edu.stanford.smi.protege.model.framestore.FacetCheckingFrameStore
createSlot(FrameID, Collection, Collection, boolean) - Method in interface edu.stanford.smi.protege.model.framestore.FrameStore
createSlot(FrameID, Collection, Collection, boolean) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreAdapter
createSlot(FrameID, Collection, Collection, boolean) - Method in class edu.stanford.smi.protege.model.framestore.ImmutableNamesFrameStore
createSlot(FrameID, Collection, Collection, boolean) - Method in class edu.stanford.smi.protege.model.framestore.ModificationRecordFrameStore
createSlot(FrameID, Collection, Collection, boolean) - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
createSlot(FrameID, Collection) - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
createSlot(FrameID, Collection, Collection, boolean) - Method in class edu.stanford.smi.protege.model.framestore.TemplateFrameStore
createSlot(FrameID, Collection, Collection, boolean) - Method in class edu.stanford.smi.protege.model.framestore.undo.UndoFrameStore
createSlot(String) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
createSlot(String, Cls) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
createSlot(String, Cls, boolean) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
createSlot(String, Cls, Collection, boolean) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
createSlot(FrameID, Collection, Collection, boolean) - Method in class edu.stanford.smi.protege.server.framestore.FrameCalculatorFrameStore
createSlot(FrameID, Collection, Collection, boolean) - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
createSlot(FrameID, Collection, Collection, boolean, RemoteSession) - Method in interface edu.stanford.smi.protege.server.framestore.RemoteServerFrameStore
createSlot(FrameID, Collection, Collection, boolean, RemoteSession) - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
createSlotDisplay() - Method in class edu.stanford.smi.protege.widget.SlotsTab
createSlotWidget(WidgetDescriptor, boolean, Project, Cls, Slot) - Static method in class edu.stanford.smi.protege.widget.WidgetUtilities
createSmallFontLabel(String) - Static method in class edu.stanford.smi.protege.util.ComponentFactory
createSmallMap() - Static method in class edu.stanford.smi.protege.util.CollectionUtilities
createSocket(String, int) - Method in class edu.stanford.smi.protege.server.socket.RmiSocketFactory
createSocket(String, int) - Method in class edu.stanford.smi.protege.server.socket.SSLFactory
createStandardBorder() - Static method in class edu.stanford.smi.protege.util.ComponentFactory
createSubclassPane(Action, Cls, Action, Action) - Method in class edu.stanford.smi.protege.ui.ClsesPanel
createSystemFrames() - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
createTabbedPane(boolean) - Static method in class edu.stanford.smi.protege.util.ComponentFactory
createTabbedWidgetLayout(Collection) - Method in class edu.stanford.smi.protege.ui.InstanceDisplay
createTable() - Method in class edu.stanford.smi.protege.storage.database.DefaultDatabaseFrameDb
createTable(Action) - Static method in class edu.stanford.smi.protege.util.ComponentFactory
createTable(Action) - Method in class edu.stanford.smi.protege.widget.AbstractTableWidget
createTableModel() - Method in class edu.stanford.smi.protege.widget.AbstractTableWidget
createTableModel() - Method in class edu.stanford.smi.protege.widget.TemplateSlotsWidget
createTabWidget(WidgetDescriptor, Project) - Static method in class edu.stanford.smi.protege.widget.WidgetUtilities
createTempFile(KnowledgeBase, String) - Method in class edu.stanford.smi.protege.model.AbstractKnowledgeBaseFactory
createTempFile(File) - Static method in class edu.stanford.smi.protege.util.FileUtilities
createTextArea() - Static method in class edu.stanford.smi.protege.util.ComponentFactory
createTextArea() - Method in class edu.stanford.smi.protege.widget.TextAreaWidget
createTextComponent() - Method in class edu.stanford.smi.protege.widget.ImageWidget
createTextComponent() - Method in class edu.stanford.smi.protege.widget.TextAreaWidget
createTextComponent() - Method in class edu.stanford.smi.protege.widget.TextComponentWidget
createTextComponent() - Method in class edu.stanford.smi.protege.widget.TextFieldWidget
createTextComponent() - Method in class edu.stanford.smi.protege.widget.URLWidget
createTextField(String) - Static method in class edu.stanford.smi.protege.util.ComponentFactory
createTextField() - Static method in class edu.stanford.smi.protege.util.ComponentFactory
createTextField() - Method in class edu.stanford.smi.protege.widget.PasswordFieldWidget
createTextField() - Method in class edu.stanford.smi.protege.widget.TextFieldWidget
createTextPane() - Static method in class edu.stanford.smi.protege.util.ComponentFactory
createThinStandardBorder() - Static method in class edu.stanford.smi.protege.util.ComponentFactory
createTitleFontLabel(String) - Static method in class edu.stanford.smi.protege.util.ComponentFactory
createToggleButton(Action) - Static method in class edu.stanford.smi.protege.util.ComponentFactory
createToolBar() - Static method in class edu.stanford.smi.protege.util.ComponentFactory
createTopBottomSplitPane(boolean) - Static method in class edu.stanford.smi.protege.util.ComponentFactory
createTopBottomSplitPane() - Static method in class edu.stanford.smi.protege.util.ComponentFactory
createTopBottomSplitPane(Component, Component) - Static method in class edu.stanford.smi.protege.util.ComponentFactory
createTopBottomSplitPane(Component, Component, boolean) - Static method in class edu.stanford.smi.protege.util.ComponentFactory
createTopBottomSplitPane(String, int) - Method in class edu.stanford.smi.protege.widget.AbstractTabWidget
createTree(Action) - Static method in class edu.stanford.smi.protege.util.ComponentFactory
createUniqueFrameName(String) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
  Deprecated. no longer needed
createUniqueFrameName(String) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
  Deprecated. pass "null" in as a frame name to a create method to get a gensym name
createURI(String) - Static method in class edu.stanford.smi.protege.util.URIUtilities
createUser(String, String) - Method in class edu.stanford.smi.protege.server.metaproject.impl.MetaProjectImpl
createUser(String, String) - Method in interface edu.stanford.smi.protege.server.metaproject.MetaProject
createUser(String, String) - Method in interface edu.stanford.smi.protege.server.RemoteServer
createUser(String, String) - Method in class edu.stanford.smi.protege.server.Server
createValueMap(KnowledgeBase, KnowledgeBase) - Static method in class edu.stanford.smi.protege.model.ModelUtilities
createValuesComponent(ValueType) - Method in class edu.stanford.smi.protege.widget.ValueTypeWidget
createViewAction() - Method in class edu.stanford.smi.protege.ui.DirectInstancesList
createViewAction() - Method in class edu.stanford.smi.protege.widget.URLWidget
createViewInstanceAction() - Method in class edu.stanford.smi.protege.ui.InstanceField
createWidgetConfigurationPanel() - Method in class edu.stanford.smi.protege.widget.AbstractListWidget
createWidgetConfigurationPanel() - Method in class edu.stanford.smi.protege.widget.AbstractSlotWidget
createWidgetConfigurationPanel() - Method in class edu.stanford.smi.protege.widget.CheckBoxWidget
createWidgetConfigurationPanel() - Method in class edu.stanford.smi.protege.widget.ClsFieldWidget
createWidgetConfigurationPanel() - Method in class edu.stanford.smi.protege.widget.ComboBoxWidget
createWidgetConfigurationPanel() - Method in class edu.stanford.smi.protege.widget.InstanceFieldWidget
createWidgetConfigurationPanel() - Method in class edu.stanford.smi.protege.widget.TextComponentWidget
createWidgetContainer(Collection) - Method in class edu.stanford.smi.protege.ui.InstanceDisplay
createWidgetDescriptor() - Method in class edu.stanford.smi.protege.model.Project
createWidgetDescriptor(Cls, Slot, Facet) - Method in class edu.stanford.smi.protege.model.Project
createWidgetDescriptor(String) - Method in class edu.stanford.smi.protege.util.PropertyList
createWidgetDescriptor(Cls, Slot, Facet) - Method in class edu.stanford.smi.protege.widget.DefaultWidgetMapper
createWidgetDescriptor(Slot) - Method in class edu.stanford.smi.protege.widget.FormWidget
createWidgetDescriptor(Cls, Slot, Facet) - Method in interface edu.stanford.smi.protege.widget.WidgetMapper
createWidgets(KnowledgeBase, Collection) - Method in class edu.stanford.smi.protege.ui.SelectInstancesPanel
createWidgets() - Method in class edu.stanford.smi.protege.widget.FormWidget
createWindow() - Static method in class edu.stanford.smi.protege.util.ComponentFactory
createWriter(File) - Method in class edu.stanford.smi.protege.model.AbstractKnowledgeBaseFactory
CREATION_TIMESTAMP - Static variable in interface edu.stanford.smi.protege.model.Model.Slot
CREATION_TIMESTAMP - Static variable in interface edu.stanford.smi.protege.model.Model.SlotID
CREATOR - Static variable in interface edu.stanford.smi.protege.model.Model.Slot
CREATOR - Static variable in interface edu.stanford.smi.protege.model.Model.SlotID
curChar - Variable in class edu.stanford.smi.protege.storage.clips.ParserTokenManager
CURRENT_WORKING_DIRECTORY - Static variable in class edu.stanford.smi.protege.util.ApplicationProperties
currentToken - Variable in exception edu.stanford.smi.protege.storage.clips.ParseException
  This is the last token that has been consumed successfully.
Cut - Class in edu.stanford.smi.protege.action
  TODO Class Comment
Cut(boolean) - Constructor for class edu.stanford.smi.protege.action.Cut
CUT_ACTION - Static variable in class edu.stanford.smi.protege.resource.ResourceKey

## D

DATABASE_CONFIGURATION_DIALOG_TITLE - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
DATABASE_CONFIGURE_FAILED_DIALOG_CANNOT_CREATE_CONNECTION_TEXT - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
DATABASE_CONFIGURE_FAILED_DIALOG_DRIVER_NOT_FOUND_TEXT - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
DatabaseCreateProjectPlugin - Class in edu.stanford.smi.protege.storage.database
  TODO Class Comment
DatabaseCreateProjectPlugin() - Constructor for class edu.stanford.smi.protege.storage.database.DatabaseCreateProjectPlugin
DatabaseFrameDb - Interface in edu.stanford.smi.protege.storage.database
DatabaseFrameDbFactory - Class in edu.stanford.smi.protege.storage.database
  Title: DatabaseFrameDbFactory
DatabaseFrameDbFactory() - Constructor for class edu.stanford.smi.protege.storage.database.DatabaseFrameDbFactory
DatabaseKnowledgeBaseFactory - Class in edu.stanford.smi.protege.storage.database
  Description of the class
DatabaseKnowledgeBaseFactory() - Constructor for class edu.stanford.smi.protege.storage.database.DatabaseKnowledgeBaseFactory
DatabaseKnowledgeBaseSourcesEditor - Class in edu.stanford.smi.protege.storage.database
  Description of the class
DatabaseKnowledgeBaseSourcesEditor(String, PropertyList) - Constructor for class edu.stanford.smi.protege.storage.database.DatabaseKnowledgeBaseSourcesEditor
DatabaseParam - Class in edu.stanford.smi.protege.storage.database.pool
DatabaseParam(String, String, String, String) - Constructor for class edu.stanford.smi.protege.storage.database.pool.DatabaseParam
DatabasePlugin - Interface in edu.stanford.smi.protege.storage.database
  TODO Class Comment
DatabaseProperty - Enum in edu.stanford.smi.protege.storage.database
DatabaseUtils - Class in edu.stanford.smi.protege.storage.database
DatabaseUtils() - Constructor for class edu.stanford.smi.protege.storage.database.DatabaseUtils
DatabaseWizardPage - Class in edu.stanford.smi.protege.storage.database
  TODO Class Comment
DatabaseWizardPage(Wizard, DatabasePlugin) - Constructor for class edu.stanford.smi.protege.storage.database.DatabaseWizardPage
debugBreak() - Static method in class edu.stanford.smi.protege.util.SystemUtilities
debugOutOfMemory() - Method in class edu.stanford.smi.protege.storage.database.ValueCachingNarrowFrameStore
debugStream - Variable in class edu.stanford.smi.protege.storage.clips.ParserTokenManager
  Debug output.
DECREASE_FONT_SIZE - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
DecreaseFontSize - Class in edu.stanford.smi.protege.action
  Descrease the font used by most of the widgets by one increment.
DecreaseFontSize() - Constructor for class edu.stanford.smi.protege.action.DecreaseFontSize
deepCopy(KnowledgeBase, Map) - Method in class edu.stanford.smi.protege.model.DefaultInstance
deepCopy(KnowledgeBase, Map) - Method in class edu.stanford.smi.protege.model.DefaultSlot
deepCopy(KnowledgeBase, Map) - Method in interface edu.stanford.smi.protege.model.Frame
  Create a "deep copy" of the frame.
DEFAULT - Static variable in interface edu.stanford.smi.protege.storage.clips.ParserConstants
  Lexical state.
DEFAULT_ - Static variable in interface edu.stanford.smi.protege.storage.clips.ParserConstants
  RegularExpression Id.
DEFAULT_CACHE_MAP_SIZE - Static variable in class edu.stanford.smi.protege.util.CacheMap
  Deprecated.
DEFAULT_CACHE_MAP_SIZE_PROPERTY - Static variable in class edu.stanford.smi.protege.util.CacheMap
  Deprecated.
DEFAULT_CLS_JAVA_CLASS_ID - Static variable in class edu.stanford.smi.protege.model.framestore.DefaultFrameFactory
DEFAULT_CLS_METACLASS_CHANGED - Static variable in class edu.stanford.smi.protege.event.KnowledgeBaseEvent
DEFAULT_FACET_JAVA_CLASS_ID - Static variable in class edu.stanford.smi.protege.model.framestore.DefaultFrameFactory
DEFAULT_FACET_METACLASS_CHANGED - Static variable in class edu.stanford.smi.protege.event.KnowledgeBaseEvent
DEFAULT_FONT - Static variable in class edu.stanford.smi.protege.util.ProtegePlasticTheme
DEFAULT_FONT_SIZE - Static variable in class edu.stanford.smi.protege.util.ProtegePlasticTheme
DEFAULT_KEYMANAGER_ALGORITHM - Static variable in class edu.stanford.smi.protege.server.socket.SSLFactory
DEFAULT_KEYSTORE_TYPE - Static variable in class edu.stanford.smi.protege.server.socket.SSLFactory
DEFAULT_MAX_STRING_SIZE - Static variable in class edu.stanford.smi.protege.storage.database.RobustConnection
DEFAULT_SIMPLE_INSTANCE_JAVA_CLASS_ID - Static variable in class edu.stanford.smi.protege.model.framestore.DefaultFrameFactory
DEFAULT_SLOT_JAVA_CLASS_ID - Static variable in class edu.stanford.smi.protege.model.framestore.DefaultFrameFactory
DEFAULT_SLOT_METACLASS_CHANGED - Static variable in class edu.stanford.smi.protege.event.KnowledgeBaseEvent
DEFAULT_SLOT_VALUES_DELIMITER - Static variable in class edu.stanford.smi.protege.action.ExportToCsvUtil
DEFAULT_SLOT_WIDGET_LABEL - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
DEFAULT_SLOTS_DELIMITER - Static variable in class edu.stanford.smi.protege.action.ExportToCsvUtil
DEFAULT_SSL_PROTOCOL - Static variable in class edu.stanford.smi.protege.server.socket.SSLFactory
DEFAULT_TABLE_NAME - Static variable in class edu.stanford.smi.protege.storage.database.DatabaseKnowledgeBaseSourcesEditor
DefaultCls - Class in edu.stanford.smi.protege.model
  Default implementation of Cls interface.
DefaultCls() - Constructor for class edu.stanford.smi.protege.model.DefaultCls
DefaultCls(KnowledgeBase, FrameID) - Constructor for class edu.stanford.smi.protege.model.DefaultCls
defaultClsMetaClsChanged(KnowledgeBaseEvent) - Method in class edu.stanford.smi.protege.event.KnowledgeBaseAdapter
defaultClsMetaClsChanged(KnowledgeBaseEvent) - Method in interface edu.stanford.smi.protege.event.KnowledgeBaseListener
DefaultDatabaseFrameDb - Class in edu.stanford.smi.protege.storage.database
DefaultDatabaseFrameDb() - Constructor for class edu.stanford.smi.protege.storage.database.DefaultDatabaseFrameDb
DefaultErrorHandler<X extends Throwable> - Class in edu.stanford.smi.protege.util
  Default implementation of the `ErrorHandler` interface.
DefaultErrorHandler() - Constructor for class edu.stanford.smi.protege.util.DefaultErrorHandler
DefaultFacet - Class in edu.stanford.smi.protege.model
  Default implementation of Facet interface.
DefaultFacet(KnowledgeBase, FrameID) - Constructor for class edu.stanford.smi.protege.model.DefaultFacet
DefaultFacet() - Constructor for class edu.stanford.smi.protege.model.DefaultFacet
defaultFacet(Cls, Slot) - Method in class edu.stanford.smi.protege.storage.clips.Parser
defaultFacetMetaClsChanged(KnowledgeBaseEvent) - Method in class edu.stanford.smi.protege.event.KnowledgeBaseAdapter
defaultFacetMetaClsChanged(KnowledgeBaseEvent) - Method in interface edu.stanford.smi.protege.event.KnowledgeBaseListener
DefaultFrame - Class in edu.stanford.smi.protege.model
  Default implementation of Frame interface.
DefaultFrame() - Constructor for class edu.stanford.smi.protege.model.DefaultFrame
DefaultFrameFactory - Class in edu.stanford.smi.protege.model.framestore
DefaultFrameFactory(KnowledgeBase) - Constructor for class edu.stanford.smi.protege.model.framestore.DefaultFrameFactory
DefaultInstance - Class in edu.stanford.smi.protege.model
  Default implementation of Instance interface.
DefaultInstance() - Constructor for class edu.stanford.smi.protege.model.DefaultInstance
DefaultKnowledgeBase - Class in edu.stanford.smi.protege.model
  Default implementation of the KnowledgeBase interface.
DefaultKnowledgeBase(KnowledgeBaseFactory) - Constructor for class edu.stanford.smi.protege.model.DefaultKnowledgeBase
DefaultKnowledgeBase() - Constructor for class edu.stanford.smi.protege.model.DefaultKnowledgeBase
DefaultLogger - Class in edu.stanford.smi.protege.util
  Default Logger implementation.
DefaultLogger() - Constructor for class edu.stanford.smi.protege.util.DefaultLogger
DefaultLogger(Writer) - Constructor for class edu.stanford.smi.protege.util.DefaultLogger
DefaultRenderer - Class in edu.stanford.smi.protege.util
  Default implementation of the various renderer interfaces.
DefaultRenderer() - Constructor for class edu.stanford.smi.protege.util.DefaultRenderer
DEFAULTS - Static variable in interface edu.stanford.smi.protege.model.Model.Facet
DEFAULTS - Static variable in interface edu.stanford.smi.protege.model.Model.FacetID
DEFAULTS - Static variable in interface edu.stanford.smi.protege.model.Model.Slot
DEFAULTS - Static variable in interface edu.stanford.smi.protege.model.Model.SlotID
DefaultSimpleInstance - Class in edu.stanford.smi.protege.model
  This is the concrete subclass of DefaultInstance which handles everything but classes, slots, and facets.
DefaultSimpleInstance() - Constructor for class edu.stanford.smi.protege.model.DefaultSimpleInstance
DefaultSimpleInstance(KnowledgeBase, FrameID) - Constructor for class edu.stanford.smi.protege.model.DefaultSimpleInstance
  This constructor should be used by classes which use the "java_packages" feature of protege to load instances of user defined classes.
DefaultSimpleInstance(KnowledgeBase, String, Cls) - Constructor for class edu.stanford.smi.protege.model.DefaultSimpleInstance
  This constructor may be called by applications that need to construct instances by calling a constructor directly rather than by calling KnowledgeBase.createInstance (for example, JESS).
DefaultSlot - Class in edu.stanford.smi.protege.model
  Default implementation of Slot interface.
DefaultSlot(KnowledgeBase, FrameID) - Constructor for class edu.stanford.smi.protege.model.DefaultSlot
DefaultSlot() - Constructor for class edu.stanford.smi.protege.model.DefaultSlot
defaultSlotMetaClsChanged(KnowledgeBaseEvent) - Method in class edu.stanford.smi.protege.event.KnowledgeBaseAdapter
defaultSlotMetaClsChanged(KnowledgeBaseEvent) - Method in interface edu.stanford.smi.protege.event.KnowledgeBaseListener
DefaultValueRenderer - Class in edu.stanford.smi.protege.ui
  Render the slot default value facet.
DefaultValueRenderer() - Constructor for class edu.stanford.smi.protege.ui.DefaultValueRenderer
DefaultValuesConstraint - Class in edu.stanford.smi.protege.model
DefaultValuesConstraint() - Constructor for class edu.stanford.smi.protege.model.DefaultValuesConstraint
DefaultValuesWidget - Class in edu.stanford.smi.protege.widget
  Widget for acquiring default values.
DefaultValuesWidget() - Constructor for class edu.stanford.smi.protege.widget.DefaultValuesWidget
DefaultWidgetLayoutStrategy - Class in edu.stanford.smi.protege.widget
  This class determines the default layout of a form.
DefaultWidgetLayoutStrategy() - Constructor for class edu.stanford.smi.protege.widget.DefaultWidgetLayoutStrategy
DefaultWidgetMapper - Class in edu.stanford.smi.protege.widget
  Determines the mapping between a slot and its default widget.
DefaultWidgetMapper(KnowledgeBase) - Constructor for class edu.stanford.smi.protege.widget.DefaultWidgetMapper
DEFCLASS - Static variable in interface edu.stanford.smi.protege.storage.clips.ParserConstants
  RegularExpression Id.
DeferredOperationCache - Class in edu.stanford.smi.protege.server.update
  Certain operations, most noteably begin/commit/rollback transaction apply to all the cache's in the RemoteClientFrameStore.
DeferredOperationCache(Cache<RemoteSession, Sft, List>, FifoReader<SerializedCacheUpdate<RemoteSession, Sft, List>>) - Constructor for class edu.stanford.smi.protege.server.update.DeferredOperationCache
DELAY_KBS_DOWNLOAD - Static variable in class edu.stanford.smi.protege.server.ServerProperties
DELAY_KBS_UPLOAD - Static variable in class edu.stanford.smi.protege.server.ServerProperties
DELAY_MSEC - Static variable in class edu.stanford.smi.protege.model.framestore.EventDispatchFrameStore
DELAY_MSEC - Static variable in class edu.stanford.smi.protege.server.ServerProperties
delayForLatency() - Static method in class edu.stanford.smi.protege.server.socket.SimulateDelayAspect
delayInMilliseconds() - Static method in class edu.stanford.smi.protege.server.ServerProperties
delete() - Method in class edu.stanford.smi.protege.code.generator.wrapping.AbstractWrappedInstance
delete() - Method in class edu.stanford.smi.protege.model.DefaultFrame
delete() - Method in interface edu.stanford.smi.protege.model.Frame
delete(Frame) - Method in interface edu.stanford.smi.protege.util.DeletionHook
DELETE_CLASS_FAILED_DIALOG_TEXT - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
DeleteAction - Class in edu.stanford.smi.protege.util
  Base class for the delete action that is available on most widgets.
DeleteAction(String, Selectable, Icon) - Constructor for class edu.stanford.smi.protege.util.DeleteAction
DeleteAction(String, Selectable) - Constructor for class edu.stanford.smi.protege.util.DeleteAction
DeleteAction(ResourceKey, Selectable) - Constructor for class edu.stanford.smi.protege.util.DeleteAction
deleteCls(Cls) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
deleteCls(Cls) - Method in class edu.stanford.smi.protege.model.framestore.ArgumentCheckingFrameStore
deleteCls(Cls) - Method in class edu.stanford.smi.protege.model.framestore.ChangeMonitorFrameStore
deleteCls(Cls) - Method in class edu.stanford.smi.protege.model.framestore.DeleteSimplificationFrameStore
deleteCls(Cls) - Method in class edu.stanford.smi.protege.model.framestore.DeletionHookFrameStore
deleteCls(Cls) - Method in class edu.stanford.smi.protege.model.framestore.EventDispatchFrameStore
deleteCls(Cls) - Method in class edu.stanford.smi.protege.model.framestore.EventGeneratorFrameStore
deleteCls(Cls) - Method in interface edu.stanford.smi.protege.model.framestore.FrameStore
  Delete a single leaf class.
deleteCls(Cls) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreAdapter
deleteCls(Cls) - Method in class edu.stanford.smi.protege.model.framestore.ModificationRecordFrameStore
deleteCls(Cls) - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
deleteCls(Cls) - Method in class edu.stanford.smi.protege.model.framestore.TemplateFrameStore
deleteCls(Cls) - Method in class edu.stanford.smi.protege.model.framestore.undo.UndoFrameStore
deleteCls(Cls) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
deleteCls(Cls) - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
deleteCls(Cls, RemoteSession) - Method in interface edu.stanford.smi.protege.server.framestore.RemoteServerFrameStore
deleteCls(Cls, RemoteSession) - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
DeleteClsAction - Class in edu.stanford.smi.protege.action
DeleteClsAction(Selectable) - Constructor for class edu.stanford.smi.protege.action.DeleteClsAction
DeleteClsCommand - Class in edu.stanford.smi.protege.model.framestore.undo
DeleteClsCommand(FrameStore, Cls) - Constructor for class edu.stanford.smi.protege.model.framestore.undo.DeleteClsCommand
deleted(FrameEvent) - Method in class edu.stanford.smi.protege.event.FrameAdapter
DELETED - Static variable in class edu.stanford.smi.protege.event.FrameEvent
deleted(FrameEvent) - Method in interface edu.stanford.smi.protege.event.FrameListener
DeletedFrameException - Exception in edu.stanford.smi.protege.model
  Exception thrown when the client calls a method on default knowledge base (directly or indirectly) and passes in a parameter which is or contains a frame that has been deleted.
DeletedFrameException(String) - Constructor for exception edu.stanford.smi.protege.model.DeletedFrameException
deleteDirectory(File) - Static method in class edu.stanford.smi.protege.util.FileUtilities
deleteFacet(Facet) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
deleteFacet(Facet) - Method in class edu.stanford.smi.protege.model.framestore.ArgumentCheckingFrameStore
deleteFacet(Facet) - Method in class edu.stanford.smi.protege.model.framestore.ChangeMonitorFrameStore
deleteFacet(Facet) - Method in class edu.stanford.smi.protege.model.framestore.DeleteSimplificationFrameStore
deleteFacet(Facet) - Method in class edu.stanford.smi.protege.model.framestore.DeletionHookFrameStore
deleteFacet(Facet) - Method in class edu.stanford.smi.protege.model.framestore.EventDispatchFrameStore
deleteFacet(Facet) - Method in class edu.stanford.smi.protege.model.framestore.EventGeneratorFrameStore
deleteFacet(Facet) - Method in interface edu.stanford.smi.protege.model.framestore.FrameStore
deleteFacet(Facet) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreAdapter
deleteFacet(Facet) - Method in class edu.stanford.smi.protege.model.framestore.ModificationRecordFrameStore
deleteFacet(Facet) - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
deleteFacet(Facet) - Method in class edu.stanford.smi.protege.model.framestore.TemplateFrameStore
deleteFacet(Facet) - Method in class edu.stanford.smi.protege.model.framestore.undo.UndoFrameStore
deleteFacet(Facet) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
deleteFacet(Facet) - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
deleteFacet(Facet, RemoteSession) - Method in interface edu.stanford.smi.protege.server.framestore.RemoteServerFrameStore
deleteFacet(Facet, RemoteSession) - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
deleteFrame(Frame) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
deleteFrame(Frame) - Method in class edu.stanford.smi.protege.model.framestore.ClosureCachingBasicFrameStore
deleteFrame(Frame) - Method in class edu.stanford.smi.protege.model.framestore.ImmutableNamesNarrowFrameStore
deleteFrame(Frame) - Method in class edu.stanford.smi.protege.model.framestore.InMemoryFrameDb
deleteFrame(Frame) - Method in class edu.stanford.smi.protege.model.framestore.MergingNarrowFrameStore
deleteFrame(Frame) - Method in interface edu.stanford.smi.protege.model.framestore.NarrowFrameStore
deleteFrame(Frame) - Method in class edu.stanford.smi.protege.model.framestore.PlaceHolderNarrowFrameStore
deleteFrame(Frame) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
deleteFrame(Frame, RemoteSession) - Method in interface edu.stanford.smi.protege.server.narrowframestore.RemoteServerNarrowFrameStore
deleteFrame(Frame, RemoteSession) - Method in class edu.stanford.smi.protege.server.narrowframestore.ServerNarrowFrameStore
deleteFrame(Frame) - Method in class edu.stanford.smi.protege.storage.database.DefaultDatabaseFrameDb
deleteFrame(Frame) - Method in class edu.stanford.smi.protege.storage.database.IdleConnectionNarrowFrameStore
deleteFrame(Frame) - Method in class edu.stanford.smi.protege.storage.database.ValueCachingNarrowFrameStore
DeleteFrameCommand - Class in edu.stanford.smi.protege.model.framestore.undo
DeleteFrameCommand(FrameStore, Frame) - Constructor for class edu.stanford.smi.protege.model.framestore.undo.DeleteFrameCommand
deleteInstance(Instance) - Method in class edu.stanford.smi.protege.action.DeleteInstancesAction
deleteInstance(Instance) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
deleteInstance(Instance) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
DeleteInstancesAction - Class in edu.stanford.smi.protege.action
  Action to attempt to delete an instance.
DeleteInstancesAction(Selectable) - Constructor for class edu.stanford.smi.protege.action.DeleteInstancesAction
DeleteInstancesAction(ResourceKey, Selectable) - Constructor for class edu.stanford.smi.protege.action.DeleteInstancesAction
DeleteInstancesAction(String, Selectable) - Constructor for class edu.stanford.smi.protege.action.DeleteInstancesAction
  Deprecated. Use ResourceKey version
deleteRow(int) - Method in class edu.stanford.smi.protege.widget.PropertiesTableModel
deleteSimpleInstance(SimpleInstance) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
deleteSimpleInstance(SimpleInstance) - Method in class edu.stanford.smi.protege.model.framestore.ArgumentCheckingFrameStore
deleteSimpleInstance(SimpleInstance) - Method in class edu.stanford.smi.protege.model.framestore.ChangeMonitorFrameStore
deleteSimpleInstance(SimpleInstance) - Method in class edu.stanford.smi.protege.model.framestore.DeleteSimplificationFrameStore
deleteSimpleInstance(SimpleInstance) - Method in class edu.stanford.smi.protege.model.framestore.DeletionHookFrameStore
deleteSimpleInstance(SimpleInstance) - Method in class edu.stanford.smi.protege.model.framestore.EventDispatchFrameStore
deleteSimpleInstance(SimpleInstance) - Method in class edu.stanford.smi.protege.model.framestore.EventGeneratorFrameStore
deleteSimpleInstance(SimpleInstance) - Method in interface edu.stanford.smi.protege.model.framestore.FrameStore
deleteSimpleInstance(SimpleInstance) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreAdapter
deleteSimpleInstance(SimpleInstance) - Method in class edu.stanford.smi.protege.model.framestore.ModificationRecordFrameStore
deleteSimpleInstance(SimpleInstance) - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
deleteSimpleInstance(SimpleInstance) - Method in class edu.stanford.smi.protege.model.framestore.TemplateFrameStore
deleteSimpleInstance(SimpleInstance) - Method in class edu.stanford.smi.protege.model.framestore.undo.UndoFrameStore
deleteSimpleInstance(SimpleInstance) - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
deleteSimpleInstance(SimpleInstance, RemoteSession) - Method in interface edu.stanford.smi.protege.server.framestore.RemoteServerFrameStore
deleteSimpleInstance(SimpleInstance, RemoteSession) - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
DeleteSimplificationFrameStore - Class in edu.stanford.smi.protege.model.framestore
DeleteSimplificationFrameStore() - Constructor for class edu.stanford.smi.protege.model.framestore.DeleteSimplificationFrameStore
deleteSlot(Slot) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
deleteSlot(Slot) - Method in class edu.stanford.smi.protege.model.framestore.ArgumentCheckingFrameStore
deleteSlot(Slot) - Method in class edu.stanford.smi.protege.model.framestore.ChangeMonitorFrameStore
deleteSlot(Slot) - Method in class edu.stanford.smi.protege.model.framestore.DeleteSimplificationFrameStore
deleteSlot(Slot) - Method in class edu.stanford.smi.protege.model.framestore.DeletionHookFrameStore
deleteSlot(Slot) - Method in class edu.stanford.smi.protege.model.framestore.EventDispatchFrameStore
deleteSlot(Slot) - Method in class edu.stanford.smi.protege.model.framestore.EventGeneratorFrameStore
deleteSlot(Slot) - Method in interface edu.stanford.smi.protege.model.framestore.FrameStore
deleteSlot(Slot) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreAdapter
deleteSlot(Slot) - Method in class edu.stanford.smi.protege.model.framestore.ModificationRecordFrameStore
deleteSlot(Slot) - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
deleteSlot(Slot) - Method in class edu.stanford.smi.protege.model.framestore.TemplateFrameStore
deleteSlot(Slot) - Method in class edu.stanford.smi.protege.model.framestore.undo.UndoFrameStore
deleteSlot(Slot) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
deleteSlot(Slot) - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
deleteSlot(Slot, RemoteSession) - Method in interface edu.stanford.smi.protege.server.framestore.RemoteServerFrameStore
deleteSlot(Slot, RemoteSession) - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
DeleteSlotCommand - Class in edu.stanford.smi.protege.model.framestore.undo
DeleteSlotCommand(FrameStore, Slot) - Constructor for class edu.stanford.smi.protege.model.framestore.undo.DeleteSlotCommand
DeletionHook - Interface in edu.stanford.smi.protege.util
DeletionHookFrameStore - Class in edu.stanford.smi.protege.model.framestore
DeletionHookFrameStore() - Constructor for class edu.stanford.smi.protege.model.framestore.DeletionHookFrameStore
DeletionHookUtil - Class in edu.stanford.smi.protege.util
DeletionHookUtil() - Constructor for class edu.stanford.smi.protege.util.DeletionHookUtil
dereference() - Method in class edu.stanford.smi.protege.storage.database.pool.ConnectionPool
deregister(RemoteSession) - Method in class edu.stanford.smi.protege.server.framestore.background.FrameCalculator
deregister(RemoteSession) - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
deregister(RemoteSession) - Method in class edu.stanford.smi.protege.server.ServerProject
deregisterWindow(Window) - Static method in class edu.stanford.smi.protege.util.ComponentUtilities
DESCRIPTION - Static variable in class edu.stanford.smi.protege.storage.clips.ClipsKnowledgeBaseFactory
DESCRIPTION - Static variable in class edu.stanford.smi.protege.storage.database.DatabaseKnowledgeBaseFactory
DESCRIPTION - Static variable in class edu.stanford.smi.protege.storage.xml.XMLKnowledgeBaseFactory
DETACH_VIEW - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
DetachCurrentView - Class in edu.stanford.smi.protege.action
DetachCurrentView() - Constructor for class edu.stanford.smi.protege.action.DetachCurrentView
detachCurrentView() - Method in class edu.stanford.smi.protege.ui.ProjectView
DIALOG_CONFIRM_DELETE_TEXT - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
DIALOG_CONFIRM_REMOVE_TEXT - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
DIALOG_SAVE_CHANGES_TEXT - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
DigestAndSalt - Class in edu.stanford.smi.protege.util
DigestAndSalt(String, String) - Constructor for class edu.stanford.smi.protege.util.DigestAndSalt
DigestedPasswordWidget - Class in edu.stanford.smi.protege.widget
DigestedPasswordWidget() - Constructor for class edu.stanford.smi.protege.widget.DigestedPasswordWidget
DIRECT_ATTACHED_CLASSES - Static variable in interface edu.stanford.smi.protege.model.Model.Slot
  Deprecated. Use #DIRECT_DOMAIN
DIRECT_DOMAIN - Static variable in interface edu.stanford.smi.protege.model.Model.Slot
DIRECT_DOMAIN - Static variable in interface edu.stanford.smi.protege.model.Model.SlotID
DIRECT_INSTANCE_ADDED - Static variable in class edu.stanford.smi.protege.event.ClsEvent
DIRECT_INSTANCE_REMOVED - Static variable in class edu.stanford.smi.protege.event.ClsEvent
DIRECT_INSTANCES - Static variable in interface edu.stanford.smi.protege.model.Model.Slot
DIRECT_INSTANCES - Static variable in interface edu.stanford.smi.protege.model.Model.SlotID
DIRECT_INSTANCES_SLOT_WIDGET_LABEL - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
DIRECT_SUBCLASS_ADDED - Static variable in class edu.stanford.smi.protege.event.ClsEvent
DIRECT_SUBCLASS_MOVED - Static variable in class edu.stanford.smi.protege.event.ClsEvent
DIRECT_SUBCLASS_REMOVED - Static variable in class edu.stanford.smi.protege.event.ClsEvent
DIRECT_SUBCLASSES - Static variable in interface edu.stanford.smi.protege.model.Model.Slot
DIRECT_SUBCLASSES - Static variable in interface edu.stanford.smi.protege.model.Model.SlotID
DIRECT_SUBSLOT_ADDED - Static variable in class edu.stanford.smi.protege.event.SlotEvent
DIRECT_SUBSLOT_MOVED - Static variable in class edu.stanford.smi.protege.event.SlotEvent
DIRECT_SUBSLOT_REMOVED - Static variable in class edu.stanford.smi.protege.event.SlotEvent
DIRECT_SUBSLOTS - Static variable in interface edu.stanford.smi.protege.model.Model.Slot
DIRECT_SUBSLOTS - Static variable in interface edu.stanford.smi.protege.model.Model.SlotID
DIRECT_SUPERCLASS_ADDED - Static variable in class edu.stanford.smi.protege.event.ClsEvent
DIRECT_SUPERCLASS_REMOVED - Static variable in class edu.stanford.smi.protege.event.ClsEvent
DIRECT_SUPERCLASSES - Static variable in interface edu.stanford.smi.protege.model.Model.Slot
DIRECT_SUPERCLASSES - Static variable in interface edu.stanford.smi.protege.model.Model.SlotID
DIRECT_SUPERSLOT_ADDED - Static variable in class edu.stanford.smi.protege.event.SlotEvent
DIRECT_SUPERSLOT_REMOVED - Static variable in class edu.stanford.smi.protege.event.SlotEvent
DIRECT_SUPERSLOTS - Static variable in interface edu.stanford.smi.protege.model.Model.Slot
DIRECT_SUPERSLOTS - Static variable in interface edu.stanford.smi.protege.model.Model.SlotID
DIRECT_TEMPLATE_FACETS - Static variable in interface edu.stanford.smi.protege.model.Model.Facet
DIRECT_TEMPLATE_FACETS - Static variable in interface edu.stanford.smi.protege.model.Model.FacetID
DIRECT_TEMPLATE_SLOTS - Static variable in interface edu.stanford.smi.protege.model.Model.Slot
DIRECT_TEMPLATE_SLOTS - Static variable in interface edu.stanford.smi.protege.model.Model.SlotID
DIRECT_TYPE - Static variable in interface edu.stanford.smi.protege.model.Model.Slot
  Deprecated. Use #DIRECT_TYPES
DIRECT_TYPE - Static variable in interface edu.stanford.smi.protege.model.Model.SlotID
  Deprecated. Use #DIRECT_TYPES
DIRECT_TYPE_ADDED - Static variable in class edu.stanford.smi.protege.event.InstanceEvent
DIRECT_TYPE_REMOVED - Static variable in class edu.stanford.smi.protege.event.InstanceEvent
DIRECT_TYPES - Static variable in interface edu.stanford.smi.protege.model.Model.Slot
DIRECT_TYPES - Static variable in interface edu.stanford.smi.protege.model.Model.SlotID
DIRECT_TYPES_SLOT_WIDGET_LABEL - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
DirectDomainWidget - Class in edu.stanford.smi.protege.widget
  TODO Class Comment
DirectDomainWidget() - Constructor for class edu.stanford.smi.protege.widget.DirectDomainWidget
DIRECTED_BINARY_RELATION - Static variable in interface edu.stanford.smi.protege.model.Model.Cls
DIRECTED_BINARY_RELATION - Static variable in interface edu.stanford.smi.protege.model.Model.ClsID
directInstanceAdded(ClsEvent) - Method in class edu.stanford.smi.protege.event.ClsAdapter
directInstanceAdded(ClsEvent) - Method in interface edu.stanford.smi.protege.event.ClsListener
directInstanceRemoved(ClsEvent) - Method in class edu.stanford.smi.protege.event.ClsAdapter
directInstanceRemoved(ClsEvent) - Method in interface edu.stanford.smi.protege.event.ClsListener
DirectInstancesList - Class in edu.stanford.smi.protege.ui
  The panel that holds the list of direct instances of one or more classes.
DirectInstancesList(Project) - Constructor for class edu.stanford.smi.protege.ui.DirectInstancesList
DirectInstancesWidget - Class in edu.stanford.smi.protege.widget
  TODO Class Comment
DirectInstancesWidget() - Constructor for class edu.stanford.smi.protege.widget.DirectInstancesWidget
DIRECTLY_INCLUDED_PROJECTS_DIALOG_TITLE - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
DirectoryClassLoader - Class in edu.stanford.smi.protege.util
DirectoryClassLoader(File, ClassLoader) - Constructor for class edu.stanford.smi.protege.util.DirectoryClassLoader
directSubclassAdded(ClsEvent) - Method in class edu.stanford.smi.protege.event.ClsAdapter
directSubclassAdded(ClsEvent) - Method in interface edu.stanford.smi.protege.event.ClsListener
directSubclassMoved(ClsEvent) - Method in class edu.stanford.smi.protege.event.ClsAdapter
directSubclassMoved(ClsEvent) - Method in interface edu.stanford.smi.protege.event.ClsListener
directSubclassRemoved(ClsEvent) - Method in class edu.stanford.smi.protege.event.ClsAdapter
directSubclassRemoved(ClsEvent) - Method in interface edu.stanford.smi.protege.event.ClsListener
directSubslotAdded(SlotEvent) - Method in class edu.stanford.smi.protege.event.SlotAdapter
directSubslotAdded(SlotEvent) - Method in interface edu.stanford.smi.protege.event.SlotListener
directSubslotMoved(SlotEvent) - Method in class edu.stanford.smi.protege.event.SlotAdapter
directSubslotMoved(SlotEvent) - Method in interface edu.stanford.smi.protege.event.SlotListener
directSubslotRemoved(SlotEvent) - Method in class edu.stanford.smi.protege.event.SlotAdapter
directSubslotRemoved(SlotEvent) - Method in interface edu.stanford.smi.protege.event.SlotListener
directSuperclassAdded(ClsEvent) - Method in class edu.stanford.smi.protege.event.ClsAdapter
directSuperclassAdded(ClsEvent) - Method in interface edu.stanford.smi.protege.event.ClsListener
directSuperclassRemoved(ClsEvent) - Method in class edu.stanford.smi.protege.event.ClsAdapter
directSuperclassRemoved(ClsEvent) - Method in interface edu.stanford.smi.protege.event.ClsListener
directSuperslotAdded(SlotEvent) - Method in class edu.stanford.smi.protege.event.SlotAdapter
directSuperslotAdded(SlotEvent) - Method in interface edu.stanford.smi.protege.event.SlotListener
directSuperslotRemoved(SlotEvent) - Method in class edu.stanford.smi.protege.event.SlotAdapter
directSuperslotRemoved(SlotEvent) - Method in interface edu.stanford.smi.protege.event.SlotListener
directTypeAdded(InstanceEvent) - Method in class edu.stanford.smi.protege.event.InstanceAdapter
directTypeAdded(InstanceEvent) - Method in interface edu.stanford.smi.protege.event.InstanceListener
directTypeRemoved(InstanceEvent) - Method in class edu.stanford.smi.protege.event.InstanceAdapter
directTypeRemoved(InstanceEvent) - Method in interface edu.stanford.smi.protege.event.InstanceListener
DirectTypesList - Class in edu.stanford.smi.protege.ui
  TODO Class Comment
DirectTypesList(Project) - Constructor for class edu.stanford.smi.protege.ui.DirectTypesList
DirectTypesWidget - Class in edu.stanford.smi.protege.widget
  TODO Class Comment
DirectTypesWidget() - Constructor for class edu.stanford.smi.protege.widget.DirectTypesWidget
directValues - Variable in class edu.stanford.smi.protege.util.GetOwnSlotValuesBrowserTextJob
disable() - Method in class edu.stanford.smi.protege.util.SwitchableListener
DISABLE_HEARTBEAT - Static variable in class edu.stanford.smi.protege.server.ServerProperties
disable_tracing() - Method in class edu.stanford.smi.protege.storage.clips.Parser
  Disable tracing.
DISABLED_ICON - Static variable in class edu.stanford.smi.protege.util.StandardAction
disconnectFromProject(RemoteServerProject, RemoteSession) - Method in class edu.stanford.smi.protege.server.Server
displayButton(String) - Method in class edu.stanford.smi.protege.widget.AbstractSlotWidget
displayButton(Action) - Method in class edu.stanford.smi.protege.widget.AbstractSlotWidget
displayErrors(String, Collection) - Method in class edu.stanford.smi.protege.ui.ProjectManager
DisplayHtml - Class in edu.stanford.smi.protege.action
  Display a URL in a top level browser.
DisplayHtml(String, String) - Constructor for class edu.stanford.smi.protege.action.DisplayHtml
DisplayHtml(ResourceKey, String) - Constructor for class edu.stanford.smi.protege.action.DisplayHtml
displayPanel() - Static method in class edu.stanford.smi.protege.ui.ArchivePanel
DisplayUtilities - Class in edu.stanford.smi.protege.ui
  A bunch of generic utilities for popping up dialogs that allow the user to do something.
DisplayUtilities() - Constructor for class edu.stanford.smi.protege.ui.DisplayUtilities
Disposable - Interface in edu.stanford.smi.protege.util
  An interface for the dispose method that is available on components.
DisposableComponent - Class in edu.stanford.smi.protege.util
  An adapter that matches the `Disposable` interface up to a JComponent.
DisposableComponent() - Constructor for class edu.stanford.smi.protege.util.DisposableComponent
dispose() - Method in class edu.stanford.smi.protege.code.generator.wrapping.AbstractWrappedInstance
dispose() - Static method in class edu.stanford.smi.protege.code.generator.wrapping.OntologyJavaMappingUtil
dispose() - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
dispose() - Method in class edu.stanford.smi.protege.model.Project
dispose() - Static method in class edu.stanford.smi.protege.model.PropertyMapUtil
dispose() - Method in class edu.stanford.smi.protege.plugin.AbstractCreateProjectPlugin
dispose() - Method in class edu.stanford.smi.protege.plugin.AbstractExportPlugin
dispose() - Method in class edu.stanford.smi.protege.plugin.AbstractPlugin
dispose() - Method in class edu.stanford.smi.protege.plugin.ProjectPluginManager
dispose() - Method in class edu.stanford.smi.protege.server.admin.ServerAdminPanel
dispose() - Method in class edu.stanford.smi.protege.server.metaproject.impl.MetaProjectImpl
dispose() - Method in interface edu.stanford.smi.protege.server.metaproject.MetaProject
dispose() - Method in class edu.stanford.smi.protege.server.RemoteClientProject
dispose(ProjectView) - Static method in class edu.stanford.smi.protege.server.util.RemoteProjectUtil
dispose() - Method in class edu.stanford.smi.protege.storage.clips.ClipsImportExportPlugin
dispose() - Method in class edu.stanford.smi.protege.storage.database.RobustConnection
dispose() - Method in class edu.stanford.smi.protege.ui.CommandHistoryPanel
dispose() - Method in class edu.stanford.smi.protege.ui.DirectInstancesList
dispose() - Method in class edu.stanford.smi.protege.ui.FormDisplay
dispose() - Method in class edu.stanford.smi.protege.ui.FormParentChildNode
dispose() - Method in class edu.stanford.smi.protege.ui.FormsPanel
dispose() - Method in class edu.stanford.smi.protege.ui.InstanceDisplay
dispose() - Method in class edu.stanford.smi.protege.ui.InstanceField
dispose() - Method in class edu.stanford.smi.protege.ui.ParentChildNode
dispose() - Method in class edu.stanford.smi.protege.ui.SetDisplaySlotPanel
dispose() - Method in class edu.stanford.smi.protege.ui.SlotSubslotNode
dispose() - Method in class edu.stanford.smi.protege.ui.SlotSubslotRoot
dispose() - Method in class edu.stanford.smi.protege.ui.SplashScreen
dispose() - Method in class edu.stanford.smi.protege.ui.SubclassPane
dispose() - Method in class edu.stanford.smi.protege.ui.SubslotPane
dispose(Component) - Static method in class edu.stanford.smi.protege.util.ComponentUtilities
dispose() - Method in interface edu.stanford.smi.protege.util.Disposable
dispose() - Method in class edu.stanford.smi.protege.util.Frames1_8_BackwardsCompatibilityProjectFixups
dispose() - Method in class edu.stanford.smi.protege.util.LazyTreeModel
dispose() - Method in class edu.stanford.smi.protege.util.LazyTreeNode
dispose() - Method in class edu.stanford.smi.protege.util.SelectableContainer
dispose() - Method in class edu.stanford.smi.protege.util.SelectableTree
dispose() - Method in class edu.stanford.smi.protege.widget.AbstractClsWidget
dispose() - Method in class edu.stanford.smi.protege.widget.AbstractSlotWidget
dispose() - Method in class edu.stanford.smi.protege.widget.AbstractTreeWidget
dispose() - Method in class edu.stanford.smi.protege.widget.AbstractWidget
dispose() - Method in class edu.stanford.smi.protege.widget.ClsFieldWidget
dispose() - Method in class edu.stanford.smi.protege.widget.ClsListWidget
dispose() - Method in class edu.stanford.smi.protege.widget.FormWidget
dispose() - Method in class edu.stanford.smi.protege.widget.InstanceFieldWidget
dispose() - Method in class edu.stanford.smi.protege.widget.InstanceListWidget
dispose() - Method in class edu.stanford.smi.protege.widget.TemplateSlotsWidget
dispose() - Method in class edu.stanford.smi.protege.widget.TextComponentWidget
dispose() - Method in interface edu.stanford.smi.protege.widget.ValuesComponent
doCopy(Collection) - Method in class edu.stanford.smi.protege.ui.ClsesTreeDragSourceListener
doCopy(Collection) - Method in class edu.stanford.smi.protege.ui.SlotsTreeDragSourceListener
doCopy(JComponent, int[], Collection) - Method in class edu.stanford.smi.protege.util.ListDragSourceListener
doCopy(Collection) - Method in class edu.stanford.smi.protege.util.TreeDragSourceListener
DOCUMENTATION - Static variable in interface edu.stanford.smi.protege.model.Model.Facet
DOCUMENTATION - Static variable in interface edu.stanford.smi.protege.model.Model.FacetID
DOCUMENTATION - Static variable in interface edu.stanford.smi.protege.model.Model.Slot
DOCUMENTATION - Static variable in interface edu.stanford.smi.protege.model.Model.SlotID
DOCUMENTATION_SLOT_WIDGET_LABEL - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
DocumentationWidget - Class in edu.stanford.smi.protege.widget
  The slot widget for displaying and editing frame documentation.
DocumentationWidget() - Constructor for class edu.stanford.smi.protege.widget.DocumentationWidget
DocumentChangedListener - Class in edu.stanford.smi.protege.util
  An adapter that changes the document events that come from swing text widgets into simple "change" events.
DocumentChangedListener() - Constructor for class edu.stanford.smi.protege.util.DocumentChangedListener
doDrop(JTree, Object, int, Object) - Method in class edu.stanford.smi.protege.ui.ClsesTreeTarget
doDrop(JTree, Object, int, Object) - Method in class edu.stanford.smi.protege.ui.SlotsTreeTarget
doDrop(JList, Collection, int, Object) - Method in class edu.stanford.smi.protege.util.ListTarget
doDrop(JTree, Object, int, Object) - Method in class edu.stanford.smi.protege.util.TreeTarget
doDrop(JTree, Collection, int, Object) - Method in class edu.stanford.smi.protege.util.TreeTarget
doIt() - Method in interface edu.stanford.smi.protege.model.framestore.undo.Command
doIt() - Method in class edu.stanford.smi.protege.model.framestore.undo.DeleteFrameCommand
doIt() - Method in class edu.stanford.smi.protege.model.framestore.undo.MacroCommand
doIt() - Method in class edu.stanford.smi.protege.model.framestore.undo.ReplaceFrameCommand
doLayout() - Method in class edu.stanford.smi.protege.util.LabeledComponent
DOMAIN - Static variable in interface edu.stanford.smi.protege.model.Model.Slot
DOMAIN - Static variable in interface edu.stanford.smi.protege.model.Model.SlotID
DOMAIN_SLOT_WIDGET_LABEL - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
doMove(Collection) - Method in class edu.stanford.smi.protege.ui.ClsesTreeDragSourceListener
doMove(Collection) - Method in class edu.stanford.smi.protege.ui.SlotsTreeDragSourceListener
doMove(JComponent, int[], Collection) - Method in class edu.stanford.smi.protege.util.ListDragSourceListener
doMove(Collection) - Method in class edu.stanford.smi.protege.util.TreeDragSourceListener
Done() - Method in class edu.stanford.smi.protege.storage.clips.SimpleCharStream
  Reset buffer when finished.
doOperations() - Method in class edu.stanford.smi.protege.model.Transaction
  returns true if the the results of this method should be committed
doRecord(Method) - Method in class edu.stanford.smi.protege.model.framestore.JournalingFrameStoreHandler
doTabbedFormLayout() - Method in class edu.stanford.smi.protege.ui.InstanceDisplay
doTeeOuput() - Static method in class edu.stanford.smi.protege.server.socket.TeeAspect
DoubleClickActionAdapter - Class in edu.stanford.smi.protege.util
  An adapter that causes the raw "mouse clicked" event to fire an action if the real event is actually a double click.
DoubleClickActionAdapter(Action) - Constructor for class edu.stanford.smi.protege.util.DoubleClickActionAdapter
DoubleClickAdapter - Class in edu.stanford.smi.protege.util
  An adapter that causes the raw "mouse clicked" event to fire a double click event.
DoubleClickAdapter() - Constructor for class edu.stanford.smi.protege.util.DoubleClickAdapter
DoubleClickListener - Interface in edu.stanford.smi.protege.util
  Callback interface for double-clicks
dragDropEnd(DragSourceDropEvent) - Method in class edu.stanford.smi.protege.util.ListDragSourceListener
dragDropEnd(DragSourceDropEvent) - Method in class edu.stanford.smi.protege.util.TreeDragSourceListener
dragEnter(DragSourceDragEvent) - Method in class edu.stanford.smi.protege.util.ListDragSourceListener
dragEnter(DropTargetDragEvent) - Method in class edu.stanford.smi.protege.util.ListTarget
dragEnter(DragSourceDragEvent) - Method in class edu.stanford.smi.protege.util.TreeDragSourceListener
dragEnter(DropTargetDragEvent) - Method in class edu.stanford.smi.protege.util.TreeTarget
dragExit(DragSourceEvent) - Method in class edu.stanford.smi.protege.util.ListDragSourceListener
dragExit(DropTargetEvent) - Method in class edu.stanford.smi.protege.util.ListTarget
dragExit(DragSourceEvent) - Method in class edu.stanford.smi.protege.util.TreeDragSourceListener
dragExit(DropTargetEvent) - Method in class edu.stanford.smi.protege.util.TreeTarget
dragGestureRecognized(DragGestureEvent) - Method in class edu.stanford.smi.protege.util.ListDragSourceListener
dragGestureRecognized(DragGestureEvent) - Method in class edu.stanford.smi.protege.util.TreeDragSourceListener
dragOver(DragSourceDragEvent) - Method in class edu.stanford.smi.protege.util.ListDragSourceListener
dragOver(DropTargetDragEvent) - Method in class edu.stanford.smi.protege.util.ListTarget
dragOver(DragSourceDragEvent) - Method in class edu.stanford.smi.protege.util.TreeDragSourceListener
dragOver(DropTargetDragEvent) - Method in class edu.stanford.smi.protege.util.TreeTarget
dragScroll(DropTargetDragEvent) - Method in class edu.stanford.smi.protege.util.ListTarget
drop(DropTargetDropEvent) - Method in class edu.stanford.smi.protege.util.ListTarget
drop(DropTargetDropEvent) - Method in class edu.stanford.smi.protege.util.TreeTarget
DROP_TARGET - Static variable in class edu.stanford.smi.protege.util.DefaultRenderer
DROP_TARGET_AREA - Static variable in class edu.stanford.smi.protege.util.DefaultRenderer
DROP_TARGET_AREA_ABOVE - Static variable in class edu.stanford.smi.protege.util.DefaultRenderer
DROP_TARGET_AREA_BELOW - Static variable in class edu.stanford.smi.protege.util.DefaultRenderer
DROP_TARGET_AREA_ON - Static variable in class edu.stanford.smi.protege.util.DefaultRenderer
dropActionChanged(DragSourceDragEvent) - Method in class edu.stanford.smi.protege.util.ListDragSourceListener
dropActionChanged(DropTargetDragEvent) - Method in class edu.stanford.smi.protege.util.ListTarget
dropActionChanged(DragSourceDragEvent) - Method in class edu.stanford.smi.protege.util.TreeDragSourceListener
dropActionChanged(DropTargetDragEvent) - Method in class edu.stanford.smi.protege.util.TreeTarget
dumpFrameStores() - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreManager
dumpFrameStores() - Method in class edu.stanford.smi.protege.model.framestore.MergingNarrowFrameStore
dumpFrameStores(Level) - Method in class edu.stanford.smi.protege.model.framestore.MergingNarrowFrameStore
dumpListeners(Level) - Method in class edu.stanford.smi.protege.model.framestore.EventDispatchFrameStore

## E

EditableJavaCodeGeneratorOptions - Interface in edu.stanford.smi.protege.code.generator.wrapping
editString(Component, String, Object, Validator) - Static method in class edu.stanford.smi.protege.ui.DisplayUtilities
EditStringPanel - Class in edu.stanford.smi.protege.ui
  A panel that allows the user to edit a string.
EditStringPanel(Object, String) - Constructor for class edu.stanford.smi.protege.ui.EditStringPanel
edu.stanford.smi.protege - package edu.stanford.smi.protege
edu.stanford.smi.protege.action - package edu.stanford.smi.protege.action
edu.stanford.smi.protege.code.generator.wrapping - package edu.stanford.smi.protege.code.generator.wrapping
edu.stanford.smi.protege.event - package edu.stanford.smi.protege.event
edu.stanford.smi.protege.exception - package edu.stanford.smi.protege.exception
edu.stanford.smi.protege.model - package edu.stanford.smi.protege.model
edu.stanford.smi.protege.model.framestore - package edu.stanford.smi.protege.model.framestore
edu.stanford.smi.protege.model.framestore.cleandispatch - package edu.stanford.smi.protege.model.framestore.cleandispatch
edu.stanford.smi.protege.model.framestore.undo - package edu.stanford.smi.protege.model.framestore.undo
edu.stanford.smi.protege.model.query - package edu.stanford.smi.protege.model.query
edu.stanford.smi.protege.plugin - package edu.stanford.smi.protege.plugin
edu.stanford.smi.protege.resource - package edu.stanford.smi.protege.resource
edu.stanford.smi.protege.server - package edu.stanford.smi.protege.server
edu.stanford.smi.protege.server.admin - package edu.stanford.smi.protege.server.admin
edu.stanford.smi.protege.server.framestore - package edu.stanford.smi.protege.server.framestore
edu.stanford.smi.protege.server.framestore.background - package edu.stanford.smi.protege.server.framestore.background
edu.stanford.smi.protege.server.job - package edu.stanford.smi.protege.server.job
edu.stanford.smi.protege.server.metaproject - package edu.stanford.smi.protege.server.metaproject
edu.stanford.smi.protege.server.metaproject.impl - package edu.stanford.smi.protege.server.metaproject.impl
edu.stanford.smi.protege.server.narrowframestore - package edu.stanford.smi.protege.server.narrowframestore
edu.stanford.smi.protege.server.socket - package edu.stanford.smi.protege.server.socket
edu.stanford.smi.protege.server.socket.deflate - package edu.stanford.smi.protege.server.socket.deflate
edu.stanford.smi.protege.server.update - package edu.stanford.smi.protege.server.update
edu.stanford.smi.protege.server.util - package edu.stanford.smi.protege.server.util
edu.stanford.smi.protege.storage.clips - package edu.stanford.smi.protege.storage.clips
edu.stanford.smi.protege.storage.database - package edu.stanford.smi.protege.storage.database
edu.stanford.smi.protege.storage.database.pool - package edu.stanford.smi.protege.storage.database.pool
edu.stanford.smi.protege.storage.database.stmt - package edu.stanford.smi.protege.storage.database.stmt
edu.stanford.smi.protege.storage.xml - package edu.stanford.smi.protege.storage.xml
edu.stanford.smi.protege.ui - package edu.stanford.smi.protege.ui
edu.stanford.smi.protege.util - package edu.stanford.smi.protege.util
edu.stanford.smi.protege.util.transaction - package edu.stanford.smi.protege.util.transaction
edu.stanford.smi.protege.util.transaction.cache - package edu.stanford.smi.protege.util.transaction.cache
edu.stanford.smi.protege.util.transaction.cache.impl - package edu.stanford.smi.protege.util.transaction.cache.impl
edu.stanford.smi.protege.util.transaction.cache.serialize - package edu.stanford.smi.protege.util.transaction.cache.serialize
edu.stanford.smi.protege.widget - package edu.stanford.smi.protege.widget
EMPTY_ARRAY_LIST - Static variable in class edu.stanford.smi.protege.util.CollectionUtilities
emptyCatchBlock(Throwable) - Static method in class edu.stanford.smi.protege.util.Log
emptyMapInstance(Instance) - Static method in class edu.stanford.smi.protege.model.PropertyMapUtil
enable() - Method in class edu.stanford.smi.protege.util.SwitchableListener
enable_tracing() - Method in class edu.stanford.smi.protege.storage.clips.Parser
  Enable tracing.
enableAllAntialiasing(Graphics) - Static method in class edu.stanford.smi.protege.util.ComponentUtilities
enableButton(AllowableAction, boolean) - Method in class edu.stanford.smi.protege.ui.ClsesPanel
enableButtons(boolean) - Method in class edu.stanford.smi.protege.ui.ClsesPanel
enableTextAntialiasing(Graphics) - Static method in class edu.stanford.smi.protege.util.ComponentUtilities
ENCODINGS_DIALOG_TITLE - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
EncodingsPanel - Class in edu.stanford.smi.protege.ui
EncodingsPanel() - Constructor for class edu.stanford.smi.protege.ui.EncodingsPanel
endBatch() - Method in class edu.stanford.smi.protege.storage.database.DefaultDatabaseFrameDb
endColumn - Variable in class edu.stanford.smi.protege.storage.clips.Token
  The column number of the last character of this Token.
endElement(String, String, String) - Method in class edu.stanford.smi.protege.storage.xml.XMLHandler
endLine - Variable in class edu.stanford.smi.protege.storage.clips.Token
  The line number of the last character of this Token.
endTransaction(boolean) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
  Deprecated. Use #commitTransaction or #rollbackTransaction
endTransaction() - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
  Deprecated. Use #commitTransaction
endTransaction() - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
  Deprecated. Use #commitTransaction() Ends the recently opened transaction and commits the state.
endTransaction(boolean) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
  Deprecated. Use #commitTransaction or #rollbackTransaction() Ends the recently opened transaction and commits or rollback based on doCommit value
endTransaction(boolean) - Method in interface edu.stanford.smi.protege.model.Storage
endTransaction() - Method in class edu.stanford.smi.protege.server.framestore.Registration
endTransaction() - Method in class edu.stanford.smi.protege.widget.AbstractWidget
  Deprecated. Use commitTranscation() or rollbackTransaction()
ensureEmptyTableExists() - Method in class edu.stanford.smi.protege.storage.database.DefaultDatabaseFrameDb
ensureExtension(String, String) - Static method in class edu.stanford.smi.protege.util.FileUtilities
ensureExtension(URI, String) - Static method in class edu.stanford.smi.protege.util.URIUtilities
ensureIconFlagsLoaded() - Method in class edu.stanford.smi.protege.ui.FrameRenderer
ensureSelectionIsVisible(JList) - Static method in class edu.stanford.smi.protege.util.ComponentUtilities
enter(Object, String, Object[]) - Method in class edu.stanford.smi.protege.util.DefaultLogger
enter(Object, String, Object[]) - Method in class edu.stanford.smi.protege.util.LegacyLoggerImpl
enter(Object, String) - Static method in class edu.stanford.smi.protege.util.Log
  Deprecated. Use #getLogger().enter()
enter(Object, String, Object) - Static method in class edu.stanford.smi.protege.util.Log
  Deprecated. Use #getLogger().enter()
enter(Object, String, Object, Object) - Static method in class edu.stanford.smi.protege.util.Log
  Deprecated. Use #getLogger().enter()
enter(Object, String, Object, Object, Object) - Static method in class edu.stanford.smi.protege.util.Log
  Deprecated. Use #getLogger().enter()
enter(Object, String, Object, Object, Object, Object) - Static method in class edu.stanford.smi.protege.util.Log
  Deprecated. Use #getLogger().enter()
enter(Object, String, Object, Object, Object, Object, Object) - Static method in class edu.stanford.smi.protege.util.Log
  Deprecated. Use #getLogger().enter()
EOF - Static variable in interface edu.stanford.smi.protege.storage.clips.ParserConstants
  End of File.
eol - Variable in exception edu.stanford.smi.protege.storage.clips.ParseException
  The end of line string for this machine.
EOL - Static variable in interface edu.stanford.smi.protege.storage.clips.ParserConstants
  RegularExpression Id.
equals(Object) - Method in class edu.stanford.smi.protege.code.generator.wrapping.AbstractWrappedInstance
equals(Object, Object) - Static method in class edu.stanford.smi.protege.model.AbstractFacetConstraint
equals(Object) - Method in class edu.stanford.smi.protege.model.BrowserSlotPattern
equals(Object) - Method in class edu.stanford.smi.protege.model.DefaultFrame
equals(Object, Object) - Static method in class edu.stanford.smi.protege.model.DefaultFrame
equals(Object, Object) - Static method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
equals(Object) - Method in class edu.stanford.smi.protege.model.FrameID
equals(Object) - Method in class edu.stanford.smi.protege.model.FrameSlotCombination
equals(Object, Object) - Static method in class edu.stanford.smi.protege.model.FrameSlotCombination
equals(Object, Object) - Static method in class edu.stanford.smi.protege.model.framestore.ClosureCachingBasicFrameStore
equals(Object, Object) - Static method in class edu.stanford.smi.protege.model.framestore.InMemoryFrameDb
equals(Object) - Method in class edu.stanford.smi.protege.model.framestore.Record
equals(Object) - Method in class edu.stanford.smi.protege.model.framestore.ReferenceImpl
equals(Object, Object) - Static method in class edu.stanford.smi.protege.model.framestore.ReferenceImpl
equals(Object) - Method in class edu.stanford.smi.protege.model.framestore.Sft
equals(Object, Object) - Static method in class edu.stanford.smi.protege.model.framestore.Sft
equals(Object, Object) - Static method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
equals(Object, Object) - Static method in class edu.stanford.smi.protege.model.Project
EQUALS - Static variable in interface edu.stanford.smi.protege.model.query.Query
equals(Object) - Method in class edu.stanford.smi.protege.model.WidgetDescriptor
equals(Object) - Method in class edu.stanford.smi.protege.resource.ResourceKey
equals(Object) - Method in class edu.stanford.smi.protege.server.framestore.background.ClientAndFrame
equals(Object) - Method in class edu.stanford.smi.protege.server.metaproject.impl.OperationImpl
equals(Object) - Method in class edu.stanford.smi.protege.server.metaproject.impl.PolicyControlledObjectImpl
equals(Object) - Method in class edu.stanford.smi.protege.server.metaproject.impl.PropertyValueImpl
equals(Object) - Method in class edu.stanford.smi.protege.server.metaproject.impl.UnbackedOperationImpl
equals(Object) - Method in class edu.stanford.smi.protege.server.metaproject.impl.UserImpl
equals(Object) - Method in class edu.stanford.smi.protege.server.metaproject.impl.WrappedProtegeInstanceImpl
equals(Object) - Method in class edu.stanford.smi.protege.server.Session
equals(Object) - Method in class edu.stanford.smi.protege.server.socket.RmiSocketFactory
equals(Object, Object) - Static method in class edu.stanford.smi.protege.storage.clips.ClipsFileWriter
equals(Object, Object) - Static method in class edu.stanford.smi.protege.storage.clips.Parser
equals(Object) - Method in class edu.stanford.smi.protege.storage.database.pool.DatabaseParam
equals(Object, Object) - Static method in class edu.stanford.smi.protege.ui.Finder
equals(Object, Object) - Static method in class edu.stanford.smi.protege.ui.FormDisplay
equals(Object, Object) - Static method in class edu.stanford.smi.protege.ui.InstanceDisplay
equals(Object) - Method in class edu.stanford.smi.protege.util.AbstractEvent
equals(Object, Object) - Static method in class edu.stanford.smi.protege.util.AbstractEvent
equals(Object, Object) - Static method in class edu.stanford.smi.protege.util.ComponentUtilities
equals(Object, Object) - Static method in class edu.stanford.smi.protege.util.DefaultRenderer
equals(Object) - Method in class edu.stanford.smi.protege.util.FrameWithBrowserText
equals(Object, Object) - Static method in class edu.stanford.smi.protege.util.LazyTreeNode
equals(Object, Object) - Static method in class edu.stanford.smi.protege.util.ListenerCollection
equals(Object, Object) - Static method in class edu.stanford.smi.protege.util.SelectableContainer
equals(Object, Object) - Static method in class edu.stanford.smi.protege.util.StandardAction
equals(Object, Object) - Static method in class edu.stanford.smi.protege.util.SystemUtilities
equals(Object) - Method in class edu.stanford.smi.protege.util.transaction.cache.CacheResult
equals(Object, Object) - Static method in class edu.stanford.smi.protege.widget.AbstractWidget
equalsList(Collection<?>, Collection<?>) - Static method in class edu.stanford.smi.protege.util.CollectionUtilities
equalsSet(Collection, Collection) - Static method in class edu.stanford.smi.protege.util.CollectionUtilities
error(SAXParseException) - Method in class edu.stanford.smi.protege.storage.xml.XMLHandler
error(X) - Method in class edu.stanford.smi.protege.util.DefaultErrorHandler
error(String, Object, String, Object[]) - Method in class edu.stanford.smi.protege.util.DefaultLogger
error(E) - Method in interface edu.stanford.smi.protege.util.ErrorHandler
  Receive notification of a recoverable error.
error(String, Object, String, Object[]) - Method in class edu.stanford.smi.protege.util.LegacyLoggerImpl
error(String, Object, String) - Static method in class edu.stanford.smi.protege.util.Log
  Deprecated. Use getLogger().severe();
error(String, Object, String, Object) - Static method in class edu.stanford.smi.protege.util.Log
  Deprecated. Use getLogger().severe();
error(String, Object, String, Object, Object) - Static method in class edu.stanford.smi.protege.util.Log
  Deprecated. Use getLogger().severe();
error(String, Object, String, Object, Object, Object) - Static method in class edu.stanford.smi.protege.util.Log
  Deprecated. Use getLogger().severe();
error(String, Object, String, Object, Object, Object, Object) - Static method in class edu.stanford.smi.protege.util.Log
  Deprecated. Use getLogger().severe();
error(String, Object, String, Object, Object, Object, Object, Object) - Static method in class edu.stanford.smi.protege.util.Log
  Deprecated. Use getLogger().severe();
ERROR_DIALOG_TITLE - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
ErrorHandler<E extends Throwable> - Interface in edu.stanford.smi.protege.util
  Basic interface for Protege error handlers.
ERRORS_DIALOG_TITLE - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
escape(char) - Static method in class edu.stanford.smi.protege.storage.xml.XMLUtil
  If there is a suitable entity reference for this character, return it.
escape(String) - Static method in class edu.stanford.smi.protege.storage.xml.XMLUtil
  Escapes a string so it may be returned as text content or attribute value.
Event - Interface in edu.stanford.smi.protege.event
EventDispatcher - Interface in edu.stanford.smi.protege.util
  Interface for a generic dispatcher of events.
EventDispatchFrameStore - Class in edu.stanford.smi.protege.model.framestore
EventDispatchFrameStore(KnowledgeBase) - Constructor for class edu.stanford.smi.protege.model.framestore.EventDispatchFrameStore
EventGeneratorFrameStore - Class in edu.stanford.smi.protege.model.framestore
EventGeneratorFrameStore(KnowledgeBase) - Constructor for class edu.stanford.smi.protege.model.framestore.EventGeneratorFrameStore
EventSinkFrameStore - Class in edu.stanford.smi.protege.model.framestore
EventSinkFrameStore() - Constructor for class edu.stanford.smi.protege.model.framestore.EventSinkFrameStore
exception(Throwable, Object, String, Object[]) - Method in class edu.stanford.smi.protege.util.DefaultLogger
exception(Throwable, Object, String, Object[]) - Method in class edu.stanford.smi.protege.util.LegacyLoggerImpl
exception(Throwable, Object, String) - Static method in class edu.stanford.smi.protege.util.Log
  Deprecated. Use getLogger().severe();
exception(Throwable, Object, String, Object) - Static method in class edu.stanford.smi.protege.util.Log
  Deprecated. Use getLogger().severe();
exception(Throwable, Object, String, Object, Object) - Static method in class edu.stanford.smi.protege.util.Log
  Deprecated. Use getLogger().severe();
exception(Throwable, Object, String, Object, Object, Object) - Static method in class edu.stanford.smi.protege.util.Log
  Deprecated. Use getLogger().severe();
exception(Throwable, Object, String, Object, Object, Object, Object) - Static method in class edu.stanford.smi.protege.util.Log
  Deprecated. Use getLogger().severe();
exception(Throwable, Object, String, Object, Object, Object, Object, Object) - Static method in class edu.stanford.smi.protege.util.Log
  Deprecated. Use getLogger().severe();
EXCLUSIVE - Static variable in interface edu.stanford.smi.protege.storage.clips.ParserConstants
  RegularExpression Id.
ExclusiveRunnable - Class in edu.stanford.smi.protege.util
  This class is a Runnable that only allows one thread to be executing at a time.
ExclusiveRunnable() - Constructor for class edu.stanford.smi.protege.util.ExclusiveRunnable
exclusiveTransaction() - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
exclusiveTransaction() - Method in class edu.stanford.smi.protege.util.transaction.TransactionMonitor
execute() - Method in class edu.stanford.smi.protege.model.Transaction
  returns true if the transaction was committed This method handles the logic of executing a transaction, including the necessary synchronization.
execute() - Method in class edu.stanford.smi.protege.util.ExclusiveRunnable
  This method is where the developer implements his own execute procedure.
execute() - Method in class edu.stanford.smi.protege.util.GetInstancesAndBrowserTextJob
execute() - Method in class edu.stanford.smi.protege.util.GetOwnSlotValuesBrowserTextJob
execute() - Method in class edu.stanford.smi.protege.util.ProtegeJob
  This method will either execute the job.run() method or - in the case that the caller is a client to a Protege server - it will copy this job to the server so that it can execute there.
execute() - Method in class edu.stanford.smi.protege.util.ServerJob
execute() - Method in class edu.stanford.smi.protege.util.Wizard
executeProtegeJob(ProtegeJob) - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
executeProtegeJob(ProtegeJob, RemoteSession) - Method in interface edu.stanford.smi.protege.server.framestore.RemoteServerFrameStore
executeProtegeJob(ProtegeJob, RemoteSession) - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
executeQuery(Query) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
executeQuery(Query, QueryCallback) - Method in class edu.stanford.smi.protege.model.framestore.AbstractFrameStoreInvocationHandler
executeQuery(Query, QueryCallback) - Method in class edu.stanford.smi.protege.model.framestore.ArgumentCheckingFrameStore
executeQuery(Query, QueryCallback) - Method in class edu.stanford.smi.protege.model.framestore.CallCachingFrameStore
executeQuery(Query, QueryCallback) - Method in class edu.stanford.smi.protege.model.framestore.ClosureCachingBasicFrameStore
executeQuery(Query, QueryCallback) - Method in interface edu.stanford.smi.protege.model.framestore.FrameStore
  The executeQuery method allows for complex queries.
executeQuery(Query, QueryCallback) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreAdapter
executeQuery(Query, QueryCallback) - Method in class edu.stanford.smi.protege.model.framestore.ImmutableNamesNarrowFrameStore
executeQuery(Query, QueryCallback) - Method in class edu.stanford.smi.protege.model.framestore.InMemoryFrameDb
  TODO implement executeQuery
executeQuery(Query, QueryCallback) - Method in class edu.stanford.smi.protege.model.framestore.JournalingFrameStoreHandler
executeQuery(Query, QueryCallback) - Method in class edu.stanford.smi.protege.model.framestore.MergingNarrowFrameStore
executeQuery(Query, QueryCallback) - Method in class edu.stanford.smi.protege.model.framestore.ModificationFrameStore
executeQuery(Query, QueryCallback) - Method in interface edu.stanford.smi.protege.model.framestore.NarrowFrameStore
  The executeQuery method allows for complex queries.
executeQuery(Query, QueryCallback) - Method in class edu.stanford.smi.protege.model.framestore.PlaceHolderNarrowFrameStore
executeQuery(Query, QueryCallback) - Method in class edu.stanford.smi.protege.model.framestore.ReadOnlyFrameStoreHandler
executeQuery(Query, QueryCallback) - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
executeQuery(Query, QueryCallback) - Method in class edu.stanford.smi.protege.model.framestore.TemplateFrameStore
executeQuery(Query, QueryCallback) - Method in class edu.stanford.smi.protege.model.framestore.TraceFrameStoreHandler
executeQuery(Query) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
executeQuery(Query, QueryCallback) - Method in class edu.stanford.smi.protege.server.framestore.LastUsageInvocationHandler
executeQuery(Query, QueryCallback) - Method in class edu.stanford.smi.protege.server.framestore.LocalizeFrameStoreHandler
executeQuery(Query, QueryCallback) - Method in class edu.stanford.smi.protege.server.framestore.ReadAccessEnforcementFrameStore
executeQuery(Query, QueryCallback) - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
executeQuery(Query, RemoteSession) - Method in interface edu.stanford.smi.protege.server.framestore.RemoteServerFrameStore
executeQuery(Query, RemoteSession) - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
executeQuery(Query, RemoteSession) - Method in interface edu.stanford.smi.protege.server.narrowframestore.RemoteServerNarrowFrameStore
executeQuery(Query, RemoteSession) - Method in class edu.stanford.smi.protege.server.narrowframestore.ServerNarrowFrameStore
executeQuery(PreparedStatement) - Static method in class edu.stanford.smi.protege.storage.database.AbstractDatabaseFrameDb
executeQuery(String) - Method in class edu.stanford.smi.protege.storage.database.AbstractDatabaseFrameDb
executeQuery(String, int) - Method in class edu.stanford.smi.protege.storage.database.AbstractDatabaseFrameDb
executeQuery(Query, QueryCallback) - Method in class edu.stanford.smi.protege.storage.database.AbstractDatabaseFrameDb
executeQuery(Query, QueryCallback) - Method in class edu.stanford.smi.protege.storage.database.IdleConnectionNarrowFrameStore
executeQuery(Query, QueryCallback) - Method in class edu.stanford.smi.protege.storage.database.ValueCachingNarrowFrameStore
executeServerJob(ServerJob, RemoteSession) - Method in interface edu.stanford.smi.protege.server.RemoteServer
executeServerJob(ServerJob, RemoteSession) - Method in class edu.stanford.smi.protege.server.Server
executeUpdate(PreparedStatement) - Static method in class edu.stanford.smi.protege.storage.database.AbstractDatabaseFrameDb
executeUpdate(String) - Method in class edu.stanford.smi.protege.storage.database.AbstractDatabaseFrameDb
existsTransaction() - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
existsTransaction() - Method in class edu.stanford.smi.protege.util.transaction.TransactionMonitor
exit(Object, String, Object[]) - Method in class edu.stanford.smi.protege.util.DefaultLogger
exit(Object, String, Object[]) - Method in class edu.stanford.smi.protege.util.LegacyLoggerImpl
exit(Object, String) - Static method in class edu.stanford.smi.protege.util.Log
  Deprecated. Use getLogger().exiting();
exit() - Static method in class edu.stanford.smi.protege.util.SystemUtilities
ExitApplication - Class in edu.stanford.smi.protege.action
  Request that the application exit.
ExitApplication() - Constructor for class edu.stanford.smi.protege.action.ExitApplication
exitApplicationRequest() - Method in class edu.stanford.smi.protege.ui.ProjectManager
expandAll() - Method in class edu.stanford.smi.protege.widget.AbstractTreeWidget
ExpandBuff(boolean) - Method in class edu.stanford.smi.protege.storage.clips.SimpleCharStream
expandRoot() - Method in class edu.stanford.smi.protege.widget.AbstractTreeWidget
expectedTokenSequences - Variable in exception edu.stanford.smi.protege.storage.clips.ParseException
  Each entry in this array is an array of integers.
expired() - Method in class edu.stanford.smi.protege.server.framestore.background.WorkInfo
export() - Method in class edu.stanford.smi.protege.action.ExportToCsvAction
EXPORT_BROWSER_TEXT_PROPERTY - Static variable in class edu.stanford.smi.protege.action.ExportToCsvUtil
EXPORT_DIALOG_TITLE - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
EXPORT_FILE_EXTENSION - Static variable in class edu.stanford.smi.protege.action.ExportToCsvUtil
EXPORT_FILE_EXTENSION_PROPERTY - Static variable in class edu.stanford.smi.protege.action.ExportToCsvUtil
EXPORT_FILE_PREFIX - Static variable in class edu.stanford.smi.protege.action.ExportToCsvUtil
EXPORT_FILE_PREFIX_PROPERTY - Static variable in class edu.stanford.smi.protege.action.ExportToCsvUtil
EXPORT_METADATA_PROPERTY - Static variable in class edu.stanford.smi.protege.action.ExportToCsvUtil
EXPORT_SUPERCLASS_PROPERTY - Static variable in class edu.stanford.smi.protege.action.ExportToCsvUtil
EXPORT_TO_CSV_OPERATION - Static variable in class edu.stanford.smi.protege.action.ExportToCsvAction
exportCompletedSuccessful() - Method in class edu.stanford.smi.protege.action.ExportToCsvAction
ExportConfigurationPanel - Class in edu.stanford.smi.protege.ui
ExportConfigurationPanel(KnowledgeBase) - Constructor for class edu.stanford.smi.protege.ui.ExportConfigurationPanel
ExportPlugin - Interface in edu.stanford.smi.protege.plugin
ExportPluginAction - Class in edu.stanford.smi.protege.action
  Action to build a project from component pieces (files)
ExportPluginAction(ExportPlugin) - Constructor for class edu.stanford.smi.protege.action.ExportPluginAction
exportProject(Project) - Method in interface edu.stanford.smi.protege.plugin.ExportProjectPlugin
exportProject(Project) - Method in class edu.stanford.smi.protege.storage.clips.ClipsFilesExportProjectPlugin
ExportProjectPlugin - Interface in edu.stanford.smi.protege.plugin
  A plugin that controls the export of all or part of a knowledge to "somewhere else".
exportProjectRequest(ExportPlugin) - Method in class edu.stanford.smi.protege.ui.ProjectManager
exportProjectToNewFormat(Project) - Method in class edu.stanford.smi.protege.plugin.AbstractBackendExportPlugin
ExportToCsvAction - Class in edu.stanford.smi.protege.action
  This action class allows the export of an instance list to a CSV file.
ExportToCsvAction(KnowledgeBase) - Constructor for class edu.stanford.smi.protege.action.ExportToCsvAction
ExportToCsvAction(KnowledgeBase, String, Icon) - Constructor for class edu.stanford.smi.protege.action.ExportToCsvAction
ExportToCsvUtil - Class in edu.stanford.smi.protege.action
  Utility methods for getting/setting the configuration parameters for the export to CSV action (See `ExportToCsvAction`).
ExportToCsvUtil() - Constructor for class edu.stanford.smi.protege.action.ExportToCsvUtil
ExportWizard - Class in edu.stanford.smi.protege.plugin
  TODO Class Comment
ExportWizard(JComponent, Project) - Constructor for class edu.stanford.smi.protege.plugin.ExportWizard
ExportWizardPage - Class in edu.stanford.smi.protege.plugin
  TODO Class Comment
ExportWizardPage(String, ExportWizard) - Constructor for class edu.stanford.smi.protege.plugin.ExportWizardPage
extendSelection(Cls) - Method in class edu.stanford.smi.protege.ui.SubclassPane
extendSelection(Slot) - Method in class edu.stanford.smi.protege.ui.SubslotPane
extendSelection(JTree, Object) - Static method in class edu.stanford.smi.protege.util.ComponentUtilities
EXTENSION - Static variable in interface edu.stanford.smi.protege.storage.clips.ParserConstants
  RegularExpression Id.
EXTENSION_SEPARATOR - Static variable in class edu.stanford.smi.protege.util.FileUtilities
ExtensionFilter - Class in edu.stanford.smi.protege.util
  A file filter the works on a particular extension.
ExtensionFilter(Iterator<String>, String) - Constructor for class edu.stanford.smi.protege.util.ExtensionFilter
ExtensionFilter(String, String) - Constructor for class edu.stanford.smi.protege.util.ExtensionFilter
EXTRA_MANIFEST_PATH - Static variable in class edu.stanford.smi.protege.plugin.PluginUtilities
EXTRA_MANIFEST_PATH - Static variable in class edu.stanford.smi.protege.util.ApplicationProperties
extractMetaProjectLocation(String) - Method in class edu.stanford.smi.protege.server.Server

## F

Facet - Interface in edu.stanford.smi.protege.model
  A description of a constraint on the value of a frame-slot binding.
FACET - Static variable in interface edu.stanford.smi.protege.model.Model.Cls
FACET - Static variable in interface edu.stanford.smi.protege.model.Model.ClsID
facet(Cls, Slot) - Method in class edu.stanford.smi.protege.storage.clips.Parser
FACET - Static variable in interface edu.stanford.smi.protege.storage.xml.XMLString.ElementName
FACET_CREATE - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
FACET_CREATED - Static variable in class edu.stanford.smi.protege.event.KnowledgeBaseEvent
FACET_DELETE - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
FACET_DELETED - Static variable in class edu.stanford.smi.protege.event.KnowledgeBaseEvent
FACET_REFERENCE - Static variable in interface edu.stanford.smi.protege.storage.xml.XMLString.ElementName
FACET_TYPE - Static variable in interface edu.stanford.smi.protege.storage.xml.XMLString.AttributeValue
FACET_VIEW - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
FACET_VIEW_REFERENCES - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
FacetCheckingFrameStore - Class in edu.stanford.smi.protege.model.framestore
FacetCheckingFrameStore() - Constructor for class edu.stanford.smi.protege.model.framestore.FacetCheckingFrameStore
FacetCheckingFrameStore.AbstractClassException - Exception in edu.stanford.smi.protege.model.framestore
FacetCheckingFrameStore.AbstractClassException() - Constructor for exception edu.stanford.smi.protege.model.framestore.FacetCheckingFrameStore.AbstractClassException
FacetCheckingFrameStore.FacetException - Exception in edu.stanford.smi.protege.model.framestore
FacetCheckingFrameStore.FacetException() - Constructor for exception edu.stanford.smi.protege.model.framestore.FacetCheckingFrameStore.FacetException
FacetConstraint - Interface in edu.stanford.smi.protege.model
  Programmatic implementation of the constraint expressed by a specific facet.
facetCreated(KnowledgeBaseEvent) - Method in class edu.stanford.smi.protege.event.KnowledgeBaseAdapter
facetCreated(KnowledgeBaseEvent) - Method in interface edu.stanford.smi.protege.event.KnowledgeBaseListener
facetDeleted(KnowledgeBaseEvent) - Method in class edu.stanford.smi.protege.event.KnowledgeBaseAdapter
facetDeleted(KnowledgeBaseEvent) - Method in interface edu.stanford.smi.protege.event.KnowledgeBaseListener
FacetEvent - Class in edu.stanford.smi.protege.event
  Event generated when a facet changes.
FacetEvent(Facet, int, Frame, Slot) - Constructor for class edu.stanford.smi.protege.event.FacetEvent
FacetEventDispatcher - Class in edu.stanford.smi.protege.event
  Dispatcher to send Facet events to FacetListeners
FacetEventDispatcher() - Constructor for class edu.stanford.smi.protege.event.FacetEventDispatcher
FacetListener - Interface in edu.stanford.smi.protege.event
  Listener interface for facet events
facetName() - Method in class edu.stanford.smi.protege.storage.clips.Parser
facetStatement(Cls, Slot) - Method in class edu.stanford.smi.protege.storage.clips.Parser
FACTORY_CLASS_NAME - Static variable in class edu.stanford.smi.protege.code.generator.wrapping.ProjectBasedJavaCodeGeneratorOptions
FACTORY_CLASS_NAME - Static variable in interface edu.stanford.smi.protege.model.KnowledgeBaseFactory
FactoryRenderer - Class in edu.stanford.smi.protege.ui
  TODO Class Comment
FactoryRenderer() - Constructor for class edu.stanford.smi.protege.ui.FactoryRenderer
fail(String) - Static method in class edu.stanford.smi.protege.util.Assert
FALSE - Static variable in class edu.stanford.smi.protege.storage.clips.ClipsUtil
fatalError(SAXParseException) - Method in class edu.stanford.smi.protege.storage.xml.XMLHandler
fatalError(X) - Method in class edu.stanford.smi.protege.util.DefaultErrorHandler
fatalError(E) - Method in interface edu.stanford.smi.protege.util.ErrorHandler
  Receive notification of an unrecoverable error.
FifoReader<X> - Class in edu.stanford.smi.protege.server.util
FifoReader(FifoWriter<X>) - Constructor for class edu.stanford.smi.protege.server.util.FifoReader
FifoReader(FifoReader<X>) - Constructor for class edu.stanford.smi.protege.server.util.FifoReader
FifoWriter<X> - Class in edu.stanford.smi.protege.server.util
  This is the writer part of a pair of linked classes, the FifoWriter and the FifoReader.
FifoWriter() - Constructor for class edu.stanford.smi.protege.server.util.FifoWriter
FILE_CARD - Static variable in class edu.stanford.smi.protege.util.ProjectChooser
FILE_NAME - Static variable in class edu.stanford.smi.protege.code.generator.wrapping.ProjectBasedJavaCodeGeneratorOptions
FILE_NAME - Static variable in class edu.stanford.smi.protege.util.ApplicationProperties
FileField - Class in edu.stanford.smi.protege.util
  A text field that accepts a file name.
FileField(String, String, String, String) - Constructor for class edu.stanford.smi.protege.util.FileField
  Constructor for selecting a file
FileField(String, String, ExtensionFilter) - Constructor for class edu.stanford.smi.protege.util.FileField
  Constructor for selecting a file with multiple extension filters
FileField(String, String, String) - Constructor for class edu.stanford.smi.protege.util.FileField
  Constructor for selecting a directory
FileFormatter - Class in edu.stanford.smi.protege.util
  TODO Class Comment
FileFormatter() - Constructor for class edu.stanford.smi.protege.util.FileFormatter
FileHandler - Class in edu.stanford.smi.protege.util
FileHandler() - Constructor for class edu.stanford.smi.protege.util.FileHandler
FileList - Class in edu.stanford.smi.protege.util
  A list box that is specialized to work with file names.
FileList(String, Collection, String, String) - Constructor for class edu.stanford.smi.protege.util.FileList
Files - Class in edu.stanford.smi.protege.resource
  Utility class for accessing files in protege jar.
Files() - Constructor for class edu.stanford.smi.protege.resource.Files
FileSourcesPanel - Class in edu.stanford.smi.protege.storage.clips
  Panel which contains the fields needed for the Clips backend.
FileSourcesPanel(String, PropertyList) - Constructor for class edu.stanford.smi.protege.storage.clips.FileSourcesPanel
FileSourcesPanel - Class in edu.stanford.smi.protege.storage.xml
  Panel which contains the fields needed for the XML backend.
FileSourcesPanel(String, PropertyList) - Constructor for class edu.stanford.smi.protege.storage.xml.FileSourcesPanel
FileUtilities - Class in edu.stanford.smi.protege.util
  A utility class for working with files.
FileUtilities() - Constructor for class edu.stanford.smi.protege.util.FileUtilities
FillBuff() - Method in class edu.stanford.smi.protege.storage.clips.SimpleCharStream
fillBuffer(PacketHeader) - Method in class edu.stanford.smi.protege.server.socket.deflate.CompressingInputStream
fillBuffer(PacketHeader) - Method in class edu.stanford.smi.protege.server.socket.deflate.HybridCompressingInputStream
FILLING_HORIZONTALLY - Static variable in class edu.stanford.smi.protege.util.ResizingLayout
FILLING_VERTICALLY - Static variable in class edu.stanford.smi.protege.util.ResizingLayout
filterHiddenRoots(Collection<X>) - Method in class edu.stanford.smi.protege.util.TreeSelectionHelper
findClass(String) - Method in class edu.stanford.smi.protege.util.MultiplexingClassLoader
Finder - Class in edu.stanford.smi.protege.ui
  A generic base class for the "find box" ui feature.
Finder(String) - Constructor for class edu.stanford.smi.protege.ui.Finder
Finder(String, Icon) - Constructor for class edu.stanford.smi.protege.ui.Finder
Finder(ResourceKey) - Constructor for class edu.stanford.smi.protege.ui.Finder
findPluginsDirectory() - Static method in class edu.stanford.smi.protege.plugin.PluginUtilities
findResource(String) - Method in class edu.stanford.smi.protege.util.DirectoryClassLoader
findResource(String) - Method in class edu.stanford.smi.protege.util.MultiplexingClassLoader
findResources(String) - Method in class edu.stanford.smi.protege.util.MultiplexingClassLoader
finishCompleteCache() - Method in class edu.stanford.smi.protege.server.update.DeferredOperationCache
finishCompleteCache() - Method in interface edu.stanford.smi.protege.util.transaction.cache.Cache
  The startCompleteCache and the finishCompleteCache are part of a protocol.
finishCompleteCache() - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.BasicCache
finishCompleteCache() - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.CompleteableCache
finishCompleteCache() - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.InvalidatableCache
finishCompleteCache() - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.ReadCommittedCache
finishCompleteCache() - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.ReadUncommittedCache
finishCompleteCache() - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.RepeatableReadCache
firePropertyChange(String, boolean, boolean) - Method in class edu.stanford.smi.protege.util.DefaultRenderer
firePropertyChange(String, byte, byte) - Method in class edu.stanford.smi.protege.util.DefaultRenderer
firePropertyChange(String, char, char) - Method in class edu.stanford.smi.protege.util.DefaultRenderer
firePropertyChange(String, double, double) - Method in class edu.stanford.smi.protege.util.DefaultRenderer
firePropertyChange(String, float, float) - Method in class edu.stanford.smi.protege.util.DefaultRenderer
firePropertyChange(String, int, int) - Method in class edu.stanford.smi.protege.util.DefaultRenderer
firePropertyChange(String, long, long) - Method in class edu.stanford.smi.protege.util.DefaultRenderer
firePropertyChange(String, short, short) - Method in class edu.stanford.smi.protege.util.DefaultRenderer
firePropertyChange(String, Object, Object) - Method in class edu.stanford.smi.protege.util.DefaultRenderer
fix(KnowledgeBase) - Static method in class edu.stanford.smi.protege.util.Frames1_8_BackwardsCompatibilityProjectFixups
fixLoader() - Method in class edu.stanford.smi.protege.util.ProtegeJob
fixLoader() - Method in class edu.stanford.smi.protege.util.RemoteJob
fixLoader() - Method in class edu.stanford.smi.protege.util.ServerJob
fixMetaProject(MetaProject) - Static method in class edu.stanford.smi.protege.server.util.ServerUtil
  Backwards compatibility check for the metaproject.
fixProject(KnowledgeBase) - Method in interface edu.stanford.smi.protege.plugin.ProjectFixupPlugin
fixProject(KnowledgeBase) - Static method in class edu.stanford.smi.protege.plugin.ProjectFixupsPluginManager
fixProject(KnowledgeBase) - Method in class edu.stanford.smi.protege.util.Frames1_8_BackwardsCompatibilityProjectFixups
FLOAT - Static variable in interface edu.stanford.smi.protege.model.Model.Cls
FLOAT - Static variable in interface edu.stanford.smi.protege.model.Model.ClsID
FLOAT - Static variable in class edu.stanford.smi.protege.model.ValueType
FLOAT - Static variable in interface edu.stanford.smi.protege.storage.clips.ParserConstants
  RegularExpression Id.
FLOAT_TYPE - Static variable in interface edu.stanford.smi.protege.storage.xml.XMLString.AttributeValue
FloatFieldWidget - Class in edu.stanford.smi.protege.widget
  Slot widget for acquiring and displaying a floating point value.
FloatFieldWidget() - Constructor for class edu.stanford.smi.protege.widget.FloatFieldWidget
FloatListWidget - Class in edu.stanford.smi.protege.widget
  Slot widget for acquiring and displaying a list of floating point values.
FloatListWidget() - Constructor for class edu.stanford.smi.protege.widget.FloatListWidget
FloatValidator - Class in edu.stanford.smi.protege.util
  Utility class to check a string to see if it is a valid floating point number
FloatValidator() - Constructor for class edu.stanford.smi.protege.util.FloatValidator
flush() - Method in class edu.stanford.smi.protege.server.socket.deflate.CompressingOutputStream
flush() - Method in class edu.stanford.smi.protege.server.socket.deflate.HybridCompressingOutputStream
flush() - Method in class edu.stanford.smi.protege.server.socket.MonitoringOutputStream
flush() - Method in class edu.stanford.smi.protege.server.socket.TeeOutputStream
flush() - Method in class edu.stanford.smi.protege.server.update.DeferredOperationCache
flush() - Method in class edu.stanford.smi.protege.storage.clips.ClipsFileWriter
flush() - Static method in class edu.stanford.smi.protege.util.ApplicationProperties
flush() - Method in interface edu.stanford.smi.protege.util.transaction.cache.Cache
  Try to avoid this.
flush() - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.BasicCache
flush() - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.CompleteableCache
flush() - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.InvalidatableCache
flush() - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.ReadCommittedCache
flush() - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.ReadUncommittedCache
flush() - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.RepeatableReadCache
flushCache() - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
flushCache() - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
flushCache() - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
flushEvents() - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
flushEvents() - Method in class edu.stanford.smi.protege.model.framestore.EventDispatchFrameStore
flushEvents() - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreManager
flushEvents() - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
FontAction - Class in edu.stanford.smi.protege.action
  Base class for any action to change the application font sizes.
FontAction(ResourceKey) - Constructor for class edu.stanford.smi.protege.action.FontAction
FORM_BROWSER_FORMS_LABEL - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
FORM_BROWSER_TITLE - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
FORM_CHANGED - Static variable in class edu.stanford.smi.protege.event.ProjectEvent
FORM_EDITOR_DISPLAY_SLOT_LABEL - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
FORM_EDITOR_SELECT_A_WIDGET_PROMPT - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
FORM_EDITOR_SELECT_NO_WIDGET - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
FORM_EDITOR_SELECTED_WIDGET_TYPE_LABEL - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
FORM_EDITOR_TITLE - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
FORM_LAYOUT_LIKE - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
FORM_RELAYOUT - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
FORM_REMOVE_CUSTOMIZATIONS - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
FORM_SEARCH_FOR - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
FORM_VIEW_CUSTOMIZATIONS - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
format(LogRecord) - Method in class edu.stanford.smi.protege.model.framestore.JournalFormater
format(LogRecord, String, boolean, boolean) - Method in class edu.stanford.smi.protege.util.AbstractFormatter
format(LogRecord, String, boolean, boolean, boolean, boolean) - Method in class edu.stanford.smi.protege.util.AbstractFormatter
format(LogRecord) - Method in class edu.stanford.smi.protege.util.ConsoleFormatter
format(LogRecord) - Method in class edu.stanford.smi.protege.util.FileFormatter
formChanged(ProjectEvent) - Method in class edu.stanford.smi.protege.event.ProjectAdapter
formChanged(ProjectEvent) - Method in interface edu.stanford.smi.protege.event.ProjectListener
FormDisplay - Class in edu.stanford.smi.protege.ui
  A panel that holds a design time class form and allows the user to set the browser text and change slot widgets.
FormDisplay(Project) - Constructor for class edu.stanford.smi.protege.ui.FormDisplay
FormParentChildNode - Class in edu.stanford.smi.protege.ui
  TreeNode to hold the parent form - child form relationship.
FormParentChildNode(LazyTreeNode, Cls) - Constructor for class edu.stanford.smi.protege.ui.FormParentChildNode
FormParentChildRoot - Class in edu.stanford.smi.protege.ui
  Root for a set to nodes to hold the parent form - child form relationship.
FormParentChildRoot(Cls) - Constructor for class edu.stanford.smi.protege.ui.FormParentChildRoot
FormParentChildRoot(Collection) - Constructor for class edu.stanford.smi.protege.ui.FormParentChildRoot
FormRenderer - Class in edu.stanford.smi.protege.ui
  Renderer for nodes on the "form tree".
FormRenderer(Project) - Constructor for class edu.stanford.smi.protege.ui.FormRenderer
FORMS_VIEW_TITLE - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
FormsPanel - Class in edu.stanford.smi.protege.ui
  The panel that holds the "forms hierarchy" on the Forms tab.
FormsPanel(Project) - Constructor for class edu.stanford.smi.protege.ui.FormsPanel
FormsTab - Class in edu.stanford.smi.protege.widget
  Tab to display class forms and allow the user to edit the forms.
FormsTab() - Constructor for class edu.stanford.smi.protege.widget.FormsTab
FormWidget - Class in edu.stanford.smi.protege.widget
  The default implementation of ClsWidget.
FormWidget() - Constructor for class edu.stanford.smi.protege.widget.FormWidget
FormWidgetConfigurationLayoutTab - Class in edu.stanford.smi.protege.widget
  Layout configuration panel for a FormWidget.
FormWidgetConfigurationLayoutTab(FormWidget) - Constructor for class edu.stanford.smi.protege.widget.FormWidgetConfigurationLayoutTab
FormWidgetConfigurationPanel - Class in edu.stanford.smi.protege.widget
  Configuration panel for a form widget.
FormWidgetConfigurationPanel(FormWidget) - Constructor for class edu.stanford.smi.protege.widget.FormWidgetConfigurationPanel
FormWidgetConfigurationWidgetsTab - Class in edu.stanford.smi.protege.widget
  Tab for configuring which slots appear on a form widget.
FormWidgetConfigurationWidgetsTab(FormWidget) - Constructor for class edu.stanford.smi.protege.widget.FormWidgetConfigurationWidgetsTab
forName(String) - Static method in class edu.stanford.smi.protege.plugin.PluginUtilities
forName(String, boolean) - Static method in class edu.stanford.smi.protege.plugin.PluginUtilities
  Load a class with the given name.
forName(String) - Static method in class edu.stanford.smi.protege.util.SystemUtilities
forName(String, boolean) - Static method in class edu.stanford.smi.protege.util.SystemUtilities
Frame - Interface in edu.stanford.smi.protege.model
  A container for slot and facet values.
frame - Variable in class edu.stanford.smi.protege.util.GetOwnSlotValuesBrowserTextJob
FRAME_EDITOR_FRAME_NAME - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
FRAME_EDITOR_FRAME_TYPE - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
FRAME_EDITOR_FRAME_TYPE_AND_NAME - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
FRAME_NAME_CHANGED - Static variable in class edu.stanford.smi.protege.event.KnowledgeBaseEvent
  Deprecated.
FRAME_REPLACED - Static variable in class edu.stanford.smi.protege.event.KnowledgeBaseEvent
FRAME_SLOT_REFERENCE_ADDED - Static variable in class edu.stanford.smi.protege.event.FacetEvent
FRAME_SLOT_REFERENCE_REMOVED - Static variable in class edu.stanford.smi.protege.event.FacetEvent
FrameAdapter - Class in edu.stanford.smi.protege.event
  Adapter for frame listeners.
FrameAdapter() - Constructor for class edu.stanford.smi.protege.event.FrameAdapter
FrameCalculator - Class in edu.stanford.smi.protege.server.framestore.background
  This class is a thread that precalculates frames needed by a client.
FrameCalculator(FrameStore, ServerCacheStateMachine, Object, ServerFrameStore, Map<RemoteSession, Registration>) - Constructor for class edu.stanford.smi.protege.server.framestore.background.FrameCalculator
FrameCalculator.FrameCalculatorStatsImpl - Class in edu.stanford.smi.protege.server.framestore.background
FrameCalculator.FrameCalculatorStatsImpl() - Constructor for class edu.stanford.smi.protege.server.framestore.background.FrameCalculator.FrameCalculatorStatsImpl
FrameCalculatorFrameStore - Class in edu.stanford.smi.protege.server.framestore
  This class informs the frame calculator of items that the client may want cached during normal knowledge base operations.
FrameCalculatorFrameStore(FrameCalculator) - Constructor for class edu.stanford.smi.protege.server.framestore.FrameCalculatorFrameStore
FrameCalculatorStats - Interface in edu.stanford.smi.protege.server.framestore.background
FrameComparator<X extends Frame> - Class in edu.stanford.smi.protege.ui
  Comparator for frames.
FrameComparator() - Constructor for class edu.stanford.smi.protege.ui.FrameComparator
FrameCounts - Interface in edu.stanford.smi.protege.model
FrameCountsImpl - Class in edu.stanford.smi.protege.model
FrameCountsImpl() - Constructor for class edu.stanford.smi.protege.model.FrameCountsImpl
FrameEvent - Class in edu.stanford.smi.protege.event
  Event generated when a frame changes.
FrameEvent(Frame, int) - Constructor for class edu.stanford.smi.protege.event.FrameEvent
FrameEvent(Frame, int, Object) - Constructor for class edu.stanford.smi.protege.event.FrameEvent
FrameEvent(Frame, int, Object, Object) - Constructor for class edu.stanford.smi.protege.event.FrameEvent
FrameFactory - Interface in edu.stanford.smi.protege.model
FrameHolder - Class in edu.stanford.smi.protege.storage.database
FrameHolder(FrameFactory) - Constructor for class edu.stanford.smi.protege.storage.database.FrameHolder
FrameID - Class in edu.stanford.smi.protege.model
FrameID(String) - Constructor for class edu.stanford.smi.protege.model.FrameID
FrameListener - Interface in edu.stanford.smi.protege.event
  Listener interface for frame events.
frameNameChanged(KnowledgeBaseEvent) - Method in class edu.stanford.smi.protege.event.KnowledgeBaseAdapter
  Deprecated.
frameNameChanged(KnowledgeBaseEvent) - Method in interface edu.stanford.smi.protege.event.KnowledgeBaseListener
  This method should be called frameReplaced().
FrameNameComparator - Class in edu.stanford.smi.protege.ui
  A comparator for frames that only does a case insensitive comparison of the frame names.
FrameNameComparator() - Constructor for class edu.stanford.smi.protege.ui.FrameNameComparator
FrameNameValidator - Interface in edu.stanford.smi.protege.model
FrameRenderer - Class in edu.stanford.smi.protege.ui
  Renderer for frames.
FrameRenderer() - Constructor for class edu.stanford.smi.protege.ui.FrameRenderer
FrameRenderer.InstanceCountType - Enum in edu.stanford.smi.protege.ui
frameReplaced(FrameEvent) - Method in class edu.stanford.smi.protege.event.FrameAdapter
frameReplaced(KnowledgeBaseEvent) - Method in class edu.stanford.smi.protege.event.KnowledgeBaseAdapter
Frames1_8_BackwardsCompatibilityProjectFixups - Class in edu.stanford.smi.protege.util
  Fix backwards compatibility problems in the .pprj files.
Frames1_8_BackwardsCompatibilityProjectFixups() - Constructor for class edu.stanford.smi.protege.util.Frames1_8_BackwardsCompatibilityProjectFixups
FrameSlotCombination - Class in edu.stanford.smi.protege.model
  A holder for a frame-slot pair.
FrameSlotCombination(Frame, Slot) - Constructor for class edu.stanford.smi.protege.model.FrameSlotCombination
FrameSlotPairComparator - Class in edu.stanford.smi.protege.ui
  Comparator for the "frame slot pairs" that are displayed in the template slot window.
FrameSlotPairComparator() - Constructor for class edu.stanford.smi.protege.ui.FrameSlotPairComparator
frameSlotReferenceAdded(FacetEvent) - Method in interface edu.stanford.smi.protege.event.FacetListener
frameSlotReferenceRemoved(FacetEvent) - Method in interface edu.stanford.smi.protege.event.FacetListener
FrameStore - Interface in edu.stanford.smi.protege.model.framestore
FrameStoreAdapter - Class in edu.stanford.smi.protege.model.framestore
FrameStoreAdapter() - Constructor for class edu.stanford.smi.protege.model.framestore.FrameStoreAdapter
FrameStoreManager - Class in edu.stanford.smi.protege.model.framestore
FrameStoreManager(KnowledgeBase) - Constructor for class edu.stanford.smi.protege.model.framestore.FrameStoreManager
FrameStoreMethodInvoker - Class in edu.stanford.smi.protege.model.framestore
FrameStoreMethodInvoker() - Constructor for class edu.stanford.smi.protege.model.framestore.FrameStoreMethodInvoker
FrameTreeFinder - Class in edu.stanford.smi.protege.ui
FrameTreeFinder(KnowledgeBase, JTree, ResourceKey) - Constructor for class edu.stanford.smi.protege.ui.FrameTreeFinder
FrameTreeFinder(KnowledgeBase, JTree, String) - Constructor for class edu.stanford.smi.protege.ui.FrameTreeFinder
FrameTreeFinder(KnowledgeBase, JTree, String, Icon) - Constructor for class edu.stanford.smi.protege.ui.FrameTreeFinder
FrameWithBrowserText - Class in edu.stanford.smi.protege.util
FrameWithBrowserText(Frame) - Constructor for class edu.stanford.smi.protege.util.FrameWithBrowserText
FrameWithBrowserText(Frame, String) - Constructor for class edu.stanford.smi.protege.util.FrameWithBrowserText
FrameWithBrowserText(Frame, String, Collection<Cls>) - Constructor for class edu.stanford.smi.protege.util.FrameWithBrowserText
FrameWithBrowserText(Frame, String, Collection<Cls>, String) - Constructor for class edu.stanford.smi.protege.util.FrameWithBrowserText
FrameWithBrowserTextComparator - Class in edu.stanford.smi.protege.util
FrameWithBrowserTextComparator() - Constructor for class edu.stanford.smi.protege.util.FrameWithBrowserTextComparator
FrameWithBrowserTextRenderer - Class in edu.stanford.smi.protege.ui
FrameWithBrowserTextRenderer() - Constructor for class edu.stanford.smi.protege.ui.FrameWithBrowserTextRenderer
FROM - Static variable in interface edu.stanford.smi.protege.model.Model.Slot
FROM - Static variable in interface edu.stanford.smi.protege.model.Model.SlotID
fullSelectionCollapse(JTree) - Static method in class edu.stanford.smi.protege.util.ComponentUtilities
fullSelectionExpand(JTree, int) - Static method in class edu.stanford.smi.protege.util.ComponentUtilities

## G

gc() - Static method in class edu.stanford.smi.protege.util.SystemUtilities
GeneralPreferencesPanel - Class in edu.stanford.smi.protege.ui
  TODO Class Comment
GeneralPreferencesPanel() - Constructor for class edu.stanford.smi.protege.ui.GeneralPreferencesPanel
GeneralWidgetConfigurationPanel - Class in edu.stanford.smi.protege.widget
  The "general" panel on the slot widget configuration dialog.
GeneralWidgetConfigurationPanel(SlotWidget) - Constructor for class edu.stanford.smi.protege.widget.GeneralWidgetConfigurationPanel
GENERATE_HTML_OPTIONS_DIALOG_TITLE - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
generateDigestAndSalt(String) - Method in class edu.stanford.smi.protege.widget.DigestedPasswordWidget
generateParseException() - Method in class edu.stanford.smi.protege.storage.clips.Parser
  Generate ParseException.
generateUniqueName(String) - Method in class edu.stanford.smi.protege.model.framestore.ImmutableNamesFrameStore
get(KnowledgeBase) - Static method in class edu.stanford.smi.protege.model.framestore.MergingNarrowFrameStore
  A utility hack to get the merging frame store from a kb until I can decide what sort of "real" API access to provide.
get(int) - Method in class edu.stanford.smi.protege.util.HashList
  Deprecated. Returns the element at the specified position in this list.
get(Object) - Method in class edu.stanford.smi.protege.util.SuperclassTraverser
get(Object) - Method in class edu.stanford.smi.protege.util.SuperslotTraverser
get(Object) - Method in interface edu.stanford.smi.protege.util.Traverser
getAboutURL() - Static method in class edu.stanford.smi.protege.resource.Text
getAbsoluteDirectory() - Method in class edu.stanford.smi.protege.util.PathSplitter
getAbsolutePath(String) - Static method in class edu.stanford.smi.protege.util.FileUtilities
getAbsolutePath(String, Project) - Static method in class edu.stanford.smi.protege.util.FileUtilities
getAbsoluteURI() - Method in class edu.stanford.smi.protege.util.URIField
getAbstractMode() - Method in class edu.stanford.smi.protege.code.generator.wrapping.ProjectBasedJavaCodeGeneratorOptions
getActiveFrameStore() - Method in class edu.stanford.smi.protege.model.framestore.MergingNarrowFrameStore
getActiveRootURI() - Method in class edu.stanford.smi.protege.model.Project
getAddAction() - Method in class edu.stanford.smi.protege.widget.ProtegePropertiesComponent
getAddClsesAction() - Method in class edu.stanford.smi.protege.widget.ClsListWidget
getAddClsIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getAddIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getAddInstanceIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getAddInstancesAction() - Method in class edu.stanford.smi.protege.widget.InstanceListWidget
getAddNameOnInstanceForm() - Method in class edu.stanford.smi.protege.model.Project
getAddQueryLibraryIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getAddSlotIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getAddSlotsAction() - Method in class edu.stanford.smi.protege.widget.TemplateSlotsWidget
getAlignBorder() - Static method in class edu.stanford.smi.protege.util.ComponentUtilities
getAllFrameStores() - Method in class edu.stanford.smi.protege.model.framestore.MergingNarrowFrameStore
getAllHelpURLString() - Static method in class edu.stanford.smi.protege.util.ApplicationProperties
getAllKnowledgeBaseFactories() - Method in class edu.stanford.smi.protege.model.Project
getAllowedClses(Slot) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getAllowedClses() - Method in class edu.stanford.smi.protege.model.DefaultSlot
getAllowedClses(Slot) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getAllowedClses() - Method in interface edu.stanford.smi.protege.model.Slot
getAllowedClses(Collection) - Static method in class edu.stanford.smi.protege.model.ValueTypeConstraint
getAllowedGroup() - Method in interface edu.stanford.smi.protege.server.metaproject.GroupOperation
getAllowedGroup() - Method in class edu.stanford.smi.protege.server.metaproject.impl.GroupOperationImpl
getAllowedGroupOperations() - Method in class edu.stanford.smi.protege.server.metaproject.impl.PolicyControlledObjectImpl
getAllowedGroupOperations() - Method in interface edu.stanford.smi.protege.server.metaproject.PolicyControlledObject
getAllowedOperations() - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
getAllowedOperations(RemoteSession) - Method in interface edu.stanford.smi.protege.server.framestore.RemoteServerFrameStore
getAllowedOperations(RemoteSession) - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
getAllowedOperations() - Method in interface edu.stanford.smi.protege.server.metaproject.GroupOperation
getAllowedOperations() - Method in class edu.stanford.smi.protege.server.metaproject.impl.GroupOperationImpl
getAllowedOperations(User, ProjectInstance) - Method in class edu.stanford.smi.protege.server.metaproject.impl.PolicyImpl
getAllowedOperations(User, ProjectInstance) - Method in interface edu.stanford.smi.protege.server.metaproject.Policy
getAllowedOperations(RemoteSession, String, String) - Method in interface edu.stanford.smi.protege.server.RemoteServer
getAllowedOperations(RemoteSession, String, String) - Method in class edu.stanford.smi.protege.server.Server
getAllowedParents(Slot) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getAllowedParents() - Method in class edu.stanford.smi.protege.model.DefaultSlot
getAllowedParents(Slot) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getAllowedParents() - Method in interface edu.stanford.smi.protege.model.Slot
  Returns the classes which restrict the values that this slot can take.
getAllowedParents(Collection) - Static method in class edu.stanford.smi.protege.model.ValueTypeConstraint
getAllowedValues(Slot) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getAllowedValues() - Method in class edu.stanford.smi.protege.model.DefaultSlot
getAllowedValues(Slot) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getAllowedValues() - Method in interface edu.stanford.smi.protege.model.Slot
getAllowedValues(Collection) - Static method in class edu.stanford.smi.protege.model.ValueTypeConstraint
getAllowsChildren() - Method in class edu.stanford.smi.protege.util.LazyTreeNode
getAllowsCreateUsers() - Static method in class edu.stanford.smi.protege.server.ServerProperties
getAllowsMultipleValues() - Method in class edu.stanford.smi.protege.model.DefaultFacet
getAllowsMultipleValues(Slot) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getAllowsMultipleValues() - Method in class edu.stanford.smi.protege.model.DefaultSlot
getAllowsMultipleValues() - Method in interface edu.stanford.smi.protege.model.Facet
getAllowsMultipleValues(Slot) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getAllowsMultipleValues() - Method in interface edu.stanford.smi.protege.model.Slot
getAllProjectNames() - Method in class edu.stanford.smi.protege.server.Server
getAncestors(Frame) - Method in class edu.stanford.smi.protege.ui.ClsTreeFinder
getAncestors(Frame) - Method in class edu.stanford.smi.protege.ui.FrameTreeFinder
getAncestors(Frame) - Method in class edu.stanford.smi.protege.ui.SlotsTreeFinder
getAndClearValueUpdates() - Method in class edu.stanford.smi.protege.server.framestore.Registration
getAnnotatedInstanceSlot() - Method in class edu.stanford.smi.protege.model.SystemFrames
getAnnotationCls() - Method in class edu.stanford.smi.protege.model.SystemFrames
getAnnotationProject() - Method in class edu.stanford.smi.protege.server.metaproject.impl.ProjectInstanceImpl
getAnnotationProject() - Method in interface edu.stanford.smi.protege.server.metaproject.ProjectInstance
getAnnotationTextSlot() - Method in class edu.stanford.smi.protege.model.SystemFrames
getApplicationDirectory() - Static method in class edu.stanford.smi.protege.util.ApplicationProperties
getApplicationOrSystemProperty(String) - Static method in class edu.stanford.smi.protege.util.ApplicationProperties
getApplicationOrSystemProperty(String, String) - Static method in class edu.stanford.smi.protege.util.ApplicationProperties
getApplicationProperties() - Static method in class edu.stanford.smi.protege.util.ApplicationProperties
getApplyTo(String) - Static method in class edu.stanford.smi.protege.model.Transaction
getArchiveManager() - Static method in class edu.stanford.smi.protege.util.ArchiveManager
getArchiveProjectIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getArchiveProjectIcon(boolean, boolean) - Static method in class edu.stanford.smi.protege.resource.Icons
getArchiveRecords(Project) - Method in class edu.stanford.smi.protege.util.ArchiveManager
getArgument() - Method in class edu.stanford.smi.protege.util.AbstractEvent
getArgument1() - Method in class edu.stanford.smi.protege.util.AbstractEvent
getArgument2() - Method in class edu.stanford.smi.protege.util.AbstractEvent
getArgument3() - Method in class edu.stanford.smi.protege.util.AbstractEvent
getAssociatedCls() - Method in class edu.stanford.smi.protege.widget.AbstractClsWidget
getAssociatedCls() - Method in class edu.stanford.smi.protege.widget.AbstractSlotWidget
getAssociatedCls() - Method in interface edu.stanford.smi.protege.widget.ClsWidget
getAssociatedCls() - Method in interface edu.stanford.smi.protege.widget.SlotWidget
getAssociatedFacet(Slot) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getAssociatedFacet() - Method in class edu.stanford.smi.protege.model.DefaultSlot
getAssociatedFacet(Slot) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getAssociatedFacet() - Method in interface edu.stanford.smi.protege.model.Slot
getAssociatedFacetSlot() - Method in class edu.stanford.smi.protege.model.SystemFrames
getAssociatedSlot() - Method in class edu.stanford.smi.protege.model.DefaultFacet
getAssociatedSlot(Facet) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getAssociatedSlot() - Method in interface edu.stanford.smi.protege.model.Facet
getAssociatedSlot(Facet) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getAssociatedSlotSlot() - Method in class edu.stanford.smi.protege.model.SystemFrames
getAutoscrollInsets() - Method in class edu.stanford.smi.protege.util.SelectableTree
getAvailableCreateProjectFromFilePluginClassNames() - Static method in class edu.stanford.smi.protege.plugin.PluginUtilities
getAvailableCreateProjectPluginClassNames() - Static method in class edu.stanford.smi.protege.plugin.PluginUtilities
getAvailableExportPluginClassNames() - Static method in class edu.stanford.smi.protege.plugin.PluginUtilities
getAvailableExportProjectPluginClassNames() - Static method in class edu.stanford.smi.protege.plugin.PluginUtilities
getAvailableFactories() - Static method in class edu.stanford.smi.protege.plugin.PluginUtilities
getAvailableFactoryClassNames() - Static method in class edu.stanford.smi.protege.plugin.PluginUtilities
getAvailableFrameStores() - Method in class edu.stanford.smi.protege.model.framestore.MergingNarrowFrameStore
getAvailableImportPluginClassNames() - Static method in class edu.stanford.smi.protege.plugin.PluginUtilities
getAvailableProjectFixupPluginClasses() - Static method in class edu.stanford.smi.protege.plugin.ProjectFixupsPluginManager
getAvailableProjectFixupPlugins() - Static method in class edu.stanford.smi.protege.plugin.ProjectFixupsPluginManager
getAvailableProjectInfo(RemoteSession) - Method in interface edu.stanford.smi.protege.server.RemoteServer
getAvailableProjectInfo(RemoteSession) - Method in class edu.stanford.smi.protege.server.Server
getAvailableProjectNames(RemoteSession) - Method in interface edu.stanford.smi.protege.server.RemoteServer
getAvailableProjectNames(RemoteSession) - Method in class edu.stanford.smi.protege.server.Server
getAvailableProjectPluginClassNames() - Static method in class edu.stanford.smi.protege.plugin.PluginUtilities
getAvailableSlotWidgetClassNames() - Static method in class edu.stanford.smi.protege.plugin.PluginUtilities
getAvailableTabWidgetClassNames() - Static method in class edu.stanford.smi.protege.plugin.PluginUtilities
getBackgroundColor() - Method in class edu.stanford.smi.protege.util.DefaultRenderer
getBackgroundSelectionColor() - Method in class edu.stanford.smi.protege.util.DefaultRenderer
getBackIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getBandWidthPolicy() - Method in class edu.stanford.smi.protege.server.framestore.Registration
getBaseFile(FileField) - Method in class edu.stanford.smi.protege.model.KnowledgeBaseSourcesEditor
getBaseImplementation(Cls) - Method in class edu.stanford.smi.protege.code.generator.wrapping.JavaCodeGenerator
getBaseInterface(Cls) - Method in class edu.stanford.smi.protege.code.generator.wrapping.JavaCodeGenerator
getBaseName(String) - Static method in class edu.stanford.smi.protege.util.FileUtilities
getBaseName(File) - Static method in class edu.stanford.smi.protege.util.FileUtilities
getBaseName(URI) - Static method in class edu.stanford.smi.protege.util.URIUtilities
getBaseSlotMetaCls() - Method in class edu.stanford.smi.protege.widget.TemplateSlotsWidget
getBeginColumn() - Method in class edu.stanford.smi.protege.storage.clips.SimpleCharStream
  Get token beginning column number.
getBeginLine() - Method in class edu.stanford.smi.protege.storage.clips.SimpleCharStream
  Get token beginning line number.
getBeginString() - Method in class edu.stanford.smi.protege.event.TransactionEvent
getBestMatch(List, String) - Method in class edu.stanford.smi.protege.ui.Finder
getBestMatch(List, String) - Method in class edu.stanford.smi.protege.ui.FrameTreeFinder
getBestMatch(List, String) - Method in class edu.stanford.smi.protege.ui.ListFinder
getBitType() - Method in enum edu.stanford.smi.protege.storage.database.KnownDatabase
getBitTypeName() - Method in class edu.stanford.smi.protege.storage.database.RobustConnection
getBlankIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getBoolean(String) - Method in class edu.stanford.smi.protege.util.PropertyList
getBooleanProperty(String, boolean) - Static method in class edu.stanford.smi.protege.util.ApplicationProperties
getBoundName() - Static method in class edu.stanford.smi.protege.server.Server
getBounds() - Method in class edu.stanford.smi.protege.model.WidgetDescriptor
getBrowser() - Static method in class edu.stanford.smi.protege.util.ApplicationProperties
getBrowserSlot() - Method in interface edu.stanford.smi.protege.model.Cls
  Deprecated.
getBrowserSlot() - Method in class edu.stanford.smi.protege.model.DefaultCls
  Deprecated.
getBrowserSlot(Cls) - Method in class edu.stanford.smi.protege.model.Project
  Deprecated.
getBrowserSlot(KnowledgeBase) - Method in class edu.stanford.smi.protege.ui.ClsTreeFinder
getBrowserSlot(KnowledgeBase) - Method in class edu.stanford.smi.protege.ui.FrameTreeFinder
getBrowserSlot(KnowledgeBase) - Method in class edu.stanford.smi.protege.ui.SlotsTreeFinder
getBrowserSlotPattern() - Method in interface edu.stanford.smi.protege.model.Cls
getBrowserSlotPattern() - Method in class edu.stanford.smi.protege.model.DefaultCls
getBrowserSlotPattern(Cls) - Method in class edu.stanford.smi.protege.model.Project
getBrowserSlots(Cls) - Method in class edu.stanford.smi.protege.model.Project
getBrowserText(Instance) - Method in class edu.stanford.smi.protege.model.BrowserSlotPattern
getBrowserText() - Method in class edu.stanford.smi.protege.model.DefaultInstance
getBrowserText(Instance) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getBrowserText() - Method in interface edu.stanford.smi.protege.model.Frame
getBrowserText(Instance) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getBrowserText() - Method in class edu.stanford.smi.protege.util.FrameWithBrowserText
getBrowserTextPattern() - Method in class edu.stanford.smi.protege.ui.MultiSlotPanel
getBuildInfo() - Static method in class edu.stanford.smi.protege.resource.Text
getBuildNumber() - Static method in class edu.stanford.smi.protege.resource.Text
getBuildProjectURI() - Method in class edu.stanford.smi.protege.plugin.AbstractCreateProjectPlugin
getBuildProjectURI() - Method in class edu.stanford.smi.protege.storage.clips.ClipsFilesCreateProjectPlugin
getBuildString() - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getBuildString() - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
  Returns a string that contains something like "build 840" that refers to the build of Protege in use when this kb was last saved.
getButtonDescription(Action) - Method in class edu.stanford.smi.protege.widget.AbstractSlotWidget
getCacheHits() - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore.RemoteClientStatsImpl
getCacheHits() - Method in interface edu.stanford.smi.protege.server.framestore.RemoteClientStats
getCacheId() - Method in class edu.stanford.smi.protege.server.update.DeferredOperationCache
getCacheId() - Method in interface edu.stanford.smi.protege.util.transaction.cache.Cache
  This method returns a unique id for each cache.
getCacheId() - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.BasicCache
getCacheId() - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.CompleteableCache
getCacheId() - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.InvalidatableCache
getCacheId() - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.ReadCommittedCache
getCacheId() - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.ReadUncommittedCache
getCacheId() - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.RepeatableReadCache
getCacheMachine() - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getCacheMisses() - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore.RemoteClientStatsImpl
getCacheMisses() - Method in interface edu.stanford.smi.protege.server.framestore.RemoteClientStats
getCacheOwnFacetValues(Frame, Slot, Facet) - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
getCacheOwnSlotValues(Frame, Slot) - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
getCancelIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getCap() - Static method in class edu.stanford.smi.protege.server.framestore.BandWidthPolicy
getCascadeWindowsIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getCascadeWindowsIcon(boolean, boolean) - Static method in class edu.stanford.smi.protege.resource.Icons
getCenterComponent() - Method in class edu.stanford.smi.protege.server.admin.AbstractRefreshableServerPanel
getCenterComponent() - Method in class edu.stanford.smi.protege.util.LabeledComponent
getChangeSlotMetaclassAction(Slot) - Method in class edu.stanford.smi.protege.ui.SubslotPane
getChangeSubslotSlotMetaclassAction(Slot) - Method in class edu.stanford.smi.protege.ui.SubslotPane
getChangeTrackingActive() - Method in class edu.stanford.smi.protege.model.Project
getChar(ResourceKey) - Method in class edu.stanford.smi.protege.resource.BundleHelper
getCheckBox() - Method in class edu.stanford.smi.protege.widget.CheckBoxWidget
getChildAt(int) - Method in class edu.stanford.smi.protege.util.LazyTreeNode
getChildCount() - Method in class edu.stanford.smi.protege.util.LazyTreeNode
getChildNode(LazyTreeNode, Object) - Static method in class edu.stanford.smi.protege.util.ComponentUtilities
getChildObjectCount() - Method in class edu.stanford.smi.protege.ui.ClsClsReferenceNode
getChildObjectCount() - Method in class edu.stanford.smi.protege.ui.ParentChildNode
getChildObjectCount() - Method in class edu.stanford.smi.protege.ui.ReferenceNode
getChildObjectCount() - Method in class edu.stanford.smi.protege.ui.SlotSubslotNode
getChildObjectCount() - Method in class edu.stanford.smi.protege.util.LazyTreeNode
getChildObjectCount() - Method in class edu.stanford.smi.protege.util.LazyTreeRoot
getChildObjects() - Method in class edu.stanford.smi.protege.ui.ClsClsReferenceNode
getChildObjects() - Method in class edu.stanford.smi.protege.ui.ParentChildNode
getChildObjects() - Method in class edu.stanford.smi.protege.ui.ReferenceNode
getChildObjects() - Method in class edu.stanford.smi.protege.ui.SlotSubslotNode
getChildObjects() - Method in class edu.stanford.smi.protege.util.LazyTreeNode
getChildObjects() - Method in class edu.stanford.smi.protege.util.LazyTreeRoot
getChildren(X) - Method in class edu.stanford.smi.protege.util.Tree
getClassAnnotation(Class<?>) - Method in class edu.stanford.smi.protege.server.ProtegeRmiClassLoaderSpi
getClassesWithAttribute(String, String) - Static method in class edu.stanford.smi.protege.plugin.PluginUtilities
  Does a search of the available manifests entries for the specified attribute key and does a case insensitive match on the specified attribute value.
getClassesWithAttribute(String, String) - Static method in class edu.stanford.smi.protege.util.SystemUtilities
getClassLoader(String) - Method in class edu.stanford.smi.protege.server.ProtegeRmiClassLoaderSpi
getClassName(Class) - Static method in class edu.stanford.smi.protege.util.StringUtilities
getClassName(Object) - Static method in class edu.stanford.smi.protege.util.StringUtilities
getClearIcon(boolean, boolean) - Static method in class edu.stanford.smi.protege.resource.Icons
getClient() - Method in class edu.stanford.smi.protege.server.framestore.background.WorkInfo
getClientAndFrame() - Method in class edu.stanford.smi.protege.server.framestore.background.WorkInfo
getClientInformation(Object) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getClientInformation(Object) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
  Allows a programmer to hang arbitrary information on a kb and retrieve it later.
getClientInformation(Object) - Method in class edu.stanford.smi.protege.model.Project
  Returns previously stored "arbitrary" client information.
getClientStats() - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
getCloseAction(Component) - Static method in class edu.stanford.smi.protege.util.ModalDialog
getCloseAllWindowsIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getCloseAllWindowsIcon(boolean, boolean) - Static method in class edu.stanford.smi.protege.resource.Icons
getCloseButtonPanel(JFrame) - Static method in class edu.stanford.smi.protege.util.ComponentFactory
getCloseIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getClosure(Frame, Slot, Facet, boolean) - Method in class edu.stanford.smi.protege.model.framestore.ClosureCachingBasicFrameStore
getClosure(Frame, Slot, Facet, boolean) - Method in class edu.stanford.smi.protege.model.framestore.ImmutableNamesNarrowFrameStore
getClosure(Frame, Slot, Facet, boolean) - Method in class edu.stanford.smi.protege.model.framestore.InMemoryFrameDb
getClosure(Frame, Slot, Facet, boolean) - Method in class edu.stanford.smi.protege.model.framestore.MergingNarrowFrameStore
getClosure(Frame, Slot, Facet, boolean) - Method in interface edu.stanford.smi.protege.model.framestore.NarrowFrameStore
getClosure(Frame, Slot, Facet, boolean) - Method in class edu.stanford.smi.protege.model.framestore.PlaceHolderNarrowFrameStore
getClosure(Frame, Slot, Facet, boolean, RemoteSession) - Method in interface edu.stanford.smi.protege.server.narrowframestore.RemoteServerNarrowFrameStore
getClosure(Frame, Slot, Facet, boolean, RemoteSession) - Method in class edu.stanford.smi.protege.server.narrowframestore.ServerNarrowFrameStore
getClosure(Frame, Slot, Facet, boolean) - Method in class edu.stanford.smi.protege.storage.database.DefaultDatabaseFrameDb
getClosure(Frame, Slot, Facet, boolean) - Method in class edu.stanford.smi.protege.storage.database.IdleConnectionNarrowFrameStore
getClosure(Frame, Slot, Facet, boolean) - Method in class edu.stanford.smi.protege.storage.database.ValueCachingNarrowFrameStore
getClosureCacheHits() - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore.RemoteClientStatsImpl
getClosureCacheHits() - Method in interface edu.stanford.smi.protege.server.framestore.RemoteClientStats
getClosureCacheMisses() - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore.RemoteClientStatsImpl
getClosureCacheMisses() - Method in interface edu.stanford.smi.protege.server.framestore.RemoteClientStats
getCls() - Method in class edu.stanford.smi.protege.code.generator.wrapping.SlotAtClassCode
getCls() - Method in class edu.stanford.smi.protege.event.ClsEvent
getCls() - Method in class edu.stanford.smi.protege.event.InstanceEvent
getCls() - Method in class edu.stanford.smi.protege.event.KnowledgeBaseEvent
getCls() - Method in class edu.stanford.smi.protege.event.ProjectEvent
getCls() - Method in class edu.stanford.smi.protege.event.SlotEvent
getCls(String) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getCls() - Method in class edu.stanford.smi.protege.model.framestore.undo.DeleteClsCommand
getCls(String) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getCls(MetaProjectImpl.ClsEnum) - Method in class edu.stanford.smi.protege.server.metaproject.impl.MetaProjectImpl
getCls() - Method in class edu.stanford.smi.protege.server.metaproject.impl.WrappedProtegeInstanceImpl
getCls() - Method in class edu.stanford.smi.protege.ui.ParentChildNode
getCls() - Method in class edu.stanford.smi.protege.widget.AbstractClsWidget
getCls() - Method in class edu.stanford.smi.protege.widget.AbstractSlotWidget
getCls() - Method in interface edu.stanford.smi.protege.widget.ClsWidget
getCls() - Method in interface edu.stanford.smi.protege.widget.SlotWidget
getClsAndInstanceIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getClsColor() - Static method in class edu.stanford.smi.protege.resource.Colors
getClsCount() - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getClsCount() - Method in class edu.stanford.smi.protege.model.framestore.ArgumentCheckingFrameStore
getClsCount() - Method in class edu.stanford.smi.protege.model.framestore.ClosureCachingBasicFrameStore
getClsCount() - Method in interface edu.stanford.smi.protege.model.framestore.FrameStore
getClsCount() - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreAdapter
getClsCount() - Method in class edu.stanford.smi.protege.model.framestore.ImmutableNamesNarrowFrameStore
getClsCount() - Method in class edu.stanford.smi.protege.model.framestore.InMemoryFrameDb
getClsCount() - Method in class edu.stanford.smi.protege.model.framestore.MergingNarrowFrameStore
getClsCount() - Method in class edu.stanford.smi.protege.model.framestore.ModificationFrameStore
getClsCount() - Method in interface edu.stanford.smi.protege.model.framestore.NarrowFrameStore
getClsCount() - Method in class edu.stanford.smi.protege.model.framestore.PlaceHolderNarrowFrameStore
getClsCount() - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
getClsCount() - Method in class edu.stanford.smi.protege.model.framestore.TemplateFrameStore
getClsCount() - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getClsCount() - Method in interface edu.stanford.smi.protege.model.Storage
getClsCount() - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
getClsCount(RemoteSession) - Method in interface edu.stanford.smi.protege.server.framestore.RemoteServerFrameStore
getClsCount(RemoteSession) - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
getClsCount(RemoteSession) - Method in interface edu.stanford.smi.protege.server.narrowframestore.RemoteServerNarrowFrameStore
getClsCount(RemoteSession) - Method in class edu.stanford.smi.protege.server.narrowframestore.ServerNarrowFrameStore
getClsCount() - Method in class edu.stanford.smi.protege.storage.database.DefaultDatabaseFrameDb
getClsCount() - Method in class edu.stanford.smi.protege.storage.database.IdleConnectionNarrowFrameStore
getClsCount() - Method in class edu.stanford.smi.protege.storage.database.ValueCachingNarrowFrameStore
getClses() - Method in interface edu.stanford.smi.protege.code.generator.wrapping.JavaCodeGeneratorOptions
getClses() - Method in class edu.stanford.smi.protege.code.generator.wrapping.JavaCodeGeneratorPanel
getClses() - Method in class edu.stanford.smi.protege.code.generator.wrapping.ProjectBasedJavaCodeGeneratorOptions
getClses() - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getClses() - Method in class edu.stanford.smi.protege.model.framestore.ArgumentCheckingFrameStore
getClses() - Method in interface edu.stanford.smi.protege.model.framestore.FrameStore
getClses() - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreAdapter
getClses() - Method in class edu.stanford.smi.protege.model.framestore.ModificationFrameStore
getClses() - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
getClses() - Method in class edu.stanford.smi.protege.model.framestore.TemplateFrameStore
getClses() - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getClses() - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
getClses(RemoteSession) - Method in interface edu.stanford.smi.protege.server.framestore.RemoteServerFrameStore
getClses(RemoteSession) - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
getClsesAndInstancesIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getClsesFileName() - Method in class edu.stanford.smi.protege.storage.clips.ClipsFilePanel
getClsesIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getClsesSourceFile(PropertyList) - Static method in class edu.stanford.smi.protege.storage.clips.ClipsKnowledgeBaseFactory
getClsesSourceReader(KnowledgeBase, PropertyList, Collection) - Method in class edu.stanford.smi.protege.storage.clips.ClipsKnowledgeBaseFactory
getClsesSourceRelativeURI(PropertyList) - Static method in class edu.stanford.smi.protege.storage.clips.ClipsKnowledgeBaseFactory
getClsesToBeDeleted(Cls, FrameStore) - Static method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
  This method should not be down here in the frame store chain.
getClsesToDelete(Cls) - Method in class edu.stanford.smi.protege.model.framestore.DeleteSimplificationFrameStore
getClsesTree() - Method in class edu.stanford.smi.protege.ui.ClsesPanel
getClsesWithAnyDirectTemplateSlotValue(Slot) - Method in class edu.stanford.smi.protege.model.framestore.ArgumentCheckingFrameStore
getClsesWithAnyDirectTemplateSlotValue(Slot) - Method in interface edu.stanford.smi.protege.model.framestore.FrameStore
getClsesWithAnyDirectTemplateSlotValue(Slot) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreAdapter
getClsesWithAnyDirectTemplateSlotValue(Slot) - Method in class edu.stanford.smi.protege.model.framestore.ModificationFrameStore
getClsesWithAnyDirectTemplateSlotValue(Slot) - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
getClsesWithAnyDirectTemplateSlotValue(Slot) - Method in class edu.stanford.smi.protege.model.framestore.TemplateFrameStore
getClsesWithAnyDirectTemplateSlotValue(Slot) - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
getClsesWithAnyDirectTemplateSlotValue(Slot, RemoteSession) - Method in interface edu.stanford.smi.protege.server.framestore.RemoteServerFrameStore
getClsesWithAnyDirectTemplateSlotValue(Slot, RemoteSession) - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
getClsesWithCustomizedForms() - Method in class edu.stanford.smi.protege.model.Project
getClsesWithDirectBrowserSlots() - Method in class edu.stanford.smi.protege.model.Project
getClsesWithDirectTemplateFacetValue(Slot, Facet, Object) - Method in class edu.stanford.smi.protege.model.framestore.ArgumentCheckingFrameStore
getClsesWithDirectTemplateFacetValue(Slot, Facet, Object) - Method in interface edu.stanford.smi.protege.model.framestore.FrameStore
getClsesWithDirectTemplateFacetValue(Slot, Facet, Object) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreAdapter
getClsesWithDirectTemplateFacetValue(Slot, Facet, Object) - Method in class edu.stanford.smi.protege.model.framestore.ModificationFrameStore
getClsesWithDirectTemplateFacetValue(Slot, Facet, Object) - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
getClsesWithDirectTemplateFacetValue(Slot, Facet, Object) - Method in class edu.stanford.smi.protege.model.framestore.TemplateFrameStore
getClsesWithDirectTemplateFacetValue(Slot, Facet, Object) - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
getClsesWithDirectTemplateFacetValue(Slot, Facet, Object, RemoteSession) - Method in interface edu.stanford.smi.protege.server.framestore.RemoteServerFrameStore
getClsesWithDirectTemplateFacetValue(Slot, Facet, Object, RemoteSession) - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
getClsesWithDirectTemplateSlotValue(Slot, Object) - Method in class edu.stanford.smi.protege.model.framestore.ArgumentCheckingFrameStore
getClsesWithDirectTemplateSlotValue(Slot, Object) - Method in interface edu.stanford.smi.protege.model.framestore.FrameStore
getClsesWithDirectTemplateSlotValue(Slot, Object) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreAdapter
getClsesWithDirectTemplateSlotValue(Slot, Object) - Method in class edu.stanford.smi.protege.model.framestore.ModificationFrameStore
getClsesWithDirectTemplateSlotValue(Slot, Object) - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
getClsesWithDirectTemplateSlotValue(Slot, Object) - Method in class edu.stanford.smi.protege.model.framestore.TemplateFrameStore
getClsesWithDirectTemplateSlotValue(Slot, Object) - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
getClsesWithDirectTemplateSlotValue(Slot, Object, RemoteSession) - Method in interface edu.stanford.smi.protege.server.framestore.RemoteServerFrameStore
getClsesWithDirectTemplateSlotValue(Slot, Object, RemoteSession) - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
getClsesWithMatchingBrowserText(String, Collection, int) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getClsesWithMatchingBrowserText(String, Collection, int) - Method in class edu.stanford.smi.protege.model.framestore.ArgumentCheckingFrameStore
getClsesWithMatchingBrowserText(String, Collection, int) - Method in interface edu.stanford.smi.protege.model.framestore.FrameStore
getClsesWithMatchingBrowserText(String, Collection, int) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreAdapter
getClsesWithMatchingBrowserText(String, Collection, int) - Method in class edu.stanford.smi.protege.model.framestore.ModificationFrameStore
getClsesWithMatchingBrowserText(String, Collection, int) - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
getClsesWithMatchingBrowserText(String, Collection, int) - Method in class edu.stanford.smi.protege.model.framestore.TemplateFrameStore
getClsesWithMatchingBrowserText(String, Collection, int) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getClsesWithMatchingBrowserText(String, Collection, int) - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
getClsesWithMatchingBrowserText(String, Collection, int, RemoteSession) - Method in interface edu.stanford.smi.protege.server.framestore.RemoteServerFrameStore
getClsesWithMatchingBrowserText(String, Collection, int, RemoteSession) - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
getClsesWithMatchingDirectTemplateFacetValue(Slot, Facet, String, int) - Method in class edu.stanford.smi.protege.model.framestore.ArgumentCheckingFrameStore
getClsesWithMatchingDirectTemplateFacetValue(Slot, Facet, String, int) - Method in interface edu.stanford.smi.protege.model.framestore.FrameStore
getClsesWithMatchingDirectTemplateFacetValue(Slot, Facet, String, int) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreAdapter
getClsesWithMatchingDirectTemplateFacetValue(Slot, Facet, String, int) - Method in class edu.stanford.smi.protege.model.framestore.ModificationFrameStore
getClsesWithMatchingDirectTemplateFacetValue(Slot, Facet, String, int) - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
getClsesWithMatchingDirectTemplateFacetValue(Slot, Facet, String, int) - Method in class edu.stanford.smi.protege.model.framestore.TemplateFrameStore
getClsesWithMatchingDirectTemplateFacetValue(Slot, Facet, String, int) - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
getClsesWithMatchingDirectTemplateFacetValue(Slot, Facet, String, int, RemoteSession) - Method in interface edu.stanford.smi.protege.server.framestore.RemoteServerFrameStore
getClsesWithMatchingDirectTemplateFacetValue(Slot, Facet, String, int, RemoteSession) - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
getClsesWithMatchingDirectTemplateSlotValue(Slot, String, int) - Method in class edu.stanford.smi.protege.model.framestore.ArgumentCheckingFrameStore
getClsesWithMatchingDirectTemplateSlotValue(Slot, String, int) - Method in interface edu.stanford.smi.protege.model.framestore.FrameStore
getClsesWithMatchingDirectTemplateSlotValue(Slot, String, int) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreAdapter
getClsesWithMatchingDirectTemplateSlotValue(Slot, String, int) - Method in class edu.stanford.smi.protege.model.framestore.ModificationFrameStore
getClsesWithMatchingDirectTemplateSlotValue(Slot, String, int) - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
getClsesWithMatchingDirectTemplateSlotValue(Slot, String, int) - Method in class edu.stanford.smi.protege.model.framestore.TemplateFrameStore
getClsesWithMatchingDirectTemplateSlotValue(Slot, String, int) - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
getClsesWithMatchingDirectTemplateSlotValue(Slot, String, int, RemoteSession) - Method in interface edu.stanford.smi.protege.server.framestore.RemoteServerFrameStore
getClsesWithMatchingDirectTemplateSlotValue(Slot, String, int, RemoteSession) - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
getClsHideNoteIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getClsIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getClsIcon(boolean, boolean, boolean, boolean) - Static method in class edu.stanford.smi.protege.resource.Icons
getClsImage() - Static method in class edu.stanford.smi.protege.resource.Icons
getClsJavaClassIds() - Method in interface edu.stanford.smi.protege.model.FrameFactory
getClsJavaClassIds() - Method in class edu.stanford.smi.protege.model.framestore.DefaultFrameFactory
getClsNameMatches(String, int) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getClsNameMatches(String, int) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
  Get classes whose name matches the give string.
getClsNoteIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getClsSelectionColor() - Static method in class edu.stanford.smi.protege.resource.Colors
getClsSlots() - Method in class edu.stanford.smi.protege.widget.FormWidget
getClsTree() - Method in class edu.stanford.smi.protege.widget.AbstractTabWidget
getClsWidget() - Method in class edu.stanford.smi.protege.event.ProjectEvent
getClsWidget() - Method in class edu.stanford.smi.protege.widget.AbstractSlotWidget
getClsWidgetPropertyList(Cls) - Method in class edu.stanford.smi.protege.model.Project
getCollectionFlavor() - Static method in class edu.stanford.smi.protege.util.TransferableCollection
getCollectionTransferData() - Method in class edu.stanford.smi.protege.util.TransferableCollection
getColumn() - Method in class edu.stanford.smi.protege.storage.clips.SimpleCharStream
  Deprecated.
getColumnClass(int) - Method in class edu.stanford.smi.protege.server.admin.UserInfoTableModel
getColumnClass(int) - Method in class edu.stanford.smi.protege.widget.PropertiesTableModel
getColumnCount() - Method in class edu.stanford.smi.protege.server.admin.UserInfoTableModel
getColumnCount() - Method in class edu.stanford.smi.protege.util.RowTableModel
getColumnCount() - Method in class edu.stanford.smi.protege.widget.PropertiesTableModel
getColumnName() - Method in enum edu.stanford.smi.protege.server.admin.UserInfoTableModel.Column
getColumnName(int) - Method in class edu.stanford.smi.protege.server.admin.UserInfoTableModel
getColumnName(int) - Method in class edu.stanford.smi.protege.util.RowTableModel
getColumnName(int) - Method in class edu.stanford.smi.protege.widget.PropertiesTableModel
getComboBox() - Method in class edu.stanford.smi.protege.widget.ComboBoxWidget
getComboBoxSelection() - Method in class edu.stanford.smi.protege.widget.ComboBoxWidget
getCommandManager() - Static method in class edu.stanford.smi.protege.action.ProjectAction
getCommandManager() - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getCommandManager() - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getComment() - Method in class edu.stanford.smi.protege.plugin.AbstractImportExportSpecification
getComment() - Method in class edu.stanford.smi.protege.ui.ArchivePanel
getComment() - Method in class edu.stanford.smi.protege.util.ArchiveRecord
getCommits() - Method in class edu.stanford.smi.protege.server.framestore.Registration
getComparator() - Method in class edu.stanford.smi.protege.ui.ClsClsReferenceNode
getComparator() - Method in class edu.stanford.smi.protege.ui.ClsClsReferenceRoot
getComparator() - Method in class edu.stanford.smi.protege.ui.ParentChildNode
getComparator() - Method in class edu.stanford.smi.protege.ui.ParentChildRoot
getComparator() - Method in class edu.stanford.smi.protege.ui.ReferenceNode
getComparator() - Method in class edu.stanford.smi.protege.ui.ReferenceRoot
getComparator() - Method in class edu.stanford.smi.protege.ui.SlotSubslotNode
getComparator() - Method in class edu.stanford.smi.protege.ui.SlotSubslotRoot
getComparator() - Method in class edu.stanford.smi.protege.util.LazyTreeNode
getComponent() - Method in class edu.stanford.smi.protege.ui.HeaderComponent
getComponent() - Method in class edu.stanford.smi.protege.util.AbstractValidatableComponent
getComponent() - Method in interface edu.stanford.smi.protege.widget.ValuesComponent
getCompressedSize() - Method in class edu.stanford.smi.protege.server.socket.deflate.PacketHeader
getConcreteSubclasses() - Method in interface edu.stanford.smi.protege.model.Cls
getConcreteSubclasses() - Method in class edu.stanford.smi.protege.model.DefaultCls
getConfigPanel() - Method in class edu.stanford.smi.protege.ui.ExportConfigurationPanel
getConfigureIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getConnection() - Method in class edu.stanford.smi.protege.storage.database.pool.ConnectionInfo
getConnection() - Method in class edu.stanford.smi.protege.storage.database.pool.ConnectionPool
getConnectionCallStack() - Method in class edu.stanford.smi.protege.storage.database.pool.ConnectionInfo
getConnectionPool(String, String, String, String) - Static method in class edu.stanford.smi.protege.storage.database.pool.ConnectionPool
getConstraint() - Method in class edu.stanford.smi.protege.model.DefaultFacet
getConstraint() - Method in interface edu.stanford.smi.protege.model.Facet
getConstraintCls() - Method in class edu.stanford.smi.protege.model.SystemFrames
getConstraintsFacet() - Method in class edu.stanford.smi.protege.model.SystemFrames
getConstraintsSlot() - Method in class edu.stanford.smi.protege.model.SystemFrames
getCopyIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getCopyIcon(boolean, boolean) - Static method in class edu.stanford.smi.protege.resource.Icons
getCopyQueryIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getCopyright() - Static method in class edu.stanford.smi.protege.resource.Text
getCounter() - Method in class edu.stanford.smi.protege.server.util.FifoReader
getCounter() - Method in class edu.stanford.smi.protege.server.util.FifoWriter
getCreateAction() - Method in class edu.stanford.smi.protege.ui.SubslotPane
getCreateClsAction() - Method in class edu.stanford.smi.protege.ui.ClsesPanel
getCreateClsIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getCreateClsNoteIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getCreateIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getCreateInstanceAction() - Method in class edu.stanford.smi.protege.widget.InstanceFieldWidget
getCreateInstanceAction() - Method in class edu.stanford.smi.protege.widget.InstanceListWidget
getCreateInstanceIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getCreateInstanceNoteIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getCreateSlotAction() - Method in class edu.stanford.smi.protege.widget.TemplateSlotsWidget
getCreateSlotIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getCreateSlotNoteIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getCreateSlotWithSlotMetaclassAction() - Method in class edu.stanford.smi.protege.ui.SubslotPane
getCreateSubslotAction() - Method in class edu.stanford.smi.protege.ui.SubslotPane
getCreationTimestampSlot() - Method in class edu.stanford.smi.protege.model.SystemFrames
getCreatorSlot() - Method in class edu.stanford.smi.protege.model.SystemFrames
getCurrentClsWidget() - Method in class edu.stanford.smi.protege.ui.InstanceDisplay
  Deprecated. Use #getCurrentClsWidgets() or #getFirstClsWidget
getCurrentConnection() - Method in class edu.stanford.smi.protege.storage.database.AbstractDatabaseFrameDb
getCurrentDialog() - Static method in class edu.stanford.smi.protege.util.ModalDialog
getCurrentInstance() - Method in class edu.stanford.smi.protege.ui.InstanceDisplay
getCurrentPage() - Method in class edu.stanford.smi.protege.util.Wizard
getCurrentProject() - Method in class edu.stanford.smi.protege.ui.ProjectManager
getCurrentProjectMainToolBar() - Method in class edu.stanford.smi.protege.ui.ProjectManager
getCurrentProjectMenuBar() - Method in class edu.stanford.smi.protege.ui.ProjectManager
getCurrentProjects(RemoteSession) - Method in class edu.stanford.smi.protege.server.Server
getCurrentProjectToolBar() - Method in class edu.stanford.smi.protege.ui.ProjectManager
  Deprecated. Use #getCurrentProjectSystemToolBar()
getCurrentProjectView() - Method in class edu.stanford.smi.protege.ui.ProjectManager
getCurrentSession(KnowledgeBase) - Static method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
getCurrentSession() - Static method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
getCurrentSessions(String, RemoteSession) - Method in interface edu.stanford.smi.protege.server.RemoteServer
getCurrentSessions(RemoteSession) - Method in interface edu.stanford.smi.protege.server.RemoteServerProject
getCurrentSessions() - Method in class edu.stanford.smi.protege.server.Server
getCurrentSessions(RemoteServerProject) - Method in class edu.stanford.smi.protege.server.Server
getCurrentSessions(String, RemoteSession) - Method in class edu.stanford.smi.protege.server.Server
getCurrentSessions(RemoteSession) - Method in class edu.stanford.smi.protege.server.ServerProject
getCurrentUsers() - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getCurrentUsers() - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getCurrentUsers() - Method in class edu.stanford.smi.protege.model.Project
getCurrentUsers() - Method in class edu.stanford.smi.protege.server.RemoteClientProject
getCustomizedParent(Cls) - Method in class edu.stanford.smi.protege.widget.FormWidget
getCutIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getCutIcon(boolean, boolean) - Static method in class edu.stanford.smi.protege.resource.Icons
getDatabaseFrameDb(KnowledgeBase) - Static method in class edu.stanford.smi.protege.storage.database.DatabaseKnowledgeBaseFactory
getDatabaseFrameDbClass() - Method in class edu.stanford.smi.protege.storage.database.DatabaseKnowledgeBaseFactory
getDatabaseMajorVersion() - Method in class edu.stanford.smi.protege.storage.database.RobustConnection
getDatabaseMinorVersion() - Method in class edu.stanford.smi.protege.storage.database.RobustConnection
getDatabaseProductName() - Method in class edu.stanford.smi.protege.storage.database.RobustConnection
getDateFormat() - Static method in class edu.stanford.smi.protege.util.ArchiveManager
getDateString() - Static method in class edu.stanford.smi.protege.util.AbstractFormatter
getDefaultClsMetaCls() - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getDefaultClsMetaCls() - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
  If no meta class is specified when a class is created the system uses the metaclass of the first specified parent.
getDefaultFacetMetaCls() - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getDefaultFacetMetaCls() - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getDefaultKnowledgeBase() - Method in class edu.stanford.smi.protege.model.DefaultFrame
getDefaultLabel() - Method in class edu.stanford.smi.protege.widget.AbstractSlotWidget
getDefaultMainFrameSize() - Static method in class edu.stanford.smi.protege.util.ComponentUtilities
getDefaultNewProjectSaveDirectory() - Static method in class edu.stanford.smi.protege.server.ServerProperties
getDefaultSlotMetaCls() - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getDefaultSlotMetaCls() - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getDefaultToolTip() - Method in class edu.stanford.smi.protege.widget.AbstractSlotWidget
getDefaultToolTip() - Method in interface edu.stanford.smi.protege.widget.SlotWidget
getDefaultTransactionIsolationLevel() - Static method in class edu.stanford.smi.protege.server.ServerProperties
getDefaultValue() - Method in enum edu.stanford.smi.protege.storage.database.DatabaseProperty
getDefaultValues(Slot) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getDefaultValues() - Method in class edu.stanford.smi.protege.model.DefaultSlot
getDefaultValues(Slot) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getDefaultValues() - Method in interface edu.stanford.smi.protege.model.Slot
getDefaultValuesFacet() - Method in class edu.stanford.smi.protege.model.SystemFrames
getDefaultValuesSlot() - Method in class edu.stanford.smi.protege.model.SystemFrames
getDefaultWidgetClassName(Cls, Slot, Facet) - Method in class edu.stanford.smi.protege.model.Project
getDefaultWidgetClassName(Slot) - Static method in class edu.stanford.smi.protege.plugin.PluginUtilities
getDefaultWidgetClassName(boolean, ValueType, Cls) - Static method in class edu.stanford.smi.protege.plugin.PluginUtilities
getDefaultWidgetClassName(boolean, ValueType, Cls, Slot) - Static method in class edu.stanford.smi.protege.plugin.PluginUtilities
getDefaultWidgetClassName(Cls, Slot, Facet) - Method in class edu.stanford.smi.protege.widget.DefaultWidgetMapper
getDefaultWidgetClassName(Cls, Slot, Facet) - Method in interface edu.stanford.smi.protege.widget.WidgetMapper
getDefiningProjectURI() - Method in class edu.stanford.smi.protege.model.DefaultFrame
  Deprecated.
getDelegate() - Method in class edu.stanford.smi.protege.model.framestore.AbstractFrameStore
getDelegate() - Method in class edu.stanford.smi.protege.model.framestore.AbstractFrameStoreInvocationHandler
getDelegate() - Method in class edu.stanford.smi.protege.model.framestore.ClosureCachingBasicFrameStore
getDelegate() - Method in interface edu.stanford.smi.protege.model.framestore.FrameStore
getDelegate() - Method in class edu.stanford.smi.protege.model.framestore.ImmutableNamesNarrowFrameStore
getDelegate() - Method in class edu.stanford.smi.protege.model.framestore.InMemoryFrameDb
getDelegate() - Method in class edu.stanford.smi.protege.model.framestore.MergingNarrowFrameStore
getDelegate() - Method in interface edu.stanford.smi.protege.model.framestore.NarrowFrameStore
getDelegate() - Method in class edu.stanford.smi.protege.model.framestore.PlaceHolderNarrowFrameStore
getDelegate() - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
getDelegate() - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
getDelegate(RemoteSession) - Method in interface edu.stanford.smi.protege.server.narrowframestore.RemoteServerNarrowFrameStore
getDelegate(RemoteSession) - Method in class edu.stanford.smi.protege.server.narrowframestore.ServerNarrowFrameStore
getDelegate() - Method in class edu.stanford.smi.protege.server.socket.CompressionAspect
getDelegate() - Method in class edu.stanford.smi.protege.server.socket.MonitoringAspect
getDelegate() - Method in class edu.stanford.smi.protege.server.socket.SimulateDelayAspect
getDelegate() - Method in interface edu.stanford.smi.protege.server.socket.SocketAspect
getDelegate() - Method in class edu.stanford.smi.protege.server.socket.TeeAspect
getDelegate() - Method in class edu.stanford.smi.protege.storage.database.DefaultDatabaseFrameDb
getDelegate() - Method in class edu.stanford.smi.protege.storage.database.IdleConnectionNarrowFrameStore
getDelegate() - Method in class edu.stanford.smi.protege.storage.database.ValueCachingNarrowFrameStore
getDeleteAction() - Method in class edu.stanford.smi.protege.ui.SubslotPane
getDeleteAction() - Method in class edu.stanford.smi.protege.widget.ProtegePropertiesComponent
getDeleteClsAction() - Method in class edu.stanford.smi.protege.ui.ClsesPanel
getDeleteClsIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getDeleteClsNoteIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getDeleteIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getDeleteInstanceIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getDeleteInstanceNoteIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getDeleteInstancesAction() - Method in class edu.stanford.smi.protege.widget.InstanceFieldWidget
getDeleteInstancesAction() - Method in class edu.stanford.smi.protege.widget.InstanceListWidget
getDeleteQueryIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getDeleteSlotIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getDeleteSlotNoteIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getDescendentOfClass(Class, Component) - Static method in class edu.stanford.smi.protege.util.ComponentUtilities
getDescendents(X) - Method in class edu.stanford.smi.protege.util.Tree
getDescendentsOfClass(Class, Component) - Static method in class edu.stanford.smi.protege.util.ComponentUtilities
getDescription() - Method in interface edu.stanford.smi.protege.model.framestore.undo.Command
getDescription() - Method in class edu.stanford.smi.protege.model.framestore.undo.MacroCommand
getDescription() - Method in interface edu.stanford.smi.protege.model.KnowledgeBaseFactory
getDescription() - Method in interface edu.stanford.smi.protege.plugin.CreateProjectFromFilePlugin
getDescription() - Method in interface edu.stanford.smi.protege.server.metaproject.Group
getDescription() - Method in class edu.stanford.smi.protege.server.metaproject.impl.GroupImpl
getDescription() - Method in class edu.stanford.smi.protege.server.metaproject.impl.OperationImpl
getDescription() - Method in class edu.stanford.smi.protege.server.metaproject.impl.PolicyControlledObjectImpl
getDescription() - Method in class edu.stanford.smi.protege.server.metaproject.impl.UnbackedOperationImpl
getDescription() - Method in class edu.stanford.smi.protege.server.metaproject.impl.UserImpl
getDescription() - Method in interface edu.stanford.smi.protege.server.metaproject.Operation
getDescription() - Method in interface edu.stanford.smi.protege.server.metaproject.PolicyControlledObject
getDescription() - Method in interface edu.stanford.smi.protege.server.metaproject.User
getDescription() - Method in class edu.stanford.smi.protege.server.util.ProjectInfo
getDescription() - Method in class edu.stanford.smi.protege.storage.clips.ClipsKnowledgeBaseFactory
getDescription() - Method in class edu.stanford.smi.protege.storage.database.DatabaseKnowledgeBaseFactory
getDescription() - Method in class edu.stanford.smi.protege.storage.xml.XMLKnowledgeBaseFactory
getDescription() - Method in class edu.stanford.smi.protege.util.ExtensionFilter
getDescriptionPropertyName(String) - Static method in class edu.stanford.smi.protege.widget.ButtonConfigurationPanel
getDescriptor() - Method in class edu.stanford.smi.protege.widget.AbstractWidget
getDescriptor() - Method in interface edu.stanford.smi.protege.widget.Widget
getDesignTimeClsWidget(Cls) - Method in class edu.stanford.smi.protege.model.Project
getDialog(Component) - Static method in class edu.stanford.smi.protege.util.ComponentUtilities
getDigest() - Method in class edu.stanford.smi.protege.util.DigestAndSalt
getDigestedPassword() - Method in class edu.stanford.smi.protege.server.metaproject.impl.UserImpl
getDigestedPassword() - Method in interface edu.stanford.smi.protege.server.metaproject.User
getDimension(Instance) - Static method in class edu.stanford.smi.protege.util.InstanceUtilities
getDimension(String) - Method in class edu.stanford.smi.protege.util.PropertyList
getDirectBrowserSlot() - Method in interface edu.stanford.smi.protege.model.Cls
  Deprecated.
getDirectBrowserSlot() - Method in class edu.stanford.smi.protege.model.DefaultCls
  Deprecated. Use #getDirectBrowserSlotPattern
getDirectBrowserSlot(Cls) - Method in class edu.stanford.smi.protege.model.Project
  Deprecated.
getDirectBrowserSlotPattern() - Method in interface edu.stanford.smi.protege.model.Cls
getDirectBrowserSlotPattern() - Method in class edu.stanford.smi.protege.model.DefaultCls
getDirectBrowserSlotPattern(Cls) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getDirectBrowserSlotPattern(Cls) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getDirectBrowserSlotPattern(Cls) - Method in class edu.stanford.smi.protege.model.Project
getDirectClsCount() - Method in interface edu.stanford.smi.protege.model.FrameCounts
getDirectClsCount() - Method in class edu.stanford.smi.protege.model.FrameCountsImpl
getDirectDomain(Slot) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getDirectDomain() - Method in class edu.stanford.smi.protege.model.DefaultSlot
getDirectDomain(Slot) - Method in class edu.stanford.smi.protege.model.framestore.ArgumentCheckingFrameStore
getDirectDomain(Slot) - Method in interface edu.stanford.smi.protege.model.framestore.FrameStore
getDirectDomain(Slot) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreAdapter
getDirectDomain(Slot) - Method in class edu.stanford.smi.protege.model.framestore.ModificationFrameStore
getDirectDomain(Slot) - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
getDirectDomain(Slot) - Method in class edu.stanford.smi.protege.model.framestore.TemplateFrameStore
getDirectDomain(Slot) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getDirectDomain() - Method in interface edu.stanford.smi.protege.model.Slot
getDirectDomain(Slot) - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
getDirectDomainSlot() - Method in class edu.stanford.smi.protege.model.SystemFrames
getDirectedBinaryRelationCls() - Method in class edu.stanford.smi.protege.model.SystemFrames
getDirectFacetCount() - Method in interface edu.stanford.smi.protege.model.FrameCounts
getDirectFacetCount() - Method in class edu.stanford.smi.protege.model.FrameCountsImpl
getDirectFrameCount() - Method in interface edu.stanford.smi.protege.model.FrameCounts
getDirectFrameCount() - Method in class edu.stanford.smi.protege.model.FrameCountsImpl
getDirectIncludedProjects() - Method in class edu.stanford.smi.protege.model.Project
  Deprecated. Use #getDirectIncludedProjectURIs()
getDirectIncludedProjectURIs() - Method in class edu.stanford.smi.protege.model.Project
getDirectInstanceCount() - Method in interface edu.stanford.smi.protege.model.Cls
getDirectInstanceCount() - Method in class edu.stanford.smi.protege.model.DefaultCls
getDirectInstanceCount(Cls) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getDirectInstanceCount(Cls) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getDirectInstances() - Method in interface edu.stanford.smi.protege.model.Cls
getDirectInstances() - Method in class edu.stanford.smi.protege.model.DefaultCls
getDirectInstances(Cls) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getDirectInstances(Cls) - Method in class edu.stanford.smi.protege.model.framestore.ArgumentCheckingFrameStore
getDirectInstances(Cls) - Method in interface edu.stanford.smi.protege.model.framestore.FrameStore
getDirectInstances(Cls) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreAdapter
getDirectInstances(Cls) - Method in class edu.stanford.smi.protege.model.framestore.ModificationFrameStore
getDirectInstances(Cls) - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
getDirectInstances(Cls) - Method in class edu.stanford.smi.protege.model.framestore.TemplateFrameStore
getDirectInstances(Cls) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getDirectInstances(Cls) - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
getDirectInstancesList() - Method in class edu.stanford.smi.protege.widget.InstancesTab
getDirectInstancesSlot() - Method in class edu.stanford.smi.protege.model.SystemFrames
getDirectlyOverriddenTemplateFacets(Slot) - Method in interface edu.stanford.smi.protege.model.Cls
getDirectlyOverriddenTemplateFacets(Slot) - Method in class edu.stanford.smi.protege.model.DefaultCls
getDirectlyOverriddenTemplateFacets(Cls, Slot) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getDirectlyOverriddenTemplateFacets(Cls, Slot) - Method in class edu.stanford.smi.protege.model.framestore.ArgumentCheckingFrameStore
getDirectlyOverriddenTemplateFacets(Cls, Slot) - Method in interface edu.stanford.smi.protege.model.framestore.FrameStore
getDirectlyOverriddenTemplateFacets(Cls, Slot) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreAdapter
getDirectlyOverriddenTemplateFacets(Cls, Slot) - Method in class edu.stanford.smi.protege.model.framestore.ModificationFrameStore
getDirectlyOverriddenTemplateFacets(Cls, Slot) - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
getDirectlyOverriddenTemplateFacets(Cls, Slot) - Method in class edu.stanford.smi.protege.model.framestore.TemplateFrameStore
getDirectlyOverriddenTemplateFacets(Cls, Slot) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getDirectlyOverriddenTemplateFacets(Cls, Slot) - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
getDirectlyOverriddenTemplateFacets(Cls, Slot, RemoteSession) - Method in interface edu.stanford.smi.protege.server.framestore.RemoteServerFrameStore
getDirectlyOverriddenTemplateFacets(Cls, Slot, RemoteSession) - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
getDirectlyOverriddenTemplateSlots(Cls) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getDirectlyOverriddenTemplateSlots(Cls) - Method in class edu.stanford.smi.protege.model.framestore.ArgumentCheckingFrameStore
getDirectlyOverriddenTemplateSlots(Cls) - Method in interface edu.stanford.smi.protege.model.framestore.FrameStore
getDirectlyOverriddenTemplateSlots(Cls) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreAdapter
getDirectlyOverriddenTemplateSlots(Cls) - Method in class edu.stanford.smi.protege.model.framestore.ModificationFrameStore
getDirectlyOverriddenTemplateSlots(Cls) - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
getDirectlyOverriddenTemplateSlots(Cls) - Method in class edu.stanford.smi.protege.model.framestore.TemplateFrameStore
getDirectlyOverriddenTemplateSlots(Cls) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getDirectlyOverriddenTemplateSlots(Cls) - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
getDirectlyOverriddenTemplateSlots(Cls, RemoteSession) - Method in interface edu.stanford.smi.protege.server.framestore.RemoteServerFrameStore
getDirectlyOverriddenTemplateSlots(Cls, RemoteSession) - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
getDirectory() - Method in class edu.stanford.smi.protege.util.DirectoryClassLoader
getDirectOwnSlotValue(Slot) - Method in class edu.stanford.smi.protege.model.DefaultFrame
getDirectOwnSlotValue(Frame, Slot) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getDirectOwnSlotValue(Slot) - Method in interface edu.stanford.smi.protege.model.Frame
  see `Frame` for a description of the return type
getDirectOwnSlotValue(Frame, Slot) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getDirectOwnSlotValue(Frame, String) - Static method in class edu.stanford.smi.protege.model.ModelUtilities
getDirectOwnSlotValues(Slot) - Method in class edu.stanford.smi.protege.model.DefaultFrame
getDirectOwnSlotValues(Frame, Slot) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getDirectOwnSlotValues(Slot) - Method in interface edu.stanford.smi.protege.model.Frame
  See `Frame` for a description of the return type.
getDirectOwnSlotValues(Frame, Slot) - Method in class edu.stanford.smi.protege.model.framestore.ArgumentCheckingFrameStore
getDirectOwnSlotValues(Frame, Slot) - Method in class edu.stanford.smi.protege.model.framestore.cleandispatch.CleanDispatchFrameStore
getDirectOwnSlotValues(Frame, Slot) - Method in interface edu.stanford.smi.protege.model.framestore.FrameStore
getDirectOwnSlotValues(Frame, Slot) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreAdapter
getDirectOwnSlotValues(Frame, Slot) - Method in class edu.stanford.smi.protege.model.framestore.ModificationFrameStore
getDirectOwnSlotValues(Frame, Slot) - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
getDirectOwnSlotValues(Frame, Slot) - Method in class edu.stanford.smi.protege.model.framestore.TemplateFrameStore
getDirectOwnSlotValues(Frame, Slot) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getDirectOwnSlotValues(Frame, String) - Static method in class edu.stanford.smi.protege.model.ModelUtilities
getDirectOwnSlotValues(Frame, Slot) - Method in class edu.stanford.smi.protege.server.framestore.FrameCalculatorFrameStore
getDirectOwnSlotValues(Frame, Slot) - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
getDirectOwnSlotValues(Frame, Slot, RemoteSession) - Method in interface edu.stanford.smi.protege.server.framestore.RemoteServerFrameStore
getDirectOwnSlotValues(Frame, Slot, RemoteSession) - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
getDirectOwnSlotValuesClosure(Frame, Slot) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getDirectOwnSlotValuesClosure(Frame, Slot) - Method in class edu.stanford.smi.protege.model.framestore.ArgumentCheckingFrameStore
getDirectOwnSlotValuesClosure(Frame, Slot) - Method in interface edu.stanford.smi.protege.model.framestore.FrameStore
getDirectOwnSlotValuesClosure(Frame, Slot) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreAdapter
getDirectOwnSlotValuesClosure(Frame, Slot) - Method in class edu.stanford.smi.protege.model.framestore.ModificationFrameStore
getDirectOwnSlotValuesClosure(Frame, Slot) - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
getDirectOwnSlotValuesClosure(Frame, Slot) - Method in class edu.stanford.smi.protege.model.framestore.TemplateFrameStore
getDirectOwnSlotValuesClosure(Frame, Slot) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getDirectOwnSlotValuesClosure(Frame, Slot) - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
getDirectOwnSlotValuesClosure(Frame, Slot, Set<Frame>, RemoteSession) - Method in interface edu.stanford.smi.protege.server.framestore.RemoteServerFrameStore
getDirectOwnSlotValuesClosure(Collection<Frame>, Slot, Set<Frame>, RemoteSession) - Method in interface edu.stanford.smi.protege.server.framestore.RemoteServerFrameStore
getDirectOwnSlotValuesClosure(Frame, Slot, Set<Frame>, RemoteSession) - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
getDirectOwnSlotValuesClosure(Collection<Frame>, Slot, Set<Frame>, RemoteSession) - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
getDirectOwnSlotValuesCount(Frame, Slot) - Method in class edu.stanford.smi.protege.model.framestore.ArgumentCheckingFrameStore
getDirectOwnSlotValuesCount(Frame, Slot) - Method in interface edu.stanford.smi.protege.model.framestore.FrameStore
getDirectOwnSlotValuesCount(Frame, Slot) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreAdapter
getDirectOwnSlotValuesCount(Frame, Slot) - Method in class edu.stanford.smi.protege.model.framestore.ModificationFrameStore
getDirectOwnSlotValuesCount(Frame, Slot) - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
getDirectOwnSlotValuesCount(Frame, Slot) - Method in class edu.stanford.smi.protege.model.framestore.TemplateFrameStore
getDirectOwnSlotValuesCount(Frame, Slot) - Method in class edu.stanford.smi.protege.server.framestore.FrameCalculatorFrameStore
getDirectOwnSlotValuesCount(Frame, Slot) - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
getDirectOwnSlotValuesCount(Frame, Slot, RemoteSession) - Method in interface edu.stanford.smi.protege.server.framestore.RemoteServerFrameStore
getDirectOwnSlotValuesCount(Frame, Slot, RemoteSession) - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
getDirectSimpleInstanceCount() - Method in interface edu.stanford.smi.protege.model.FrameCounts
getDirectSimpleInstanceCount() - Method in class edu.stanford.smi.protege.model.FrameCountsImpl
getDirectSlotCount() - Method in interface edu.stanford.smi.protege.model.FrameCounts
getDirectSlotCount() - Method in class edu.stanford.smi.protege.model.FrameCountsImpl
getDirectSubclassCount() - Method in interface edu.stanford.smi.protege.model.Cls
getDirectSubclassCount() - Method in class edu.stanford.smi.protege.model.DefaultCls
getDirectSubclassCount(Cls) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getDirectSubclassCount(Cls) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getDirectSubclasses() - Method in interface edu.stanford.smi.protege.model.Cls
getDirectSubclasses() - Method in class edu.stanford.smi.protege.model.DefaultCls
getDirectSubclasses(Cls) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getDirectSubclasses(Cls) - Method in class edu.stanford.smi.protege.model.framestore.ArgumentCheckingFrameStore
getDirectSubclasses(Cls) - Method in interface edu.stanford.smi.protege.model.framestore.FrameStore
getDirectSubclasses(Cls) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreAdapter
getDirectSubclasses(Cls) - Method in class edu.stanford.smi.protege.model.framestore.ModificationFrameStore
getDirectSubclasses(Cls) - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
getDirectSubclasses(Cls) - Method in class edu.stanford.smi.protege.model.framestore.TemplateFrameStore
getDirectSubclasses(Cls) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getDirectSubclasses(Cls) - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
getDirectSubclassesSlot() - Method in class edu.stanford.smi.protege.model.SystemFrames
getDirectSubslotCount(Slot) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getDirectSubslotCount() - Method in class edu.stanford.smi.protege.model.DefaultSlot
getDirectSubslotCount(Slot) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getDirectSubslotCount() - Method in interface edu.stanford.smi.protege.model.Slot
getDirectSubslots(Slot) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getDirectSubslots() - Method in class edu.stanford.smi.protege.model.DefaultSlot
getDirectSubslots(Slot) - Method in class edu.stanford.smi.protege.model.framestore.ArgumentCheckingFrameStore
getDirectSubslots(Slot) - Method in interface edu.stanford.smi.protege.model.framestore.FrameStore
getDirectSubslots(Slot) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreAdapter
getDirectSubslots(Slot) - Method in class edu.stanford.smi.protege.model.framestore.ModificationFrameStore
getDirectSubslots(Slot) - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
getDirectSubslots(Slot) - Method in class edu.stanford.smi.protege.model.framestore.TemplateFrameStore
getDirectSubslots(Slot) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getDirectSubslots() - Method in interface edu.stanford.smi.protege.model.Slot
getDirectSubslots(Slot) - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
getDirectSubslotsSlot() - Method in class edu.stanford.smi.protege.model.SystemFrames
getDirectSuperclassCount() - Method in interface edu.stanford.smi.protege.model.Cls
getDirectSuperclassCount() - Method in class edu.stanford.smi.protege.model.DefaultCls
getDirectSuperclassCount(Cls) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getDirectSuperclassCount(Cls) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getDirectSuperclasses() - Method in interface edu.stanford.smi.protege.model.Cls
getDirectSuperclasses() - Method in class edu.stanford.smi.protege.model.DefaultCls
getDirectSuperclasses(Cls) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getDirectSuperclasses(Cls) - Method in class edu.stanford.smi.protege.model.framestore.ArgumentCheckingFrameStore
getDirectSuperclasses(Cls) - Method in interface edu.stanford.smi.protege.model.framestore.FrameStore
getDirectSuperclasses(Cls) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreAdapter
getDirectSuperclasses(Cls) - Method in class edu.stanford.smi.protege.model.framestore.ModificationFrameStore
getDirectSuperclasses(Cls) - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
getDirectSuperclasses(Cls) - Method in class edu.stanford.smi.protege.model.framestore.TemplateFrameStore
getDirectSuperclasses(Cls) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getDirectSuperclasses(Cls) - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
getDirectSuperclassesSlot() - Method in class edu.stanford.smi.protege.model.SystemFrames
getDirectSuperslotCount(Slot) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getDirectSuperslotCount() - Method in class edu.stanford.smi.protege.model.DefaultSlot
getDirectSuperslotCount(Slot) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getDirectSuperslotCount() - Method in interface edu.stanford.smi.protege.model.Slot
getDirectSuperslots(Slot) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getDirectSuperslots() - Method in class edu.stanford.smi.protege.model.DefaultSlot
getDirectSuperslots(Slot) - Method in class edu.stanford.smi.protege.model.framestore.ArgumentCheckingFrameStore
getDirectSuperslots(Slot) - Method in interface edu.stanford.smi.protege.model.framestore.FrameStore
getDirectSuperslots(Slot) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreAdapter
getDirectSuperslots(Slot) - Method in class edu.stanford.smi.protege.model.framestore.ModificationFrameStore
getDirectSuperslots(Slot) - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
getDirectSuperslots(Slot) - Method in class edu.stanford.smi.protege.model.framestore.TemplateFrameStore
getDirectSuperslots(Slot) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getDirectSuperslots() - Method in interface edu.stanford.smi.protege.model.Slot
getDirectSuperslots(Slot) - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
getDirectSuperslotsSlot() - Method in class edu.stanford.smi.protege.model.SystemFrames
getDirectTemplateFacetValues(Slot, Facet) - Method in interface edu.stanford.smi.protege.model.Cls
  see `Frame` for a description of the returned objects
getDirectTemplateFacetValues(Slot, Facet) - Method in class edu.stanford.smi.protege.model.DefaultCls
getDirectTemplateFacetValues(Cls, Slot, Facet) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getDirectTemplateFacetValues(Cls, Slot, Facet) - Method in class edu.stanford.smi.protege.model.framestore.ArgumentCheckingFrameStore
getDirectTemplateFacetValues(Cls, Slot, Facet) - Method in interface edu.stanford.smi.protege.model.framestore.FrameStore
getDirectTemplateFacetValues(Cls, Slot, Facet) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreAdapter
getDirectTemplateFacetValues(Cls, Slot, Facet) - Method in class edu.stanford.smi.protege.model.framestore.ModificationFrameStore
getDirectTemplateFacetValues(Cls, Slot, Facet) - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
getDirectTemplateFacetValues(Cls, Slot, Facet) - Method in class edu.stanford.smi.protege.model.framestore.TemplateFrameStore
getDirectTemplateFacetValues(Cls, Slot, Facet) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getDirectTemplateFacetValues(Cls, Slot, Facet) - Method in class edu.stanford.smi.protege.server.framestore.FrameCalculatorFrameStore
getDirectTemplateFacetValues(Cls, Slot, Facet) - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
getDirectTemplateFacetValues(Cls, Slot, Facet, RemoteSession) - Method in interface edu.stanford.smi.protege.server.framestore.RemoteServerFrameStore
getDirectTemplateFacetValues(Cls, Slot, Facet, RemoteSession) - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
getDirectTemplateSlots() - Method in interface edu.stanford.smi.protege.model.Cls
getDirectTemplateSlots() - Method in class edu.stanford.smi.protege.model.DefaultCls
getDirectTemplateSlots(Cls) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getDirectTemplateSlots(Cls) - Method in class edu.stanford.smi.protege.model.framestore.ArgumentCheckingFrameStore
getDirectTemplateSlots(Cls) - Method in interface edu.stanford.smi.protege.model.framestore.FrameStore
getDirectTemplateSlots(Cls) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreAdapter
getDirectTemplateSlots(Cls) - Method in class edu.stanford.smi.protege.model.framestore.ModificationFrameStore
getDirectTemplateSlots(Cls) - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
getDirectTemplateSlots(Cls) - Method in class edu.stanford.smi.protege.model.framestore.TemplateFrameStore
getDirectTemplateSlots(Cls) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getDirectTemplateSlots(Cls) - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
getDirectTemplateSlotsSlot() - Method in class edu.stanford.smi.protege.model.SystemFrames
getDirectTemplateSlotValues(Slot) - Method in interface edu.stanford.smi.protege.model.Cls
  see `Frame` for a description of the returned objects
getDirectTemplateSlotValues(Slot) - Method in class edu.stanford.smi.protege.model.DefaultCls
getDirectTemplateSlotValues(Cls, Slot) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getDirectTemplateSlotValues(Cls, Slot) - Method in class edu.stanford.smi.protege.model.framestore.ArgumentCheckingFrameStore
getDirectTemplateSlotValues(Cls, Slot) - Method in interface edu.stanford.smi.protege.model.framestore.FrameStore
getDirectTemplateSlotValues(Cls, Slot) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreAdapter
getDirectTemplateSlotValues(Cls, Slot) - Method in class edu.stanford.smi.protege.model.framestore.ModificationFrameStore
getDirectTemplateSlotValues(Cls, Slot) - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
getDirectTemplateSlotValues(Cls, Slot) - Method in class edu.stanford.smi.protege.model.framestore.TemplateFrameStore
getDirectTemplateSlotValues(Cls, Slot) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getDirectTemplateSlotValues(Cls, Slot) - Method in class edu.stanford.smi.protege.server.framestore.FrameCalculatorFrameStore
getDirectTemplateSlotValues(Cls, Slot) - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
getDirectTemplateSlotValues(Cls, Slot, RemoteSession) - Method in interface edu.stanford.smi.protege.server.framestore.RemoteServerFrameStore
getDirectTemplateSlotValues(Cls, Slot, RemoteSession) - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
getDirectType() - Method in class edu.stanford.smi.protege.model.DefaultInstance
getDirectType(Instance) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getDirectType() - Method in interface edu.stanford.smi.protege.model.Instance
  return the "first" direct type
getDirectType(Instance) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getDirectTypes() - Method in class edu.stanford.smi.protege.model.DefaultInstance
getDirectTypes(Instance) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getDirectTypes(Instance) - Method in class edu.stanford.smi.protege.model.framestore.ArgumentCheckingFrameStore
getDirectTypes(Instance) - Method in interface edu.stanford.smi.protege.model.framestore.FrameStore
getDirectTypes(Instance) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreAdapter
getDirectTypes(Instance) - Method in class edu.stanford.smi.protege.model.framestore.ModificationFrameStore
getDirectTypes(Instance) - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
getDirectTypes(Instance) - Method in class edu.stanford.smi.protege.model.framestore.TemplateFrameStore
getDirectTypes() - Method in interface edu.stanford.smi.protege.model.Instance
getDirectTypes(Instance) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getDirectTypes(Instance) - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
getDirectTypesSlot() - Method in class edu.stanford.smi.protege.model.SystemFrames
getDispatchEventsEnabled() - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getDispatchEventsEnabled() - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreManager
getDispatchEventsEnabled() - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getDisplayAbstractClassIcon() - Method in class edu.stanford.smi.protege.model.Project
getDisplayConfirmationOnRemove() - Method in class edu.stanford.smi.protege.model.Project
getDisplayedComponent() - Method in class edu.stanford.smi.protege.ui.ClsesPanel
getDisplayHiddenClasses() - Method in class edu.stanford.smi.protege.model.Project
getDisplayHiddenFrames() - Method in class edu.stanford.smi.protege.model.Project
getDisplayMultiParentClassIcon() - Method in class edu.stanford.smi.protege.model.Project
getDisplayNullEntry() - Method in class edu.stanford.smi.protege.widget.ComboBoxWidget
getDisplayParent() - Method in class edu.stanford.smi.protege.ui.ClsesPanel
getDisplayParent() - Method in class edu.stanford.smi.protege.ui.SubclassPane
getDisplayParent() - Method in class edu.stanford.smi.protege.ui.SubslotPane
getDisplayPropertyName(String) - Static method in class edu.stanford.smi.protege.widget.ButtonConfigurationPanel
getDisplaySlotNotSetString(Instance) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getDisplaySlotPatternValueNotSetString(Instance, BrowserSlotPattern) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getDisplayText(URI) - Static method in class edu.stanford.smi.protege.util.URIUtilities
getDocumentation() - Method in class edu.stanford.smi.protege.model.DefaultFrame
getDocumentation(Frame) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getDocumentation() - Method in class edu.stanford.smi.protege.model.DefaultSlot
getDocumentation() - Method in interface edu.stanford.smi.protege.model.Frame
getDocumentation(Frame) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getDocumentation() - Method in interface edu.stanford.smi.protege.model.Slot
getDocumentationFacet() - Method in class edu.stanford.smi.protege.model.SystemFrames
getDocumentationSlot() - Method in class edu.stanford.smi.protege.model.SystemFrames
getDomain(Slot) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getDomain() - Method in class edu.stanford.smi.protege.model.DefaultSlot
getDomain(Slot) - Method in class edu.stanford.smi.protege.model.framestore.ArgumentCheckingFrameStore
getDomain(Slot) - Method in interface edu.stanford.smi.protege.model.framestore.FrameStore
getDomain(Slot) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreAdapter
getDomain(Slot) - Method in class edu.stanford.smi.protege.model.framestore.ModificationFrameStore
getDomain(Slot) - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
getDomain(Slot) - Method in class edu.stanford.smi.protege.model.framestore.TemplateFrameStore
getDomain(Slot) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getDomain() - Method in interface edu.stanford.smi.protege.model.Slot
getDomain(Slot) - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
getDomainKbFactoryClassName() - Method in interface edu.stanford.smi.protege.server.RemoteServerProject
getDomainKbFactoryClassName() - Method in class edu.stanford.smi.protege.server.ServerProject
getDomainKbFrameStore(RemoteSession) - Method in interface edu.stanford.smi.protege.server.RemoteServerProject
getDomainKbFrameStore(RemoteSession) - Method in class edu.stanford.smi.protege.server.ServerProject
getDoneCommands() - Method in interface edu.stanford.smi.protege.model.CommandManager
getDoneCommands() - Method in class edu.stanford.smi.protege.model.framestore.undo.UndoFrameStore
getDoubleClickAction() - Method in class edu.stanford.smi.protege.widget.AbstractSlotWidget
getDoubleClickAction() - Method in class edu.stanford.smi.protege.widget.TemplateSlotsWidget
getDownIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getDragComponent() - Method in class edu.stanford.smi.protege.ui.DirectInstancesList
getDriver(PropertyList) - Static method in class edu.stanford.smi.protege.storage.database.DatabaseKnowledgeBaseFactory
getDriver() - Method in class edu.stanford.smi.protege.storage.database.pool.DatabaseParam
getDropComponent() - Method in class edu.stanford.smi.protege.ui.ClsesPanel
getDropComponent() - Method in class edu.stanford.smi.protege.ui.SubclassPane
getDropComponent() - Method in class edu.stanford.smi.protege.ui.SubslotPane
getDropComponent() - Method in class edu.stanford.smi.protege.widget.InstanceClsesPanel
getElementAt(int) - Method in class edu.stanford.smi.protege.util.ConcurrentListModel
getElementAt(int) - Method in class edu.stanford.smi.protege.util.SimpleListModel
getElements() - Method in class edu.stanford.smi.protege.model.BrowserSlotPattern
getEmail() - Method in class edu.stanford.smi.protege.server.metaproject.impl.UserImpl
getEmail() - Method in interface edu.stanford.smi.protege.server.metaproject.User
getEncoding() - Static method in class edu.stanford.smi.protege.util.FileUtilities
getEndColumn() - Method in class edu.stanford.smi.protege.storage.clips.SimpleCharStream
  Get token end column number.
getEndLine() - Method in class edu.stanford.smi.protege.storage.clips.SimpleCharStream
  Get token end line number.
getErrorCount() - Method in class edu.stanford.smi.protege.util.DefaultLogger
getErrorList() - Method in interface edu.stanford.smi.protege.exception.AmalgamatedException
getErrorList() - Method in exception edu.stanford.smi.protege.exception.AmalgamatedLoadException
getErrorMessage(String, Frame) - Method in interface edu.stanford.smi.protege.model.FrameNameValidator
getErrorMessage(Object) - Method in class edu.stanford.smi.protege.util.FloatValidator
getErrorMessage(Object) - Method in class edu.stanford.smi.protege.util.IntegerValidator
getErrorMessage(Object) - Method in class edu.stanford.smi.protege.util.SymbolValidator
getErrorMessage(Object) - Method in interface edu.stanford.smi.protege.util.Validator
getEscapeCharacter() - Method in class edu.stanford.smi.protege.storage.database.RobustConnection
getEscapeClause() - Method in class edu.stanford.smi.protege.storage.database.RobustConnection
getEvents() - Method in class edu.stanford.smi.protege.model.framestore.ArgumentCheckingFrameStore
getEvents() - Method in class edu.stanford.smi.protege.model.framestore.EventDispatchFrameStore
  When pass through is set for the event dispatch frame store it is the callers responsibility to avoid deadlock situations.
getEvents() - Method in class edu.stanford.smi.protege.model.framestore.EventGeneratorFrameStore
getEvents() - Method in class edu.stanford.smi.protege.model.framestore.EventSinkFrameStore
getEvents() - Method in interface edu.stanford.smi.protege.model.framestore.FrameStore
getEvents() - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreAdapter
getEvents() - Method in class edu.stanford.smi.protege.model.framestore.ModificationFrameStore
getEvents() - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
getEvents() - Method in class edu.stanford.smi.protege.model.framestore.TemplateFrameStore
getEvents() - Method in class edu.stanford.smi.protege.server.framestore.Registration
getEvents() - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
getEvents(RemoteSession) - Method in interface edu.stanford.smi.protege.server.framestore.RemoteServerFrameStore
getEvents(RemoteSession) - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
getEventsEnabled() - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
  Deprecated. Use #getGenerateEventsEnabled(boolean)
getEventsEnabled() - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
  Deprecated. Use #getGenerateEventsEnabled(boolean)
getEventType() - Method in class edu.stanford.smi.protege.util.AbstractEvent
getException() - Method in class edu.stanford.smi.protege.util.MessageError
getExportConfigurationPanel() - Method in class edu.stanford.smi.protege.action.ExportToCsvAction
getExportDataValueName(Object) - Method in class edu.stanford.smi.protege.action.ExportToCsvAction
getExportedClassesInPanel() - Method in class edu.stanford.smi.protege.ui.ExportConfigurationPanel
getExportedFile() - Method in class edu.stanford.smi.protege.ui.ExportConfigurationPanel
getExportedSlots() - Method in class edu.stanford.smi.protege.ui.ExportConfigurationPanel
getExportFile() - Method in class edu.stanford.smi.protege.action.ExportToCsvAction
getExportIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getExportMetadata() - Method in class edu.stanford.smi.protege.action.ExportToCsvAction
getExportMetadataText() - Method in class edu.stanford.smi.protege.ui.ExportConfigurationPanel
getExportName(Frame) - Method in class edu.stanford.smi.protege.action.ExportToCsvAction
getExportProjectWizard() - Method in class edu.stanford.smi.protege.plugin.ExportWizardPage
getExtension() - Method in class edu.stanford.smi.protege.util.PathSplitter
getExtension(URI) - Static method in class edu.stanford.smi.protege.util.URIUtilities
getExtraManifestPath() - Static method in class edu.stanford.smi.protege.util.ApplicationProperties
getFacet() - Method in class edu.stanford.smi.protege.event.ClsEvent
getFacet() - Method in class edu.stanford.smi.protege.event.FrameEvent
getFacet() - Method in class edu.stanford.smi.protege.event.KnowledgeBaseEvent
getFacet(String) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getFacet() - Method in class edu.stanford.smi.protege.model.framestore.Record
getFacet() - Method in class edu.stanford.smi.protege.model.framestore.ReferenceImpl
getFacet() - Method in class edu.stanford.smi.protege.model.framestore.Sft
getFacet(String) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getFacet() - Method in interface edu.stanford.smi.protege.model.Reference
getFacet(ResultSet, int, FrameFactory, boolean) - Static method in class edu.stanford.smi.protege.storage.database.DatabaseUtils
getFacetCheckingEnabled() - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getFacetCheckingEnabled() - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreManager
getFacetColor() - Static method in class edu.stanford.smi.protege.resource.Colors
getFacetCount() - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getFacetCount() - Method in class edu.stanford.smi.protege.model.framestore.ArgumentCheckingFrameStore
getFacetCount() - Method in class edu.stanford.smi.protege.model.framestore.ClosureCachingBasicFrameStore
getFacetCount() - Method in interface edu.stanford.smi.protege.model.framestore.FrameStore
getFacetCount() - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreAdapter
getFacetCount() - Method in class edu.stanford.smi.protege.model.framestore.ImmutableNamesNarrowFrameStore
getFacetCount() - Method in class edu.stanford.smi.protege.model.framestore.InMemoryFrameDb
getFacetCount() - Method in class edu.stanford.smi.protege.model.framestore.MergingNarrowFrameStore
getFacetCount() - Method in class edu.stanford.smi.protege.model.framestore.ModificationFrameStore
getFacetCount() - Method in interface edu.stanford.smi.protege.model.framestore.NarrowFrameStore
getFacetCount() - Method in class edu.stanford.smi.protege.model.framestore.PlaceHolderNarrowFrameStore
getFacetCount() - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
getFacetCount() - Method in class edu.stanford.smi.protege.model.framestore.TemplateFrameStore
getFacetCount() - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getFacetCount() - Method in interface edu.stanford.smi.protege.model.Storage
getFacetCount() - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
getFacetCount(RemoteSession) - Method in interface edu.stanford.smi.protege.server.framestore.RemoteServerFrameStore
getFacetCount(RemoteSession) - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
getFacetCount(RemoteSession) - Method in interface edu.stanford.smi.protege.server.narrowframestore.RemoteServerNarrowFrameStore
getFacetCount(RemoteSession) - Method in class edu.stanford.smi.protege.server.narrowframestore.ServerNarrowFrameStore
getFacetCount() - Method in class edu.stanford.smi.protege.storage.database.DefaultDatabaseFrameDb
getFacetCount() - Method in class edu.stanford.smi.protege.storage.database.IdleConnectionNarrowFrameStore
getFacetCount() - Method in class edu.stanford.smi.protege.storage.database.ValueCachingNarrowFrameStore
getFacetIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getFacetIcon(boolean, boolean) - Static method in class edu.stanford.smi.protege.resource.Icons
getFacetImage() - Static method in class edu.stanford.smi.protege.resource.Icons
getFacetJavaClassIds() - Method in interface edu.stanford.smi.protege.model.FrameFactory
getFacetJavaClassIds() - Method in class edu.stanford.smi.protege.model.framestore.DefaultFrameFactory
getFacets() - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getFacets() - Method in class edu.stanford.smi.protege.model.framestore.ArgumentCheckingFrameStore
getFacets() - Method in interface edu.stanford.smi.protege.model.framestore.FrameStore
getFacets() - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreAdapter
getFacets() - Method in class edu.stanford.smi.protege.model.framestore.ModificationFrameStore
getFacets() - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
getFacets() - Method in class edu.stanford.smi.protege.model.framestore.TemplateFrameStore
getFacets() - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getFacets() - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
getFacets(RemoteSession) - Method in interface edu.stanford.smi.protege.server.framestore.RemoteServerFrameStore
getFacets(RemoteSession) - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
getFacetsIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getFactoryClassName() - Method in interface edu.stanford.smi.protege.code.generator.wrapping.JavaCodeGeneratorOptions
getFactoryClassName() - Method in class edu.stanford.smi.protege.code.generator.wrapping.ProjectBasedJavaCodeGeneratorOptions
getFAQURLString() - Static method in class edu.stanford.smi.protege.util.ApplicationProperties
getFbtIcon(FrameWithBrowserText) - Method in class edu.stanford.smi.protege.ui.FrameWithBrowserTextRenderer
getFieldText(DatabaseProperty) - Method in class edu.stanford.smi.protege.storage.database.DatabaseWizardPage
getFileEncoding() - Static method in class edu.stanford.smi.protege.util.SystemUtilities
getFilePath() - Method in class edu.stanford.smi.protege.util.FileField
getFindClsIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getFindFormIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getFindIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getFindInstanceIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getFindSlotIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getFirst(Class) - Method in class edu.stanford.smi.protege.util.DefaultRenderer
getFirst() - Method in class edu.stanford.smi.protege.util.HashList
  Deprecated. Returns the first element in this list.
getFirstClsWidget() - Method in class edu.stanford.smi.protege.ui.InstanceDisplay
getFirstItem(Collection<X>) - Static method in class edu.stanford.smi.protege.util.CollectionUtilities
  Returns the first item in the collection or null if the collection is empty
getFirstItem(Collection) - Static method in class edu.stanford.smi.protege.widget.AbstractSlotWidget
getFirstSelectionParent(JTree) - Static method in class edu.stanford.smi.protege.util.ComponentUtilities
getFirstSelectionParent() - Method in class edu.stanford.smi.protege.widget.AbstractTreeWidget
getFirstServerInstance() - Method in class edu.stanford.smi.protege.server.metaproject.impl.PolicyImpl
getFirstServerInstance() - Method in interface edu.stanford.smi.protege.server.metaproject.Policy
getFirstSlot() - Method in class edu.stanford.smi.protege.model.BrowserSlotPattern
getFooterComponent() - Method in class edu.stanford.smi.protege.server.admin.AbstractRefreshableServerPanel
getFooterComponent() - Method in class edu.stanford.smi.protege.util.LabeledComponent
getFormColor() - Static method in class edu.stanford.smi.protege.resource.Colors
getFormIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getFormIcon(boolean) - Static method in class edu.stanford.smi.protege.resource.Icons
getFormSelectionColor() - Static method in class edu.stanford.smi.protege.resource.Colors
getFormsTree() - Method in class edu.stanford.smi.protege.ui.FormsPanel
getForwardIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getFrame() - Method in class edu.stanford.smi.protege.event.FacetEvent
getFrame() - Method in class edu.stanford.smi.protege.event.FrameEvent
getFrame() - Method in class edu.stanford.smi.protege.event.KnowledgeBaseEvent
getFrame() - Method in class edu.stanford.smi.protege.event.SlotEvent
getFrame(FrameID) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getFrame(String) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getFrame() - Method in class edu.stanford.smi.protege.model.FrameSlotCombination
getFrame(FrameID) - Method in class edu.stanford.smi.protege.model.framestore.ArgumentCheckingFrameStore
getFrame(String) - Method in class edu.stanford.smi.protege.model.framestore.ArgumentCheckingFrameStore
getFrame(FrameID) - Method in class edu.stanford.smi.protege.model.framestore.ClosureCachingBasicFrameStore
getFrame(String) - Method in class edu.stanford.smi.protege.model.framestore.EventGeneratorFrameStore
getFrame(FrameID) - Method in interface edu.stanford.smi.protege.model.framestore.FrameStore
getFrame(String) - Method in interface edu.stanford.smi.protege.model.framestore.FrameStore
getFrame(String) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreAdapter
getFrame(FrameID) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreAdapter
getFrame(FrameID) - Method in class edu.stanford.smi.protege.model.framestore.ImmutableNamesNarrowFrameStore
getFrame(FrameID) - Method in class edu.stanford.smi.protege.model.framestore.InMemoryFrameDb
getFrame(FrameID) - Method in class edu.stanford.smi.protege.model.framestore.MergingNarrowFrameStore
getFrame(FrameID) - Method in class edu.stanford.smi.protege.model.framestore.ModificationFrameStore
getFrame(String) - Method in class edu.stanford.smi.protege.model.framestore.ModificationFrameStore
getFrame(FrameID) - Method in interface edu.stanford.smi.protege.model.framestore.NarrowFrameStore
getFrame(FrameID) - Method in class edu.stanford.smi.protege.model.framestore.PlaceHolderNarrowFrameStore
getFrame() - Method in class edu.stanford.smi.protege.model.framestore.Record
getFrame() - Method in class edu.stanford.smi.protege.model.framestore.ReferenceImpl
getFrame(String) - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
getFrame(FrameID) - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
getFrame(FrameID) - Method in class edu.stanford.smi.protege.model.framestore.TemplateFrameStore
getFrame(String) - Method in class edu.stanford.smi.protege.model.framestore.TemplateFrameStore
getFrame() - Method in class edu.stanford.smi.protege.model.framestore.undo.DeleteFrameCommand
getFrame(String) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getFrame(FrameID) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getFrame() - Method in interface edu.stanford.smi.protege.model.Reference
getFrame(FrameID) - Method in interface edu.stanford.smi.protege.model.Storage
getFrame(String) - Method in interface edu.stanford.smi.protege.model.Storage
getFrame(FrameID) - Method in class edu.stanford.smi.protege.model.SystemFrames
getFrame() - Method in class edu.stanford.smi.protege.server.framestore.background.ClientAndFrame
getFrame() - Method in class edu.stanford.smi.protege.server.framestore.background.WorkInfo
getFrame(String) - Method in class edu.stanford.smi.protege.server.framestore.FrameCalculatorFrameStore
getFrame(FrameID) - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
getFrame(String) - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
getFrame(String, RemoteSession) - Method in interface edu.stanford.smi.protege.server.framestore.RemoteServerFrameStore
getFrame(FrameID, RemoteSession) - Method in interface edu.stanford.smi.protege.server.framestore.RemoteServerFrameStore
getFrame(String, RemoteSession) - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
getFrame(FrameID, RemoteSession) - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
getFrame(FrameID, RemoteSession) - Method in interface edu.stanford.smi.protege.server.narrowframestore.RemoteServerNarrowFrameStore
getFrame(FrameID, RemoteSession) - Method in class edu.stanford.smi.protege.server.narrowframestore.ServerNarrowFrameStore
getFrame() - Method in class edu.stanford.smi.protege.server.update.ValueUpdate
getFrame(ResultSet, int, int, FrameFactory, boolean) - Static method in class edu.stanford.smi.protege.storage.database.DatabaseUtils
getFrame(FrameID) - Method in class edu.stanford.smi.protege.storage.database.DefaultDatabaseFrameDb
getFrame(FrameID, Collection) - Method in class edu.stanford.smi.protege.storage.database.FrameHolder
getFrame(FrameID) - Method in class edu.stanford.smi.protege.storage.database.IdleConnectionNarrowFrameStore
getFrame(FrameID) - Method in class edu.stanford.smi.protege.storage.database.ValueCachingNarrowFrameStore
getFrame() - Method in class edu.stanford.smi.protege.ui.RelationshipPane
getFrame(Component) - Static method in class edu.stanford.smi.protege.util.ComponentUtilities
getFrame() - Method in class edu.stanford.smi.protege.util.FrameWithBrowserText
getFrameCalculator(KnowledgeBase) - Static method in class edu.stanford.smi.protege.server.framestore.background.FrameCalculator
getFrameCalculator() - Method in class edu.stanford.smi.protege.server.framestore.FrameCalculatorFrameStore
getFrameCalculator() - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
GetFrameCalculatorStatisticsJob - Class in edu.stanford.smi.protege.server.job
GetFrameCalculatorStatisticsJob(RemoteServer, RemoteSession, String) - Constructor for class edu.stanford.smi.protege.server.job.GetFrameCalculatorStatisticsJob
getFrameCount() - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getFrameCount() - Method in class edu.stanford.smi.protege.model.framestore.ArgumentCheckingFrameStore
getFrameCount() - Method in class edu.stanford.smi.protege.model.framestore.ClosureCachingBasicFrameStore
getFrameCount() - Method in interface edu.stanford.smi.protege.model.framestore.FrameStore
getFrameCount() - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreAdapter
getFrameCount() - Method in class edu.stanford.smi.protege.model.framestore.ImmutableNamesNarrowFrameStore
getFrameCount() - Method in class edu.stanford.smi.protege.model.framestore.InMemoryFrameDb
getFrameCount() - Method in class edu.stanford.smi.protege.model.framestore.MergingNarrowFrameStore
getFrameCount() - Method in class edu.stanford.smi.protege.model.framestore.ModificationFrameStore
getFrameCount() - Method in interface edu.stanford.smi.protege.model.framestore.NarrowFrameStore
getFrameCount() - Method in class edu.stanford.smi.protege.model.framestore.PlaceHolderNarrowFrameStore
getFrameCount() - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
getFrameCount() - Method in class edu.stanford.smi.protege.model.framestore.TemplateFrameStore
getFrameCount() - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getFrameCount() - Method in interface edu.stanford.smi.protege.model.Storage
getFrameCount() - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
getFrameCount(RemoteSession) - Method in interface edu.stanford.smi.protege.server.framestore.RemoteServerFrameStore
getFrameCount(RemoteSession) - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
getFrameCount(RemoteSession) - Method in interface edu.stanford.smi.protege.server.narrowframestore.RemoteServerNarrowFrameStore
getFrameCount(RemoteSession) - Method in class edu.stanford.smi.protege.server.narrowframestore.ServerNarrowFrameStore
getFrameCount() - Method in class edu.stanford.smi.protege.storage.database.DefaultDatabaseFrameDb
getFrameCount() - Method in class edu.stanford.smi.protege.storage.database.IdleConnectionNarrowFrameStore
getFrameCount() - Method in class edu.stanford.smi.protege.storage.database.ValueCachingNarrowFrameStore
getFrameCounts() - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getFrameCounts() - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getFrameCounts() - Method in class edu.stanford.smi.protege.model.Project
getFrameCreationTimestamp(Frame) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getFrameCreationTimestamp(Frame) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getFrameCreator(Frame) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getFrameCreator(Frame) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getFrameDb() - Method in class edu.stanford.smi.protege.storage.database.ValueCachingNarrowFrameStore
getFrameDbClass(String) - Static method in class edu.stanford.smi.protege.storage.database.DatabaseFrameDbFactory
getFrameFactory() - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getFrameFactory() - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getFrameFactory() - Method in class edu.stanford.smi.protege.storage.database.AbstractDatabaseFrameDb
getFrameID() - Method in class edu.stanford.smi.protege.model.DefaultFrame
getFrameID() - Method in interface edu.stanford.smi.protege.model.Frame
getFrameIDs() - Method in class edu.stanford.smi.protege.model.SystemFrames
getFrameLastModificationTimestamp(Frame) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getFrameLastModificationTimestamp(Frame) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getFrameLastModifier(Frame) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getFrameLastModifier(Frame) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getFrameName(Frame) - Method in class edu.stanford.smi.protege.model.framestore.ArgumentCheckingFrameStore
getFrameName(Frame) - Method in interface edu.stanford.smi.protege.model.framestore.FrameStore
getFrameName(Frame) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreAdapter
getFrameName(Frame) - Method in class edu.stanford.smi.protege.model.framestore.ImmutableNamesFrameStore
getFrameName(Frame) - Method in class edu.stanford.smi.protege.model.framestore.ModificationFrameStore
getFrameName(Frame) - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
getFrameName(Frame) - Method in class edu.stanford.smi.protege.model.framestore.TemplateFrameStore
getFrameName(Frame) - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
getFrameName(Frame, RemoteSession) - Method in interface edu.stanford.smi.protege.server.framestore.RemoteServerFrameStore
getFrameName(Frame, RemoteSession) - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
getFrameNameMatches(String, int) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getFrameNameMatches(String, int) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getFrameNamePrefix() - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getFrameNamePrefix() - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getFrameNames() - Method in class edu.stanford.smi.protege.model.SystemFrames
getFrameNameType() - Method in enum edu.stanford.smi.protege.storage.database.KnownDatabase
getFrameNameType() - Method in class edu.stanford.smi.protege.storage.database.RobustConnection
getFrames() - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getFrames() - Method in class edu.stanford.smi.protege.model.framestore.ArgumentCheckingFrameStore
getFrames(Slot, Facet, boolean, Object) - Method in class edu.stanford.smi.protege.model.framestore.ClosureCachingBasicFrameStore
getFrames() - Method in class edu.stanford.smi.protege.model.framestore.ClosureCachingBasicFrameStore
getFrames() - Method in interface edu.stanford.smi.protege.model.framestore.FrameStore
getFrames() - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreAdapter
getFrames() - Method in class edu.stanford.smi.protege.model.framestore.ImmutableNamesNarrowFrameStore
getFrames(Slot, Facet, boolean, Object) - Method in class edu.stanford.smi.protege.model.framestore.ImmutableNamesNarrowFrameStore
getFrames() - Method in class edu.stanford.smi.protege.model.framestore.InMemoryFrameDb
getFrames(Slot, Facet, boolean, Object) - Method in class edu.stanford.smi.protege.model.framestore.InMemoryFrameDb
getFrames() - Method in class edu.stanford.smi.protege.model.framestore.MergingNarrowFrameStore
getFrames(Slot, Facet, boolean, Object) - Method in class edu.stanford.smi.protege.model.framestore.MergingNarrowFrameStore
getFrames() - Method in class edu.stanford.smi.protege.model.framestore.ModificationFrameStore
getFrames() - Method in interface edu.stanford.smi.protege.model.framestore.NarrowFrameStore
getFrames(Slot, Facet, boolean, Object) - Method in interface edu.stanford.smi.protege.model.framestore.NarrowFrameStore
getFrames() - Method in class edu.stanford.smi.protege.model.framestore.PlaceHolderNarrowFrameStore
getFrames(Slot, Facet, boolean, Object) - Method in class edu.stanford.smi.protege.model.framestore.PlaceHolderNarrowFrameStore
getFrames() - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
getFrames() - Method in class edu.stanford.smi.protege.model.framestore.TemplateFrameStore
getFrames() - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getFrames() - Method in interface edu.stanford.smi.protege.model.Storage
getFrames() - Method in class edu.stanford.smi.protege.model.SystemFrames
getFrames() - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
getFrames(RemoteSession) - Method in interface edu.stanford.smi.protege.server.framestore.RemoteServerFrameStore
getFrames(RemoteSession) - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
getFrames(RemoteSession) - Method in interface edu.stanford.smi.protege.server.narrowframestore.RemoteServerNarrowFrameStore
getFrames(Slot, Facet, boolean, Object, RemoteSession) - Method in interface edu.stanford.smi.protege.server.narrowframestore.RemoteServerNarrowFrameStore
getFrames(RemoteSession) - Method in class edu.stanford.smi.protege.server.narrowframestore.ServerNarrowFrameStore
getFrames(Slot, Facet, boolean, Object, RemoteSession) - Method in class edu.stanford.smi.protege.server.narrowframestore.ServerNarrowFrameStore
getFrames(Slot, Facet, boolean, Object) - Method in class edu.stanford.smi.protege.storage.database.DefaultDatabaseFrameDb
getFrames() - Method in class edu.stanford.smi.protege.storage.database.DefaultDatabaseFrameDb
getFrames() - Method in class edu.stanford.smi.protege.storage.database.IdleConnectionNarrowFrameStore
getFrames(Slot, Facet, boolean, Object) - Method in class edu.stanford.smi.protege.storage.database.IdleConnectionNarrowFrameStore
getFrames() - Method in class edu.stanford.smi.protege.storage.database.ValueCachingNarrowFrameStore
getFrames(Slot, Facet, boolean, Object) - Method in class edu.stanford.smi.protege.storage.database.ValueCachingNarrowFrameStore
getFrames(Collection<FrameWithBrowserText>) - Static method in class edu.stanford.smi.protege.util.FrameWithBrowserText
getFrameStore(String) - Method in class edu.stanford.smi.protege.model.framestore.MergingNarrowFrameStore
getFrameStoreFromClass(Class<? extends X>) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreManager
getFrameStoreManager() - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getFrameStoreManager() - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getFrameStores() - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getFrameStores() - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreManager
getFrameStores() - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
  Returns a list of FrameStores available to the system.
getFramesWithAnyDirectOwnSlotValue(Slot) - Method in class edu.stanford.smi.protege.model.framestore.ArgumentCheckingFrameStore
getFramesWithAnyDirectOwnSlotValue(Slot) - Method in interface edu.stanford.smi.protege.model.framestore.FrameStore
getFramesWithAnyDirectOwnSlotValue(Slot) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreAdapter
getFramesWithAnyDirectOwnSlotValue(Slot) - Method in class edu.stanford.smi.protege.model.framestore.ModificationFrameStore
getFramesWithAnyDirectOwnSlotValue(Slot) - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
getFramesWithAnyDirectOwnSlotValue(Slot) - Method in class edu.stanford.smi.protege.model.framestore.TemplateFrameStore
getFramesWithAnyDirectOwnSlotValue(Slot) - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
getFramesWithAnyDirectOwnSlotValue(Slot, RemoteSession) - Method in interface edu.stanford.smi.protege.server.framestore.RemoteServerFrameStore
getFramesWithAnyDirectOwnSlotValue(Slot, RemoteSession) - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
getFramesWithAnyValue(Slot, Facet, boolean) - Method in class edu.stanford.smi.protege.model.framestore.ClosureCachingBasicFrameStore
getFramesWithAnyValue(Slot, Facet, boolean) - Method in class edu.stanford.smi.protege.model.framestore.ImmutableNamesNarrowFrameStore
getFramesWithAnyValue(Slot, Facet, boolean) - Method in class edu.stanford.smi.protege.model.framestore.InMemoryFrameDb
getFramesWithAnyValue(Slot, Facet, boolean) - Method in class edu.stanford.smi.protege.model.framestore.MergingNarrowFrameStore
getFramesWithAnyValue(Slot, Facet, boolean) - Method in interface edu.stanford.smi.protege.model.framestore.NarrowFrameStore
getFramesWithAnyValue(Slot, Facet, boolean) - Method in class edu.stanford.smi.protege.model.framestore.PlaceHolderNarrowFrameStore
getFramesWithAnyValue(Slot, Facet, boolean, RemoteSession) - Method in interface edu.stanford.smi.protege.server.narrowframestore.RemoteServerNarrowFrameStore
getFramesWithAnyValue(Slot, Facet, boolean, RemoteSession) - Method in class edu.stanford.smi.protege.server.narrowframestore.ServerNarrowFrameStore
getFramesWithAnyValue(Slot, Facet, boolean) - Method in class edu.stanford.smi.protege.storage.database.DefaultDatabaseFrameDb
getFramesWithAnyValue(Slot, Facet, boolean) - Method in class edu.stanford.smi.protege.storage.database.IdleConnectionNarrowFrameStore
getFramesWithAnyValue(Slot, Facet, boolean) - Method in class edu.stanford.smi.protege.storage.database.ValueCachingNarrowFrameStore
getFramesWithBrowserText(Collection<? extends Frame>) - Static method in class edu.stanford.smi.protege.util.FrameWithBrowserText
getFramesWithDirectOwnSlotValue(Slot, Object) - Method in class edu.stanford.smi.protege.model.framestore.ArgumentCheckingFrameStore
getFramesWithDirectOwnSlotValue(Slot, Object) - Method in interface edu.stanford.smi.protege.model.framestore.FrameStore
getFramesWithDirectOwnSlotValue(Slot, Object) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreAdapter
getFramesWithDirectOwnSlotValue(Slot, Object) - Method in class edu.stanford.smi.protege.model.framestore.ModificationFrameStore
getFramesWithDirectOwnSlotValue(Slot, Object) - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
getFramesWithDirectOwnSlotValue(Slot, Object) - Method in class edu.stanford.smi.protege.model.framestore.TemplateFrameStore
getFramesWithDirectOwnSlotValue(Slot, Object) - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
getFramesWithDirectOwnSlotValue(Slot, Object, RemoteSession) - Method in interface edu.stanford.smi.protege.server.framestore.RemoteServerFrameStore
getFramesWithDirectOwnSlotValue(Slot, Object, RemoteSession) - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
getFramesWithMatchingDirectOwnSlotValue(Slot, String, int) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getFramesWithMatchingDirectOwnSlotValue(Slot, String, int) - Method in class edu.stanford.smi.protege.model.framestore.ArgumentCheckingFrameStore
getFramesWithMatchingDirectOwnSlotValue(Slot, String, int) - Method in interface edu.stanford.smi.protege.model.framestore.FrameStore
getFramesWithMatchingDirectOwnSlotValue(Slot, String, int) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreAdapter
getFramesWithMatchingDirectOwnSlotValue(Slot, String, int) - Method in class edu.stanford.smi.protege.model.framestore.ModificationFrameStore
getFramesWithMatchingDirectOwnSlotValue(Slot, String, int) - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
getFramesWithMatchingDirectOwnSlotValue(Slot, String, int) - Method in class edu.stanford.smi.protege.model.framestore.TemplateFrameStore
getFramesWithMatchingDirectOwnSlotValue(Slot, String, int) - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
getFramesWithMatchingDirectOwnSlotValue(Slot, String, int, RemoteSession) - Method in interface edu.stanford.smi.protege.server.framestore.RemoteServerFrameStore
getFramesWithMatchingDirectOwnSlotValue(Slot, String, int, RemoteSession) - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
getFramesWithValue(Slot, Facet, boolean, Object) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getFramesWithValue(Slot, Facet, boolean, Object) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
  Gets frames with a particular own/template slot/facet value.
getFramesWithValue(Slot, Facet, boolean, Object) - Method in interface edu.stanford.smi.protege.model.Storage
getFrameValues(Frame) - Method in interface edu.stanford.smi.protege.storage.database.DatabaseFrameDb
getFrameValues() - Method in class edu.stanford.smi.protege.storage.database.DefaultDatabaseFrameDb
getFrameValues(Frame) - Method in class edu.stanford.smi.protege.storage.database.DefaultDatabaseFrameDb
getFrameWithBrowserText(Frame) - Static method in class edu.stanford.smi.protege.util.FrameWithBrowserText
getFriendlyName(Frame) - Static method in class edu.stanford.smi.protege.util.StringUtilities
getFromSlot() - Method in class edu.stanford.smi.protege.model.SystemFrames
getFullName() - Method in class edu.stanford.smi.protege.util.PathSplitter
getGenerateEventsEnabled() - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getGenerateEventsEnabled() - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreManager
getGenerateEventsEnabled() - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getGettingStartedURLString() - Static method in class edu.stanford.smi.protege.util.ApplicationProperties
getGroup(String) - Method in class edu.stanford.smi.protege.server.metaproject.impl.MetaProjectImpl
getGroup(String) - Method in interface edu.stanford.smi.protege.server.metaproject.MetaProject
getGroupOperations() - Method in class edu.stanford.smi.protege.server.metaproject.impl.MetaProjectImpl
getGroupOperations() - Method in interface edu.stanford.smi.protege.server.metaproject.MetaProject
getGroups() - Method in class edu.stanford.smi.protege.server.metaproject.impl.MetaProjectImpl
getGroups() - Method in class edu.stanford.smi.protege.server.metaproject.impl.UserImpl
getGroups() - Method in interface edu.stanford.smi.protege.server.metaproject.MetaProject
getGroups() - Method in interface edu.stanford.smi.protege.server.metaproject.User
getHash(Object, Object) - Static method in class edu.stanford.smi.protege.util.HashUtils
getHash(int, int) - Static method in class edu.stanford.smi.protege.util.HashUtils
getHash(Object, Object[]) - Static method in class edu.stanford.smi.protege.util.HashUtils
getHash(Object, Object, boolean) - Static method in class edu.stanford.smi.protege.util.HashUtils
getHash(Object, Object, Object) - Static method in class edu.stanford.smi.protege.util.HashUtils
getHash(Object, Object, Object, boolean) - Static method in class edu.stanford.smi.protege.util.HashUtils
getHeaderButtonActions() - Method in class edu.stanford.smi.protege.util.LabeledComponent
getHeaderButtons() - Method in class edu.stanford.smi.protege.util.LabeledComponent
getHeaderComponent() - Method in class edu.stanford.smi.protege.ui.InstanceDisplay
getHeaderComponent() - Method in class edu.stanford.smi.protege.util.LabeledComponent
getHeaderLabel() - Method in class edu.stanford.smi.protege.ui.InstanceDisplay
getHeaderLabel() - Method in class edu.stanford.smi.protege.util.LabeledComponent
getHeadFrameStore() - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getHeadFrameStore() - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreManager
getHelper() - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
getHiddenFrames() - Method in class edu.stanford.smi.protege.model.Project
getHierarchyCollapsedIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getHierarchyExpandedIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getHomeIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getHooks() - Method in class edu.stanford.smi.protege.model.framestore.DeletionHookFrameStore
getHooks(KnowledgeBase) - Static method in class edu.stanford.smi.protege.util.DeletionHookUtil
getHorizontalStretcher() - Method in class edu.stanford.smi.protege.widget.FormWidget
getHostName() - Method in class edu.stanford.smi.protege.server.metaproject.impl.ServerInstanceImpl
getHostName() - Method in interface edu.stanford.smi.protege.server.metaproject.ServerInstance
getHowToCiteProtegeURLString() - Static method in class edu.stanford.smi.protege.util.ApplicationProperties
getIcon() - Method in class edu.stanford.smi.protege.model.DefaultCls
getIcon() - Method in class edu.stanford.smi.protege.model.DefaultFacet
getIcon() - Method in class edu.stanford.smi.protege.model.DefaultFrame
getIcon() - Method in class edu.stanford.smi.protege.model.DefaultSimpleInstance
getIcon() - Method in class edu.stanford.smi.protege.model.DefaultSlot
getIcon() - Method in interface edu.stanford.smi.protege.model.Frame
getIcon(ResourceKey) - Static method in class edu.stanford.smi.protege.resource.Icons
getIcon(Cls) - Method in class edu.stanford.smi.protege.ui.FrameRenderer
getIcon() - Method in class edu.stanford.smi.protege.util.StandardAction
getIcon() - Method in class edu.stanford.smi.protege.widget.AbstractTabWidget
getIcon() - Method in interface edu.stanford.smi.protege.widget.TabWidget
getIconIconGap() - Method in class edu.stanford.smi.protege.util.DefaultRenderer
getIconName() - Method in class edu.stanford.smi.protege.util.FrameWithBrowserText
getIconTextGap() - Method in class edu.stanford.smi.protege.util.DefaultRenderer
getId() - Method in interface edu.stanford.smi.protege.server.RemoteSession
getId() - Method in class edu.stanford.smi.protege.server.Session
getId() - Method in class edu.stanford.smi.protege.storage.database.pool.ConnectionInfo
getId(Connection) - Method in class edu.stanford.smi.protege.storage.database.pool.ConnectionPool
getIdle() - Method in class edu.stanford.smi.protege.storage.database.RobustConnection
GetImage() - Method in class edu.stanford.smi.protege.storage.clips.SimpleCharStream
  Get token literal value.
getImplementationClass(Collection, Class) - Method in class edu.stanford.smi.protege.model.framestore.DefaultFrameFactory
getImplementationFile(Cls) - Method in class edu.stanford.smi.protege.code.generator.wrapping.JavaCodeGenerator
getImplementationName(Cls) - Method in class edu.stanford.smi.protege.code.generator.wrapping.JavaCodeGenerator
getImplementationNamePossiblyAbstract(Cls) - Method in class edu.stanford.smi.protege.code.generator.wrapping.JavaCodeGenerator
getIncludedClsCount() - Method in interface edu.stanford.smi.protege.model.FrameCounts
getIncludedClsCount() - Method in class edu.stanford.smi.protege.model.FrameCountsImpl
getIncludedFacetCount() - Method in interface edu.stanford.smi.protege.model.FrameCounts
getIncludedFacetCount() - Method in class edu.stanford.smi.protege.model.FrameCountsImpl
getIncludedFrameCount() - Method in interface edu.stanford.smi.protege.model.FrameCounts
getIncludedFrameCount() - Method in class edu.stanford.smi.protege.model.FrameCountsImpl
getIncludedProjects() - Method in class edu.stanford.smi.protege.model.KnowledgeBaseSourcesEditor
getIncludedProjects() - Method in class edu.stanford.smi.protege.model.Project
getIncludedSimpleInstanceCount() - Method in interface edu.stanford.smi.protege.model.FrameCounts
getIncludedSimpleInstanceCount() - Method in class edu.stanford.smi.protege.model.FrameCountsImpl
getIncludedSlotCount() - Method in interface edu.stanford.smi.protege.model.FrameCounts
getIncludedSlotCount() - Method in class edu.stanford.smi.protege.model.FrameCountsImpl
getInCollection() - Method in class edu.stanford.smi.protege.server.metaproject.impl.PolicyControlledObjectImpl
getInCollection() - Method in interface edu.stanford.smi.protege.server.metaproject.PolicyControlledObject
getIndex(ResultSet, int) - Static method in class edu.stanford.smi.protege.storage.database.DatabaseUtils
getIndex(Object) - Method in class edu.stanford.smi.protege.util.LazyTreeNode
getIndex(TreeNode) - Method in class edu.stanford.smi.protege.util.LazyTreeNode
getInformedUserOfLongConnectionTime() - Method in class edu.stanford.smi.protege.storage.database.pool.ConnectionInfo
getInheritedBrowserSlot() - Method in interface edu.stanford.smi.protege.model.Cls
  Deprecated.
getInheritedBrowserSlot() - Method in class edu.stanford.smi.protege.model.DefaultCls
  Deprecated. Use #getInheritedBrowserSlotPattern
getInheritedBrowserSlot(Cls) - Method in class edu.stanford.smi.protege.model.Project
  Deprecated. Use `Project.getInheritedBrowserSlotPattern(Cls)`
getInheritedBrowserSlotPattern() - Method in interface edu.stanford.smi.protege.model.Cls
getInheritedBrowserSlotPattern() - Method in class edu.stanford.smi.protege.model.DefaultCls
getInheritedBrowserSlotPattern(Cls) - Method in class edu.stanford.smi.protege.model.Project
getInheritedTemplateSlots(Cls) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getInitialExportClses() - Method in class edu.stanford.smi.protege.action.ExportToCsvAction
getInitialState() - Method in interface edu.stanford.smi.protege.server.framestore.background.ServerCacheStateMachine
getInnerCallback() - Method in class edu.stanford.smi.protege.model.query.QueryCallbackClone
getInputStream() - Method in class edu.stanford.smi.protege.server.socket.CompressionAspect
getInputStream() - Method in class edu.stanford.smi.protege.server.socket.MonitoringAspect
getInputStream() - Method in class edu.stanford.smi.protege.server.socket.SimulateDelayAspect
getInputStream() - Method in interface edu.stanford.smi.protege.server.socket.SocketAspect
getInputStream() - Method in class edu.stanford.smi.protege.server.socket.SocketWithAspects
getInputStream() - Method in class edu.stanford.smi.protege.server.socket.TeeAspect
getInputStream() - Method in class edu.stanford.smi.protege.server.util.ZipSocket
getInstallationDirectory(String) - Static method in class edu.stanford.smi.protege.plugin.PluginUtilities
getInstance() - Method in class edu.stanford.smi.protege.event.ClsEvent
getInstance() - Method in class edu.stanford.smi.protege.event.InstanceEvent
getInstance(String) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getInstance(Class, KnowledgeBase) - Static method in class edu.stanford.smi.protege.model.framestore.AbstractFrameStoreInvocationHandler
getInstance(String) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getInstance() - Method in class edu.stanford.smi.protege.model.WidgetDescriptor
getInstance() - Static method in class edu.stanford.smi.protege.server.RemoteProjectManager
getInstance() - Static method in class edu.stanford.smi.protege.server.Server
getInstance() - Method in class edu.stanford.smi.protege.ui.InstanceField
getInstance() - Static method in class edu.stanford.smi.protege.util.FloatValidator
getInstance() - Static method in class edu.stanford.smi.protege.util.IntegerValidator
getInstance() - Method in class edu.stanford.smi.protege.widget.AbstractClsWidget
getInstance() - Method in class edu.stanford.smi.protege.widget.AbstractSlotWidget
getInstance() - Method in interface edu.stanford.smi.protege.widget.ClsWidget
getInstance() - Method in interface edu.stanford.smi.protege.widget.SlotWidget
getInstanceAnnotationCls() - Method in class edu.stanford.smi.protege.model.SystemFrames
getInstanceColor() - Static method in class edu.stanford.smi.protege.resource.Colors
getInstanceCopyIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getInstanceCount() - Method in interface edu.stanford.smi.protege.model.Cls
getInstanceCount() - Method in class edu.stanford.smi.protege.model.DefaultCls
getInstanceCount(Cls) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getInstanceCount(Cls) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getInstanceCountString(Cls) - Method in class edu.stanford.smi.protege.ui.FrameRenderer
getInstanceHideNoteIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getInstanceIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getInstanceIcon(boolean, boolean) - Static method in class edu.stanford.smi.protege.resource.Icons
getInstanceImage() - Static method in class edu.stanford.smi.protege.resource.Icons
getInstanceModel() - Method in class edu.stanford.smi.protege.ui.SelectInstancesPanel
getInstanceNoteIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getInstances() - Method in interface edu.stanford.smi.protege.model.Cls
getInstances() - Method in class edu.stanford.smi.protege.model.DefaultCls
getInstances() - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getInstances(Cls) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
  Deprecated.
getInstances(Cls) - Method in class edu.stanford.smi.protege.model.framestore.ArgumentCheckingFrameStore
getInstances(Cls) - Method in interface edu.stanford.smi.protege.model.framestore.FrameStore
getInstances(Cls) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreAdapter
getInstances(Cls) - Method in class edu.stanford.smi.protege.model.framestore.ModificationFrameStore
getInstances(Cls) - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
getInstances(Cls) - Method in class edu.stanford.smi.protege.model.framestore.TemplateFrameStore
getInstances() - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getInstances(Cls) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getInstances(Cls) - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
getInstances(Cls, RemoteSession) - Method in interface edu.stanford.smi.protege.server.framestore.RemoteServerFrameStore
getInstances(Cls, RemoteSession) - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
getInstances(Cls) - Method in class edu.stanford.smi.protege.ui.SelectInstancesPanel
GetInstancesAndBrowserTextJob - Class in edu.stanford.smi.protege.util
  Protege Job for getting the instances and their browser text from the server.
GetInstancesAndBrowserTextJob(KnowledgeBase, Collection<Cls>, boolean) - Constructor for class edu.stanford.smi.protege.util.GetInstancesAndBrowserTextJob
getInstancesComparator() - Method in class edu.stanford.smi.protege.ui.SelectInstancesPanel
getInstanceSelectionColor() - Static method in class edu.stanford.smi.protege.resource.Colors
getInstancesFileName() - Method in class edu.stanford.smi.protege.storage.clips.ClipsFilePanel
getInstancesIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getInstancesSourceFile(PropertyList) - Static method in class edu.stanford.smi.protege.storage.clips.ClipsKnowledgeBaseFactory
getInstancesSourceReader(KnowledgeBase, PropertyList, Collection) - Method in class edu.stanford.smi.protege.storage.clips.ClipsKnowledgeBaseFactory
getInstancesSourceRelativeURI(PropertyList) - Static method in class edu.stanford.smi.protege.storage.clips.ClipsKnowledgeBaseFactory
getInstancesToExport() - Method in class edu.stanford.smi.protege.action.ExportToCsvAction
getInstanceValueJavaTypeName() - Method in class edu.stanford.smi.protege.code.generator.wrapping.SlotAtClassCode
getInteger(String) - Method in class edu.stanford.smi.protege.util.PropertyList
getIntegerProperty(String, int) - Static method in class edu.stanford.smi.protege.util.ApplicationProperties
getIntegerTypeName() - Method in class edu.stanford.smi.protege.storage.database.RobustConnection
getInterfaceFile(Cls) - Method in class edu.stanford.smi.protege.code.generator.wrapping.JavaCodeGenerator
getInterfaceName(Cls) - Method in class edu.stanford.smi.protege.code.generator.wrapping.JavaCodeGenerator
getInterfaceNamePossiblyAbstract(Cls) - Method in class edu.stanford.smi.protege.code.generator.wrapping.JavaCodeGenerator
getInternalProjectKnowledgeBase() - Method in class edu.stanford.smi.protege.model.Project
getInternalValues() - Method in class edu.stanford.smi.protege.model.framestore.Record
getIntType() - Method in enum edu.stanford.smi.protege.storage.database.KnownDatabase
getIntValue() - Method in class edu.stanford.smi.protege.model.ValueType
getInvalid() - Static method in class edu.stanford.smi.protege.util.transaction.cache.CacheResult
getInvalidFrameNameDescription(String, Frame) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getInvalidFrameNameDescription(String, Frame) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getInvalidOwnSlotValuesText(Slot, Collection) - Method in class edu.stanford.smi.protege.model.DefaultFrame
getInvalidOwnSlotValuesText(Frame, Slot, Collection) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getInvalidOwnSlotValuesText(Slot, Collection) - Method in interface edu.stanford.smi.protege.model.Frame
getInvalidOwnSlotValuesText(Frame, Slot, Collection) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getInvalidOwnSlotValueText(Slot, Object) - Method in class edu.stanford.smi.protege.model.DefaultFrame
getInvalidOwnSlotValueText(Frame, Slot, Object) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getInvalidOwnSlotValueText(Slot, Object) - Method in interface edu.stanford.smi.protege.model.Frame
getInvalidOwnSlotValueText(Frame, Slot, Object) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getInvalidTextDescription(String) - Method in class edu.stanford.smi.protege.widget.FloatFieldWidget
getInvalidTextDescription(String) - Method in class edu.stanford.smi.protege.widget.InstanceNameWidget
getInvalidTextDescription(String) - Method in class edu.stanford.smi.protege.widget.IntegerFieldWidget
getInvalidTextDescription(String) - Method in class edu.stanford.smi.protege.widget.TextComponentWidget
getInvalidTextDescription(String) - Method in class edu.stanford.smi.protege.widget.UniqueStringWidget
getInvalidValuesText(Frame, Slot, Collection) - Method in class edu.stanford.smi.protege.model.DefaultFacet
getInvalidValuesText(Frame, Slot, Collection, Collection) - Method in class edu.stanford.smi.protege.model.DefaultValuesConstraint
getInvalidValuesText(Frame, Slot, Collection) - Method in interface edu.stanford.smi.protege.model.Facet
getInvalidValuesText(Frame, Slot, Collection, Collection) - Method in interface edu.stanford.smi.protege.model.FacetConstraint
getInvalidValuesText(Frame, Slot, Collection, Collection) - Method in class edu.stanford.smi.protege.model.MaximumCardinalityConstraint
getInvalidValuesText(Frame, Slot, Collection, Collection) - Method in class edu.stanford.smi.protege.model.MinimumCardinalityConstraint
getInvalidValuesText(Frame, Slot, Collection, Collection) - Method in class edu.stanford.smi.protege.model.NumericMaximumConstraint
getInvalidValuesText(Frame, Slot, Collection, Collection) - Method in class edu.stanford.smi.protege.model.NumericMinimumConstraint
getInvalidValuesText(Frame, Slot, Collection, Collection) - Method in class edu.stanford.smi.protege.model.ValueTypeConstraint
getInvalidValueText(Frame, Slot, Object) - Method in class edu.stanford.smi.protege.model.DefaultFacet
getInvalidValueText(Frame, Slot, Object, Collection) - Method in class edu.stanford.smi.protege.model.DefaultValuesConstraint
getInvalidValueText(Frame, Slot, Object) - Method in interface edu.stanford.smi.protege.model.Facet
getInvalidValueText(Frame, Slot, Object, Collection) - Method in interface edu.stanford.smi.protege.model.FacetConstraint
getInvalidValueText(Frame, Slot, Object, Collection) - Method in class edu.stanford.smi.protege.model.MaximumCardinalityConstraint
getInvalidValueText(Frame, Slot, Object, Collection) - Method in class edu.stanford.smi.protege.model.MinimumCardinalityConstraint
getInvalidValueText(Frame, Slot, Object, Collection) - Method in class edu.stanford.smi.protege.model.NumericMaximumConstraint
getInvalidValueText(Frame, Slot, Object, Collection) - Method in class edu.stanford.smi.protege.model.NumericMinimumConstraint
getInvalidValueText(Frame, Slot, Object, Collection) - Method in class edu.stanford.smi.protege.model.ValueTypeConstraint
getInvalidValueText(Collection) - Method in class edu.stanford.smi.protege.widget.AbstractSlotWidget
getInverseFacet() - Method in class edu.stanford.smi.protege.model.SystemFrames
getInverseSlot(Slot) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getInverseSlot() - Method in class edu.stanford.smi.protege.model.DefaultSlot
getInverseSlot(Slot) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getInverseSlot() - Method in interface edu.stanford.smi.protege.model.Slot
getInverseSlotSlot() - Method in class edu.stanford.smi.protege.model.SystemFrames
getIsTemplate(ResultSet, int) - Static method in class edu.stanford.smi.protege.storage.database.DatabaseUtils
getIsTemplateValue(boolean) - Static method in class edu.stanford.smi.protege.storage.database.DatabaseUtils
getJavaClassId(Frame) - Method in interface edu.stanford.smi.protege.model.FrameFactory
getJavaClassId(Frame) - Method in class edu.stanford.smi.protege.model.framestore.DefaultFrameFactory
getJavaClassName(Cls) - Method in class edu.stanford.smi.protege.model.framestore.DefaultFrameFactory
getJavaName() - Method in class edu.stanford.smi.protege.code.generator.wrapping.ClsCode
getJavaName() - Method in class edu.stanford.smi.protege.code.generator.wrapping.SlotAtClassCode
getJavaName() - Method in class edu.stanford.smi.protege.code.generator.wrapping.SlotCode
getJavaObjectAs(KnowledgeBase, String, Class<? extends X>) - Static method in class edu.stanford.smi.protege.code.generator.wrapping.OntologyJavaMappingUtil
getJavaType() - Method in class edu.stanford.smi.protege.code.generator.wrapping.SlotAtClassCode
getJavaType(boolean) - Method in class edu.stanford.smi.protege.code.generator.wrapping.SlotAtClassCode
getJavaType() - Method in class edu.stanford.smi.protege.model.ValueType
getJdbcLevel() - Method in enum edu.stanford.smi.protege.util.transaction.TransactionIsolationLevel
getJournalURI() - Method in class edu.stanford.smi.protege.model.Project
getKeys() - Method in class edu.stanford.smi.protege.util.MultiMap
getKiloBytesPerSecondDownload() - Static method in class edu.stanford.smi.protege.server.ServerProperties
getKiloBytesPerSecondUpload() - Static method in class edu.stanford.smi.protege.server.ServerProperties
getKnowledgeBase() - Method in class edu.stanford.smi.protege.action.ExportToCsvAction
getKnowledgeBase() - Static method in class edu.stanford.smi.protege.action.ProjectAction
getKnowledgeBase() - Method in class edu.stanford.smi.protege.code.generator.wrapping.AbstractWrappedInstance
getKnowledgeBase() - Method in class edu.stanford.smi.protege.event.TransactionEvent
getKnowledgeBase() - Method in class edu.stanford.smi.protege.model.DefaultFrame
getKnowledgeBase() - Method in interface edu.stanford.smi.protege.model.Frame
getKnowledgeBase() - Method in class edu.stanford.smi.protege.model.framestore.DefaultFrameFactory
getKnowledgeBase() - Method in class edu.stanford.smi.protege.model.Project
getKnowledgeBase() - Method in class edu.stanford.smi.protege.model.Transaction
getKnowledgeBase() - Method in class edu.stanford.smi.protege.server.metaproject.impl.MetaProjectImpl
getKnowledgeBase() - Method in class edu.stanford.smi.protege.ui.ClsesPanel
getKnowledgeBase() - Method in class edu.stanford.smi.protege.ui.FrameTreeFinder
getKnowledgeBase() - Method in class edu.stanford.smi.protege.util.PropertyList
getKnowledgeBase() - Method in class edu.stanford.smi.protege.util.ProtegeJob
  Returns the knowledge base associated with this job.
getKnowledgeBase() - Method in class edu.stanford.smi.protege.widget.AbstractWidget
getKnowledgeBase() - Method in interface edu.stanford.smi.protege.widget.Widget
getKnowledgeBaseFactory() - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getKnowledgeBaseFactory() - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getKnowledgeBaseFactory() - Method in class edu.stanford.smi.protege.model.Project
getKnowledgeBaseFactory() - Method in class edu.stanford.smi.protege.server.RemoteClientProject
getKnownDatabaseType() - Method in class edu.stanford.smi.protege.storage.database.RobustConnection
getKnownOperations() - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
getKnownOperations(RemoteSession) - Method in interface edu.stanford.smi.protege.server.framestore.RemoteServerFrameStore
getKnownOperations(RemoteSession) - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
getKnownOperations() - Method in class edu.stanford.smi.protege.server.metaproject.impl.PolicyImpl
getKnownOperations() - Method in interface edu.stanford.smi.protege.server.metaproject.Policy
getLabel() - Method in class edu.stanford.smi.protege.model.WidgetDescriptor
getLabel() - Method in class edu.stanford.smi.protege.widget.AbstractSlotWidget
getLabel() - Method in class edu.stanford.smi.protege.widget.AbstractTabWidget
getLabel() - Method in class edu.stanford.smi.protege.widget.AbstractWidget
getLabel() - Method in class edu.stanford.smi.protege.widget.ConstraintsWidget
getLabel() - Method in class edu.stanford.smi.protege.widget.DefaultValuesWidget
getLabel() - Method in class edu.stanford.smi.protege.widget.DirectDomainWidget
getLabel() - Method in class edu.stanford.smi.protege.widget.DirectInstancesWidget
getLabel() - Method in class edu.stanford.smi.protege.widget.DirectTypesWidget
getLabel() - Method in class edu.stanford.smi.protege.widget.DocumentationWidget
getLabel() - Method in class edu.stanford.smi.protege.widget.FormWidget
getLabel() - Method in class edu.stanford.smi.protege.widget.GeneralWidgetConfigurationPanel
getLabel() - Method in class edu.stanford.smi.protege.widget.InstanceNameWidget
getLabel() - Method in class edu.stanford.smi.protege.widget.InverseSlotWidget
getLabel() - Method in class edu.stanford.smi.protege.widget.MinimumCardinalityWidget
getLabel() - Method in class edu.stanford.smi.protege.widget.NumericMaximumWidget
getLabel() - Method in class edu.stanford.smi.protege.widget.NumericMinimumWidget
getLabel() - Method in class edu.stanford.smi.protege.widget.RoleWidget
getLabel() - Method in class edu.stanford.smi.protege.widget.SlotValuesWidget
getLabel() - Method in class edu.stanford.smi.protege.widget.SubclassWidget
getLabel() - Method in class edu.stanford.smi.protege.widget.SuperclassWidget
getLabel() - Method in class edu.stanford.smi.protege.widget.TemplateSlotsWidget
getLabel() - Method in class edu.stanford.smi.protege.widget.UglyClsWidget
getLabel() - Method in class edu.stanford.smi.protege.widget.UglySlotWidget
getLabel() - Method in class edu.stanford.smi.protege.widget.ValueTypeWidget
getLabel() - Method in interface edu.stanford.smi.protege.widget.Widget
getLabeledComponent() - Method in class edu.stanford.smi.protege.ui.ClsesPanel
getLabeledComponent() - Method in class edu.stanford.smi.protege.ui.FormsPanel
getLabeledComponent() - Method in class edu.stanford.smi.protege.ui.SubslotPane
getLabeledComponent() - Method in class edu.stanford.smi.protege.widget.AbstractListWidget
getLabeledComponent() - Method in class edu.stanford.smi.protege.widget.ClsesTab
getLabeledComponent() - Method in class edu.stanford.smi.protege.widget.FormsTab
getLabeledComponent() - Method in class edu.stanford.smi.protege.widget.InstanceClsesPanel
getLabeledComponent() - Method in class edu.stanford.smi.protege.widget.InstancesTab
getLabeledComponent() - Method in class edu.stanford.smi.protege.widget.SlotsTab
getLast() - Method in class edu.stanford.smi.protege.util.HashList
  Deprecated. Returns the last element in this list.
getLastAccess() - Method in class edu.stanford.smi.protege.server.metaproject.impl.UserImpl
getLastAccess() - Method in interface edu.stanford.smi.protege.server.metaproject.User
getLastAccessTime() - Method in class edu.stanford.smi.protege.storage.database.pool.ConnectionInfo
  Synchronized by the connection pool.
getLastDropSucceeded() - Static method in class edu.stanford.smi.protege.util.TreeTarget
getLastFileDirectory() - Static method in class edu.stanford.smi.protege.util.ApplicationProperties
getLastHeartbeat() - Method in class edu.stanford.smi.protege.server.framestore.Registration
getLastLoadeURI() - Static method in class edu.stanford.smi.protege.util.ApplicationProperties
getLastLogin() - Method in class edu.stanford.smi.protege.server.metaproject.impl.UserImpl
getLastLogin() - Method in interface edu.stanford.smi.protege.server.metaproject.User
getLayoutAlignmentX(Container) - Method in class edu.stanford.smi.protege.util.ResizingLayout
getLayoutAlignmentY(Container) - Method in class edu.stanford.smi.protege.util.ResizingLayout
getLayoutLikeOtherFormIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getLazyTreeNodeParent() - Method in class edu.stanford.smi.protege.util.LazyTreeNode
getLine() - Method in class edu.stanford.smi.protege.storage.clips.SimpleCharStream
  Deprecated.
getLineSeparator() - Static method in class edu.stanford.smi.protege.util.AbstractFormatter
getLineSeparator() - Static method in class edu.stanford.smi.protege.util.SystemUtilities
getList() - Method in class edu.stanford.smi.protege.util.SimpleListModel
getList() - Method in class edu.stanford.smi.protege.widget.AbstractListWidget
getListCellRendererComponent(JList, Object, int, boolean, boolean) - Method in class edu.stanford.smi.protege.util.DefaultRenderer
getListeners(Class<?>, Object) - Method in class edu.stanford.smi.protege.model.framestore.EventDispatchFrameStore
getListeners(Object) - Method in class edu.stanford.smi.protege.util.ListenerCollection
getListeners(Object) - Method in class edu.stanford.smi.protege.util.ListenerList
getListeners(Object) - Method in class edu.stanford.smi.protege.util.ListenerMap
getListValues(JList) - Static method in class edu.stanford.smi.protege.util.ComponentUtilities
getLiveWidgetDescriptors() - Method in class edu.stanford.smi.protege.util.PropertyList
getLoadAction() - Method in class edu.stanford.smi.protege.widget.ProtegePropertiesComponent
getLoadingURI() - Method in class edu.stanford.smi.protege.model.Project
getLocalBoundName() - Static method in class edu.stanford.smi.protege.server.Server
getLocale() - Static method in class edu.stanford.smi.protege.util.ApplicationProperties
getLocalUser() - Method in class edu.stanford.smi.protege.model.Project
getLocalUser() - Method in class edu.stanford.smi.protege.server.RemoteClientProject
getLocation() - Method in class edu.stanford.smi.protege.model.WidgetDescriptor
getLocation() - Method in class edu.stanford.smi.protege.server.metaproject.impl.ProjectInstanceImpl
getLocation() - Method in interface edu.stanford.smi.protege.server.metaproject.ProjectInstance
getLogFileDirectory() - Static method in class edu.stanford.smi.protege.util.ApplicationProperties
getLogger() - Static method in class edu.stanford.smi.protege.util.Log
getLogger(Class) - Static method in class edu.stanford.smi.protege.util.Log
getLogo() - Static method in class edu.stanford.smi.protege.resource.Icons
getLogoBannerIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getLogoIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getLogoSplashIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getLongStringType() - Method in enum edu.stanford.smi.protege.storage.database.KnownDatabase
getLongValue(ResultSet, int) - Static method in class edu.stanford.smi.protege.storage.database.DatabaseUtils
getLongvarcharTypeName() - Method in class edu.stanford.smi.protege.storage.database.RobustConnection
getLookAndFeelClassName() - Static method in class edu.stanford.smi.protege.util.ApplicationProperties
getMachineIpAddress() - Static method in class edu.stanford.smi.protege.util.SystemUtilities
getMachineName() - Static method in class edu.stanford.smi.protege.util.SystemUtilities
getMainIcon() - Method in class edu.stanford.smi.protege.util.DefaultRenderer
getMainPanel() - Static method in class edu.stanford.smi.protege.action.ProjectAction
getMainPanel() - Method in class edu.stanford.smi.protege.ui.ProjectManager
getMainText() - Method in class edu.stanford.smi.protege.util.DefaultRenderer
getMainWindow() - Static method in class edu.stanford.smi.protege.Application
getMainWindowMenuBar() - Method in class edu.stanford.smi.protege.widget.AbstractTabWidget
getMainWindowToolBar() - Method in class edu.stanford.smi.protege.widget.AbstractTabWidget
getMatches(String, int) - Method in class edu.stanford.smi.protege.ui.BrowserTextListFinder
getMatches(String, int) - Method in class edu.stanford.smi.protege.ui.Finder
getMatches(String, int) - Method in class edu.stanford.smi.protege.ui.FrameTreeFinder
getMatches(String, int) - Method in class edu.stanford.smi.protege.ui.ListFinder
getMatchingFrames(Slot, Facet, boolean, String, int) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getMatchingFrames(Slot, Facet, boolean, String, int) - Method in class edu.stanford.smi.protege.model.framestore.ClosureCachingBasicFrameStore
getMatchingFrames(Slot, Facet, boolean, String, int) - Method in class edu.stanford.smi.protege.model.framestore.ImmutableNamesNarrowFrameStore
getMatchingFrames(Slot, Facet, boolean, String, int) - Method in class edu.stanford.smi.protege.model.framestore.InMemoryFrameDb
getMatchingFrames(Slot, Facet, boolean, String, int) - Method in class edu.stanford.smi.protege.model.framestore.MergingNarrowFrameStore
getMatchingFrames(Slot, Facet, boolean, String, int) - Method in interface edu.stanford.smi.protege.model.framestore.NarrowFrameStore
getMatchingFrames(Slot, Facet, boolean, String, int) - Method in class edu.stanford.smi.protege.model.framestore.PlaceHolderNarrowFrameStore
getMatchingFrames(Slot, Facet, boolean, String, int) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
  Finds all occurances of a string in the knowledge base.
getMatchingFrames(Slot, Facet, boolean, String, int) - Method in interface edu.stanford.smi.protege.model.Storage
getMatchingFrames(Slot, Facet, boolean, String, int, RemoteSession) - Method in interface edu.stanford.smi.protege.server.narrowframestore.RemoteServerNarrowFrameStore
getMatchingFrames(Slot, Facet, boolean, String, int, RemoteSession) - Method in class edu.stanford.smi.protege.server.narrowframestore.ServerNarrowFrameStore
getMatchingFrames(Slot, Facet, boolean, String, int) - Method in class edu.stanford.smi.protege.storage.database.DefaultDatabaseFrameDb
getMatchingFrames(Slot, Facet, boolean, String, int) - Method in class edu.stanford.smi.protege.storage.database.IdleConnectionNarrowFrameStore
getMatchingFrames(Slot, Facet, boolean, String, int) - Method in class edu.stanford.smi.protege.storage.database.ValueCachingNarrowFrameStore
getMatchingFrames(String, int) - Method in class edu.stanford.smi.protege.ui.ClsTreeFinder
getMatchingFrames(String, int) - Method in class edu.stanford.smi.protege.ui.FrameTreeFinder
getMatchingReferences(String, int) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getMatchingReferences(String, int) - Method in class edu.stanford.smi.protege.model.framestore.ArgumentCheckingFrameStore
getMatchingReferences(String, int) - Method in class edu.stanford.smi.protege.model.framestore.ClosureCachingBasicFrameStore
getMatchingReferences(String, int) - Method in interface edu.stanford.smi.protege.model.framestore.FrameStore
getMatchingReferences(String, int) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreAdapter
getMatchingReferences(String, int) - Method in class edu.stanford.smi.protege.model.framestore.ImmutableNamesNarrowFrameStore
getMatchingReferences(String, int) - Method in class edu.stanford.smi.protege.model.framestore.InMemoryFrameDb
getMatchingReferences(String, int) - Method in class edu.stanford.smi.protege.model.framestore.MergingNarrowFrameStore
getMatchingReferences(String, int) - Method in class edu.stanford.smi.protege.model.framestore.ModificationFrameStore
getMatchingReferences(String, int) - Method in interface edu.stanford.smi.protege.model.framestore.NarrowFrameStore
getMatchingReferences(String, int) - Method in class edu.stanford.smi.protege.model.framestore.PlaceHolderNarrowFrameStore
getMatchingReferences(String, int) - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
getMatchingReferences(String, int) - Method in class edu.stanford.smi.protege.model.framestore.TemplateFrameStore
getMatchingReferences(String, int) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getMatchingReferences(String, int) - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
getMatchingReferences(String, int, RemoteSession) - Method in interface edu.stanford.smi.protege.server.framestore.RemoteServerFrameStore
getMatchingReferences(String, int, RemoteSession) - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
getMatchingReferences(String, int, RemoteSession) - Method in interface edu.stanford.smi.protege.server.narrowframestore.RemoteServerNarrowFrameStore
getMatchingReferences(String, int, RemoteSession) - Method in class edu.stanford.smi.protege.server.narrowframestore.ServerNarrowFrameStore
getMatchingReferences(String, int) - Method in class edu.stanford.smi.protege.storage.database.DefaultDatabaseFrameDb
getMatchingReferences(String, int) - Method in class edu.stanford.smi.protege.storage.database.IdleConnectionNarrowFrameStore
getMatchingReferences(String, int) - Method in class edu.stanford.smi.protege.storage.database.ValueCachingNarrowFrameStore
getMatchString(String, char) - Static method in class edu.stanford.smi.protege.storage.database.DatabaseUtils
getMaximumCardinality(Slot) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getMaximumCardinality() - Method in class edu.stanford.smi.protege.model.DefaultSlot
getMaximumCardinality(Slot) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getMaximumCardinality() - Method in interface edu.stanford.smi.protege.model.Slot
getMaximumCardinality() - Method in class edu.stanford.smi.protege.widget.AbstractSlotWidget
getMaximumCardinality2(Slot) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getMaximumCardinalityFacet() - Method in class edu.stanford.smi.protege.model.SystemFrames
getMaximumCardinalitySlot() - Method in class edu.stanford.smi.protege.model.SystemFrames
getMaximumValue(Slot) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getMaximumValue() - Method in class edu.stanford.smi.protege.model.DefaultSlot
getMaximumValue(Slot) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getMaximumValue() - Method in interface edu.stanford.smi.protege.model.Slot
getMaximumValueFacet() - Method in class edu.stanford.smi.protege.model.SystemFrames
getMaximumValueSlot() - Method in class edu.stanford.smi.protege.model.SystemFrames
getMaxShortValueSize() - Method in enum edu.stanford.smi.protege.storage.database.KnownDatabase
getMaxVarcharSize() - Method in class edu.stanford.smi.protege.storage.database.RobustConnection
getMembers() - Method in interface edu.stanford.smi.protege.server.metaproject.Group
getMembers() - Method in class edu.stanford.smi.protege.server.metaproject.impl.GroupImpl
getMenu(JMenuBar, String) - Static method in class edu.stanford.smi.protege.util.ComponentUtilities
getMenu(JMenuBar, String, boolean) - Static method in class edu.stanford.smi.protege.util.ComponentUtilities
getMenu(JMenuBar, String, boolean, int) - Static method in class edu.stanford.smi.protege.util.ComponentUtilities
getMenuItemSelectedBackground() - Method in class edu.stanford.smi.protege.util.ProtegePlasticTheme
getMenuItemSelectedForeground() - Method in class edu.stanford.smi.protege.util.ProtegePlasticTheme
getMenuSelectedBackground() - Method in class edu.stanford.smi.protege.util.ProtegePlasticTheme
getMenuSelectedForeground() - Method in class edu.stanford.smi.protege.util.ProtegePlasticTheme
getMessage() - Method in class edu.stanford.smi.protege.event.ServerProjectNotificationEvent
getMessage() - Method in exception edu.stanford.smi.protege.storage.clips.ParseException
  This method has the standard behavior when this object has been created using the standard constructors.
getMessage() - Method in error edu.stanford.smi.protege.storage.clips.TokenMgrError
  You can also modify the body of this method to customize your error messages.
getMessage() - Method in class edu.stanford.smi.protege.util.MessageError
getMetaProject() - Method in interface edu.stanford.smi.protege.server.metaproject.Group
getMetaProject() - Method in class edu.stanford.smi.protege.server.metaproject.impl.WrappedProtegeInstanceImpl
getMetaProject() - Method in interface edu.stanford.smi.protege.server.metaproject.PolicyControlledObject
getMetaProject() - Method in class edu.stanford.smi.protege.server.Server
  Deprecated. In ProtegeJobs use getMetaProjectInstance
getMetaProjectInstance() - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
getMetaProjectInstance() - Method in class edu.stanford.smi.protege.server.ServerProject
getMetaProjectInstance() - Method in class edu.stanford.smi.protege.util.ProtegeJob
  This is a utility for dealing with the metaproject instance when it is known that we are executing on the server side.
getMetaProjectLastAccessTimeUpdateFrequency() - Static method in class edu.stanford.smi.protege.server.ServerProperties
getMetaProjectNew() - Method in class edu.stanford.smi.protege.server.Server
getMinimumCardinality(Slot) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getMinimumCardinality() - Method in class edu.stanford.smi.protege.model.DefaultSlot
getMinimumCardinality(Slot) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getMinimumCardinality() - Method in interface edu.stanford.smi.protege.model.Slot
getMinimumCardinality() - Method in class edu.stanford.smi.protege.widget.AbstractSlotWidget
getMinimumCardinalityFacet() - Method in class edu.stanford.smi.protege.model.SystemFrames
getMinimumCardinalitySlot() - Method in class edu.stanford.smi.protege.model.SystemFrames
getMinimumValue(Slot) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getMinimumValue() - Method in class edu.stanford.smi.protege.model.DefaultSlot
getMinimumValue(Slot) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getMinimumValue() - Method in interface edu.stanford.smi.protege.model.Slot
getMinimumValueFacet() - Method in class edu.stanford.smi.protege.model.SystemFrames
getMinimumValueSlot() - Method in class edu.stanford.smi.protege.model.SystemFrames
getMissingTypeString(Instance) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getMnemonic(ResourceKey) - Static method in class edu.stanford.smi.protege.resource.LocalizedText
getModificationTimestampSlot() - Method in class edu.stanford.smi.protege.model.SystemFrames
getModifierSlot() - Method in class edu.stanford.smi.protege.model.SystemFrames
getMRUProjectList() - Static method in class edu.stanford.smi.protege.util.ApplicationProperties
getName() - Method in class edu.stanford.smi.protege.code.generator.wrapping.AbstractWrappedInstance
getName() - Method in class edu.stanford.smi.protege.code.generator.wrapping.JavaCodeGeneratorAction
getName() - Method in class edu.stanford.smi.protege.model.DefaultFrame
getName(Frame) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getName() - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getName() - Method in interface edu.stanford.smi.protege.model.Frame
getName() - Method in class edu.stanford.smi.protege.model.FrameID
getName() - Method in class edu.stanford.smi.protege.model.framestore.AbstractFrameStore
getName() - Method in class edu.stanford.smi.protege.model.framestore.ClosureCachingBasicFrameStore
getName() - Method in interface edu.stanford.smi.protege.model.framestore.FrameStore
getName() - Method in class edu.stanford.smi.protege.model.framestore.ImmutableNamesNarrowFrameStore
getName() - Method in class edu.stanford.smi.protege.model.framestore.InMemoryFrameDb
getName() - Method in class edu.stanford.smi.protege.model.framestore.MergingNarrowFrameStore
getName() - Method in interface edu.stanford.smi.protege.model.framestore.NarrowFrameStore
  The Narrow Frame store has a standard set/get name interface.
getName() - Method in class edu.stanford.smi.protege.model.framestore.PlaceHolderNarrowFrameStore
getName() - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
getName() - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getName(Frame) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getName() - Method in class edu.stanford.smi.protege.model.Project
  same as #getProjectName()
getName() - Method in class edu.stanford.smi.protege.model.WidgetDescriptor
getName() - Method in class edu.stanford.smi.protege.plugin.AbstractCreateProjectPlugin
getName() - Method in class edu.stanford.smi.protege.plugin.AbstractExportPlugin
getName() - Method in class edu.stanford.smi.protege.plugin.AbstractPlugin
getName() - Method in interface edu.stanford.smi.protege.plugin.Plugin
getName() - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
getName() - Method in interface edu.stanford.smi.protege.server.metaproject.Group
getName() - Method in class edu.stanford.smi.protege.server.metaproject.impl.OperationImpl
getName() - Method in class edu.stanford.smi.protege.server.metaproject.impl.PolicyControlledObjectCollectionImpl
getName() - Method in class edu.stanford.smi.protege.server.metaproject.impl.PolicyControlledObjectImpl
getName() - Method in class edu.stanford.smi.protege.server.metaproject.impl.UnbackedOperationImpl
getName() - Method in class edu.stanford.smi.protege.server.metaproject.impl.UserImpl
getName() - Method in interface edu.stanford.smi.protege.server.metaproject.Operation
getName() - Method in interface edu.stanford.smi.protege.server.metaproject.PolicyControlledObject
getName() - Method in interface edu.stanford.smi.protege.server.metaproject.PolicyControlledObjectCollection
getName() - Method in interface edu.stanford.smi.protege.server.metaproject.User
getName(RemoteSession) - Method in interface edu.stanford.smi.protege.server.narrowframestore.RemoteServerNarrowFrameStore
getName(RemoteSession) - Method in class edu.stanford.smi.protege.server.narrowframestore.ServerNarrowFrameStore
getName() - Method in class edu.stanford.smi.protege.server.util.ProjectInfo
getName() - Method in class edu.stanford.smi.protege.storage.clips.ClipsImportExportPlugin
getName() - Method in class edu.stanford.smi.protege.storage.database.AbstractDatabaseFrameDb
getName() - Method in enum edu.stanford.smi.protege.storage.database.DatabaseProperty
getName() - Method in class edu.stanford.smi.protege.storage.database.IdleConnectionNarrowFrameStore
getName() - Method in class edu.stanford.smi.protege.storage.database.ValueCachingNarrowFrameStore
getName(String) - Static method in class edu.stanford.smi.protege.util.FileUtilities
getName() - Method in class edu.stanford.smi.protege.util.Frames1_8_BackwardsCompatibilityProjectFixups
getName() - Method in class edu.stanford.smi.protege.util.StandardAction
getName(Action) - Static method in class edu.stanford.smi.protege.util.StandardAction
getName(URI) - Static method in class edu.stanford.smi.protege.util.URIUtilities
getNames() - Method in class edu.stanford.smi.protege.util.PropertyList
getNameSlot() - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getNameSlot() - Method in class edu.stanford.smi.protege.model.framestore.MergingNarrowFrameStore
getNameSlot() - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getNameSlot() - Method in class edu.stanford.smi.protege.model.SystemFrames
getNameSlot() - Method in class edu.stanford.smi.protege.server.Server
  Deprecated. In ProtegeJobs use getMetaProjectInstance
getNarrowFrameStore(KnowledgeBase, Class) - Static method in class edu.stanford.smi.protege.model.framestore.MergingNarrowFrameStore
getNarrowFrameStore() - Method in class edu.stanford.smi.protege.server.narrowframestore.RemoteClientInvocationHandler
getNesting() - Method in class edu.stanford.smi.protege.util.transaction.TransactionMonitor
getNesting(RemoteSession) - Method in class edu.stanford.smi.protege.util.transaction.TransactionMonitor
getNewFrame() - Method in class edu.stanford.smi.protege.event.FrameEvent
getNewFrame() - Method in class edu.stanford.smi.protege.event.KnowledgeBaseEvent
getNewProject() - Method in class edu.stanford.smi.protege.plugin.ExportWizard
getNewProjectIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getNewProjectIcon(boolean, boolean) - Static method in class edu.stanford.smi.protege.resource.Icons
getNewStatus() - Method in class edu.stanford.smi.protege.event.ServerProjectStatusChangeEvent
getNewValue() - Method in class edu.stanford.smi.protege.util.transaction.cache.serialize.CacheModify
getNextFrameNumber() - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
  Deprecated. No longer implemented
getNextFrameNumber() - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getNextPage() - Method in class edu.stanford.smi.protege.plugin.ChangeProjectFormatWizardPage
getNextPage() - Method in class edu.stanford.smi.protege.plugin.SelectOutputFormatWizardPage
getNextPage() - Method in class edu.stanford.smi.protege.plugin.SelectProjectTypeWizardPage
getNextPage() - Method in class edu.stanford.smi.protege.storage.clips.ClipsFilesWizardPage
getNextPage() - Method in class edu.stanford.smi.protege.util.WizardPage
  Override to return the next page to be displayed.
getNextToken() - Method in class edu.stanford.smi.protege.storage.clips.Parser
  Get the next Token.
getNextToken() - Method in class edu.stanford.smi.protege.storage.clips.ParserTokenManager
  Get the next Token.
getNextUniqueId() - Static method in class edu.stanford.smi.protege.util.IDGenerator
getNodeAndDescendents(X) - Method in class edu.stanford.smi.protege.util.Tree
getNodes() - Method in class edu.stanford.smi.protege.util.Tree
getNoIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getObjectPath(TreePath) - Static method in class edu.stanford.smi.protege.util.ComponentUtilities
getOkIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getOldMetaCls() - Method in class edu.stanford.smi.protege.event.KnowledgeBaseEvent
getOldName() - Method in class edu.stanford.smi.protege.event.FrameEvent
getOldName() - Method in class edu.stanford.smi.protege.event.KnowledgeBaseEvent
getOldNextFrameNumber() - Static method in class edu.stanford.smi.protege.util.ApplicationProperties
getOldStatus() - Method in class edu.stanford.smi.protege.event.ServerProjectStatusChangeEvent
getOldValues() - Method in class edu.stanford.smi.protege.event.FrameEvent
getOntology101URLString() - Static method in class edu.stanford.smi.protege.util.ApplicationProperties
getOpenProjectIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getOpenProjectIcon(boolean, boolean) - Static method in class edu.stanford.smi.protege.resource.Icons
getOpenWindows() - Method in class edu.stanford.smi.protege.model.Project
getOperation(String) - Method in class edu.stanford.smi.protege.server.metaproject.impl.MetaProjectImpl
getOperation(String) - Method in interface edu.stanford.smi.protege.server.metaproject.MetaProject
getOperations() - Method in class edu.stanford.smi.protege.server.metaproject.impl.MetaProjectImpl
getOperations() - Method in interface edu.stanford.smi.protege.server.metaproject.MetaProject
getOrCreateProject(String) - Method in class edu.stanford.smi.protege.server.Server
getOutputFolder() - Method in interface edu.stanford.smi.protege.code.generator.wrapping.JavaCodeGeneratorOptions
getOutputFolder() - Method in class edu.stanford.smi.protege.code.generator.wrapping.ProjectBasedJavaCodeGeneratorOptions
getOutputStream() - Method in class edu.stanford.smi.protege.server.socket.CompressionAspect
getOutputStream() - Method in class edu.stanford.smi.protege.server.socket.MonitoringAspect
getOutputStream() - Method in class edu.stanford.smi.protege.server.socket.SimulateDelayAspect
getOutputStream() - Method in interface edu.stanford.smi.protege.server.socket.SocketAspect
getOutputStream() - Method in class edu.stanford.smi.protege.server.socket.SocketWithAspects
getOutputStream() - Method in class edu.stanford.smi.protege.server.socket.TeeAspect
getOutputStream() - Method in class edu.stanford.smi.protege.server.util.ZipSocket
getOverriddenTemplateFacets(Slot) - Method in interface edu.stanford.smi.protege.model.Cls
getOverriddenTemplateFacets(Slot) - Method in class edu.stanford.smi.protege.model.DefaultCls
getOverriddenTemplateFacets(Cls, Slot) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getOverriddenTemplateFacets(Cls, Slot) - Method in class edu.stanford.smi.protege.model.framestore.ArgumentCheckingFrameStore
getOverriddenTemplateFacets(Cls, Slot) - Method in interface edu.stanford.smi.protege.model.framestore.FrameStore
getOverriddenTemplateFacets(Cls, Slot) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreAdapter
getOverriddenTemplateFacets(Cls, Slot) - Method in class edu.stanford.smi.protege.model.framestore.ModificationFrameStore
getOverriddenTemplateFacets(Cls, Slot) - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
getOverriddenTemplateFacets(Cls, Slot) - Method in class edu.stanford.smi.protege.model.framestore.TemplateFrameStore
getOverriddenTemplateFacets(Cls, Slot) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getOverriddenTemplateFacets(Cls, Slot) - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
getOverriddenTemplateFacets(Cls, Slot, RemoteSession) - Method in interface edu.stanford.smi.protege.server.framestore.RemoteServerFrameStore
getOverriddenTemplateFacets(Cls, Slot, RemoteSession) - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
getOverriddenTemplateSlots(Cls) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getOverriddenTemplateSlots(Cls) - Method in class edu.stanford.smi.protege.model.framestore.ArgumentCheckingFrameStore
getOverriddenTemplateSlots(Cls) - Method in interface edu.stanford.smi.protege.model.framestore.FrameStore
getOverriddenTemplateSlots(Cls) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreAdapter
getOverriddenTemplateSlots(Cls) - Method in class edu.stanford.smi.protege.model.framestore.ModificationFrameStore
getOverriddenTemplateSlots(Cls) - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
getOverriddenTemplateSlots(Cls) - Method in class edu.stanford.smi.protege.model.framestore.TemplateFrameStore
getOverriddenTemplateSlots(Cls) - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
getOverriddenTemplateSlots(Cls, RemoteSession) - Method in interface edu.stanford.smi.protege.server.framestore.RemoteServerFrameStore
getOverriddenTemplateSlots(Cls, RemoteSession) - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
getOwner() - Method in class edu.stanford.smi.protege.server.metaproject.impl.ProjectInstanceImpl
getOwner() - Method in interface edu.stanford.smi.protege.server.metaproject.ProjectInstance
getOwner() - Method in class edu.stanford.smi.protege.server.util.ProjectInfo
getOwners() - Method in class edu.stanford.smi.protege.server.metaproject.impl.ProjectInstanceImpl
getOwners() - Method in interface edu.stanford.smi.protege.server.metaproject.ProjectInstance
getOwnFacets(Frame, Slot) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getOwnFacets(Frame, Slot) - Method in class edu.stanford.smi.protege.model.framestore.ArgumentCheckingFrameStore
getOwnFacets(Frame, Slot) - Method in interface edu.stanford.smi.protege.model.framestore.FrameStore
getOwnFacets(Frame, Slot) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreAdapter
getOwnFacets(Frame, Slot) - Method in class edu.stanford.smi.protege.model.framestore.ModificationFrameStore
getOwnFacets(Frame, Slot) - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
getOwnFacets(Frame, Slot) - Method in class edu.stanford.smi.protege.model.framestore.TemplateFrameStore
getOwnFacets(Frame, Slot) - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
getOwnFacetValue(Slot, Facet) - Method in class edu.stanford.smi.protege.model.DefaultInstance
getOwnFacetValue(Slot, Facet) - Method in interface edu.stanford.smi.protege.model.Frame
  see `Frame`for a description of the return type
getOwnFacetValues(Slot, Facet) - Method in class edu.stanford.smi.protege.model.DefaultInstance
getOwnFacetValues(Frame, Slot, Facet) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getOwnFacetValues(Slot, Facet) - Method in interface edu.stanford.smi.protege.model.Frame
  see `Frame`for a description of the return type
getOwnFacetValues(Frame, Slot, Facet) - Method in class edu.stanford.smi.protege.model.framestore.ArgumentCheckingFrameStore
getOwnFacetValues(Frame, Slot, Facet) - Method in interface edu.stanford.smi.protege.model.framestore.FrameStore
getOwnFacetValues(Frame, Slot, Facet) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreAdapter
getOwnFacetValues(Frame, Slot, Facet) - Method in class edu.stanford.smi.protege.model.framestore.ModificationFrameStore
getOwnFacetValues(Frame, Slot, Facet) - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
getOwnFacetValues(Frame, Slot, Facet) - Method in class edu.stanford.smi.protege.model.framestore.TemplateFrameStore
getOwnFacetValues(Frame, Slot, Facet) - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
getOwnSlotAllowsMultipleValues(Slot) - Method in class edu.stanford.smi.protege.model.DefaultFrame
getOwnSlotAllowsMultipleValues(Frame, Slot) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getOwnSlotAllowsMultipleValues(Slot) - Method in interface edu.stanford.smi.protege.model.Frame
getOwnSlotAllowsMultipleValues(Frame, Slot) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getOwnSlotAndSubslotValues(Slot) - Method in class edu.stanford.smi.protege.model.DefaultFrame
getOwnSlotAndSubslotValues(Frame, Slot) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
  Deprecated. use getOwnSlotValues
getOwnSlotAndSubslotValues(Slot) - Method in interface edu.stanford.smi.protege.model.Frame
  Returns the own slot values for this slot and all of its subslots.
getOwnSlotAndSubslotValues(Frame, Slot) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getOwnSlotDefaultValues(Slot) - Method in class edu.stanford.smi.protege.model.DefaultFrame
getOwnSlotDefaultValues(Frame, Slot) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getOwnSlotDefaultValues(Slot) - Method in interface edu.stanford.smi.protege.model.Frame
  see `Frame`for a description of the return type
getOwnSlotDefaultValues(Frame, Slot) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getOwnSlotFacets(Slot) - Method in class edu.stanford.smi.protege.model.DefaultFrame
getOwnSlotFacets(Frame, Slot) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
  Deprecated. renamed to #getOwnFacets
getOwnSlotFacets(Slot) - Method in interface edu.stanford.smi.protege.model.Frame
getOwnSlotFacets(Frame, Slot) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getOwnSlotFacetValues(Slot, Facet) - Method in class edu.stanford.smi.protege.model.DefaultFrame
getOwnSlotFacetValues(Frame, Slot, Facet) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
  Deprecated. renamed to #getOwnFacetValues
getOwnSlotFacetValues(Slot, Facet) - Method in interface edu.stanford.smi.protege.model.Frame
getOwnSlotFacetValues(Frame, Slot, Facet) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getOwnSlots() - Method in class edu.stanford.smi.protege.model.DefaultFrame
getOwnSlots(Frame) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getOwnSlots() - Method in interface edu.stanford.smi.protege.model.Frame
  Gets the collection of own slots for a frame.
getOwnSlots(Frame) - Method in class edu.stanford.smi.protege.model.framestore.ArgumentCheckingFrameStore
getOwnSlots(Frame) - Method in interface edu.stanford.smi.protege.model.framestore.FrameStore
getOwnSlots(Frame) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreAdapter
getOwnSlots(Frame) - Method in class edu.stanford.smi.protege.model.framestore.ModificationFrameStore
getOwnSlots(Frame) - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
getOwnSlots(Frame) - Method in class edu.stanford.smi.protege.model.framestore.TemplateFrameStore
getOwnSlots(Frame) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getOwnSlots(Frame) - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
getOwnSlots(Frame, RemoteSession) - Method in interface edu.stanford.smi.protege.server.framestore.RemoteServerFrameStore
getOwnSlots(Frame, RemoteSession) - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
getOwnSlotValue(Slot) - Method in class edu.stanford.smi.protege.model.DefaultFrame
getOwnSlotValue(Frame, Slot) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getOwnSlotValue(Slot) - Method in interface edu.stanford.smi.protege.model.Frame
  see `Frame` for a description of the return type
getOwnSlotValue(Frame, Slot) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getOwnSlotValue(Frame, String) - Static method in class edu.stanford.smi.protege.model.ModelUtilities
getOwnSlotValue(Frame, String) - Static method in class edu.stanford.smi.protege.model.Project
getOwnSlotValueCount(Slot) - Method in class edu.stanford.smi.protege.model.DefaultFrame
getOwnSlotValueCount(Frame, Slot) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getOwnSlotValueCount(Slot) - Method in interface edu.stanford.smi.protege.model.Frame
getOwnSlotValueCount(Frame, Slot) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getOwnSlotValues(Slot) - Method in class edu.stanford.smi.protege.model.DefaultFrame
getOwnSlotValues(Frame, Slot) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getOwnSlotValues(Slot) - Method in interface edu.stanford.smi.protege.model.Frame
  see `Frame` for a description of the return type
getOwnSlotValues(Frame, Slot) - Method in class edu.stanford.smi.protege.model.framestore.ArgumentCheckingFrameStore
getOwnSlotValues(Frame, Slot) - Method in interface edu.stanford.smi.protege.model.framestore.FrameStore
getOwnSlotValues(Frame, Slot) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreAdapter
getOwnSlotValues(Frame, Slot) - Method in class edu.stanford.smi.protege.model.framestore.ModificationFrameStore
getOwnSlotValues(Frame, Slot) - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
getOwnSlotValues(Frame, Slot) - Method in class edu.stanford.smi.protege.model.framestore.TemplateFrameStore
getOwnSlotValues(Frame, Slot) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getOwnSlotValues(Frame, String) - Static method in class edu.stanford.smi.protege.model.ModelUtilities
getOwnSlotValues(Frame, Slot) - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
GetOwnSlotValuesBrowserTextJob - Class in edu.stanford.smi.protege.util
  Protege Job for getting the own slot values of a frame slot pair and the browser text of the values from the server.
GetOwnSlotValuesBrowserTextJob(KnowledgeBase, Frame, Slot, boolean) - Constructor for class edu.stanford.smi.protege.util.GetOwnSlotValuesBrowserTextJob
getOwnSlotValueType(Slot) - Method in class edu.stanford.smi.protege.model.DefaultFrame
getOwnSlotValueType(Frame, Slot) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getOwnSlotValueType(Slot) - Method in interface edu.stanford.smi.protege.model.Frame
getOwnSlotValueType(Frame, Slot) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getPackage() - Method in interface edu.stanford.smi.protege.code.generator.wrapping.JavaCodeGeneratorOptions
getPackage() - Method in class edu.stanford.smi.protege.code.generator.wrapping.ProjectBasedJavaCodeGeneratorOptions
getPalConstraintCls() - Method in class edu.stanford.smi.protege.model.SystemFrames
getPalDescriptionSlot() - Method in class edu.stanford.smi.protege.model.SystemFrames
getPalNameSlot() - Method in class edu.stanford.smi.protege.model.SystemFrames
getPalRangeSlot() - Method in class edu.stanford.smi.protege.model.SystemFrames
getPalStatementSlot() - Method in class edu.stanford.smi.protege.model.SystemFrames
getParent() - Method in class edu.stanford.smi.protege.util.LazyTreeNode
getParentComponent() - Method in class edu.stanford.smi.protege.action.ExportToCsvAction
getParents(Frame) - Method in class edu.stanford.smi.protege.ui.ClsTreeFinder
getParents(Frame) - Method in class edu.stanford.smi.protege.ui.FrameTreeFinder
getParents(Frame) - Method in class edu.stanford.smi.protege.ui.SlotsTreeFinder
getParents(X) - Method in class edu.stanford.smi.protege.util.TreeSelectionHelper
getParentURI(URI) - Static method in class edu.stanford.smi.protege.util.URIUtilities
getPassword() - Method in class edu.stanford.smi.protege.server.RegisterUserServerPanel
getPassword(PropertyList) - Static method in class edu.stanford.smi.protege.storage.database.DatabaseKnowledgeBaseFactory
getPassword() - Method in class edu.stanford.smi.protege.storage.database.pool.DatabaseParam
getPasteIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getPasteIcon(boolean, boolean) - Static method in class edu.stanford.smi.protege.resource.Icons
getPath(Cls, List<Cls>) - Method in class edu.stanford.smi.protege.model.ModelUtilities
getPath(Slot, List) - Method in class edu.stanford.smi.protege.ui.SubslotPane
getPath() - Method in class edu.stanford.smi.protege.util.FileField
getPaths() - Method in class edu.stanford.smi.protege.util.FileList
getPathsToRoot(Cls) - Static method in class edu.stanford.smi.protege.model.ModelUtilities
  Computes all paths from a class to the root node by navigating on the direct superclasses slot.
getPathToRoot(Cls) - Static method in class edu.stanford.smi.protege.model.ModelUtilities
getPlugin() - Method in class edu.stanford.smi.protege.plugin.AbstractImportExportSpecification
getPlugin() - Method in class edu.stanford.smi.protege.plugin.CreateProjectWizard
getPluginComponentAboutURL(String) - Static method in class edu.stanford.smi.protege.plugin.PluginUtilities
getPluginComponentDocURL(String) - Static method in class edu.stanford.smi.protege.plugin.PluginUtilities
getPluginComponentNames() - Static method in class edu.stanford.smi.protege.plugin.PluginUtilities
getPluginsDirectory() - Static method in class edu.stanford.smi.protege.plugin.PluginUtilities
  Deprecated. use class loader instead.
getPolicy() - Method in class edu.stanford.smi.protege.server.metaproject.impl.MetaProjectImpl
getPolicy() - Method in interface edu.stanford.smi.protege.server.metaproject.MetaProject
getPolicy() - Static method in class edu.stanford.smi.protege.server.Server
getPopupMenu() - Method in class edu.stanford.smi.protege.ui.SubslotPane
getPopupMenu() - Method in class edu.stanford.smi.protege.util.PopupMenuMouseListener
getPopupMenu() - Method in class edu.stanford.smi.protege.util.SelectableTree
getPopupMenu() - Method in class edu.stanford.smi.protege.widget.AbstractTableWidget
getPopupMenu() - Method in class edu.stanford.smi.protege.widget.AbstractTreeWidget
getPopupMenu() - Method in class edu.stanford.smi.protege.widget.TemplateSlotsWidget
getPossibleInverses() - Method in class edu.stanford.smi.protege.widget.InverseSlotWidget
getPossibleSlots() - Method in class edu.stanford.smi.protege.ui.ExportConfigurationPanel
getPreCacheBacklog() - Method in class edu.stanford.smi.protege.server.framestore.background.FrameCalculator.FrameCalculatorStatsImpl
getPreCacheBacklog() - Method in interface edu.stanford.smi.protege.server.framestore.background.FrameCalculatorStats
getPrecalculateTime() - Method in class edu.stanford.smi.protege.server.framestore.background.FrameCalculator.FrameCalculatorStatsImpl
getPrecalculateTime() - Method in interface edu.stanford.smi.protege.server.framestore.background.FrameCalculatorStats
getPreferredSize() - Method in class edu.stanford.smi.protege.ui.InstanceDisplay
getPreferredSize() - Method in class edu.stanford.smi.protege.util.DefaultRenderer
getPreferredSize() - Method in class edu.stanford.smi.protege.widget.AbstractSlotWidget
getPreferredSize() - Method in class edu.stanford.smi.protege.widget.ButtonConfigurationPanel
getPreferredSize() - Method in class edu.stanford.smi.protege.widget.FormWidget
getPreloadFrameLimit() - Static method in class edu.stanford.smi.protege.server.ServerProperties
getPreparedStatement(String) - Method in class edu.stanford.smi.protege.storage.database.pool.ConnectionInfo
getPreparedStatement(Connection, String) - Method in class edu.stanford.smi.protege.storage.database.pool.ConnectionPool
getPreparedStatement(String) - Method in class edu.stanford.smi.protege.storage.database.RobustConnection
getPrettyPrintSlotWidgetLabels() - Method in class edu.stanford.smi.protege.model.Project
getPrettyPrintSlotWidgetLabels() - Static method in class edu.stanford.smi.protege.util.ApplicationProperties
getPrimitiveMethod() - Method in class edu.stanford.smi.protege.code.generator.wrapping.SlotAtClassCode
getProgramName() - Static method in class edu.stanford.smi.protege.resource.Text
getProgramNameAndVersion() - Static method in class edu.stanford.smi.protege.resource.Text
getProgramTextName() - Static method in class edu.stanford.smi.protege.resource.Text
getProject() - Static method in class edu.stanford.smi.protege.action.ProjectAction
getProject() - Method in class edu.stanford.smi.protege.model.DefaultFrame
getProject() - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getProject() - Method in interface edu.stanford.smi.protege.model.Frame
getProject() - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getProject() - Method in class edu.stanford.smi.protege.plugin.CreateProjectWizard
getProject(String) - Method in class edu.stanford.smi.protege.server.metaproject.impl.MetaProjectImpl
getProject(String) - Method in interface edu.stanford.smi.protege.server.metaproject.MetaProject
getProject(String, String, String, String, boolean) - Method in class edu.stanford.smi.protege.server.RemoteProjectManager
getProject(String) - Method in class edu.stanford.smi.protege.server.Server
getProject() - Method in class edu.stanford.smi.protege.ui.ClsesPanel
getProject() - Method in class edu.stanford.smi.protege.ui.ClsInverseRelationshipPanel
getProject() - Method in class edu.stanford.smi.protege.ui.ProjectView
getProject() - Method in class edu.stanford.smi.protege.util.ProjectChooser
getProject() - Method in class edu.stanford.smi.protege.widget.AbstractWidget
getProject() - Method in class edu.stanford.smi.protege.widget.InstanceValuesComponent
getProject() - Method in interface edu.stanford.smi.protege.widget.Widget
getProjectCls() - Method in class edu.stanford.smi.protege.server.Server
  Deprecated. In ProtegeJobs use getMetaProjectInstance
getProjectClsesReader() - Static method in class edu.stanford.smi.protege.model.Project
getProjectDirectoryFile() - Method in class edu.stanford.smi.protege.model.Project
  Deprecated. Use #getProjectDirectoryURI()
getProjectDirectoryURI() - Method in class edu.stanford.smi.protege.model.Project
getProjectFile() - Method in class edu.stanford.smi.protege.model.Project
  Deprecated. Use #getProjectURI()
getProjectFilePath() - Method in class edu.stanford.smi.protege.model.AbstractKnowledgeBaseFactory
getProjectFilePath() - Method in interface edu.stanford.smi.protege.model.KnowledgeBaseFactory
getProjectFilePath() - Method in class edu.stanford.smi.protege.model.Project
  Deprecated. Use #getProjectURI()
getProjectFilePath() - Method in class edu.stanford.smi.protege.storage.database.DatabaseKnowledgeBaseFactory
getProjectIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getProjectIcon(boolean, boolean) - Static method in class edu.stanford.smi.protege.resource.Icons
getProjectInstance() - Method in class edu.stanford.smi.protege.model.Project
getProjectInstance(KnowledgeBase) - Static method in class edu.stanford.smi.protege.model.Project
getProjectInstanceByName(String) - Method in class edu.stanford.smi.protege.server.metaproject.impl.PolicyImpl
getProjectInstanceByName(String) - Method in interface edu.stanford.smi.protege.server.metaproject.Policy
getProjectInstancesReader(URI, KnowledgeBaseFactory, Collection) - Static method in class edu.stanford.smi.protege.model.Project
getProjectManager() - Static method in class edu.stanford.smi.protege.action.ProjectAction
getProjectManager() - Static method in class edu.stanford.smi.protege.ui.ProjectManager
getProjectName() - Method in class edu.stanford.smi.protege.event.ServerProjectNotificationEvent
getProjectName() - Method in class edu.stanford.smi.protege.event.ServerProjectSessionClosedEvent
getProjectName() - Method in class edu.stanford.smi.protege.event.ServerProjectStatusChangeEvent
getProjectName() - Method in class edu.stanford.smi.protege.model.Project
getProjectName() - Method in class edu.stanford.smi.protege.server.ServerProjectPanel
getProjectPath() - Method in class edu.stanford.smi.protege.model.KnowledgeBaseSourcesEditor
getProjects() - Method in class edu.stanford.smi.protege.server.metaproject.impl.MetaProjectImpl
getProjects() - Method in interface edu.stanford.smi.protege.server.metaproject.MetaProject
GetProjectsForSessionJob - Class in edu.stanford.smi.protege.server.job
GetProjectsForSessionJob(RemoteServer, RemoteSession, RemoteSession) - Constructor for class edu.stanford.smi.protege.server.job.GetProjectsForSessionJob
getProjectsStatusMap() - Method in class edu.stanford.smi.protege.server.Server
GetProjectsStatusMapJob - Class in edu.stanford.smi.protege.server.job
GetProjectsStatusMapJob(RemoteServer, RemoteSession) - Constructor for class edu.stanford.smi.protege.server.job.GetProjectsStatusMapJob
getProjectStatus(String) - Method in interface edu.stanford.smi.protege.server.RemoteServer
getProjectStatus(String) - Method in class edu.stanford.smi.protege.server.Server
getProjectTree() - Method in class edu.stanford.smi.protege.model.Project
getProjectURI() - Method in class edu.stanford.smi.protege.model.Project
getProjectURI() - Method in class edu.stanford.smi.protege.server.RemoteClientProject
getProjectURI() - Method in class edu.stanford.smi.protege.storage.clips.FileSourcesPanel
getProjectURL() - Method in class edu.stanford.smi.protege.server.RemoteClientProject
getProjectView() - Static method in class edu.stanford.smi.protege.action.ProjectAction
getProjectView() - Method in class edu.stanford.smi.protege.util.ProjectViewEvent
getProperties() - Method in class edu.stanford.smi.protege.widget.PropertiesTableModel
getProperty(DatabaseProperty) - Static method in enum edu.stanford.smi.protege.storage.database.DatabaseProperty
getPropertyClosureToRoot(Instance, Slot, Instance, List<Instance>, Collection<List<Instance>>) - Static method in class edu.stanford.smi.protege.model.ModelUtilities
getPropertyClosureToRoot(Instance, Slot, Instance) - Static method in class edu.stanford.smi.protege.model.ModelUtilities
  Computes all paths from an instance to the "root instance" node by navigating on a given slot.
getPropertyColumnIndex() - Static method in class edu.stanford.smi.protege.widget.PropertiesTableModel
getPropertyList() - Method in class edu.stanford.smi.protege.model.WidgetDescriptor
getPropertyList(String) - Method in class edu.stanford.smi.protege.util.PropertyList
getPropertyList() - Method in class edu.stanford.smi.protege.widget.AbstractWidget
getPropertyName() - Method in class edu.stanford.smi.protege.server.metaproject.impl.PropertyValueImpl
getPropertyName() - Method in interface edu.stanford.smi.protege.server.metaproject.PropertyValue
getPropertyValue() - Method in class edu.stanford.smi.protege.server.metaproject.impl.PropertyValueImpl
getPropertyValue(String) - Method in class edu.stanford.smi.protege.server.metaproject.impl.WrappedProtegeInstanceWithPropsImpl
getPropertyValue(String) - Method in interface edu.stanford.smi.protege.server.metaproject.PolicyControlledObject
getPropertyValue() - Method in interface edu.stanford.smi.protege.server.metaproject.PropertyValue
getPropertyValue(String) - Method in interface edu.stanford.smi.protege.server.metaproject.User
getPropertyValues() - Method in interface edu.stanford.smi.protege.server.metaproject.GroupOperation
getPropertyValues() - Method in class edu.stanford.smi.protege.server.metaproject.impl.GroupOperationImpl
getPropertyValues(String, String) - Method in class edu.stanford.smi.protege.server.metaproject.impl.MetaProjectImpl
getPropertyValues() - Method in class edu.stanford.smi.protege.server.metaproject.impl.OperationImpl
getPropertyValues() - Method in class edu.stanford.smi.protege.server.metaproject.impl.UnbackedOperationImpl
getPropertyValues() - Method in class edu.stanford.smi.protege.server.metaproject.impl.WrappedProtegeInstanceWithPropsImpl
getPropertyValues(String, String) - Method in interface edu.stanford.smi.protege.server.metaproject.MetaProject
getPropertyValues() - Method in interface edu.stanford.smi.protege.server.metaproject.Operation
getPropertyValues() - Method in interface edu.stanford.smi.protege.server.metaproject.PolicyControlledObject
getPropertyValues() - Method in interface edu.stanford.smi.protege.server.metaproject.User
getPropertyValuesAsString(String) - Method in class edu.stanford.smi.protege.server.metaproject.impl.WrappedProtegeInstanceWithPropsImpl
getPropertyValuesAsString(String) - Method in interface edu.stanford.smi.protege.server.metaproject.PolicyControlledObject
getPropertyValuesAsString(String) - Method in interface edu.stanford.smi.protege.server.metaproject.User
getPropertyValuesOnAllSuperclasses(Cls, Slot) - Static method in class edu.stanford.smi.protege.model.ModelUtilities
  Returns all own slot values for the slot `slot` for every superclass of a class.
getPropertyValuesOnPropertyClosureToRoot(Instance, Slot, Instance, Slot) - Static method in class edu.stanford.smi.protege.model.ModelUtilities
  Returns all own slot values for the slot `slot` for every instance in any of the paths between an instance (`resource`) and a root instances (`rootResource`) following the relationships defined by the `parentSlot` slot.
getProtegeCollection(Collection) - Method in class edu.stanford.smi.protege.server.metaproject.impl.WrappedProtegeInstanceImpl
getProtegeInstance() - Method in class edu.stanford.smi.protege.server.metaproject.impl.WrappedProtegeInstanceImpl
getProtegeInstance() - Method in interface edu.stanford.smi.protege.server.metaproject.PolicyControlledObject
getProtegeSystemDefaultLocale() - Static method in class edu.stanford.smi.protege.util.SystemUtilities
getQueryExportIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getQueryIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getQueue() - Method in class edu.stanford.smi.protege.server.util.FifoWriter
getQuotedValule(String) - Method in class edu.stanford.smi.protege.action.ExportToCsvAction
getRangeCls() - Method in class edu.stanford.smi.protege.code.generator.wrapping.SlotAtClassCode
getRangeClsName() - Method in class edu.stanford.smi.protege.code.generator.wrapping.SlotAtClassCode
getRDFProperty() - Method in class edu.stanford.smi.protege.code.generator.wrapping.SlotCode
getReachableSimpleInstances() - Method in class edu.stanford.smi.protege.model.DefaultInstance
getReachableSimpleInstances(Collection) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getReachableSimpleInstances(Frame) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getReachableSimpleInstances() - Method in interface edu.stanford.smi.protege.model.Instance
getReachableSimpleInstances(Collection) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getReadEncoding() - Static method in class edu.stanford.smi.protege.util.FileUtilities
getReadEncodingOverride() - Static method in class edu.stanford.smi.protege.util.FileUtilities
getReader(String) - Static method in class edu.stanford.smi.protege.util.FileUtilities
getRealUserName() - Method in interface edu.stanford.smi.protege.server.RemoteSession
getRealUserName() - Method in class edu.stanford.smi.protege.server.Session
getReasons() - Method in class edu.stanford.smi.protege.server.framestore.background.WorkInfo
getRecords() - Method in class edu.stanford.smi.protege.model.framestore.InMemoryFrameDb
getRectangle(Instance) - Static method in class edu.stanford.smi.protege.util.InstanceUtilities
getRectangle(String) - Method in class edu.stanford.smi.protege.util.PropertyList
getRedoCommand() - Method in interface edu.stanford.smi.protege.model.CommandManager
getRedoCommand() - Method in class edu.stanford.smi.protege.model.framestore.undo.UndoFrameStore
getRedoIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getRedoIcon(boolean, boolean) - Static method in class edu.stanford.smi.protege.resource.Icons
getReferencerCount() - Method in class edu.stanford.smi.protege.ui.ReferencersPanel
getReferences() - Method in class edu.stanford.smi.protege.model.DefaultFrame
getReferences(int) - Method in class edu.stanford.smi.protege.model.DefaultFrame
getReferences(Frame) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getReferences(Object, int) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getReferences() - Method in interface edu.stanford.smi.protege.model.Frame
getReferences(int) - Method in interface edu.stanford.smi.protege.model.Frame
getReferences(Object) - Method in class edu.stanford.smi.protege.model.framestore.ArgumentCheckingFrameStore
getReferences(Object) - Method in class edu.stanford.smi.protege.model.framestore.ClosureCachingBasicFrameStore
getReferences(Object) - Method in interface edu.stanford.smi.protege.model.framestore.FrameStore
getReferences(Object) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreAdapter
getReferences(Object) - Method in class edu.stanford.smi.protege.model.framestore.ImmutableNamesNarrowFrameStore
getReferences(Object) - Method in class edu.stanford.smi.protege.model.framestore.InMemoryFrameDb
getReferences(Object) - Method in class edu.stanford.smi.protege.model.framestore.MergingNarrowFrameStore
getReferences(Object) - Method in class edu.stanford.smi.protege.model.framestore.ModificationFrameStore
getReferences(Object) - Method in interface edu.stanford.smi.protege.model.framestore.NarrowFrameStore
getReferences(Object) - Method in class edu.stanford.smi.protege.model.framestore.PlaceHolderNarrowFrameStore
getReferences(Object) - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
getReferences(Object) - Method in class edu.stanford.smi.protege.model.framestore.TemplateFrameStore
getReferences(Object, int) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getReferences(Object, int) - Method in interface edu.stanford.smi.protege.model.Storage
getReferences(Object) - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
getReferences(Object, RemoteSession) - Method in interface edu.stanford.smi.protege.server.framestore.RemoteServerFrameStore
getReferences(Object, RemoteSession) - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
getReferences(Object, RemoteSession) - Method in interface edu.stanford.smi.protege.server.narrowframestore.RemoteServerNarrowFrameStore
getReferences(Object, RemoteSession) - Method in class edu.stanford.smi.protege.server.narrowframestore.ServerNarrowFrameStore
getReferences(Object) - Method in class edu.stanford.smi.protege.storage.database.DefaultDatabaseFrameDb
getReferences(Object) - Method in class edu.stanford.smi.protege.storage.database.IdleConnectionNarrowFrameStore
getReferences(Object) - Method in class edu.stanford.smi.protege.storage.database.ValueCachingNarrowFrameStore
getReifedRelationFromSlot() - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getReifedRelationFromSlot() - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getReifedRelationToSlot() - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getReifedRelationToSlot() - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getReifiedRelationCls() - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getReifiedRelationCls() - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getRelationCls() - Method in class edu.stanford.smi.protege.model.SystemFrames
getRelationshipPane() - Method in class edu.stanford.smi.protege.ui.ClsesPanel
getRelationSlots() - Method in class edu.stanford.smi.protege.ui.ClsesPanel
getRelativeDirectory() - Method in class edu.stanford.smi.protege.util.PathSplitter
getRelativeURI() - Method in class edu.stanford.smi.protege.util.URIField
getRelayoutIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getRemoteDelegate() - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
getRemoteProject() - Method in class edu.stanford.smi.protege.server.RemoteProjectManager
getRemoteServer() - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
getRemoteServer(KnowledgeBase) - Static method in class edu.stanford.smi.protege.server.util.RemoteProjectUtil
getRemoteSession(int) - Method in class edu.stanford.smi.protege.server.admin.UserInfoTableModel
getRemoveClsAction() - Method in class edu.stanford.smi.protege.widget.ClsFieldWidget
getRemoveClsesAction() - Method in class edu.stanford.smi.protege.widget.ClsListWidget
getRemoveClsIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getRemoveCustomizationsIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getRemoveIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getRemoveInstanceAction() - Method in class edu.stanford.smi.protege.widget.InstanceFieldWidget
getRemoveInstanceIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getRemoveInstancesAction() - Method in class edu.stanford.smi.protege.widget.InstanceListWidget
getRemoveOverrideAction() - Method in class edu.stanford.smi.protege.widget.TemplateSlotsWidget
getRemoveSlotIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getRemoveSlotOverrideIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getRemoveSlotsAction() - Method in class edu.stanford.smi.protege.widget.TemplateSlotsWidget
getRequestLock() - Method in class edu.stanford.smi.protege.server.framestore.background.FrameCalculator
getResourceReader(Class, String) - Static method in class edu.stanford.smi.protege.util.FileUtilities
getResourceReader(Class, String, String) - Static method in class edu.stanford.smi.protege.util.FileUtilities
getResourceStream(Class, String) - Static method in class edu.stanford.smi.protege.util.FileUtilities
getResourceStream(Class, String, String) - Static method in class edu.stanford.smi.protege.util.FileUtilities
getResponse() - Method in class edu.stanford.smi.protege.server.update.RemoteResponse
getResult() - Method in class edu.stanford.smi.protege.model.Transaction
getResult() - Method in class edu.stanford.smi.protege.util.transaction.cache.CacheResult
getRetrieveQueryLibraryIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getRevertProjectIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getRevertProjectIcon(boolean, boolean) - Static method in class edu.stanford.smi.protege.resource.Icons
getRoleSlot() - Method in class edu.stanford.smi.protege.model.SystemFrames
getRoot() - Method in class edu.stanford.smi.protege.util.Tree
getRootCls() - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getRootCls() - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getRootCls() - Method in class edu.stanford.smi.protege.model.SystemFrames
getRootClses() - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getRootClses() - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getRootClsMetaCls() - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getRootClsMetaCls() - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getRootClsMetaCls() - Method in class edu.stanford.smi.protege.model.SystemFrames
getRootFacetMetaCls() - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getRootFacetMetaCls() - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getRootFacetMetaCls() - Method in class edu.stanford.smi.protege.model.SystemFrames
getRootMetaCls() - Method in class edu.stanford.smi.protege.model.SystemFrames
getRoots() - Method in class edu.stanford.smi.protege.util.TreeSelectionHelper
getRootSlotMetaCls() - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getRootSlotMetaCls() - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getRootSlotMetaCls() - Method in class edu.stanford.smi.protege.model.SystemFrames
getRootSlots() - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getRootSlots() - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getRowCount() - Method in class edu.stanford.smi.protege.server.admin.UserInfoTableModel
getRowCount() - Method in class edu.stanford.smi.protege.util.RowTableModel
getRowCount() - Method in class edu.stanford.smi.protege.widget.PropertiesTableModel
getRowOfProperty(String) - Method in class edu.stanford.smi.protege.widget.PropertiesTableModel
getRowOfPropertyValue(String) - Method in class edu.stanford.smi.protege.widget.PropertiesTableModel
getSalt() - Method in class edu.stanford.smi.protege.server.metaproject.impl.UserImpl
getSalt() - Method in interface edu.stanford.smi.protege.server.metaproject.User
getSalt() - Method in class edu.stanford.smi.protege.util.DigestAndSalt
getSaveAction() - Method in class edu.stanford.smi.protege.widget.ProtegePropertiesComponent
getSaveIntervalMsec() - Method in class edu.stanford.smi.protege.server.Server
getSaveProjectIcon(boolean, boolean) - Static method in class edu.stanford.smi.protege.resource.Icons
getSaveProjectIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getSelectable() - Method in class edu.stanford.smi.protege.util.AllowableAction
getSelectable() - Method in class edu.stanford.smi.protege.util.SelectableContainer
getSelectable() - Method in class edu.stanford.smi.protege.util.SelectionEvent
getSelectClsAction() - Method in class edu.stanford.smi.protege.widget.ClsFieldWidget
getSelectedFactory() - Method in class edu.stanford.smi.protege.plugin.SelectProjectTypeWizardPage
getSelectedInstances() - Method in class edu.stanford.smi.protege.widget.AbstractTabWidget
getSelectedInstances() - Method in interface edu.stanford.smi.protege.widget.TabWidget
getSelectedPlugin() - Method in class edu.stanford.smi.protege.plugin.SelectOutputFormatWizardPage
getSelectedTab() - Method in class edu.stanford.smi.protege.ui.ProjectView
getSelectedValue() - Method in class edu.stanford.smi.protege.ui.PickSymbolPanel
getSelectedValue(JList) - Static method in class edu.stanford.smi.protege.util.ComponentUtilities
getSelectInstanceAction() - Method in class edu.stanford.smi.protege.widget.InstanceFieldWidget
getSelection() - Method in class edu.stanford.smi.protege.ui.ClsesPanel
getSelection() - Method in class edu.stanford.smi.protege.ui.SelectClsesPanel
getSelection() - Method in class edu.stanford.smi.protege.ui.SelectInstanceFromCollectionPanel
getSelection() - Method in class edu.stanford.smi.protege.ui.SelectInstancesFromCollectionPanel
getSelection() - Method in class edu.stanford.smi.protege.ui.SelectInstancesPanel
getSelection() - Method in class edu.stanford.smi.protege.util.AllowableAction
getSelection(JList) - Static method in class edu.stanford.smi.protege.util.ComponentUtilities
getSelection(JTable) - Static method in class edu.stanford.smi.protege.util.ComponentUtilities
getSelection(JTree) - Static method in class edu.stanford.smi.protege.util.ComponentUtilities
getSelection(JTree, Class) - Static method in class edu.stanford.smi.protege.util.ComponentUtilities
getSelection() - Method in class edu.stanford.smi.protege.util.FileList
getSelection() - Method in interface edu.stanford.smi.protege.util.Selectable
getSelection() - Method in class edu.stanford.smi.protege.util.SelectableContainer
getSelection() - Method in class edu.stanford.smi.protege.util.SelectableList
getSelection() - Method in class edu.stanford.smi.protege.util.SelectableTable
getSelection() - Method in class edu.stanford.smi.protege.util.SelectableTree
getSelection() - Method in class edu.stanford.smi.protege.util.URIList
getSelection() - Method in class edu.stanford.smi.protege.widget.AbstractListWidget
getSelection() - Method in class edu.stanford.smi.protege.widget.AbstractTableWidget
getSelection() - Method in class edu.stanford.smi.protege.widget.AbstractTabWidget
getSelection() - Method in class edu.stanford.smi.protege.widget.AbstractTreeWidget
getSelection() - Method in class edu.stanford.smi.protege.widget.AbstractWidget
getSelection() - Method in class edu.stanford.smi.protege.widget.ClsFieldWidget
getSelection() - Method in class edu.stanford.smi.protege.widget.FormWidget
getSelection() - Method in class edu.stanford.smi.protege.widget.InstanceFieldWidget
getSelection() - Method in class edu.stanford.smi.protege.widget.InstanceValuesComponent
getSelection() - Method in class edu.stanford.smi.protege.widget.InverseSlotWidget
getSelection() - Method in class edu.stanford.smi.protege.widget.ValueTypeWidget
getSelectionBorderSize() - Static method in class edu.stanford.smi.protege.widget.AbstractSlotWidget
getSelectProjectIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getSequence() - Method in class edu.stanford.smi.protege.server.framestore.background.WorkInfo
getSerialization() - Method in class edu.stanford.smi.protege.model.BrowserSlotPattern
getSerializedSize(Object) - Static method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
getServer() - Method in class edu.stanford.smi.protege.server.admin.AbstractRefreshableServerPanel
getServer() - Method in class edu.stanford.smi.protege.server.RemoteClientProject
getServer() - Method in class edu.stanford.smi.protege.server.ServerPanel
getServerInstanceByName(String) - Method in class edu.stanford.smi.protege.server.metaproject.impl.PolicyImpl
getServerInstanceByName(String) - Method in interface edu.stanford.smi.protege.server.metaproject.Policy
getServerPort(SSLFactory.Context) - Static method in class edu.stanford.smi.protege.server.socket.SSLFactory
getServerProject(JComponent, RemoteServer, RemoteSession) - Method in class edu.stanford.smi.protege.server.RemoteProjectManager
getServerProject(String) - Method in class edu.stanford.smi.protege.server.Server
getServerProject(Project) - Method in class edu.stanford.smi.protege.server.Server
GetServerProjectName - Class in edu.stanford.smi.protege.server.job
GetServerProjectName(KnowledgeBase) - Constructor for class edu.stanford.smi.protege.server.job.GetServerProjectName
getServers() - Method in class edu.stanford.smi.protege.server.metaproject.impl.MetaProjectImpl
getServers() - Method in interface edu.stanford.smi.protege.server.metaproject.MetaProject
getServerStats() - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
getSession() - Method in class edu.stanford.smi.protege.server.admin.AbstractRefreshableServerPanel
getSession(int) - Method in class edu.stanford.smi.protege.server.admin.UserInfoTableModel
getSession() - Method in class edu.stanford.smi.protege.server.framestore.background.ClientAndFrame
getSession() - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
getSession() - Method in class edu.stanford.smi.protege.server.RemoteClientProject
getSession() - Method in class edu.stanford.smi.protege.server.ServerPanel
getSession() - Method in class edu.stanford.smi.protege.util.ServerJob
getSession() - Method in class edu.stanford.smi.protege.util.SessionEvent
getSession() - Method in class edu.stanford.smi.protege.util.transaction.cache.serialize.SerializedCacheUpdate
getSessions() - Method in class edu.stanford.smi.protege.util.transaction.TransactionMonitor
GetSessionsJob - Class in edu.stanford.smi.protege.server.job
GetSessionsJob(RemoteServer, RemoteSession) - Constructor for class edu.stanford.smi.protege.server.job.GetSessionsJob
getSessionToKill() - Method in class edu.stanford.smi.protege.event.ServerProjectSessionClosedEvent
getSetMode() - Method in interface edu.stanford.smi.protege.code.generator.wrapping.JavaCodeGeneratorOptions
getSetMode() - Method in class edu.stanford.smi.protege.code.generator.wrapping.ProjectBasedJavaCodeGeneratorOptions
getSeverity() - Method in class edu.stanford.smi.protege.util.MessageError
getShortClassName(String) - Static method in class edu.stanford.smi.protege.util.StringUtilities
getShortcut(ResourceKey) - Static method in class edu.stanford.smi.protege.resource.LocalizedText
getShortDescription() - Method in class edu.stanford.smi.protege.widget.AbstractTabWidget
getShortDescription() - Method in interface edu.stanford.smi.protege.widget.TabWidget
getShortName() - Method in enum edu.stanford.smi.protege.storage.database.KnownDatabase
getShortValue(ResultSet, int, int, FrameFactory, int, boolean) - Static method in class edu.stanford.smi.protege.storage.database.DatabaseUtils
getShortValueType() - Method in enum edu.stanford.smi.protege.storage.database.KnownDatabase
getShortValueType() - Method in class edu.stanford.smi.protege.storage.database.RobustConnection
getShowNewInstances() - Method in class edu.stanford.smi.protege.widget.InstanceFieldWidget
getShowNewInstances() - Method in class edu.stanford.smi.protege.widget.InstanceListWidget
getSimpleInstance(String) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getSimpleInstance(String) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getSimpleInstanceCount() - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getSimpleInstanceCount() - Method in class edu.stanford.smi.protege.model.framestore.ArgumentCheckingFrameStore
getSimpleInstanceCount() - Method in class edu.stanford.smi.protege.model.framestore.ClosureCachingBasicFrameStore
getSimpleInstanceCount() - Method in interface edu.stanford.smi.protege.model.framestore.FrameStore
getSimpleInstanceCount() - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreAdapter
getSimpleInstanceCount() - Method in class edu.stanford.smi.protege.model.framestore.ImmutableNamesNarrowFrameStore
getSimpleInstanceCount() - Method in class edu.stanford.smi.protege.model.framestore.InMemoryFrameDb
getSimpleInstanceCount() - Method in class edu.stanford.smi.protege.model.framestore.MergingNarrowFrameStore
getSimpleInstanceCount() - Method in class edu.stanford.smi.protege.model.framestore.ModificationFrameStore
getSimpleInstanceCount() - Method in interface edu.stanford.smi.protege.model.framestore.NarrowFrameStore
getSimpleInstanceCount() - Method in class edu.stanford.smi.protege.model.framestore.PlaceHolderNarrowFrameStore
getSimpleInstanceCount() - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
getSimpleInstanceCount() - Method in class edu.stanford.smi.protege.model.framestore.TemplateFrameStore
getSimpleInstanceCount() - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getSimpleInstanceCount() - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
getSimpleInstanceCount(RemoteSession) - Method in interface edu.stanford.smi.protege.server.framestore.RemoteServerFrameStore
getSimpleInstanceCount(RemoteSession) - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
getSimpleInstanceCount(RemoteSession) - Method in interface edu.stanford.smi.protege.server.narrowframestore.RemoteServerNarrowFrameStore
getSimpleInstanceCount(RemoteSession) - Method in class edu.stanford.smi.protege.server.narrowframestore.ServerNarrowFrameStore
getSimpleInstanceCount() - Method in class edu.stanford.smi.protege.storage.database.DefaultDatabaseFrameDb
getSimpleInstanceCount() - Method in class edu.stanford.smi.protege.storage.database.IdleConnectionNarrowFrameStore
getSimpleInstanceCount() - Method in class edu.stanford.smi.protege.storage.database.ValueCachingNarrowFrameStore
getSimpleInstanceJavaClassIds() - Method in interface edu.stanford.smi.protege.model.FrameFactory
getSimpleInstanceJavaClassIds() - Method in class edu.stanford.smi.protege.model.framestore.DefaultFrameFactory
getSimpleName() - Method in class edu.stanford.smi.protege.util.PathSplitter
getSize() - Method in class edu.stanford.smi.protege.server.socket.deflate.PacketHeader
getSize() - Method in class edu.stanford.smi.protege.util.ConcurrentListModel
getSize(Container) - Static method in class edu.stanford.smi.protege.util.ResizingLayout
getSize() - Method in class edu.stanford.smi.protege.util.SimpleListModel
getSlot() - Method in class edu.stanford.smi.protege.code.generator.wrapping.SlotAtClassCode
getSlot() - Method in class edu.stanford.smi.protege.event.ClsEvent
getSlot() - Method in class edu.stanford.smi.protege.event.FacetEvent
getSlot() - Method in class edu.stanford.smi.protege.event.FrameEvent
getSlot() - Method in class edu.stanford.smi.protege.event.KnowledgeBaseEvent
getSlot() - Method in class edu.stanford.smi.protege.event.SlotEvent
getSlot(String) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getSlot() - Method in class edu.stanford.smi.protege.model.FrameSlotCombination
getSlot() - Method in class edu.stanford.smi.protege.model.framestore.Record
getSlot() - Method in class edu.stanford.smi.protege.model.framestore.ReferenceImpl
getSlot() - Method in class edu.stanford.smi.protege.model.framestore.Sft
getSlot() - Method in class edu.stanford.smi.protege.model.framestore.undo.DeleteSlotCommand
getSlot(String) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getSlot() - Method in interface edu.stanford.smi.protege.model.Reference
getSlot(MetaProjectImpl.SlotEnum) - Method in class edu.stanford.smi.protege.server.metaproject.impl.MetaProjectImpl
getSlot(ResultSet, int, FrameFactory, boolean) - Static method in class edu.stanford.smi.protege.storage.database.DatabaseUtils
getSlot() - Method in class edu.stanford.smi.protege.ui.RelationshipPane
getSlot() - Method in class edu.stanford.smi.protege.ui.SlotSubslotNode
getSlot() - Method in class edu.stanford.smi.protege.widget.AbstractSlotWidget
getSlot() - Method in interface edu.stanford.smi.protege.widget.SlotWidget
getSlotCodes(boolean) - Method in class edu.stanford.smi.protege.code.generator.wrapping.ClsCode
getSlotColor() - Static method in class edu.stanford.smi.protege.resource.Colors
getSlotConstraintsSlot() - Method in class edu.stanford.smi.protege.model.SystemFrames
getSlotCount() - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getSlotCount() - Method in class edu.stanford.smi.protege.model.framestore.ArgumentCheckingFrameStore
getSlotCount() - Method in class edu.stanford.smi.protege.model.framestore.ClosureCachingBasicFrameStore
getSlotCount() - Method in interface edu.stanford.smi.protege.model.framestore.FrameStore
getSlotCount() - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreAdapter
getSlotCount() - Method in class edu.stanford.smi.protege.model.framestore.ImmutableNamesNarrowFrameStore
getSlotCount() - Method in class edu.stanford.smi.protege.model.framestore.InMemoryFrameDb
getSlotCount() - Method in class edu.stanford.smi.protege.model.framestore.MergingNarrowFrameStore
getSlotCount() - Method in class edu.stanford.smi.protege.model.framestore.ModificationFrameStore
getSlotCount() - Method in interface edu.stanford.smi.protege.model.framestore.NarrowFrameStore
getSlotCount() - Method in class edu.stanford.smi.protege.model.framestore.PlaceHolderNarrowFrameStore
getSlotCount() - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
getSlotCount() - Method in class edu.stanford.smi.protege.model.framestore.TemplateFrameStore
getSlotCount() - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getSlotCount() - Method in interface edu.stanford.smi.protege.model.Storage
getSlotCount() - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
getSlotCount(RemoteSession) - Method in interface edu.stanford.smi.protege.server.framestore.RemoteServerFrameStore
getSlotCount(RemoteSession) - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
getSlotCount(RemoteSession) - Method in interface edu.stanford.smi.protege.server.narrowframestore.RemoteServerNarrowFrameStore
getSlotCount(RemoteSession) - Method in class edu.stanford.smi.protege.server.narrowframestore.ServerNarrowFrameStore
getSlotCount() - Method in class edu.stanford.smi.protege.storage.database.DefaultDatabaseFrameDb
getSlotCount() - Method in class edu.stanford.smi.protege.storage.database.IdleConnectionNarrowFrameStore
getSlotCount() - Method in class edu.stanford.smi.protege.storage.database.ValueCachingNarrowFrameStore
getSlotDelimiter() - Method in class edu.stanford.smi.protege.ui.ExportConfigurationPanel
getSlotHideNoteIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getSlotIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getSlotIcon(boolean, boolean, boolean, boolean) - Static method in class edu.stanford.smi.protege.resource.Icons
getSlotImage() - Static method in class edu.stanford.smi.protege.resource.Icons
getSlotJavaClassIds() - Method in interface edu.stanford.smi.protege.model.FrameFactory
getSlotJavaClassIds() - Method in class edu.stanford.smi.protege.model.framestore.DefaultFrameFactory
getSlotNoteIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getSlots() - Method in class edu.stanford.smi.protege.model.BrowserSlotPattern
getSlots() - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getSlots() - Method in class edu.stanford.smi.protege.model.framestore.ArgumentCheckingFrameStore
getSlots() - Method in interface edu.stanford.smi.protege.model.framestore.FrameStore
getSlots() - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreAdapter
getSlots() - Method in class edu.stanford.smi.protege.model.framestore.ModificationFrameStore
getSlots() - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
getSlots() - Method in class edu.stanford.smi.protege.model.framestore.TemplateFrameStore
getSlots() - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getSlots() - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
getSlots(Cls) - Method in class edu.stanford.smi.protege.widget.TemplateSlotsWidget
getSlotsDelimiter() - Method in class edu.stanford.smi.protege.action.ExportToCsvAction
getSlotsDelimiter() - Static method in class edu.stanford.smi.protege.action.ExportToCsvUtil
getSlotSelectionColor() - Static method in class edu.stanford.smi.protege.resource.Colors
getSlotsIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getSlotsToDelete(Slot) - Method in class edu.stanford.smi.protege.model.framestore.DeleteSimplificationFrameStore
getSlotsToExport() - Method in class edu.stanford.smi.protege.action.ExportToCsvAction
getSlotValue(MetaProjectImpl.SlotEnum, MetaProjectImpl.ClsEnum) - Method in class edu.stanford.smi.protege.server.metaproject.impl.WrappedProtegeInstanceImpl
getSlotValueLastModificationTimestamp(Frame, Slot, boolean) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
  Deprecated. this functionality is no longer available
getSlotValueLastModificationTimestamp(Frame, Slot, boolean) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getSlotValueLastModifier(Frame, Slot, boolean) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
  Deprecated. this functionality is no longer available
getSlotValueLastModifier(Frame, Slot, boolean) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getSlotValues(MetaProjectImpl.SlotEnum, MetaProjectImpl.ClsEnum) - Method in class edu.stanford.smi.protege.server.metaproject.impl.WrappedProtegeInstanceImpl
getSlotValuesDelimiter() - Method in class edu.stanford.smi.protege.action.ExportToCsvAction
getSlotValuesDelimiter() - Static method in class edu.stanford.smi.protege.action.ExportToCsvUtil
getSlotValuesDelimiter() - Method in class edu.stanford.smi.protege.ui.ExportConfigurationPanel
getSlotValuesExportString(Instance, Slot) - Method in class edu.stanford.smi.protege.action.ExportToCsvAction
getSlotWidget(Slot) - Method in interface edu.stanford.smi.protege.widget.ClsWidget
getSlotWidget(Slot) - Method in class edu.stanford.smi.protege.widget.FormWidget
getSlotWidget(Slot) - Method in class edu.stanford.smi.protege.widget.UglyClsWidget
getSmallIntType() - Method in enum edu.stanford.smi.protege.storage.database.KnownDatabase
getSmallIntTypeName() - Method in class edu.stanford.smi.protege.storage.database.RobustConnection
getSoleAllowedCls() - Method in class edu.stanford.smi.protege.ui.DirectInstancesList
getSoleItem(Collection<X>) - Static method in class edu.stanford.smi.protege.util.CollectionUtilities
  Returns the first item in the collection.
getSoleSelection() - Method in class edu.stanford.smi.protege.util.SelectableContainer
getSortClassTreeOption() - Static method in class edu.stanford.smi.protege.util.ApplicationProperties
getSortSlotTreeOption() - Static method in class edu.stanford.smi.protege.util.ApplicationProperties
getSource() - Method in interface edu.stanford.smi.protege.event.Event
getSource() - Method in class edu.stanford.smi.protege.util.AbstractEvent
getSourceFile(PropertyList) - Static method in class edu.stanford.smi.protege.storage.xml.XMLKnowledgeBaseFactory
getSourceReader(KnowledgeBase, PropertyList, Collection) - Method in class edu.stanford.smi.protege.storage.xml.XMLKnowledgeBaseFactory
getSourceRelativeURI(PropertyList) - Static method in class edu.stanford.smi.protege.storage.xml.XMLKnowledgeBaseFactory
getSources() - Method in class edu.stanford.smi.protege.model.KnowledgeBaseSourcesEditor
getSources() - Method in class edu.stanford.smi.protege.model.Project
getSources() - Method in class edu.stanford.smi.protege.util.ListenerCollection
getSources() - Method in class edu.stanford.smi.protege.util.ListenerList
getSources() - Method in class edu.stanford.smi.protege.util.ListenerMap
getSourceUri(String, PropertyList, KnowledgeBase) - Method in class edu.stanford.smi.protege.model.AbstractKnowledgeBaseFactory
getSpecificObject(KnowledgeBase, Instance, Class<? extends X>) - Static method in class edu.stanford.smi.protege.code.generator.wrapping.OntologyJavaMappingUtil
getStandardClsMetaCls() - Method in class edu.stanford.smi.protege.model.SystemFrames
getStandardColumnWidth() - Static method in class edu.stanford.smi.protege.util.ComponentUtilities
getStandardFacetMetaCls() - Method in class edu.stanford.smi.protege.model.SystemFrames
getStandardRowHeight() - Static method in class edu.stanford.smi.protege.util.ComponentUtilities
getStandardSlotMetaCls() - Method in class edu.stanford.smi.protege.model.SystemFrames
getStartTime() - Method in interface edu.stanford.smi.protege.server.RemoteSession
getStartTime() - Method in class edu.stanford.smi.protege.server.Session
getStatement() - Method in class edu.stanford.smi.protege.storage.database.pool.ConnectionInfo
getStatement(Connection) - Method in class edu.stanford.smi.protege.storage.database.pool.ConnectionPool
getStatement() - Method in class edu.stanford.smi.protege.storage.database.RobustConnection
getStates() - Method in class edu.stanford.smi.protege.server.framestore.background.WorkInfo
getStats() - Method in class edu.stanford.smi.protege.server.framestore.background.FrameCalculator
getStats() - Method in interface edu.stanford.smi.protege.server.framestore.RemoteServerFrameStore
getStats() - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
getStatus() - Static method in class edu.stanford.smi.protege.resource.Text
getStatus() - Method in class edu.stanford.smi.protege.server.framestore.background.ClientCacheRequestor.RequestorThread
getString(String) - Static method in class edu.stanford.smi.protege.util.ApplicationProperties
getString(String, String) - Static method in class edu.stanford.smi.protege.util.ApplicationProperties
getString(String) - Method in class edu.stanford.smi.protege.util.PropertyList
getStringMatcher(String) - Method in class edu.stanford.smi.protege.ui.FrameTreeFinder
getStringProperty(String, String) - Method in class edu.stanford.smi.protege.widget.AbstractWidget
getStringTransferData() - Method in class edu.stanford.smi.protege.util.TransferableCollection
getStringValueType() - Static method in class edu.stanford.smi.protege.storage.database.DatabaseUtils
getSubclass() - Method in class edu.stanford.smi.protege.event.ClsEvent
getSubclasses() - Method in interface edu.stanford.smi.protege.model.Cls
  Get all descendent classes for this class.
getSubclasses() - Method in class edu.stanford.smi.protege.model.DefaultCls
getSubclasses(Cls) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getSubclasses(Cls) - Method in class edu.stanford.smi.protege.model.framestore.ArgumentCheckingFrameStore
getSubclasses(Cls) - Method in interface edu.stanford.smi.protege.model.framestore.FrameStore
getSubclasses(Cls) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreAdapter
getSubclasses(Cls) - Method in class edu.stanford.smi.protege.model.framestore.ModificationFrameStore
getSubclasses(Cls) - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
getSubclasses(Cls) - Method in class edu.stanford.smi.protege.model.framestore.TemplateFrameStore
getSubclasses(Cls) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getSubclasses(Cls) - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
getSubclassPane() - Method in class edu.stanford.smi.protege.ui.ClsesPanel
getSubslot() - Method in class edu.stanford.smi.protege.event.SlotEvent
getSubslots(Slot) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getSubslots() - Method in class edu.stanford.smi.protege.model.DefaultSlot
getSubslots(Slot) - Method in class edu.stanford.smi.protege.model.framestore.ArgumentCheckingFrameStore
getSubslots(Slot) - Method in interface edu.stanford.smi.protege.model.framestore.FrameStore
getSubslots(Slot) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreAdapter
getSubslots(Slot) - Method in class edu.stanford.smi.protege.model.framestore.ModificationFrameStore
getSubslots(Slot) - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
getSubslots(Slot) - Method in class edu.stanford.smi.protege.model.framestore.TemplateFrameStore
getSubslots(Slot) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getSubslots() - Method in interface edu.stanford.smi.protege.model.Slot
getSubslots(Slot) - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
GetSuffix(int) - Method in class edu.stanford.smi.protege.storage.clips.SimpleCharStream
  Get the suffix.
getSuffixes() - Method in interface edu.stanford.smi.protege.plugin.CreateProjectFromFilePlugin
getSuitableWidgetClassNames(Cls, Slot, Facet) - Method in class edu.stanford.smi.protege.model.Project
getSuitableWidgetClassNames(Cls, Slot, Facet) - Method in class edu.stanford.smi.protege.widget.DefaultWidgetMapper
getSuitableWidgetClassNames(Cls, Slot, Facet) - Method in interface edu.stanford.smi.protege.widget.WidgetMapper
getSuperclass() - Method in class edu.stanford.smi.protege.event.ClsEvent
getSuperclasses() - Method in interface edu.stanford.smi.protege.model.Cls
  Get all ancestors classes for this class.
getSuperclasses() - Method in class edu.stanford.smi.protege.model.DefaultCls
getSuperclasses(Cls) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getSuperclasses(Cls) - Method in class edu.stanford.smi.protege.model.framestore.ArgumentCheckingFrameStore
getSuperclasses(Cls) - Method in interface edu.stanford.smi.protege.model.framestore.FrameStore
getSuperclasses(Cls) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreAdapter
getSuperclasses(Cls) - Method in class edu.stanford.smi.protege.model.framestore.ModificationFrameStore
getSuperclasses(Cls) - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
getSuperclasses(Cls) - Method in class edu.stanford.smi.protege.model.framestore.TemplateFrameStore
getSuperclasses(Cls) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getSuperclasses(Cls) - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
getSuperclassesToExport(Instance) - Method in class edu.stanford.smi.protege.action.ExportToCsvAction
getSuperslot() - Method in class edu.stanford.smi.protege.event.SlotEvent
getSuperslots(Slot) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getSuperslots() - Method in class edu.stanford.smi.protege.model.DefaultSlot
getSuperslots(Slot) - Method in class edu.stanford.smi.protege.model.framestore.ArgumentCheckingFrameStore
getSuperslots(Slot) - Method in interface edu.stanford.smi.protege.model.framestore.FrameStore
getSuperslots(Slot) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreAdapter
getSuperslots(Slot) - Method in class edu.stanford.smi.protege.model.framestore.ModificationFrameStore
getSuperslots(Slot) - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
getSuperslots(Slot) - Method in class edu.stanford.smi.protege.model.framestore.TemplateFrameStore
getSuperslots(Slot) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getSuperslots() - Method in interface edu.stanford.smi.protege.model.Slot
getSuperslots(Slot) - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
getSupported() - Method in enum edu.stanford.smi.protege.storage.database.KnownDatabase
getSuppressInstanceCounting() - Method in class edu.stanford.smi.protege.model.Project
getSystemBooleanProperty(String) - Static method in class edu.stanford.smi.protege.util.SystemUtilities
getSystemBooleanProperty(String, boolean) - Static method in class edu.stanford.smi.protege.util.SystemUtilities
getSystemCls() - Method in class edu.stanford.smi.protege.model.SystemFrames
getSystemClsCount() - Method in interface edu.stanford.smi.protege.model.FrameCounts
getSystemClsCount() - Method in class edu.stanford.smi.protege.model.FrameCountsImpl
getSystemClsesReader() - Static method in class edu.stanford.smi.protege.resource.Files
getSystemFacetCount() - Method in interface edu.stanford.smi.protege.model.FrameCounts
getSystemFacetCount() - Method in class edu.stanford.smi.protege.model.FrameCountsImpl
getSystemFrameCount() - Method in interface edu.stanford.smi.protege.model.FrameCounts
getSystemFrameCount() - Method in class edu.stanford.smi.protege.model.FrameCountsImpl
getSystemFrames() - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getSystemFrames() - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getSystemFrameStore(KnowledgeBase) - Static method in class edu.stanford.smi.protege.model.framestore.MergingNarrowFrameStore
getSystemFrameStore() - Method in class edu.stanford.smi.protege.model.framestore.MergingNarrowFrameStore
getSystemInstancesReader() - Static method in class edu.stanford.smi.protege.resource.Files
getSystemIntegerProperty(String) - Static method in class edu.stanford.smi.protege.util.SystemUtilities
getSystemIntegerProperty(String, int) - Static method in class edu.stanford.smi.protege.util.SystemUtilities
getSystemLocale() - Static method in class edu.stanford.smi.protege.util.SystemUtilities
getSystemProperty(String) - Static method in class edu.stanford.smi.protege.util.SystemUtilities
getSystemProperty(String, String) - Static method in class edu.stanford.smi.protege.util.SystemUtilities
getSystemSimpleInstanceCount() - Method in interface edu.stanford.smi.protege.model.FrameCounts
getSystemSimpleInstanceCount() - Method in class edu.stanford.smi.protege.model.FrameCountsImpl
getSystemSlotCount() - Method in interface edu.stanford.smi.protege.model.FrameCounts
getSystemSlotCount() - Method in class edu.stanford.smi.protege.model.FrameCountsImpl
getTab(String) - Method in class edu.stanford.smi.protege.ui.ProjectView
  Deprecated. Use #getTabByClassName(String)
getTab(String) - Method in class edu.stanford.smi.protege.util.ValidatableTabComponent
getTabbedInstanceFormLayout() - Method in class edu.stanford.smi.protege.model.Project
getTabbedPane() - Method in class edu.stanford.smi.protege.ui.ProjectView
  Deprecated. returns null. Use the other methods on this class to manipulate views.
getTabbedPane() - Method in class edu.stanford.smi.protege.util.ValidatableTabComponent
getTabByClassName(String) - Method in class edu.stanford.smi.protege.ui.ProjectView
getTable() - Method in class edu.stanford.smi.protege.storage.database.DefaultDatabaseFrameDb
getTable() - Method in class edu.stanford.smi.protege.widget.AbstractTableWidget
getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class edu.stanford.smi.protege.ui.CheckBoxRenderer
getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class edu.stanford.smi.protege.util.DefaultRenderer
getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class edu.stanford.smi.protege.widget.TextAreaRenderer
getTableName() - Method in class edu.stanford.smi.protege.storage.database.AbstractDatabaseFrameDb
getTableName() - Method in interface edu.stanford.smi.protege.storage.database.DatabaseFrameDb
getTableName(PropertyList) - Static method in class edu.stanford.smi.protege.storage.database.DatabaseKnowledgeBaseFactory
getTabs() - Method in class edu.stanford.smi.protege.ui.ProjectView
getTabSize(int) - Method in class edu.stanford.smi.protege.storage.clips.SimpleCharStream
getTabWidgetDescriptor(String) - Method in class edu.stanford.smi.protege.model.Project
getTabWidgetDescriptors() - Method in class edu.stanford.smi.protege.model.Project
getTemplateFacets(Slot) - Method in interface edu.stanford.smi.protege.model.Cls
getTemplateFacets(Slot) - Method in class edu.stanford.smi.protege.model.DefaultCls
getTemplateFacets(Cls, Slot) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getTemplateFacets(Cls, Slot) - Method in class edu.stanford.smi.protege.model.framestore.ArgumentCheckingFrameStore
getTemplateFacets(Cls, Slot) - Method in interface edu.stanford.smi.protege.model.framestore.FrameStore
getTemplateFacets(Cls, Slot) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreAdapter
getTemplateFacets(Cls, Slot) - Method in class edu.stanford.smi.protege.model.framestore.ModificationFrameStore
getTemplateFacets(Cls, Slot) - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
getTemplateFacets(Cls, Slot) - Method in class edu.stanford.smi.protege.model.framestore.TemplateFrameStore
getTemplateFacets(Cls, Slot) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getTemplateFacets(Cls, Slot) - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
getTemplateFacets(Cls, Slot, RemoteSession) - Method in interface edu.stanford.smi.protege.server.framestore.RemoteServerFrameStore
getTemplateFacets(Cls, Slot, RemoteSession) - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
getTemplateFacetValue(Slot, Facet) - Method in interface edu.stanford.smi.protege.model.Cls
  see `Frame` for a description of the return type
getTemplateFacetValue(Slot, Facet) - Method in class edu.stanford.smi.protege.model.DefaultCls
getTemplateFacetValue(Cls, Slot, Facet) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getTemplateFacetValue(Cls, Slot, Facet) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getTemplateFacetValue(Cls, Slot, String) - Static method in class edu.stanford.smi.protege.model.ModelUtilities
getTemplateFacetValues(Slot, Facet) - Method in interface edu.stanford.smi.protege.model.Cls
  see `Frame` for a description of the return type
getTemplateFacetValues(Slot, Facet) - Method in class edu.stanford.smi.protege.model.DefaultCls
getTemplateFacetValues(Cls, Slot, Facet) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getTemplateFacetValues(Cls, Slot, Facet) - Method in class edu.stanford.smi.protege.model.framestore.ArgumentCheckingFrameStore
getTemplateFacetValues(Cls, Slot, Facet) - Method in interface edu.stanford.smi.protege.model.framestore.FrameStore
getTemplateFacetValues(Cls, Slot, Facet) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreAdapter
getTemplateFacetValues(Cls, Slot, Facet) - Method in class edu.stanford.smi.protege.model.framestore.ModificationFrameStore
getTemplateFacetValues(Cls, Slot, Facet) - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
getTemplateFacetValues(Cls, Slot, Facet) - Method in class edu.stanford.smi.protege.model.framestore.TemplateFrameStore
getTemplateFacetValues(Cls, Slot, Facet) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getTemplateFacetValues(Cls, Slot, String) - Static method in class edu.stanford.smi.protege.model.ModelUtilities
getTemplateFacetValues(Cls, Slot, Facet) - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
getTemplateFacetValues(Cls, Slot, Facet, RemoteSession) - Method in interface edu.stanford.smi.protege.server.framestore.RemoteServerFrameStore
getTemplateFacetValues(Cls, Slot, Facet, RemoteSession) - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
getTemplateSlotAllowedClses(Slot) - Method in interface edu.stanford.smi.protege.model.Cls
getTemplateSlotAllowedClses(Slot) - Method in class edu.stanford.smi.protege.model.DefaultCls
getTemplateSlotAllowedClses(Cls, Slot) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getTemplateSlotAllowedClses(Cls, Slot) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getTemplateSlotAllowedParents(Slot) - Method in interface edu.stanford.smi.protege.model.Cls
getTemplateSlotAllowedParents(Slot) - Method in class edu.stanford.smi.protege.model.DefaultCls
getTemplateSlotAllowedParents(Cls, Slot) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getTemplateSlotAllowedParents(Cls, Slot) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getTemplateSlotAllowedValues(Slot) - Method in interface edu.stanford.smi.protege.model.Cls
getTemplateSlotAllowedValues(Slot) - Method in class edu.stanford.smi.protege.model.DefaultCls
getTemplateSlotAllowedValues(Cls, Slot) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getTemplateSlotAllowedValues(Cls, Slot) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getTemplateSlotAllowsMultipleValues(Slot) - Method in interface edu.stanford.smi.protege.model.Cls
getTemplateSlotAllowsMultipleValues(Slot) - Method in class edu.stanford.smi.protege.model.DefaultCls
getTemplateSlotAllowsMultipleValues(Cls, Slot) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getTemplateSlotAllowsMultipleValues(Cls, Slot) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getTemplateSlotClses() - Method in class edu.stanford.smi.protege.model.DefaultSlot
  Deprecated.
getTemplateSlotClses() - Method in interface edu.stanford.smi.protege.model.Slot
  Deprecated. Use #getDirectDomain()
getTemplateSlotDefaultValues(Slot) - Method in interface edu.stanford.smi.protege.model.Cls
getTemplateSlotDefaultValues(Slot) - Method in class edu.stanford.smi.protege.model.DefaultCls
getTemplateSlotDefaultValues(Cls, Slot) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getTemplateSlotDefaultValues(Cls, Slot) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getTemplateSlotDocumentation(Slot) - Method in interface edu.stanford.smi.protege.model.Cls
  Get free text documentation for this template slot.
getTemplateSlotDocumentation(Slot) - Method in class edu.stanford.smi.protege.model.DefaultCls
getTemplateSlotDocumentation(Cls, Slot) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getTemplateSlotDocumentation(Cls, Slot) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getTemplateSlotMaximumCardinality(Slot) - Method in interface edu.stanford.smi.protege.model.Cls
  returns 0 if there is no maximum cardinality
getTemplateSlotMaximumCardinality(Slot) - Method in class edu.stanford.smi.protege.model.DefaultCls
getTemplateSlotMaximumCardinality(Cls, Slot) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getTemplateSlotMaximumCardinality(Cls, Slot) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getTemplateSlotMaximumCardinality2(Cls, Slot) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getTemplateSlotMaximumValue(Slot) - Method in interface edu.stanford.smi.protege.model.Cls
getTemplateSlotMaximumValue(Slot) - Method in class edu.stanford.smi.protege.model.DefaultCls
getTemplateSlotMaximumValue(Cls, Slot) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getTemplateSlotMaximumValue(Cls, Slot) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getTemplateSlotMinimumCardinality(Slot) - Method in interface edu.stanford.smi.protege.model.Cls
getTemplateSlotMinimumCardinality(Slot) - Method in class edu.stanford.smi.protege.model.DefaultCls
getTemplateSlotMinimumCardinality(Cls, Slot) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getTemplateSlotMinimumCardinality(Cls, Slot) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getTemplateSlotMinimumCardinality2(Cls, Slot) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getTemplateSlotMinimumValue(Slot) - Method in interface edu.stanford.smi.protege.model.Cls
getTemplateSlotMinimumValue(Slot) - Method in class edu.stanford.smi.protege.model.DefaultCls
getTemplateSlotMinimumValue(Cls, Slot) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getTemplateSlotMinimumValue(Cls, Slot) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getTemplateSlots() - Method in interface edu.stanford.smi.protege.model.Cls
getTemplateSlots() - Method in class edu.stanford.smi.protege.model.DefaultCls
getTemplateSlots(Cls) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getTemplateSlots(Cls) - Method in class edu.stanford.smi.protege.model.framestore.ArgumentCheckingFrameStore
getTemplateSlots(Cls) - Method in interface edu.stanford.smi.protege.model.framestore.FrameStore
getTemplateSlots(Cls) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreAdapter
getTemplateSlots(Cls) - Method in class edu.stanford.smi.protege.model.framestore.ModificationFrameStore
getTemplateSlots(Cls) - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
getTemplateSlots(Cls) - Method in class edu.stanford.smi.protege.model.framestore.TemplateFrameStore
getTemplateSlots(Cls) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getTemplateSlots(Cls) - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
getTemplateSlotValue(Slot) - Method in interface edu.stanford.smi.protege.model.Cls
  see `Frame` for a description of the return type
getTemplateSlotValue(Slot) - Method in class edu.stanford.smi.protege.model.DefaultCls
getTemplateSlotValue(Cls, Slot) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getTemplateSlotValue(Cls, Slot) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getTemplateSlotValues(Slot) - Method in interface edu.stanford.smi.protege.model.Cls
  see `Frame` for a description of the return type
getTemplateSlotValues(Slot) - Method in class edu.stanford.smi.protege.model.DefaultCls
getTemplateSlotValues(Cls, Slot) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getTemplateSlotValues(Cls, Slot) - Method in class edu.stanford.smi.protege.model.framestore.ArgumentCheckingFrameStore
getTemplateSlotValues(Cls, Slot) - Method in interface edu.stanford.smi.protege.model.framestore.FrameStore
getTemplateSlotValues(Cls, Slot) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreAdapter
getTemplateSlotValues(Cls, Slot) - Method in class edu.stanford.smi.protege.model.framestore.ModificationFrameStore
getTemplateSlotValues(Cls, Slot) - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
getTemplateSlotValues(Cls, Slot) - Method in class edu.stanford.smi.protege.model.framestore.TemplateFrameStore
getTemplateSlotValues(Cls, Slot) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getTemplateSlotValues(Cls, Slot) - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
getTemplateSlotValueType(Slot) - Method in interface edu.stanford.smi.protege.model.Cls
getTemplateSlotValueType(Slot) - Method in class edu.stanford.smi.protege.model.DefaultCls
getTemplateSlotValueType(Cls, Slot) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getTemplateSlotValueType(Cls, Slot) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getTerminalFrameStore() - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getTerminalFrameStore() - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreManager
getText(ResourceKey) - Method in class edu.stanford.smi.protege.resource.BundleHelper
getText(ResourceKey, String) - Method in class edu.stanford.smi.protege.resource.BundleHelper
getText(ResourceKey, String, String) - Method in class edu.stanford.smi.protege.resource.BundleHelper
getText(ResourceKey) - Static method in class edu.stanford.smi.protege.resource.LocalizedText
getText(ResourceKey, String) - Static method in class edu.stanford.smi.protege.resource.LocalizedText
getText(ResourceKey, String, String) - Static method in class edu.stanford.smi.protege.resource.LocalizedText
getText() - Method in class edu.stanford.smi.protege.ui.EditStringPanel
getText() - Method in class edu.stanford.smi.protege.widget.TextComponentWidget
getTextArea() - Method in class edu.stanford.smi.protege.widget.TextAreaWidget
getTextColor() - Method in class edu.stanford.smi.protege.util.DefaultRenderer
getTextComponent() - Method in class edu.stanford.smi.protege.widget.TextComponentWidget
getTextField() - Method in class edu.stanford.smi.protege.widget.TextFieldWidget
getTextIconGap() - Method in class edu.stanford.smi.protege.util.DefaultRenderer
getTextTextGap() - Method in class edu.stanford.smi.protege.util.DefaultRenderer
getTimeStamp() - Method in interface edu.stanford.smi.protege.event.Event
getTimeStamp() - Method in class edu.stanford.smi.protege.util.AbstractEvent
getTimestamp() - Method in class edu.stanford.smi.protege.util.ArchiveRecord
getTitle() - Method in enum edu.stanford.smi.protege.storage.database.DatabaseProperty
getTitle() - Method in class edu.stanford.smi.protege.ui.CommandHistoryPanel
getToken(int) - Method in class edu.stanford.smi.protege.storage.clips.Parser
  Get the specific Token.
getToolBar() - Method in class edu.stanford.smi.protege.ui.HeaderComponent
getToolTipText() - Method in class edu.stanford.smi.protege.ui.SlotPairRenderer
getTopFrameStore() - Method in class edu.stanford.smi.protege.model.framestore.MergingNarrowFrameStore
getTopLevelInstance() - Method in class edu.stanford.smi.protege.widget.KAToolTab
getToSlot() - Method in class edu.stanford.smi.protege.model.SystemFrames
getTotalClsCount() - Method in interface edu.stanford.smi.protege.model.FrameCounts
getTotalClsCount() - Method in class edu.stanford.smi.protege.model.FrameCountsImpl
getTotalFacetCount() - Method in interface edu.stanford.smi.protege.model.FrameCounts
getTotalFacetCount() - Method in class edu.stanford.smi.protege.model.FrameCountsImpl
getTotalFrameCount() - Method in interface edu.stanford.smi.protege.model.FrameCounts
getTotalFrameCount() - Method in class edu.stanford.smi.protege.model.FrameCountsImpl
getTotalSimpleInstanceCount() - Method in interface edu.stanford.smi.protege.model.FrameCounts
getTotalSimpleInstanceCount() - Method in class edu.stanford.smi.protege.model.FrameCountsImpl
getTotalSlotCount() - Method in interface edu.stanford.smi.protege.model.FrameCounts
getTotalSlotCount() - Method in class edu.stanford.smi.protege.model.FrameCountsImpl
getTraceCount() - Method in class edu.stanford.smi.protege.util.DefaultLogger
getTrademark() - Static method in class edu.stanford.smi.protege.resource.Text
getTransactionIsolationLevel(KnowledgeBase) - Static method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
getTransactionIsolationLevel() - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
getTransactionIsolationLevel() - Method in interface edu.stanford.smi.protege.server.framestore.RemoteServerFrameStore
getTransactionIsolationLevel() - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
  Calculates the transaction isolation level.
getTransactionIsolationLevel() - Method in class edu.stanford.smi.protege.storage.database.RobustConnection
GetTransactionIsolationLevelJob - Class in edu.stanford.smi.protege.server.job
GetTransactionIsolationLevelJob(RemoteServer, RemoteSession, String) - Constructor for class edu.stanford.smi.protege.server.job.GetTransactionIsolationLevelJob
getTransactionLevel(int) - Static method in enum edu.stanford.smi.protege.util.transaction.TransactionIsolationLevel
getTransactionNesting(RemoteSession) - Method in class edu.stanford.smi.protege.server.update.DeferredOperationCache
getTransactionNesting(S) - Method in interface edu.stanford.smi.protege.util.transaction.cache.Cache
  Returns the transaction nesting for a session.
getTransactionNesting(S) - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.BasicCache
getTransactionNesting(S) - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.CompleteableCache
getTransactionNesting(S) - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.InvalidatableCache
getTransactionNesting(S) - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.ReadCommittedCache
getTransactionNesting(S) - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.ReadUncommittedCache
getTransactionNesting(S) - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.RepeatableReadCache
getTransactionStatusMonitor() - Method in class edu.stanford.smi.protege.model.framestore.ArgumentCheckingFrameStore
getTransactionStatusMonitor() - Method in class edu.stanford.smi.protege.model.framestore.ClosureCachingBasicFrameStore
getTransactionStatusMonitor() - Method in interface edu.stanford.smi.protege.model.framestore.FrameStore
  Retrieves a transaction status monitor for transactions.
getTransactionStatusMonitor() - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreAdapter
getTransactionStatusMonitor() - Method in class edu.stanford.smi.protege.model.framestore.ImmutableNamesNarrowFrameStore
getTransactionStatusMonitor() - Method in class edu.stanford.smi.protege.model.framestore.InMemoryFrameDb
getTransactionStatusMonitor() - Method in class edu.stanford.smi.protege.model.framestore.MergingNarrowFrameStore
getTransactionStatusMonitor() - Method in class edu.stanford.smi.protege.model.framestore.ModificationFrameStore
getTransactionStatusMonitor() - Method in interface edu.stanford.smi.protege.model.framestore.NarrowFrameStore
  Retrieves a transaction status monitor for transactions.
getTransactionStatusMonitor() - Method in class edu.stanford.smi.protege.model.framestore.PlaceHolderNarrowFrameStore
getTransactionStatusMonitor() - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
getTransactionStatusMonitor() - Method in class edu.stanford.smi.protege.model.framestore.TemplateFrameStore
getTransactionStatusMonitor() - Method in class edu.stanford.smi.protege.model.framestore.undo.UndoFrameStore
getTransactionStatusMonitor() - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
getTransactionStatusMonitor() - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
getTransactionStatusMonitor(RemoteSession) - Method in interface edu.stanford.smi.protege.server.narrowframestore.RemoteServerNarrowFrameStore
getTransactionStatusMonitor(RemoteSession) - Method in class edu.stanford.smi.protege.server.narrowframestore.ServerNarrowFrameStore
getTransactionStatusMonitor() - Method in class edu.stanford.smi.protege.storage.database.AbstractDatabaseFrameDb
getTransactionStatusMonitor() - Method in interface edu.stanford.smi.protege.storage.database.DatabaseFrameDb
getTransactionStatusMonitor() - Method in class edu.stanford.smi.protege.storage.database.IdleConnectionNarrowFrameStore
getTransactionStatusMonitor() - Method in class edu.stanford.smi.protege.storage.database.ValueCachingNarrowFrameStore
getTransationIsolationLevel() - Method in class edu.stanford.smi.protege.util.transaction.TransactionMonitor
getTransferData(DataFlavor) - Method in class edu.stanford.smi.protege.util.TransferableCollection
getTransferDataFlavors() - Method in class edu.stanford.smi.protege.util.TransferableCollection
getTree() - Method in class edu.stanford.smi.protege.ui.RelationshipPane
getTree() - Method in class edu.stanford.smi.protege.widget.AbstractTreeWidget
getTreeCellRendererComponent(JTree, Object, boolean, boolean, boolean, int, boolean) - Method in class edu.stanford.smi.protege.util.DefaultRenderer
getTreePath(JTree, Collection) - Static method in class edu.stanford.smi.protege.util.ComponentUtilities
getType(Collection) - Static method in class edu.stanford.smi.protege.model.ValueTypeConstraint
getType() - Method in class edu.stanford.smi.protege.util.ProjectViewEvent
getTypeAsInt() - Method in enum edu.stanford.smi.protege.event.ServerProjectEvent.ServerEventTypes
getTypeComboBox() - Method in class edu.stanford.smi.protege.widget.ValueTypeWidget
getTypes(Instance) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getTypes(Instance) - Method in class edu.stanford.smi.protege.model.framestore.ArgumentCheckingFrameStore
getTypes(Instance) - Method in interface edu.stanford.smi.protege.model.framestore.FrameStore
getTypes(Instance) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreAdapter
getTypes(Instance) - Method in class edu.stanford.smi.protege.model.framestore.ModificationFrameStore
getTypes(Instance) - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
getTypes(Instance) - Method in class edu.stanford.smi.protege.model.framestore.TemplateFrameStore
getTypes(Instance) - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
getTypes() - Method in class edu.stanford.smi.protege.util.FrameWithBrowserText
getTypeText(Instance) - Method in class edu.stanford.smi.protege.ui.InstanceDisplay
getUglyIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getUndoCommand() - Method in interface edu.stanford.smi.protege.model.CommandManager
getUndoCommand() - Method in class edu.stanford.smi.protege.model.framestore.undo.UndoFrameStore
getUndoFrameStore() - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreManager
getUndoIcon(boolean, boolean) - Static method in class edu.stanford.smi.protege.resource.Icons
getUndoIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getUndoneCommands() - Method in interface edu.stanford.smi.protege.model.CommandManager
getUndoneCommands() - Method in class edu.stanford.smi.protege.model.framestore.undo.UndoFrameStore
getUnmodifiableList() - Method in class edu.stanford.smi.protege.util.HashList
  Deprecated.
getUnreachableSimpleInstances(Collection) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getUnreachableSimpleInstances(Collection) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getUpdate() - Method in class edu.stanford.smi.protege.server.update.ValueUpdate
getUpdateModificationSlots() - Method in class edu.stanford.smi.protege.model.Project
getUpIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getUpperCaseJavaName() - Method in class edu.stanford.smi.protege.code.generator.wrapping.SlotAtClassCode
getUpperCaseJavaName() - Method in class edu.stanford.smi.protege.code.generator.wrapping.SlotCode
getURI(RemoteSession) - Method in interface edu.stanford.smi.protege.server.RemoteServerProject
getURI(RemoteSession) - Method in class edu.stanford.smi.protege.server.ServerProject
getURIs() - Method in class edu.stanford.smi.protege.util.URIList
getURL(PropertyList) - Static method in class edu.stanford.smi.protege.storage.database.DatabaseKnowledgeBaseFactory
getUrl() - Method in class edu.stanford.smi.protege.storage.database.pool.DatabaseParam
getUrlConnectReadTimeout() - Static method in class edu.stanford.smi.protege.util.ApplicationProperties
getUrlConnectTimeout() - Static method in class edu.stanford.smi.protege.util.ApplicationProperties
getURLs() - Method in class edu.stanford.smi.protege.util.DirectoryClassLoader
getUser(String) - Method in class edu.stanford.smi.protege.server.metaproject.impl.MetaProjectImpl
getUser(String) - Method in interface edu.stanford.smi.protege.server.metaproject.MetaProject
getUserByName(String) - Method in class edu.stanford.smi.protege.server.metaproject.impl.PolicyImpl
getUserByName(String) - Method in interface edu.stanford.smi.protege.server.metaproject.Policy
getUserDirectory() - Static method in class edu.stanford.smi.protege.util.SystemUtilities
getUserInfo() - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
getUserInfo() - Method in interface edu.stanford.smi.protege.server.framestore.RemoteServerFrameStore
getUserInfo() - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
GetUserInfoJob - Class in edu.stanford.smi.protege.server.job
GetUserInfoJob(RemoteServer, RemoteSession, String) - Constructor for class edu.stanford.smi.protege.server.job.GetUserInfoJob
getUserIpAddress() - Method in interface edu.stanford.smi.protege.server.RemoteSession
getUserIpAddress() - Method in class edu.stanford.smi.protege.server.Session
getUserName() - Method in interface edu.stanford.smi.protege.event.Event
getUserName() - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getUserName() - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getUserName() - Method in class edu.stanford.smi.protege.model.Project
getUsername() - Method in class edu.stanford.smi.protege.server.RegisterUserServerPanel
getUserName() - Method in interface edu.stanford.smi.protege.server.RemoteSession
getUserName() - Method in class edu.stanford.smi.protege.server.Session
getUsername(PropertyList) - Static method in class edu.stanford.smi.protege.storage.database.DatabaseKnowledgeBaseFactory
getUsername() - Method in class edu.stanford.smi.protege.storage.database.pool.DatabaseParam
getUserName() - Method in class edu.stanford.smi.protege.util.AbstractEvent
getUserName() - Static method in class edu.stanford.smi.protege.util.ApplicationProperties
getUserName() - Static method in class edu.stanford.smi.protege.util.SystemUtilities
getUserObject() - Method in class edu.stanford.smi.protege.util.LazyTreeNode
getUserObjectIndex(Object) - Method in class edu.stanford.smi.protege.util.LazyTreeNode
getUsers() - Method in class edu.stanford.smi.protege.server.metaproject.impl.MetaProjectImpl
getUsers() - Method in interface edu.stanford.smi.protege.server.metaproject.MetaProject
getUsersGuideURLString() - Static method in class edu.stanford.smi.protege.util.ApplicationProperties
getUserToolBar(String) - Method in class edu.stanford.smi.protege.ui.ProjectManager
getUserToolBar(String) - Method in class edu.stanford.smi.protege.widget.AbstractTabWidget
getValidJavaName(String) - Static method in class edu.stanford.smi.protege.code.generator.wrapping.ClsCode
getValidJavaName(String) - Static method in class edu.stanford.smi.protege.code.generator.wrapping.JavaCodeGenerator
getValue(String) - Method in class edu.stanford.smi.protege.action.RedoAction
getValue(String) - Method in class edu.stanford.smi.protege.action.UndoAction
getValue(Integer) - Static method in class edu.stanford.smi.protege.model.MaximumCardinalityConstraint
getValue(int) - Static method in class edu.stanford.smi.protege.model.MaximumCardinalityConstraint
getValue(boolean) - Static method in class edu.stanford.smi.protege.model.MaximumCardinalityConstraint
getValue(Integer) - Static method in class edu.stanford.smi.protege.model.MinimumCardinalityConstraint
getValue(int) - Static method in class edu.stanford.smi.protege.model.MinimumCardinalityConstraint
getValue(Frame, Slot, Facet, boolean) - Method in interface edu.stanford.smi.protege.model.Storage
getValue() - Method in class edu.stanford.smi.protege.storage.clips.Token
  An optional attribute value of the Token.
getValue(FrameID) - Static method in class edu.stanford.smi.protege.storage.database.DatabaseUtils
getValue() - Method in class edu.stanford.smi.protege.util.DefaultRenderer
getValue() - Method in class edu.stanford.smi.protege.util.IntegerField
getValue() - Method in class edu.stanford.smi.protege.util.transaction.cache.serialize.CacheRead
getValueAt(int, int) - Method in class edu.stanford.smi.protege.server.admin.UserInfoTableModel
getValueAt(int, int) - Method in class edu.stanford.smi.protege.util.RowTableModel
getValueAt(int, int) - Method in class edu.stanford.smi.protege.widget.PropertiesTableModel
getValueChecking() - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
  Deprecated. Use #getFacetCheckingEnabled
getValueChecking() - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getValueColumnIndex() - Static method in class edu.stanford.smi.protege.widget.PropertiesTableModel
getValueCount() - Method in class edu.stanford.smi.protege.model.framestore.Record
getValueCount(Frame, Slot, Facet, boolean) - Method in interface edu.stanford.smi.protege.model.Storage
getValues(Slot) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getValues() - Method in class edu.stanford.smi.protege.model.DefaultSlot
getValues(Frame, Slot, Facet, boolean) - Method in class edu.stanford.smi.protege.model.framestore.ClosureCachingBasicFrameStore
getValues(Frame, Slot, Facet, boolean) - Method in class edu.stanford.smi.protege.model.framestore.ImmutableNamesNarrowFrameStore
getValues(Frame, Slot, Facet, boolean) - Method in class edu.stanford.smi.protege.model.framestore.InMemoryFrameDb
getValues(Frame, Slot, Facet, boolean) - Method in class edu.stanford.smi.protege.model.framestore.MergingNarrowFrameStore
getValues(Frame, Slot, Facet, boolean) - Method in interface edu.stanford.smi.protege.model.framestore.NarrowFrameStore
  Obtains the values of a slot/facet to a frame.
getValues(Frame, Slot, Facet, boolean) - Method in class edu.stanford.smi.protege.model.framestore.PlaceHolderNarrowFrameStore
getValues() - Method in class edu.stanford.smi.protege.model.framestore.Record
getValues(Slot) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getValues(boolean) - Static method in class edu.stanford.smi.protege.model.MaximumCardinalityConstraint
getValues() - Static method in class edu.stanford.smi.protege.model.RoleConstraint
getValues() - Method in interface edu.stanford.smi.protege.model.Slot
  Returns the "template slot values" for a top level slot.
getValues(Frame, Slot, Facet, boolean) - Method in interface edu.stanford.smi.protege.model.Storage
getValues() - Static method in class edu.stanford.smi.protege.model.ValueType
getValues() - Static method in class edu.stanford.smi.protege.model.ValueTypeConstraint
getValues(ValueType) - Static method in class edu.stanford.smi.protege.model.ValueTypeConstraint
getValues(ValueType, Collection) - Static method in class edu.stanford.smi.protege.model.ValueTypeConstraint
getValues(Frame, Slot, Facet, boolean, RemoteSession) - Method in interface edu.stanford.smi.protege.server.narrowframestore.RemoteServerNarrowFrameStore
getValues(Frame, Slot, Facet, boolean, RemoteSession) - Method in class edu.stanford.smi.protege.server.narrowframestore.ServerNarrowFrameStore
getValues(Frame, Slot, Facet, boolean) - Method in class edu.stanford.smi.protege.storage.database.DefaultDatabaseFrameDb
getValues(Frame, Slot, Facet, boolean) - Method in class edu.stanford.smi.protege.storage.database.IdleConnectionNarrowFrameStore
getValues(Frame, Slot, Facet, boolean) - Method in class edu.stanford.smi.protege.storage.database.ValueCachingNarrowFrameStore
getValues(X) - Method in class edu.stanford.smi.protege.util.ArrayListMultiMap
getValues() - Method in class edu.stanford.smi.protege.util.ConcurrentListModel
getValues() - Method in class edu.stanford.smi.protege.util.GetOwnSlotValuesBrowserTextJob
getValues(X) - Method in class edu.stanford.smi.protege.util.MultiMap
getValues(X) - Method in class edu.stanford.smi.protege.util.SetMultiMap
getValues() - Method in class edu.stanford.smi.protege.util.SimpleListModel
getValues() - Method in class edu.stanford.smi.protege.widget.AbstractListWidget
getValues() - Method in class edu.stanford.smi.protege.widget.AbstractSlotWidget
getValues() - Method in class edu.stanford.smi.protege.widget.CheckBoxWidget
getValues() - Method in class edu.stanford.smi.protege.widget.ClsFieldWidget
getValues() - Method in class edu.stanford.smi.protege.widget.ComboBoxWidget
getValues() - Method in class edu.stanford.smi.protege.widget.FloatFieldWidget
getValues() - Method in class edu.stanford.smi.protege.widget.InstanceFieldWidget
getValues() - Method in class edu.stanford.smi.protege.widget.InstanceValuesComponent
getValues() - Method in class edu.stanford.smi.protege.widget.IntegerFieldWidget
getValues() - Method in class edu.stanford.smi.protege.widget.InverseSlotWidget
getValues() - Method in class edu.stanford.smi.protege.widget.MaximumCardinalityWidget
getValues() - Method in class edu.stanford.smi.protege.widget.MinimumCardinalityWidget
getValues() - Method in class edu.stanford.smi.protege.widget.TextComponentWidget
getValues() - Method in interface edu.stanford.smi.protege.widget.ValuesComponent
getValues() - Method in class edu.stanford.smi.protege.widget.ValueTypeWidget
getValues() - Method in class edu.stanford.smi.protege.widget.YellowStickyWidget
getValuesCount(Frame, Slot, Facet, boolean) - Method in class edu.stanford.smi.protege.model.framestore.ClosureCachingBasicFrameStore
getValuesCount(Frame, Slot, Facet, boolean) - Method in class edu.stanford.smi.protege.model.framestore.ImmutableNamesNarrowFrameStore
getValuesCount(Frame, Slot, Facet, boolean) - Method in class edu.stanford.smi.protege.model.framestore.InMemoryFrameDb
getValuesCount(Frame, Slot, Facet, boolean) - Method in class edu.stanford.smi.protege.model.framestore.MergingNarrowFrameStore
getValuesCount(Frame, Slot, Facet, boolean) - Method in interface edu.stanford.smi.protege.model.framestore.NarrowFrameStore
getValuesCount(Frame, Slot, Facet, boolean) - Method in class edu.stanford.smi.protege.model.framestore.PlaceHolderNarrowFrameStore
getValuesCount(Frame, Slot, Facet, boolean, RemoteSession) - Method in interface edu.stanford.smi.protege.server.narrowframestore.RemoteServerNarrowFrameStore
getValuesCount(Frame, Slot, Facet, boolean, RemoteSession) - Method in class edu.stanford.smi.protege.server.narrowframestore.ServerNarrowFrameStore
getValuesCount(Frame, Slot, Facet, boolean) - Method in class edu.stanford.smi.protege.storage.database.DefaultDatabaseFrameDb
getValuesCount(Frame, Slot, Facet, boolean) - Method in class edu.stanford.smi.protege.storage.database.IdleConnectionNarrowFrameStore
getValuesCount(Frame, Slot, Facet, boolean) - Method in class edu.stanford.smi.protege.storage.database.ValueCachingNarrowFrameStore
getValuesFacet() - Method in class edu.stanford.smi.protege.model.SystemFrames
getValuesSlot() - Method in class edu.stanford.smi.protege.model.SystemFrames
getValueType() - Method in class edu.stanford.smi.protege.model.DefaultFacet
getValueType(Slot) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getValueType() - Method in class edu.stanford.smi.protege.model.DefaultSlot
getValueType() - Method in interface edu.stanford.smi.protege.model.Facet
getValueType(Slot) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getValueType() - Method in interface edu.stanford.smi.protege.model.Slot
getValueTypeFacet() - Method in class edu.stanford.smi.protege.model.SystemFrames
getValueTypeSlot() - Method in class edu.stanford.smi.protege.model.SystemFrames
getValueUpdates() - Method in class edu.stanford.smi.protege.server.update.OntologyUpdate
getVar() - Method in class edu.stanford.smi.protege.util.transaction.cache.serialize.CacheModify
getVar() - Method in class edu.stanford.smi.protege.util.transaction.cache.serialize.CacheRead
getVersion() - Static method in class edu.stanford.smi.protege.resource.Text
getVersionString() - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
getVersionString() - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
getVerticalStretcher() - Method in class edu.stanford.smi.protege.widget.FormWidget
getViewAction() - Method in class edu.stanford.smi.protege.ui.SubslotPane
getViewAction() - Method in class edu.stanford.smi.protege.widget.ProtegePropertiesComponent
getViewClsAction() - Method in class edu.stanford.smi.protege.ui.ClsesPanel
getViewClsAction() - Method in class edu.stanford.smi.protege.widget.ClsFieldWidget
getViewClsIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getViewClsReferencersIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getViewedCls() - Method in class edu.stanford.smi.protege.ui.ClsInverseRelationshipPanel
getViewFormIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getViewIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getViewInstanceAction() - Method in class edu.stanford.smi.protege.widget.ClsListWidget
getViewInstanceAction() - Method in class edu.stanford.smi.protege.widget.InstanceFieldWidget
getViewInstanceAction() - Method in class edu.stanford.smi.protege.widget.InstanceListWidget
getViewInstanceIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getViewInstanceReferencersIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getViewQueryIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getViewSlotAtClassIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getViewSlotIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
getVisibleDirectSubclassCount() - Method in interface edu.stanford.smi.protege.model.Cls
getVisibleDirectSubclassCount() - Method in class edu.stanford.smi.protege.model.DefaultCls
getVisibleDirectSubclasses() - Method in interface edu.stanford.smi.protege.model.Cls
getVisibleDirectSubclasses() - Method in class edu.stanford.smi.protege.model.DefaultCls
getVisiblePathToRoot(Frame, Collection) - Method in class edu.stanford.smi.protege.ui.FrameTreeFinder
getVisiblePathToRoot(Frame, Collection, Collection) - Method in class edu.stanford.smi.protege.ui.FrameTreeFinder
getVisiblePathToRoot(X, Collection<X>) - Method in class edu.stanford.smi.protege.util.TreeSelectionHelper
getVisibleTemplateSlots() - Method in interface edu.stanford.smi.protege.model.Cls
getVisibleTemplateSlots() - Method in class edu.stanford.smi.protege.model.DefaultCls
getWarningCount() - Method in class edu.stanford.smi.protege.util.DefaultLogger
getWelcomeDialog() - Static method in class edu.stanford.smi.protege.Application
getWelcomeDialogShow() - Static method in class edu.stanford.smi.protege.util.ApplicationProperties
getWidget() - Method in class edu.stanford.smi.protege.event.WidgetEvent
getWidget(Cls, Instance, Cls) - Method in class edu.stanford.smi.protege.ui.InstanceDisplay
  return null to prevent form from being displayed.
getWidget() - Method in class edu.stanford.smi.protege.util.ProjectViewEvent
getWidgetClassName() - Method in class edu.stanford.smi.protege.model.WidgetDescriptor
getWidgetDescriptor(String) - Method in class edu.stanford.smi.protege.util.PropertyList
getWidgetDescriptor(Slot) - Method in class edu.stanford.smi.protege.widget.FormWidget
getWidgetMapper() - Method in class edu.stanford.smi.protege.model.Project
getWizard() - Method in class edu.stanford.smi.protege.util.WizardPage
getWrappedInstance() - Method in class edu.stanford.smi.protege.util.PropertyList
getWrappedInstances(MetaProjectImpl.ClsEnum) - Method in class edu.stanford.smi.protege.server.metaproject.impl.MetaProjectImpl
getWrappedProtegeInstance() - Method in class edu.stanford.smi.protege.code.generator.wrapping.AbstractWrappedInstance
getWriteEncoding() - Static method in class edu.stanford.smi.protege.util.FileUtilities
getWriter(String) - Static method in class edu.stanford.smi.protege.util.FileUtilities
getYesIcon() - Static method in class edu.stanford.smi.protege.resource.Icons
GREATER_THAN - Static variable in interface edu.stanford.smi.protege.model.query.Query
GREATER_THAN_OR_EQUAL_TO - Static variable in interface edu.stanford.smi.protege.model.query.Query
Group - Interface in edu.stanford.smi.protege.server.metaproject
GroupImpl - Class in edu.stanford.smi.protege.server.metaproject.impl
GroupImpl(MetaProjectImpl, Instance) - Constructor for class edu.stanford.smi.protege.server.metaproject.impl.GroupImpl
GroupOperation - Interface in edu.stanford.smi.protege.server.metaproject
GroupOperationImpl - Class in edu.stanford.smi.protege.server.metaproject.impl
GroupOperationImpl(MetaProjectImpl, Instance) - Constructor for class edu.stanford.smi.protege.server.metaproject.impl.GroupOperationImpl

## H

handleAddAction() - Method in class edu.stanford.smi.protege.widget.ClsFieldWidget
handleAddAction() - Method in class edu.stanford.smi.protege.widget.ClsListWidget
handleAddAction() - Method in class edu.stanford.smi.protege.widget.DirectDomainWidget
handleAddAction() - Method in class edu.stanford.smi.protege.widget.InstanceFieldWidget
handleAddAction() - Method in class edu.stanford.smi.protege.widget.InstanceListWidget
handleBrowserTextChanged() - Method in class edu.stanford.smi.protege.widget.AbstractClsWidget
handleClose() - Method in class edu.stanford.smi.protege.model.framestore.AbstractFrameStoreInvocationHandler
handleClose() - Method in class edu.stanford.smi.protege.model.framestore.CallCachingFrameStore
handleClose() - Method in class edu.stanford.smi.protege.model.framestore.JournalingFrameStoreHandler
handleCreateAction() - Method in class edu.stanford.smi.protege.widget.BooleanListWidget
handleCreateAction() - Method in class edu.stanford.smi.protege.widget.InstanceFieldWidget
handleCreateAction() - Method in class edu.stanford.smi.protege.widget.InstanceListWidget
handleCreateAction() - Method in class edu.stanford.smi.protege.widget.IntegerListWidget
handleCreateAction() - Method in class edu.stanford.smi.protege.widget.StringListWidget
handleCreateAction() - Method in class edu.stanford.smi.protege.widget.SymbolListWidget
handleDelete(Frame) - Method in class edu.stanford.smi.protege.model.framestore.DeletionHookFrameStore
handleDelete(Collection) - Method in class edu.stanford.smi.protege.ui.SubslotPane
handleDoubleClick() - Method in class edu.stanford.smi.protege.widget.AbstractSlotWidget
handleError(OntologyException) - Method in interface edu.stanford.smi.protege.model.query.QueryCallback
handleError(ProtegeIOException) - Method in interface edu.stanford.smi.protege.model.query.QueryCallback
handleError(ProtegeError) - Method in interface edu.stanford.smi.protege.model.query.QueryCallback
handleError(OntologyException) - Method in class edu.stanford.smi.protege.model.query.QueryCallbackClone
handleError(ProtegeIOException) - Method in class edu.stanford.smi.protege.model.query.QueryCallbackClone
handleError(ProtegeError) - Method in class edu.stanford.smi.protege.model.query.QueryCallbackClone
handleError(OntologyException) - Method in class edu.stanford.smi.protege.model.query.SynchronizeQueryCallback
handleError(ProtegeIOException) - Method in class edu.stanford.smi.protege.model.query.SynchronizeQueryCallback
handleError(ProtegeError) - Method in class edu.stanford.smi.protege.model.query.SynchronizeQueryCallback
handleErrors(Collection) - Method in class edu.stanford.smi.protege.plugin.AbstractCreateProjectPlugin
handleErrors(Collection) - Method in class edu.stanford.smi.protege.plugin.AbstractExportPlugin
handleErrors(Logger, Level, Collection) - Static method in class edu.stanford.smi.protege.util.Log
handleExportRequest(Project) - Method in interface edu.stanford.smi.protege.plugin.ExportPlugin
  Save the domain information out to "somewhere else".
handleExportRequest(Project) - Method in class edu.stanford.smi.protege.storage.clips.ClipsImportExportPlugin
handleFrameNameChanged() - Method in class edu.stanford.smi.protege.widget.AbstractClsWidget
handleImportRequest() - Method in interface edu.stanford.smi.protege.plugin.ImportPlugin
  Create a new project from information given "somewhere else".
handleImportRequest() - Method in class edu.stanford.smi.protege.storage.clips.ClipsImportExportPlugin
handleInvoke(Method, Object[]) - Method in class edu.stanford.smi.protege.model.framestore.AbstractFrameStoreInvocationHandler
handleInvoke(Method, Object[]) - Method in class edu.stanford.smi.protege.model.framestore.CallCachingFrameStore
handleInvoke(Method, Object[]) - Method in class edu.stanford.smi.protege.model.framestore.JournalingFrameStoreHandler
handleInvoke(Method, Object[]) - Method in class edu.stanford.smi.protege.model.framestore.ReadOnlyFrameStoreHandler
handleInvoke(Method, Object[]) - Method in class edu.stanford.smi.protege.model.framestore.TraceFrameStoreHandler
handleInvoke(Method, Object[]) - Method in class edu.stanford.smi.protege.server.framestore.LastUsageInvocationHandler
handleInvoke(Method, Object[]) - Method in class edu.stanford.smi.protege.server.framestore.LocalizeFrameStoreHandler
handleInvoke(Method, Object[]) - Method in class edu.stanford.smi.protege.server.framestore.ReadAccessEnforcementFrameStore
handleMoveDownAction() - Method in class edu.stanford.smi.protege.widget.TemplateSlotsWidget
handleMoveUpAction() - Method in class edu.stanford.smi.protege.widget.TemplateSlotsWidget
handleOwnSlotValueChanged(Slot) - Method in class edu.stanford.smi.protege.widget.AbstractClsWidget
handleReinitialize() - Method in class edu.stanford.smi.protege.model.framestore.AbstractFrameStoreInvocationHandler
handleReinitialize() - Method in class edu.stanford.smi.protege.model.framestore.CallCachingFrameStore
handleRemoveAction(Collection) - Method in class edu.stanford.smi.protege.widget.BooleanListWidget
handleRemoveAction() - Method in class edu.stanford.smi.protege.widget.ClsFieldWidget
handleRemoveAction(Collection) - Method in class edu.stanford.smi.protege.widget.ClsListWidget
handleRemoveAction() - Method in class edu.stanford.smi.protege.widget.InstanceFieldWidget
handleRemoveAction(Collection) - Method in class edu.stanford.smi.protege.widget.InstanceListWidget
handleRemoveAction(Collection) - Method in class edu.stanford.smi.protege.widget.IntegerListWidget
handleRemoveAction(Collection) - Method in class edu.stanford.smi.protege.widget.StringListWidget
handleRemoveAction(Collection) - Method in class edu.stanford.smi.protege.widget.SymbolListWidget
handleRemoveCombinations(Collection) - Method in class edu.stanford.smi.protege.widget.TemplateSlotsWidget
handleViewAction(Boolean) - Method in class edu.stanford.smi.protege.widget.BooleanListWidget
handleViewAction(Instance) - Method in class edu.stanford.smi.protege.widget.ClsFieldWidget
handleViewAction(Cls) - Method in class edu.stanford.smi.protege.widget.ClsListWidget
handleViewAction(Instance) - Method in class edu.stanford.smi.protege.widget.InstanceFieldWidget
handleViewAction(Instance) - Method in class edu.stanford.smi.protege.widget.InstanceListWidget
handleViewAction(Integer) - Method in class edu.stanford.smi.protege.widget.IntegerListWidget
handleViewAction(String) - Method in class edu.stanford.smi.protege.widget.StringListWidget
handleViewAction(String) - Method in class edu.stanford.smi.protege.widget.SymbolListWidget
hasButton(Icon) - Method in class edu.stanford.smi.protege.widget.AbstractTableWidget
hasChanged() - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
hasChanged() - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreManager
hasChanged() - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
hasCompleteSources() - Method in class edu.stanford.smi.protege.model.Project
hasCustomizedDescriptor(Cls) - Method in class edu.stanford.smi.protege.model.Project
hasDirectlyOverriddenTemplateFacet(Slot, Facet) - Method in interface edu.stanford.smi.protege.model.Cls
  returns true if the facet is overridden on this slot relative to the value at this classes direct parent.
hasDirectlyOverriddenTemplateFacet(Slot, Facet) - Method in class edu.stanford.smi.protege.model.DefaultCls
hasDirectlyOverriddenTemplateFacet(Cls, Slot, Facet) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
hasDirectlyOverriddenTemplateFacet(Cls, Slot, Facet) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
hasDirectlyOverriddenTemplateSlot(Slot) - Method in interface edu.stanford.smi.protege.model.Cls
  returns true if any facet of this slot at this class is directly overridden.
hasDirectlyOverriddenTemplateSlot(Slot) - Method in class edu.stanford.smi.protege.model.DefaultCls
hasDirectlyOverriddenTemplateSlot(Cls, Slot) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
hasDirectlyOverriddenTemplateSlot(Cls, Slot) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
hasDirectSuperclass(Cls) - Method in interface edu.stanford.smi.protege.model.Cls
hasDirectSuperclass(Cls) - Method in class edu.stanford.smi.protege.model.DefaultCls
hasDirectSuperclass(Cls, Cls) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
hasDirectSuperclass(Cls, Cls) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
hasDirectSuperslot(Slot, Slot) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
hasDirectSuperslot(Slot) - Method in class edu.stanford.smi.protege.model.DefaultSlot
hasDirectSuperslot(Slot, Slot) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
hasDirectSuperslot(Slot) - Method in interface edu.stanford.smi.protege.model.Slot
hasDirectTemplateSlot(Slot) - Method in interface edu.stanford.smi.protege.model.Cls
hasDirectTemplateSlot(Slot) - Method in class edu.stanford.smi.protege.model.DefaultCls
hasDirectTemplateSlot(Cls, Slot) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
hasDirectTemplateSlot(Cls, Slot) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
hasDirectType(Cls) - Method in class edu.stanford.smi.protege.model.DefaultInstance
hasDirectType(Instance, Cls) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
hasDirectType(Cls) - Method in interface edu.stanford.smi.protege.model.Instance
hasDirectType(Instance, Cls) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
hasError() - Method in class edu.stanford.smi.protege.util.DefaultErrorHandler
hashCode() - Method in class edu.stanford.smi.protege.code.generator.wrapping.AbstractWrappedInstance
hashCode() - Method in class edu.stanford.smi.protege.model.BrowserSlotPattern
hashCode() - Method in class edu.stanford.smi.protege.model.DefaultFrame
hashCode() - Method in class edu.stanford.smi.protege.model.FrameID
hashCode() - Method in class edu.stanford.smi.protege.model.FrameSlotCombination
hashCode() - Method in class edu.stanford.smi.protege.model.framestore.Record
hashCode() - Method in class edu.stanford.smi.protege.model.framestore.ReferenceImpl
hashCode() - Method in class edu.stanford.smi.protege.model.framestore.Sft
hashCode() - Method in class edu.stanford.smi.protege.model.WidgetDescriptor
hashCode() - Method in class edu.stanford.smi.protege.resource.ResourceKey
hashCode() - Method in class edu.stanford.smi.protege.server.framestore.background.ClientAndFrame
hashCode() - Method in class edu.stanford.smi.protege.server.metaproject.impl.OperationImpl
hashCode() - Method in class edu.stanford.smi.protege.server.metaproject.impl.PolicyControlledObjectImpl
hashCode() - Method in class edu.stanford.smi.protege.server.metaproject.impl.PropertyValueImpl
hashCode() - Method in class edu.stanford.smi.protege.server.metaproject.impl.UnbackedOperationImpl
hashCode() - Method in class edu.stanford.smi.protege.server.metaproject.impl.UserImpl
hashCode() - Method in class edu.stanford.smi.protege.server.metaproject.impl.WrappedProtegeInstanceImpl
hashCode() - Method in class edu.stanford.smi.protege.server.Session
hashCode() - Method in class edu.stanford.smi.protege.server.socket.RmiSocketFactory
hashCode() - Method in class edu.stanford.smi.protege.storage.database.pool.DatabaseParam
hashCode() - Method in class edu.stanford.smi.protege.util.AbstractEvent
hashCode() - Method in class edu.stanford.smi.protege.util.FrameWithBrowserText
hashCode() - Method in class edu.stanford.smi.protege.util.transaction.cache.CacheResult
hasHeaderButton(Icon) - Method in class edu.stanford.smi.protege.util.LabeledComponent
HashList - Class in edu.stanford.smi.protege.util
  Deprecated. Use ArrayList instead.
HashList() - Constructor for class edu.stanford.smi.protege.util.HashList
  Deprecated. Constructs an empty list.
HashList(Collection) - Constructor for class edu.stanford.smi.protege.util.HashList
  Deprecated. Constructs a list containing the elements of the specified collection, in the order they are returned by the collection's iterator.
HashUtils - Class in edu.stanford.smi.protege.util
HashUtils() - Constructor for class edu.stanford.smi.protege.util.HashUtils
hasIncludedProjects() - Method in class edu.stanford.smi.protege.model.Project
hasInheritedTemplateSlot(Slot) - Method in interface edu.stanford.smi.protege.model.Cls
hasInheritedTemplateSlot(Slot) - Method in class edu.stanford.smi.protege.model.DefaultCls
hasInheritedTemplateSlot(Cls, Slot) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
hasInheritedTemplateSlot(Cls, Slot) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
hasListeners(Object) - Method in class edu.stanford.smi.protege.util.ListenerCollection
hasListeners(Object) - Method in class edu.stanford.smi.protege.util.ListenerList
hasListeners(Object) - Method in class edu.stanford.smi.protege.util.ListenerMap
hasMultipleConcreteClses(KnowledgeBase, Collection) - Static method in class edu.stanford.smi.protege.ui.DisplayUtilities
hasMultipleSuperclasses(Cls) - Method in class edu.stanford.smi.protege.code.generator.wrapping.JavaCodeGenerator
hasOverriddenTemplateFacet(Slot, Facet) - Method in interface edu.stanford.smi.protege.model.Cls
  returns true if the facet is overridden on this slot relative to the value of the facets associated slot on the top-level slot.
hasOverriddenTemplateFacet(Slot, Facet) - Method in class edu.stanford.smi.protege.model.DefaultCls
hasOverriddenTemplateFacet(Cls, Slot, Facet) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
hasOverriddenTemplateFacet(Cls, Slot, Facet) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
hasOverriddenTemplateSlot(Slot) - Method in interface edu.stanford.smi.protege.model.Cls
  returns true if any facet of this slot at this class is overridden.
hasOverriddenTemplateSlot(Slot) - Method in class edu.stanford.smi.protege.model.DefaultCls
hasOverriddenTemplateSlot(Cls, Slot) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
hasOverriddenTemplateSlot(Cls, Slot) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
hasOwnSlot(Slot) - Method in class edu.stanford.smi.protege.model.DefaultFrame
hasOwnSlot(Frame, Slot) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
hasOwnSlot(Slot) - Method in interface edu.stanford.smi.protege.model.Frame
hasOwnSlot(Frame, Slot) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
hasSlotValueAtSomeFrame(Slot) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
  TODO implement or deprecate hasSlotValueAtSomeFrame
hasSlotValueAtSomeFrame(Slot) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
hasSlotValues(Slot) - Method in class edu.stanford.smi.protege.code.generator.wrapping.AbstractWrappedInstance
hasSuperclass(Cls) - Method in interface edu.stanford.smi.protege.model.Cls
hasSuperclass(Cls) - Method in class edu.stanford.smi.protege.model.DefaultCls
hasSuperclass(Cls, Cls) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
hasSuperclass(Cls, Cls) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
hasSuperslot(Slot, Slot) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
hasSuperslot(Slot) - Method in class edu.stanford.smi.protege.model.DefaultSlot
hasSuperslot(Slot, Slot) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
hasSuperslot(Slot) - Method in interface edu.stanford.smi.protege.model.Slot
hasTemplateFacet(Slot, Facet) - Method in interface edu.stanford.smi.protege.model.Cls
hasTemplateFacet(Slot, Facet) - Method in class edu.stanford.smi.protege.model.DefaultCls
hasTemplateSlot(Slot) - Method in interface edu.stanford.smi.protege.model.Cls
hasTemplateSlot(Slot) - Method in class edu.stanford.smi.protege.model.DefaultCls
hasTemplateSlot(Cls, Slot) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
hasTemplateSlot(Cls, Slot) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
hasText(ResourceKey) - Method in class edu.stanford.smi.protege.resource.BundleHelper
hasText(ResourceKey) - Static method in class edu.stanford.smi.protege.resource.LocalizedText
hasType(Cls) - Method in class edu.stanford.smi.protege.model.DefaultInstance
hasType(Instance, Cls) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
hasType(Cls) - Method in interface edu.stanford.smi.protege.model.Instance
hasType(Instance, Cls) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
hasValidCredentials(String, String) - Method in interface edu.stanford.smi.protege.server.RemoteServer
hasValidCredentials(String, String) - Method in class edu.stanford.smi.protege.server.Server
hasValidValue(URIField) - Method in class edu.stanford.smi.protege.model.KnowledgeBaseSourcesEditor
hasValue(Frame, Slot, Facet, boolean, Object) - Method in interface edu.stanford.smi.protege.model.Storage
hasValueAtSomeFrame() - Method in class edu.stanford.smi.protege.model.DefaultSlot
hasValueAtSomeFrame() - Method in interface edu.stanford.smi.protege.model.Slot
hasValueAtSomeFrame(Slot, Facet, boolean) - Method in interface edu.stanford.smi.protege.model.Storage
hasWidgetDescriptor(Slot) - Method in class edu.stanford.smi.protege.widget.FormWidget
hasWidgetDescriptors() - Method in class edu.stanford.smi.protege.widget.FormWidget
HeaderComponent - Class in edu.stanford.smi.protege.ui
HeaderComponent(JComponent) - Constructor for class edu.stanford.smi.protege.ui.HeaderComponent
HeaderComponent(String, String, JComponent) - Constructor for class edu.stanford.smi.protege.ui.HeaderComponent
heartBeat(RemoteSession) - Method in interface edu.stanford.smi.protege.server.framestore.RemoteServerFrameStore
heartBeat(RemoteSession) - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
HEARTBEAT_CLIENT_DIED - Static variable in interface edu.stanford.smi.protege.server.framestore.RemoteServerFrameStore
HEARTBEAT_POLL_INTERVAL - Static variable in interface edu.stanford.smi.protege.server.framestore.RemoteServerFrameStore
heartbeatDisabled() - Static method in class edu.stanford.smi.protege.server.ServerProperties
HELP_MENU_ABOUT - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
HELP_MENU_ABOUT_PLUGINS - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
HELP_MENU_CITE_PROTEGE - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
HELP_MENU_FAQ - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
HELP_MENU_GETTING_STARTED - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
HELP_MENU_ICONS - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
HELP_MENU_ONTOLOGIES_101 - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
HELP_MENU_PLUGINS - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
HELP_MENU_USERS_GUIDE - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
hide(Component, int) - Static method in class edu.stanford.smi.protege.util.ComponentUtilities
hide() - Method in class edu.stanford.smi.protege.util.WaitCursor
highlightSlot(Slot, Color) - Method in class edu.stanford.smi.protege.widget.FormWidget
  Put a border around the give slot with the give color.
HORIZONTAL_FILL_DEFAULT - Static variable in class edu.stanford.smi.protege.util.ResizingLayout
HORIZONTAL_STRETCHER - Static variable in class edu.stanford.smi.protege.util.ResizingLayout
HybridCompressingInputStream - Class in edu.stanford.smi.protege.server.socket.deflate
  doesn't work - fix the two broken junits.
HybridCompressingInputStream(InputStream) - Constructor for class edu.stanford.smi.protege.server.socket.deflate.HybridCompressingInputStream
HybridCompressingOutputStream - Class in edu.stanford.smi.protege.server.socket.deflate
  doesn't work - fix the two broken junits.
HybridCompressingOutputStream(OutputStream) - Constructor for class edu.stanford.smi.protege.server.socket.deflate.HybridCompressingOutputStream

## I

IconDialog - Class in edu.stanford.smi.protege.ui
  Dialog that displays a list of Protege-2000 icons with descriptions.
IconDialog() - Constructor for class edu.stanford.smi.protege.ui.IconDialog
IconDialog(Frame, String, boolean) - Constructor for class edu.stanford.smi.protege.ui.IconDialog
Icons - Class in edu.stanford.smi.protege.resource
  Utility class for accessing icons stored in the Protege jar.
Icons() - Constructor for class edu.stanford.smi.protege.resource.Icons
IDGenerator - Class in edu.stanford.smi.protege.util
IDGenerator() - Constructor for class edu.stanford.smi.protege.util.IDGenerator
IdleConnectionNarrowFrameStore - Class in edu.stanford.smi.protege.storage.database
IdleConnectionNarrowFrameStore(ValueCachingNarrowFrameStore) - Constructor for class edu.stanford.smi.protege.storage.database.IdleConnectionNarrowFrameStore
image - Variable in class edu.stanford.smi.protege.storage.clips.Token
  The string image of the token.
ImageWidget - Class in edu.stanford.smi.protege.widget
ImageWidget() - Constructor for class edu.stanford.smi.protege.widget.ImageWidget
ImmutableNamesFrameStore - Class in edu.stanford.smi.protege.model.framestore
ImmutableNamesFrameStore(KnowledgeBase) - Constructor for class edu.stanford.smi.protege.model.framestore.ImmutableNamesFrameStore
ImmutableNamesNarrowFrameStore - Class in edu.stanford.smi.protege.model.framestore
ImmutableNamesNarrowFrameStore(KnowledgeBase, NarrowFrameStore) - Constructor for class edu.stanford.smi.protege.model.framestore.ImmutableNamesNarrowFrameStore
IMPORT_DIALOG_TITLE - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
ImportPlugin - Interface in edu.stanford.smi.protege.plugin
ImportPluginAction - Class in edu.stanford.smi.protege.action
  Action to build a project from component pieces (files)
ImportPluginAction(ImportPlugin) - Constructor for class edu.stanford.smi.protege.action.ImportPluginAction
importProjectRequest(ImportPlugin) - Method in class edu.stanford.smi.protege.ui.ProjectManager
inBuf - Variable in class edu.stanford.smi.protege.storage.clips.SimpleCharStream
INCLUDE - Static variable in interface edu.stanford.smi.protege.storage.clips.ParserConstants
  RegularExpression Id.
INCLUDE_PROJECT_FAILED_DIALOG_RECURSIVE_INCLUDE_TEXT - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
INCLUDE_PROJECT_FILED_DIALOG_ALREADY_INCLUDED_TEXT - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
INCLUDED_PROJECTS_DIALOG_TITLE - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
IncludedProjectsWizardPage - Class in edu.stanford.smi.protege.storage.clips
IncludedProjectsWizardPage(Wizard, ClipsFilesCreateProjectPlugin) - Constructor for class edu.stanford.smi.protege.storage.clips.IncludedProjectsWizardPage
includeKnowledgeBase(KnowledgeBase, PropertyList, Collection) - Method in class edu.stanford.smi.protege.model.AbstractKnowledgeBaseFactory
includeKnowledgeBase(KnowledgeBase, PropertyList, Collection) - Method in interface edu.stanford.smi.protege.model.KnowledgeBaseFactory
includeKnowledgeBase(KnowledgeBase, PropertyList, Collection) - Method in class edu.stanford.smi.protege.storage.database.DatabaseKnowledgeBaseFactory
includeKnowledgeBase(KnowledgeBase, String, String, String, String, String, Collection) - Method in class edu.stanford.smi.protege.storage.database.DatabaseKnowledgeBaseFactory
includeOntologies() - Method in class edu.stanford.smi.protege.storage.clips.Parser
IncludeProject - Class in edu.stanford.smi.protege.action
  Action to prompt the user for a new project to be included and then include it.
IncludeProject() - Constructor for class edu.stanford.smi.protege.action.IncludeProject
includeProject(String, Collection) - Method in class edu.stanford.smi.protege.model.Project
includeProject(URI, Collection) - Method in class edu.stanford.smi.protege.model.Project
includeProject(URI, boolean, Collection) - Method in class edu.stanford.smi.protege.model.Project
INCREASE_FONT_SIZE - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
IncreaseFontSize - Class in edu.stanford.smi.protege.action
  Action to increase the application font size by 1 unit.
IncreaseFontSize() - Constructor for class edu.stanford.smi.protege.action.IncreaseFontSize
indexOf(Object) - Method in class edu.stanford.smi.protege.util.ConcurrentListModel
indexOf(Object) - Method in class edu.stanford.smi.protege.util.HashList
  Deprecated. Returns the index in this list of the first occurrence of the specified element, or -1 if the List does not contain this element.
indexOf(Object) - Method in class edu.stanford.smi.protege.util.SimpleListModel
inFrameCalculatorThread() - Method in class edu.stanford.smi.protege.server.framestore.background.FrameCalculator
INHERIT - Static variable in interface edu.stanford.smi.protege.storage.clips.ParserConstants
  RegularExpression Id.
init() - Method in class edu.stanford.smi.protege.Applet
init() - Method in class edu.stanford.smi.protege.server.admin.AbstractRefreshableServerPanel
initGraphics() - Static method in class edu.stanford.smi.protege.util.SystemUtilities
initialize(Project) - Method in class edu.stanford.smi.protege.plugin.AbstractCreateProjectPlugin
initialize() - Static method in class edu.stanford.smi.protege.plugin.PluginUtilities
initialize(boolean) - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
initialize(Project) - Method in class edu.stanford.smi.protege.storage.clips.ClipsFilesCreateProjectPlugin
initialize(FrameFactory, String, String, String, String, String, boolean) - Method in class edu.stanford.smi.protege.storage.database.AbstractDatabaseFrameDb
initialize(FrameFactory, String, String, String, String, String, boolean) - Method in interface edu.stanford.smi.protege.storage.database.DatabaseFrameDb
initialize(Action, ResourceKey, boolean) - Static method in class edu.stanford.smi.protege.util.StandardAction
initialize() - Static method in class edu.stanford.smi.protege.util.SystemUtilities
initialize() - Method in class edu.stanford.smi.protege.util.Wizard
initialize() - Method in class edu.stanford.smi.protege.widget.AbstractListWidget
initialize(Action) - Method in class edu.stanford.smi.protege.widget.AbstractListWidget
initialize() - Method in class edu.stanford.smi.protege.widget.AbstractTableWidget
initialize(Action) - Method in class edu.stanford.smi.protege.widget.AbstractTableWidget
initialize() - Method in class edu.stanford.smi.protege.widget.AbstractTreeWidget
initialize() - Method in class edu.stanford.smi.protege.widget.BooleanListWidget
initialize() - Method in class edu.stanford.smi.protege.widget.CheckBoxWidget
initialize() - Method in class edu.stanford.smi.protege.widget.ClsesAndInstancesTab
initialize() - Method in class edu.stanford.smi.protege.widget.ClsesTab
initialize() - Method in class edu.stanford.smi.protege.widget.ClsFieldWidget
initialize() - Method in class edu.stanford.smi.protege.widget.ClsListWidget
initialize() - Method in class edu.stanford.smi.protege.widget.ComboBoxWidget
initialize() - Method in class edu.stanford.smi.protege.widget.DigestedPasswordWidget
initialize() - Method in class edu.stanford.smi.protege.widget.DirectDomainWidget
initialize() - Method in class edu.stanford.smi.protege.widget.FloatListWidget
initialize() - Method in class edu.stanford.smi.protege.widget.FormsTab
initialize() - Method in class edu.stanford.smi.protege.widget.FormWidget
initialize() - Method in class edu.stanford.smi.protege.widget.ImageWidget
initialize() - Method in class edu.stanford.smi.protege.widget.InstanceFieldWidget
initialize() - Method in class edu.stanford.smi.protege.widget.InstanceListWidget
initialize() - Method in class edu.stanford.smi.protege.widget.InstancesTab
initialize() - Method in class edu.stanford.smi.protege.widget.IntegerListWidget
initialize() - Method in class edu.stanford.smi.protege.widget.InverseSlotWidget
initialize() - Method in class edu.stanford.smi.protege.widget.KAToolTab
  initialize method comment.
initialize() - Method in class edu.stanford.smi.protege.widget.MaximumCardinalityWidget
initialize() - Method in class edu.stanford.smi.protege.widget.MinimumCardinalityWidget
initialize() - Method in class edu.stanford.smi.protege.widget.NumberFieldWidget
initialize() - Method in class edu.stanford.smi.protege.widget.ProtegePropertiesTab
initialize() - Method in class edu.stanford.smi.protege.widget.RoleWidget
initialize() - Method in class edu.stanford.smi.protege.widget.SlotsTab
initialize() - Method in class edu.stanford.smi.protege.widget.SlotValuesWidget
initialize() - Method in class edu.stanford.smi.protege.widget.StringListWidget
initialize() - Method in class edu.stanford.smi.protege.widget.SymbolListWidget
initialize() - Method in class edu.stanford.smi.protege.widget.TemplateSlotsWidget
initialize() - Method in class edu.stanford.smi.protege.widget.TextAreaWidget
initialize(boolean, int, int) - Method in class edu.stanford.smi.protege.widget.TextComponentWidget
initialize(boolean, boolean, int, int) - Method in class edu.stanford.smi.protege.widget.TextComponentWidget
initialize() - Method in class edu.stanford.smi.protege.widget.TextFieldWidget
initialize() - Method in class edu.stanford.smi.protege.widget.UglyClsWidget
initialize() - Method in class edu.stanford.smi.protege.widget.UglySlotWidget
initialize() - Method in class edu.stanford.smi.protege.widget.UglyTabWidget
initialize() - Method in class edu.stanford.smi.protege.widget.URLWidget
initialize() - Method in class edu.stanford.smi.protege.widget.ValueTypeWidget
initialize() - Method in interface edu.stanford.smi.protege.widget.Widget
initialize() - Method in class edu.stanford.smi.protege.widget.YellowStickyWidget
initializeKB(KnowledgeBase, String, String, String, String, String, boolean) - Method in class edu.stanford.smi.protege.storage.database.DatabaseKnowledgeBaseFactory
INITIALIZER_ONLY - Static variable in interface edu.stanford.smi.protege.storage.clips.ParserConstants
  RegularExpression Id.
initializeSources(Project, Collection) - Method in class edu.stanford.smi.protege.plugin.AbstractBackendExportPlugin
initializeSources(PropertyList) - Method in class edu.stanford.smi.protege.plugin.AbstractCreateProjectPlugin
initializeSources(PropertyList) - Method in class edu.stanford.smi.protege.storage.clips.ClipsFilesCreateProjectPlugin
initializeSources(Project, Collection) - Method in class edu.stanford.smi.protege.storage.clips.ClipsFilesExportProjectPlugin
initializeSources(PropertyList) - Method in class edu.stanford.smi.protege.storage.database.DatabaseCreateProjectPlugin
initializeUI() - Method in class edu.stanford.smi.protege.server.admin.ServerAdminPanel
initInverseRelationshipPanelListener(ClsInverseRelationshipPanel) - Method in class edu.stanford.smi.protege.widget.ClsesTab
InMemoryFrameDb - Class in edu.stanford.smi.protege.model.framestore
InMemoryFrameDb(String) - Constructor for class edu.stanford.smi.protege.model.framestore.InMemoryFrameDb
InMemoryFrameStore - Class in edu.stanford.smi.protege.model.framestore
InMemoryFrameStore(KnowledgeBase) - Constructor for class edu.stanford.smi.protege.model.framestore.InMemoryFrameStore
input_stream - Variable in class edu.stanford.smi.protege.storage.clips.ParserTokenManager
inputStream - Variable in class edu.stanford.smi.protege.storage.clips.SimpleCharStream
INSERT_UNICODE_ACTION - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
insertFrameStore(FrameStore) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
insertFrameStore(FrameStore, int) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
insertFrameStore(FrameStore, int) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreManager
insertFrameStore(FrameStore) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreManager
insertFrameStore(FrameStore, int) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
  Inserts a new frame store into the delegation chain.
insertFrameStore(FrameStore) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
  Inserts a new frame store into the front of the delegation chain.
InsertUnicodeCharacterAction - Class in edu.stanford.smi.protege.action
InsertUnicodeCharacterAction() - Constructor for class edu.stanford.smi.protege.action.InsertUnicodeCharacterAction
insertUpdate(DocumentEvent) - Method in class edu.stanford.smi.protege.util.DocumentChangedListener
Instance - Interface in edu.stanford.smi.protege.model
  An instance of a class.
INSTANCE - Static variable in class edu.stanford.smi.protege.model.ValueType
instance() - Method in class edu.stanford.smi.protege.storage.clips.Parser
INSTANCE - Static variable in interface edu.stanford.smi.protege.storage.clips.ParserConstants
  RegularExpression Id.
INSTANCE_ADD - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
INSTANCE_ANNOTATION - Static variable in interface edu.stanford.smi.protege.model.Model.Cls
INSTANCE_ANNOTATION - Static variable in interface edu.stanford.smi.protege.model.Model.ClsID
INSTANCE_BROWSER_TITLE - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
INSTANCE_COPY - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
INSTANCE_CREATE - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
INSTANCE_CREATED - Static variable in class edu.stanford.smi.protege.event.KnowledgeBaseEvent
INSTANCE_DELETE - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
INSTANCE_DELETED - Static variable in class edu.stanford.smi.protege.event.KnowledgeBaseEvent
INSTANCE_EDITOR_FOR_INSTANCE_LABEL - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
INSTANCE_EDITOR_TITLE - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
INSTANCE_MOVE_DOWN - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
INSTANCE_MOVE_UP - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
INSTANCE_NAME_LITERAL - Static variable in interface edu.stanford.smi.protege.storage.clips.ParserConstants
  RegularExpression Id.
INSTANCE_NOTE - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
INSTANCE_NOTE_CREATE - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
INSTANCE_NOTE_DELETE - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
INSTANCE_NOTE_HIDE - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
INSTANCE_REMOVE - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
INSTANCE_SEARCH_FOR - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
INSTANCE_VIEW - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
INSTANCE_VIEW_REFERENCES - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
InstanceAdapter - Class in edu.stanford.smi.protege.event
InstanceAdapter() - Constructor for class edu.stanford.smi.protege.event.InstanceAdapter
InstanceClsesPanel - Class in edu.stanford.smi.protege.widget
  The cls tree display on the instances panel.
InstanceClsesPanel(Project) - Constructor for class edu.stanford.smi.protege.widget.InstanceClsesPanel
instanceCreated(KnowledgeBaseEvent) - Method in class edu.stanford.smi.protege.event.KnowledgeBaseAdapter
instanceCreated(KnowledgeBaseEvent) - Method in interface edu.stanford.smi.protege.event.KnowledgeBaseListener
instanceDeleted(KnowledgeBaseEvent) - Method in class edu.stanford.smi.protege.event.KnowledgeBaseAdapter
instanceDeleted(KnowledgeBaseEvent) - Method in interface edu.stanford.smi.protege.event.KnowledgeBaseListener
InstanceDisplay - Class in edu.stanford.smi.protege.ui
  A holder for the display of a runtime "ClsForm".
InstanceDisplay(Project) - Constructor for class edu.stanford.smi.protege.ui.InstanceDisplay
InstanceDisplay(Project, boolean, boolean) - Constructor for class edu.stanford.smi.protege.ui.InstanceDisplay
InstanceEvent - Class in edu.stanford.smi.protege.event
  Event generated when an instance changes.
InstanceEvent(Instance, int, Object) - Constructor for class edu.stanford.smi.protege.event.InstanceEvent
InstanceEventDispatcher - Class in edu.stanford.smi.protege.event
  Dispatcher to send instance events to their listeners.
InstanceEventDispatcher() - Constructor for class edu.stanford.smi.protege.event.InstanceEventDispatcher
InstanceField - Class in edu.stanford.smi.protege.ui
  Component for acquiring and displaying a single instance of a class
InstanceField(String, Collection) - Constructor for class edu.stanford.smi.protege.ui.InstanceField
InstanceFieldWidget - Class in edu.stanford.smi.protege.widget
  The default cardinality single widget for acquiring and displaying an instance.
InstanceFieldWidget() - Constructor for class edu.stanford.smi.protege.widget.InstanceFieldWidget
InstanceListener - Interface in edu.stanford.smi.protege.event
  Listener interface for instance events.
InstanceListWidget - Class in edu.stanford.smi.protege.widget
  Standard widget for acquiring and displaying instances in an ordered list.
InstanceListWidget() - Constructor for class edu.stanford.smi.protege.widget.InstanceListWidget
instanceName() - Method in class edu.stanford.smi.protege.storage.clips.Parser
InstanceNameWidget - Class in edu.stanford.smi.protege.widget
  Slot widget for altering the frame name.
InstanceNameWidget() - Constructor for class edu.stanford.smi.protege.widget.InstanceNameWidget
instanceReference() - Method in class edu.stanford.smi.protege.storage.clips.Parser
INSTANCES_VIEW_TITLE - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
InstancesTab - Class in edu.stanford.smi.protege.widget
  The tab for displaying the instances of a class.
InstancesTab() - Constructor for class edu.stanford.smi.protege.widget.InstancesTab
InstanceStorer - Class in edu.stanford.smi.protege.storage.clips
  The class knows how to write out knowledge base instances in clips file format.
InstanceStorer(Writer) - Constructor for class edu.stanford.smi.protege.storage.clips.InstanceStorer
InstanceUtilities - Class in edu.stanford.smi.protege.util
  Utilities for handling project knowledge base instances.
InstanceUtilities() - Constructor for class edu.stanford.smi.protege.util.InstanceUtilities
InstanceValuesComponent - Class in edu.stanford.smi.protege.widget
  A ValuesComponent that can be used to edit a list of instances.
InstanceValuesComponent(Project) - Constructor for class edu.stanford.smi.protege.widget.InstanceValuesComponent
INTEGER - Static variable in interface edu.stanford.smi.protege.model.Model.Cls
INTEGER - Static variable in interface edu.stanford.smi.protege.model.Model.ClsID
INTEGER - Static variable in class edu.stanford.smi.protege.model.ValueType
INTEGER - Static variable in interface edu.stanford.smi.protege.storage.clips.ParserConstants
  RegularExpression Id.
INTEGER_TYPE - Static variable in interface edu.stanford.smi.protege.storage.xml.XMLString.AttributeValue
IntegerField - Class in edu.stanford.smi.protege.util
  Text field for acquiring and displaying an integer.
IntegerField(String) - Constructor for class edu.stanford.smi.protege.util.IntegerField
IntegerFieldWidget - Class in edu.stanford.smi.protege.widget
  A slot widget used to acquire and display an integral value.
IntegerFieldWidget() - Constructor for class edu.stanford.smi.protege.widget.IntegerFieldWidget
IntegerListWidget - Class in edu.stanford.smi.protege.widget
  A slot widget used to acquire and display a list of integral values.
IntegerListWidget() - Constructor for class edu.stanford.smi.protege.widget.IntegerListWidget
IntegerValidator - Class in edu.stanford.smi.protege.util
  Utility class to check a string to see if it is a valid integer.
IntegerValidator() - Constructor for class edu.stanford.smi.protege.util.IntegerValidator
inTransaction() - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
inTransaction() - Method in class edu.stanford.smi.protege.util.transaction.TransactionMonitor
InvalidatableCache<S,V,R> - Class in edu.stanford.smi.protege.util.transaction.cache.impl
  This cache can take a delegate that either does not understand transactions (e.g.
InvalidatableCache(Cache<S, V, R>, boolean) - Constructor for class edu.stanford.smi.protege.util.transaction.cache.impl.InvalidatableCache
invalidate(RemoteSession) - Method in class edu.stanford.smi.protege.server.update.DeferredOperationCache
invalidate() - Method in class edu.stanford.smi.protege.util.DefaultRenderer
invalidate(S) - Method in interface edu.stanford.smi.protege.util.transaction.cache.Cache
  This notifies the cache that this cache is now invalid either because the object that this cache represents is deleted or for any other reason.
invalidate(S) - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.BasicCache
invalidate(S) - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.CompleteableCache
invalidate(S) - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.InvalidatableCache
invalidate(S) - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.ReadCommittedCache
invalidate(S) - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.ReadUncommittedCache
invalidate(S) - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.RepeatableReadCache
invalidateLayout(Container) - Method in class edu.stanford.smi.protege.util.ResizingLayout
InvalidProtegeArg - Exception in edu.stanford.smi.protege.exception
InvalidProtegeArg() - Constructor for exception edu.stanford.smi.protege.exception.InvalidProtegeArg
InvalidProtegeArg(String) - Constructor for exception edu.stanford.smi.protege.exception.InvalidProtegeArg
InvalidProtegeArg(String, Throwable) - Constructor for exception edu.stanford.smi.protege.exception.InvalidProtegeArg
INVERSE - Static variable in interface edu.stanford.smi.protege.model.Model.Facet
INVERSE - Static variable in interface edu.stanford.smi.protege.model.Model.FacetID
INVERSE - Static variable in interface edu.stanford.smi.protege.model.Model.Slot
INVERSE - Static variable in interface edu.stanford.smi.protege.model.Model.SlotID
INVERSE_SLOT - Static variable in interface edu.stanford.smi.protege.storage.clips.ParserConstants
  RegularExpression Id.
INVERSE_SLOT_WIDGET_LABEL - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
inverseSlotProperty(Cls, Slot) - Method in class edu.stanford.smi.protege.storage.clips.Parser
InverseSlotWidget - Class in edu.stanford.smi.protege.widget
  A slot widget that allows the user to set the inverse slot for a given slot.
InverseSlotWidget() - Constructor for class edu.stanford.smi.protege.widget.InverseSlotWidget
invoke(Object, Method, Object[]) - Method in class edu.stanford.smi.protege.model.framestore.AbstractFrameStoreInvocationHandler
invoke(Method, Object[]) - Method in class edu.stanford.smi.protege.model.framestore.AbstractFrameStoreInvocationHandler
invoke(Method, Object[], FrameStore) - Static method in class edu.stanford.smi.protege.model.framestore.AbstractFrameStoreInvocationHandler
invoke(Method, Object[], FrameStore) - Static method in class edu.stanford.smi.protege.model.framestore.FrameStoreMethodInvoker
invoke(Object, Method, Object[]) - Method in class edu.stanford.smi.protege.server.narrowframestore.RemoteClientInvocationHandler
is - Variable in class edu.stanford.smi.protege.server.socket.deflate.CompressingInputStream
IS_A - Static variable in interface edu.stanford.smi.protege.storage.clips.ParserConstants
  RegularExpression Id.
isAborted() - Method in class edu.stanford.smi.protege.util.ExclusiveRunnable
isAbsoluteURI(String) - Static method in class edu.stanford.smi.protege.util.URIUtilities
isAbstract() - Method in interface edu.stanford.smi.protege.model.Cls
isAbstract() - Method in class edu.stanford.smi.protege.model.DefaultCls
isAbstract(Cls) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
isAbstract(Cls) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
isAbstract(String) - Static method in class edu.stanford.smi.protege.model.RoleConstraint
isActive(RemoteSession) - Method in class edu.stanford.smi.protege.server.Server
isActiveWidget(Instance) - Static method in class edu.stanford.smi.protege.model.WidgetDescriptor
isAdminsterServerActivated() - Method in class edu.stanford.smi.protege.server.ServerPanel
isAllowed() - Method in class edu.stanford.smi.protege.util.AllowableAction
isApplet() - Static method in class edu.stanford.smi.protege.util.SystemUtilities
isApplicable() - Method in class edu.stanford.smi.protege.server.framestore.ReadAccessEnforcementFrameStore
isAutosynchronizingClsTrees() - Method in class edu.stanford.smi.protege.ui.ProjectView
isAutosynchronizingClsTrees() - Static method in class edu.stanford.smi.protege.util.ApplicationProperties
isAutoUpdatingFacetValues() - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
  TODO implement or deprecate isAutoUpdatingFacetValues
isAutoUpdatingFacetValues() - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
isBeingDeleted() - Method in class edu.stanford.smi.protege.model.DefaultFrame
isBeingDeleted() - Method in interface edu.stanford.smi.protege.model.Frame
isCacheComplete(Frame) - Static method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
  In practice, if this method returns true, then all direct own slot values for the frame will be cached except possibly for DIRECT-INSTANCES-SLOT.
isCacheComplete() - Method in class edu.stanford.smi.protege.server.update.DeferredOperationCache
isCacheComplete() - Method in interface edu.stanford.smi.protege.util.transaction.cache.Cache
isCacheComplete() - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.BasicCache
isCacheComplete() - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.CompleteableCache
isCacheComplete() - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.InvalidatableCache
isCacheComplete() - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.ReadCommittedCache
isCacheComplete() - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.ReadUncommittedCache
isCacheComplete() - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.RepeatableReadCache
isCached(Frame, Slot, Facet, boolean) - Static method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
  This method returns true if the client has a cached value for the direct own/template slot value for the frame.
isCallCachingEnabled() - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
isCallCachingEnabled() - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreManager
isCallCachingEnabled() - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
isCellEditable(int, int) - Method in class edu.stanford.smi.protege.widget.PropertiesTableModel
isChanged() - Method in class edu.stanford.smi.protege.model.framestore.ChangeMonitorFrameStore
isChanged() - Method in class edu.stanford.smi.protege.widget.PropertiesTableModel
isChangedContent() - Method in class edu.stanford.smi.protege.widget.ProtegePropertiesComponent
isClosed() - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
isClosed() - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
isClsMetaCls() - Method in interface edu.stanford.smi.protege.model.Cls
isClsMetaCls() - Method in class edu.stanford.smi.protege.model.DefaultCls
isClsMetaCls(Cls) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
isClsMetaCls(Cls) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
isCommitted() - Method in class edu.stanford.smi.protege.event.TransactionEvent
isCompatibleProject(Project) - Method in class edu.stanford.smi.protege.plugin.AbstractBackendExportPlugin
isComplete(PropertyList) - Method in interface edu.stanford.smi.protege.model.KnowledgeBaseFactory
isComplete(PropertyList) - Method in class edu.stanford.smi.protege.storage.clips.ClipsKnowledgeBaseFactory
isComplete(PropertyList) - Method in class edu.stanford.smi.protege.storage.database.DatabaseKnowledgeBaseFactory
isComplete() - Method in class edu.stanford.smi.protege.storage.database.DatabaseWizardPage
isComplete(PropertyList) - Method in class edu.stanford.smi.protege.storage.xml.XMLKnowledgeBaseFactory
isConcrete() - Method in interface edu.stanford.smi.protege.model.Cls
isConcrete() - Method in class edu.stanford.smi.protege.model.DefaultCls
isCorrectJavaImplementationClass(FrameID, Collection, Class) - Method in interface edu.stanford.smi.protege.model.FrameFactory
isCorrectJavaImplementationClass(FrameID, Collection, Class) - Method in class edu.stanford.smi.protege.model.framestore.DefaultFrameFactory
isCorrectType(Frame) - Method in class edu.stanford.smi.protege.ui.ClsTreeFinder
isCorrectType(Frame) - Method in class edu.stanford.smi.protege.ui.FrameTreeFinder
isCorrectType(Frame) - Method in class edu.stanford.smi.protege.ui.SlotsTreeFinder
isCurrent() - Method in class edu.stanford.smi.protege.action.LookAndFeelAction
isCustomType() - Method in class edu.stanford.smi.protege.code.generator.wrapping.SlotAtClassCode
isDataFlavorSupported(DataFlavor) - Method in class edu.stanford.smi.protege.util.TransferableCollection
isDefaultClsMetaCls() - Method in interface edu.stanford.smi.protege.model.Cls
isDefaultClsMetaCls() - Method in class edu.stanford.smi.protege.model.DefaultCls
isDefaultClsMetaCls(Cls) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
isDefaultClsMetaCls(Cls) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
isDefaultFacetMetaCls() - Method in interface edu.stanford.smi.protege.model.Cls
isDefaultFacetMetaCls() - Method in class edu.stanford.smi.protege.model.DefaultCls
isDefaultFacetMetaCls(Cls) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
isDefaultFacetMetaCls(Cls) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
isDefaultSlotMetaCls() - Method in interface edu.stanford.smi.protege.model.Cls
isDefaultSlotMetaCls() - Method in class edu.stanford.smi.protege.model.DefaultCls
isDefaultSlotMetaCls(Cls) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
isDefaultSlotMetaCls(Cls) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
isDeleted() - Method in class edu.stanford.smi.protege.model.DefaultFrame
isDeleted() - Method in interface edu.stanford.smi.protege.model.Frame
isDeletingClsEvent() - Method in class edu.stanford.smi.protege.event.ClsEvent
isDeletingFrameEvent() - Method in class edu.stanford.smi.protege.event.FrameEvent
isDeletingInstanceEvent() - Method in class edu.stanford.smi.protege.event.InstanceEvent
isDeletingSlotEvent() - Method in class edu.stanford.smi.protege.event.SlotEvent
isDesignTime() - Method in class edu.stanford.smi.protege.widget.AbstractWidget
isDirectlyCustomizedByUser() - Method in class edu.stanford.smi.protege.model.WidgetDescriptor
isDirectValue(Object) - Method in class edu.stanford.smi.protege.widget.AbstractSlotWidget
isDirty() - Method in class edu.stanford.smi.protege.model.Project
isDirty() - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
isDirty() - Method in class edu.stanford.smi.protege.server.RemoteClientProject
isDirty() - Method in class edu.stanford.smi.protege.server.ServerProject
isDisabled(RemoteSession) - Method in class edu.stanford.smi.protege.server.framestore.background.FrameCalculator
isDisplayingSlot(Cls, Slot) - Method in class edu.stanford.smi.protege.ui.InstanceDisplay
isDisplayingSubclasses() - Method in class edu.stanford.smi.protege.ui.ClsesPanel
isDragAndDropEnabled(JComponent) - Static method in class edu.stanford.smi.protege.util.ComponentUtilities
isDuplicate() - Method in class edu.stanford.smi.protege.util.LazyTreeNode
isEditable() - Method in class edu.stanford.smi.protege.model.DefaultFrame
isEditable() - Method in interface edu.stanford.smi.protege.model.Frame
isEditable() - Method in class edu.stanford.smi.protege.widget.TextComponentWidget
isEmpty() - Method in class edu.stanford.smi.protege.model.framestore.Record
isEnabled(FrameStore) - Static method in class edu.stanford.smi.protege.model.framestore.FrameStoreManager
isEnabled() - Method in class edu.stanford.smi.protege.util.SwitchableListener
isExportBrowserTextEnabled() - Method in class edu.stanford.smi.protege.action.ExportToCsvAction
isExportBrowserTextEnabled() - Static method in class edu.stanford.smi.protege.action.ExportToCsvUtil
isExportBrowserTextEnabled() - Method in class edu.stanford.smi.protege.ui.ExportConfigurationPanel
isExportHeader() - Method in class edu.stanford.smi.protege.action.ExportToCsvAction
isExportHeaderEnabled() - Method in class edu.stanford.smi.protege.ui.ExportConfigurationPanel
isExportMetadata() - Method in class edu.stanford.smi.protege.action.ExportToCsvAction
isExportMetadata() - Static method in class edu.stanford.smi.protege.action.ExportToCsvUtil
isExportMetadataEnabled() - Method in class edu.stanford.smi.protege.ui.ExportConfigurationPanel
isExportSuperclass() - Method in class edu.stanford.smi.protege.action.ExportToCsvAction
isExportSuperclass() - Static method in class edu.stanford.smi.protege.action.ExportToCsvUtil
isExportSuperclassEnabled() - Method in class edu.stanford.smi.protege.ui.ExportConfigurationPanel
isExportTypes() - Method in class edu.stanford.smi.protege.action.ExportToCsvAction
isExportTypesEnabled() - Method in class edu.stanford.smi.protege.ui.ExportConfigurationPanel
isFacetMetaCls() - Method in interface edu.stanford.smi.protege.model.Cls
isFacetMetaCls() - Method in class edu.stanford.smi.protege.model.DefaultCls
isFacetMetaCls(Cls) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
isFacetMetaCls(Cls) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
isGroupOperationAllowed(RemoteSession, Operation, String) - Method in interface edu.stanford.smi.protege.server.RemoteServer
isGroupOperationAllowed(RemoteSession, Operation, String) - Method in class edu.stanford.smi.protege.server.Server
isHidden(Frame) - Method in class edu.stanford.smi.protege.model.Project
isHiddenByTransaction() - Method in class edu.stanford.smi.protege.util.SessionEvent
isIncluded() - Method in class edu.stanford.smi.protege.model.DefaultFrame
isIncluded() - Method in interface edu.stanford.smi.protege.model.Frame
isIncluded() - Method in class edu.stanford.smi.protege.model.WidgetDescriptor
isInvalid() - Method in class edu.stanford.smi.protege.server.update.DeferredOperationCache
isInvalid() - Method in interface edu.stanford.smi.protege.util.transaction.cache.Cache
  This indicates that the cache has entered the deleted state or is otherwise invalid.
isInvalid() - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.BasicCache
isInvalid() - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.CompleteableCache
isInvalid() - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.InvalidatableCache
isInvalid() - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.ReadCommittedCache
isInvalid() - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.ReadUncommittedCache
isInvalid() - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.RepeatableReadCache
isJournalingEnabled() - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
isJournalingEnabled() - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreManager
isJournalingEnabled() - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
isJournalingEnabled() - Method in class edu.stanford.smi.protege.model.Project
isLeaf() - Method in class edu.stanford.smi.protege.util.LazyTreeNode
isLoadableClass(String) - Static method in class edu.stanford.smi.protege.plugin.PluginUtilities
isLoading() - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
  TODO implement or deprecate isLoading
isLoading() - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
isMac() - Static method in class edu.stanford.smi.protege.util.SystemUtilities
isMatch(String) - Method in class edu.stanford.smi.protege.util.SimpleStringMatcher
isMatch(String) - Method in interface edu.stanford.smi.protege.util.StringMatcher
isMetaCls() - Method in interface edu.stanford.smi.protege.model.Cls
isMetaCls() - Method in class edu.stanford.smi.protege.model.DefaultCls
isMetaCls(Cls) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
isMetaCls(Cls) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
isModification(Method) - Static method in class edu.stanford.smi.protege.model.framestore.AbstractFrameStoreInvocationHandler
isMsAccess() - Method in class edu.stanford.smi.protege.storage.database.RobustConnection
isMultiple() - Method in class edu.stanford.smi.protege.code.generator.wrapping.SlotAtClassCode
isMultiUserClient() - Method in class edu.stanford.smi.protege.model.Project
isMultiUserClient() - Method in class edu.stanford.smi.protege.server.RemoteClientProject
isMultiUserServer() - Method in class edu.stanford.smi.protege.model.Project
isMySql() - Method in class edu.stanford.smi.protege.storage.database.RobustConnection
isNewProject(KnowledgeBase) - Static method in class edu.stanford.smi.protege.model.Project
isNull() - Method in class edu.stanford.smi.protege.model.WidgetDescriptor
isNullValue(Object) - Static method in class edu.stanford.smi.protege.storage.database.AbstractDatabaseFrameDb
isOpaque() - Method in class edu.stanford.smi.protege.util.DefaultRenderer
isOperationAllowed(KnowledgeBase, Operation) - Static method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
isOperationAllowed(RemoteSession, Operation, String) - Method in interface edu.stanford.smi.protege.server.RemoteServer
isOperationAllowed(RemoteSession, Operation, String) - Method in class edu.stanford.smi.protege.server.Server
isOperationAllowed(RemoteServer, RemoteSession, String, Operation) - Static method in class edu.stanford.smi.protege.server.util.RemoteProjectUtil
  Checks whether the operation is allowed for a session on a remote project.
isOperationAuthorized(User, Operation, PolicyControlledObject) - Method in class edu.stanford.smi.protege.server.metaproject.impl.PolicyImpl
isOperationAuthorized(User, Operation, PolicyControlledObject) - Method in interface edu.stanford.smi.protege.server.metaproject.Policy
isOracle() - Method in class edu.stanford.smi.protege.storage.database.RobustConnection
isOWL(KnowledgeBase) - Static method in class edu.stanford.smi.protege.plugin.PluginUtilities
isOWLAvailable() - Static method in class edu.stanford.smi.protege.plugin.PluginUtilities
isOwnSlot() - Method in class edu.stanford.smi.protege.model.framestore.Sft
isPageComplete() - Method in class edu.stanford.smi.protege.util.WizardPage
isPluginAvailable(String) - Static method in class edu.stanford.smi.protege.plugin.PluginUtilities
isPolicyModifiableByClient() - Method in class edu.stanford.smi.protege.server.metaproject.impl.PolicyControlledObjectImpl
isPolicyModifiableByClient() - Method in interface edu.stanford.smi.protege.server.metaproject.PolicyControlledObject
isPostgres() - Method in class edu.stanford.smi.protege.storage.database.RobustConnection
isPosting(Object) - Method in class edu.stanford.smi.protege.util.ListenerCollection
isPosting(Object) - Method in class edu.stanford.smi.protege.util.ListenerList
isPosting(Object) - Method in class edu.stanford.smi.protege.util.ListenerMap
isPostingEnabled() - Method in class edu.stanford.smi.protege.util.ListenerCollection
isPrimitive() - Method in class edu.stanford.smi.protege.code.generator.wrapping.SlotAtClassCode
isQuery(Method) - Static method in class edu.stanford.smi.protege.model.framestore.AbstractFrameStoreInvocationHandler
isReachable(X) - Method in class edu.stanford.smi.protege.util.Tree
isReadonly() - Method in class edu.stanford.smi.protege.model.Project
isReadOnlyConfiguredWidget() - Method in class edu.stanford.smi.protege.widget.AbstractSlotWidget
isReplacementEvent() - Method in interface edu.stanford.smi.protege.event.Event
isReplacementEvent() - Method in class edu.stanford.smi.protege.util.AbstractEvent
  This call tells whether this event was generated as a result of a replaceFrame operation.
isRoot() - Method in interface edu.stanford.smi.protege.model.Cls
isRoot() - Method in class edu.stanford.smi.protege.model.DefaultCls
isRuntime() - Method in class edu.stanford.smi.protege.widget.AbstractWidget
isServerOperationAllowed(RemoteSession, Operation) - Method in interface edu.stanford.smi.protege.server.RemoteServer
isServerOperationAllowed(RemoteSession, Operation, String) - Method in interface edu.stanford.smi.protege.server.RemoteServer
isServerOperationAllowed(RemoteSession, Operation) - Method in class edu.stanford.smi.protege.server.Server
isServerOperationAllowed(RemoteSession, Operation, String) - Method in class edu.stanford.smi.protege.server.Server
isServerOperationAllowed(RemoteServer, RemoteSession, Operation) - Static method in class edu.stanford.smi.protege.server.util.RemoteProjectUtil
isShowingFirstPage() - Method in class edu.stanford.smi.protege.util.Wizard
isShowingLastPage() - Method in class edu.stanford.smi.protege.util.Wizard
isShowingProject() - Method in class edu.stanford.smi.protege.model.KnowledgeBaseSourcesEditor
isSimple() - Method in class edu.stanford.smi.protege.model.BrowserSlotPattern
isSlotAtCls() - Method in class edu.stanford.smi.protege.widget.AbstractSlotWidget
isSlotMetaCls() - Method in interface edu.stanford.smi.protege.model.Cls
isSlotMetaCls() - Method in class edu.stanford.smi.protege.model.DefaultCls
isSlotMetaCls(Cls) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
isSlotMetaCls(Cls) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
isSorted() - Method in class edu.stanford.smi.protege.util.LazyTreeNode
isSqlServer() - Method in class edu.stanford.smi.protege.storage.database.RobustConnection
isStorable(Cls) - Static method in class edu.stanford.smi.protege.storage.clips.ClsStorer
isStorableInstance(Instance) - Method in class edu.stanford.smi.protege.storage.clips.InstanceStorer
isStorableSlot(Instance, Slot) - Method in class edu.stanford.smi.protege.storage.clips.InstanceStorer
isSuitable(Project, Collection) - Static method in class edu.stanford.smi.protege.widget.AbstractTabWidget
isSuitable(Cls, Slot, Facet) - Static method in class edu.stanford.smi.protege.widget.BooleanListWidget
isSuitable(Cls, Slot, Facet) - Static method in class edu.stanford.smi.protege.widget.CheckBoxWidget
isSuitable(Cls, Slot, Facet) - Static method in class edu.stanford.smi.protege.widget.ClsFieldWidget
isSuitable(Cls, Slot, Facet) - Static method in class edu.stanford.smi.protege.widget.ClsListWidget
isSuitable(Cls, Slot, Facet) - Static method in class edu.stanford.smi.protege.widget.ComboBoxWidget
isSuitable(Cls, Slot, Facet) - Static method in class edu.stanford.smi.protege.widget.ConstraintsWidget
isSuitable(Cls, Slot, Facet) - Static method in class edu.stanford.smi.protege.widget.DefaultValuesWidget
isSuitable(Cls, Slot, Facet, String) - Method in class edu.stanford.smi.protege.widget.DefaultWidgetMapper
isSuitable(Cls, Slot, Facet) - Static method in class edu.stanford.smi.protege.widget.DigestedPasswordWidget
isSuitable(Cls, Slot, Facet) - Static method in class edu.stanford.smi.protege.widget.DocumentationWidget
isSuitable(Cls, Slot, Facet) - Static method in class edu.stanford.smi.protege.widget.FloatFieldWidget
isSuitable(Cls, Slot, Facet) - Static method in class edu.stanford.smi.protege.widget.FloatListWidget
isSuitable(Project, Collection) - Static method in class edu.stanford.smi.protege.widget.FormsTab
isSuitable(WidgetDescriptor, Cls, Slot) - Method in class edu.stanford.smi.protege.widget.FormWidget
isSuitable(Cls, Slot, Facet) - Static method in class edu.stanford.smi.protege.widget.InstanceFieldWidget
isSuitable(Cls, Slot, Facet) - Static method in class edu.stanford.smi.protege.widget.InstanceListWidget
isSuitable(Cls, Slot, Facet) - Static method in class edu.stanford.smi.protege.widget.InstanceNameWidget
isSuitable(Cls, Slot, Facet) - Static method in class edu.stanford.smi.protege.widget.IntegerFieldWidget
isSuitable(Cls, Slot, Facet) - Static method in class edu.stanford.smi.protege.widget.IntegerListWidget
isSuitable(Cls, Slot, Facet) - Static method in class edu.stanford.smi.protege.widget.InverseSlotWidget
isSuitable(Cls, Slot, Facet) - Static method in class edu.stanford.smi.protege.widget.MaximumCardinalityWidget
isSuitable(Cls, Slot, Facet) - Static method in class edu.stanford.smi.protege.widget.MinimumCardinalityWidget
isSuitable(Cls, Slot, Facet) - Static method in class edu.stanford.smi.protege.widget.NumericMaximumWidget
isSuitable(Cls, Slot, Facet) - Static method in class edu.stanford.smi.protege.widget.NumericMinimumWidget
isSuitable(Cls, Slot, Facet) - Static method in class edu.stanford.smi.protege.widget.RoleWidget
isSuitable(Cls, Slot, Facet) - Static method in class edu.stanford.smi.protege.widget.SlotValuesWidget
isSuitable(Cls, Slot, Facet) - Static method in class edu.stanford.smi.protege.widget.StringListWidget
isSuitable(Cls, Slot, Facet) - Static method in class edu.stanford.smi.protege.widget.SubclassWidget
isSuitable(Cls, Slot, Facet) - Static method in class edu.stanford.smi.protege.widget.SuperclassWidget
isSuitable(Cls, Slot, Facet) - Static method in class edu.stanford.smi.protege.widget.SymbolListWidget
isSuitable(Cls, Slot, Facet) - Static method in class edu.stanford.smi.protege.widget.TemplateSlotsWidget
isSuitable(Cls, Slot, Facet) - Static method in class edu.stanford.smi.protege.widget.TextComponentWidget
isSuitable(Cls, Slot, Facet) - Static method in class edu.stanford.smi.protege.widget.ValueTypeWidget
isSuitable(Cls, Slot, Facet) - Static method in class edu.stanford.smi.protege.widget.YellowStickyWidget
isSuitableCreateProjectFromFilePlugin(CreateProjectFromFilePlugin, String) - Static method in class edu.stanford.smi.protege.plugin.PluginUtilities
isSuitableExport(Project, ExportPlugin) - Static method in class edu.stanford.smi.protege.widget.WidgetUtilities
isSuitableTab(String, Project, Collection) - Static method in class edu.stanford.smi.protege.widget.WidgetUtilities
isSuitableWidget(Cls, Slot, Facet, WidgetDescriptor) - Method in class edu.stanford.smi.protege.model.Project
isSuitableWidget(Cls, Slot, Facet, WidgetDescriptor) - Method in class edu.stanford.smi.protege.widget.DefaultWidgetMapper
isSuitableWidget(Cls, Slot, Facet, WidgetDescriptor) - Method in interface edu.stanford.smi.protege.widget.WidgetMapper
isSwapedHeader() - Method in class edu.stanford.smi.protege.util.LabeledComponent
isSystem() - Method in class edu.stanford.smi.protege.model.DefaultFrame
isSystem() - Method in interface edu.stanford.smi.protege.model.Frame
isSystem(Frame) - Method in class edu.stanford.smi.protege.model.SystemFrames
isTargetFullCache() - Method in class edu.stanford.smi.protege.server.framestore.background.WorkInfo
isTemplate() - Method in class edu.stanford.smi.protege.model.framestore.Record
isTemplate() - Method in class edu.stanford.smi.protege.model.framestore.ReferenceImpl
isTemplate() - Method in interface edu.stanford.smi.protege.model.Reference
isTemplateFacet() - Method in class edu.stanford.smi.protege.model.framestore.Sft
isTemplateSlot() - Method in class edu.stanford.smi.protege.model.framestore.Sft
isTemporary() - Method in class edu.stanford.smi.protege.model.WidgetDescriptor
isUndoEnabled() - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
isUndoEnabled() - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreManager
isUndoEnabled() - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
isUndoOptionEnabled() - Method in class edu.stanford.smi.protege.model.Project
isUnique(String) - Method in class edu.stanford.smi.protege.widget.UniqueStringWidget
isURI(String) - Static method in class edu.stanford.smi.protege.util.URIUtilities
isValid() - Method in class edu.stanford.smi.protege.model.DefaultFrame
  Deprecated.
isValid() - Method in interface edu.stanford.smi.protege.model.Frame
  Deprecated. Use #isDeleted()
isValid(String, Frame) - Method in interface edu.stanford.smi.protege.model.FrameNameValidator
isValid() - Method in class edu.stanford.smi.protege.resource.BundleHelper
isValid(Object) - Method in class edu.stanford.smi.protege.util.FloatValidator
isValid(Object) - Method in class edu.stanford.smi.protege.util.IntegerValidator
isValid(Object) - Method in class edu.stanford.smi.protege.util.SymbolValidator
isValid() - Method in class edu.stanford.smi.protege.util.transaction.cache.CacheResult
isValid(Object) - Method in interface edu.stanford.smi.protege.util.Validator
isValidCharacter(char, int) - Method in class edu.stanford.smi.protege.model.framestore.DefaultFrameFactory
isValidFrameName(String, Frame) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
isValidFrameName(String, Frame) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
isValidOwnSlotValue(Slot, Object) - Method in class edu.stanford.smi.protege.model.DefaultFrame
isValidOwnSlotValue(Frame, Slot, Object) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
isValidOwnSlotValue(Slot, Object) - Method in interface edu.stanford.smi.protege.model.Frame
isValidOwnSlotValue(Frame, Slot, Object) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
isValidURI(String) - Static method in class edu.stanford.smi.protege.util.URIUtilities
isValidValue(Frame, Slot, Object, Collection) - Method in class edu.stanford.smi.protege.model.AbstractFacetConstraint
isValidValue(Frame, Slot, Object) - Method in class edu.stanford.smi.protege.model.DefaultFacet
isValidValue(Frame, Slot, Object) - Method in interface edu.stanford.smi.protege.model.Facet
isValidValue(Frame, Slot, Object, Collection) - Method in interface edu.stanford.smi.protege.model.FacetConstraint
isVerticallyStretchable() - Method in class edu.stanford.smi.protege.util.LabeledComponent
isVisible() - Method in class edu.stanford.smi.protege.model.DefaultFrame
isVisible() - Method in interface edu.stanford.smi.protege.model.Frame
isVisible() - Method in class edu.stanford.smi.protege.model.WidgetDescriptor
isVisible(X) - Method in class edu.stanford.smi.protege.util.TreeSelectionHelper
isVisibleInGUI(Frame) - Static method in class edu.stanford.smi.protege.model.ModelUtilities
isWindows() - Static method in class edu.stanford.smi.protege.util.SystemUtilities
itemStateChanged(ItemEvent) - Method in class edu.stanford.smi.protege.util.SwitchableItemListener

## J

JAVA_CODE_GEN_ACTION_NAME - Static variable in class edu.stanford.smi.protege.code.generator.wrapping.JavaCodeGeneratorAction
JavaCodeGenerator - Class in edu.stanford.smi.protege.code.generator.wrapping
JavaCodeGenerator(KnowledgeBase, JavaCodeGeneratorOptions) - Constructor for class edu.stanford.smi.protege.code.generator.wrapping.JavaCodeGenerator
JavaCodeGeneratorAction - Class in edu.stanford.smi.protege.code.generator.wrapping
JavaCodeGeneratorAction(KnowledgeBase) - Constructor for class edu.stanford.smi.protege.code.generator.wrapping.JavaCodeGeneratorAction
JavaCodeGeneratorOptions - Interface in edu.stanford.smi.protege.code.generator.wrapping
JavaCodeGeneratorPanel - Class in edu.stanford.smi.protege.code.generator.wrapping
JavaCodeGeneratorPanel(KnowledgeBase, EditableJavaCodeGeneratorOptions) - Constructor for class edu.stanford.smi.protege.code.generator.wrapping.JavaCodeGeneratorPanel
JFrameToFront - Class in edu.stanford.smi.protege.action
  Action to bring a particular frame to the front and give it the focus.
JFrameToFront(JFrame) - Constructor for class edu.stanford.smi.protege.action.JFrameToFront
jj_nt - Variable in class edu.stanford.smi.protege.storage.clips.Parser
  Next token.
jjFillToken() - Method in class edu.stanford.smi.protege.storage.clips.ParserTokenManager
jjstrLiteralImages - Static variable in class edu.stanford.smi.protege.storage.clips.ParserTokenManager
  Token literal values.
JournalFormater - Class in edu.stanford.smi.protege.model.framestore
  TODO Class Comment
JournalFormater() - Constructor for class edu.stanford.smi.protege.model.framestore.JournalFormater
JournalingFrameStoreHandler - Class in edu.stanford.smi.protege.model.framestore
JournalingFrameStoreHandler() - Constructor for class edu.stanford.smi.protege.model.framestore.JournalingFrameStoreHandler
journaller_name - Static variable in class edu.stanford.smi.protege.model.framestore.JournalingFrameStoreHandler

## K

KAToolTab - Class in edu.stanford.smi.protege.widget
  A tab the mimics the old "KA Tool" application from Protege/Win.
KAToolTab() - Constructor for class edu.stanford.smi.protege.widget.KAToolTab
KAToolTabConfigurationPanel - Class in edu.stanford.smi.protege.widget
  Panel that allows a user to configure the KA Tool tab.
KAToolTabConfigurationPanel(KAToolTab) - Constructor for class edu.stanford.smi.protege.widget.KAToolTabConfigurationPanel
KB - Static variable in class edu.stanford.smi.protege.server.socket.deflate.CompressingOutputStream
KB - Static variable in class edu.stanford.smi.protege.server.socket.MonitoringAspect
KET - Static variable in interface edu.stanford.smi.protege.storage.clips.ParserConstants
  RegularExpression Id.
KEYMANAGER_ALGORITHM - Static variable in class edu.stanford.smi.protege.server.socket.SSLFactory
KEYSTORE_TYPE - Static variable in class edu.stanford.smi.protege.server.socket.SSLFactory
keyword() - Method in class edu.stanford.smi.protege.storage.clips.Parser
killOtherUserSession(RemoteSession, RemoteSession) - Method in interface edu.stanford.smi.protege.server.RemoteServer
killOtherUserSession(RemoteSession, RemoteSession, int) - Method in interface edu.stanford.smi.protege.server.RemoteServer
killOtherUserSession(RemoteSession, RemoteSession) - Method in class edu.stanford.smi.protege.server.Server
killOtherUserSession(RemoteSession, RemoteSession, int) - Method in class edu.stanford.smi.protege.server.Server
kind - Variable in class edu.stanford.smi.protege.storage.clips.Token
  An integer that describes the kind of this token.
KNOWLEDGE_BASE - Static variable in interface edu.stanford.smi.protege.storage.xml.XMLString.ElementName
KnowledgeBase - Interface in edu.stanford.smi.protege.model
  A container for frames.
KnowledgeBaseAdapter - Class in edu.stanford.smi.protege.event
  Adapter for the listener interface for Knowledge base events.
KnowledgeBaseAdapter() - Constructor for class edu.stanford.smi.protege.event.KnowledgeBaseAdapter
KnowledgeBaseEvent - Class in edu.stanford.smi.protege.event
  Event generated when the knowledge base changes.
KnowledgeBaseEvent(KnowledgeBase, int, Frame) - Constructor for class edu.stanford.smi.protege.event.KnowledgeBaseEvent
KnowledgeBaseEvent(KnowledgeBase, int, Frame, Object) - Constructor for class edu.stanford.smi.protege.event.KnowledgeBaseEvent
KnowledgeBaseEvent(KnowledgeBase, int, Frame, Object, Object) - Constructor for class edu.stanford.smi.protege.event.KnowledgeBaseEvent
KnowledgeBaseFactory - Interface in edu.stanford.smi.protege.model
  A factory for creating a KnowledgeBase implementation.
KnowledgeBaseFactory2 - Interface in edu.stanford.smi.protege.model
KnowledgeBaseListener - Interface in edu.stanford.smi.protege.event
  Interface for notification of knowledge-base events The frame that has been added or removed from the knowledge-base is available through the KnowledgeBaseEvent.getFrame() call.
KnowledgeBaseSourcesEditor - Class in edu.stanford.smi.protege.model
  Base class that provides convenience and template methods for backend developers to extend.
KnowledgeBaseSourcesEditor(String, PropertyList) - Constructor for class edu.stanford.smi.protege.model.KnowledgeBaseSourcesEditor
KnowledgeBaseUtils - Class in edu.stanford.smi.protege.storage.database
KnowledgeBaseUtils() - Constructor for class edu.stanford.smi.protege.storage.database.KnowledgeBaseUtils
KnownDatabase - Enum in edu.stanford.smi.protege.storage.database

## L

LABEL_CHANGED - Static variable in class edu.stanford.smi.protege.event.WidgetEvent
labelChanged(WidgetEvent) - Method in class edu.stanford.smi.protege.event.WidgetAdapter
labelChanged(WidgetEvent) - Method in interface edu.stanford.smi.protege.event.WidgetListener
LabeledComponent - Class in edu.stanford.smi.protege.util
  The component that handles the standard layout of slot widgets.
LabeledComponent(String, Component) - Constructor for class edu.stanford.smi.protege.util.LabeledComponent
LabeledComponent(String, Component, boolean) - Constructor for class edu.stanford.smi.protege.util.LabeledComponent
LabeledComponent(String, Component, boolean, boolean) - Constructor for class edu.stanford.smi.protege.util.LabeledComponent
LabeledComponent(String, JScrollPane) - Constructor for class edu.stanford.smi.protege.util.LabeledComponent
LARGE_BUTTON_HEIGHT - Static variable in class edu.stanford.smi.protege.util.ComponentFactory
LAST_FILE_DIRECTORY - Static variable in class edu.stanford.smi.protege.util.ApplicationProperties
LAST_LOADED_URI - Static variable in class edu.stanford.smi.protege.util.ApplicationProperties
lastIndexOf(Object) - Method in class edu.stanford.smi.protege.util.HashList
  Deprecated. Returns the index in this list of the last occurrence of the specified element, or -1 if the list does not contain this element.
LastUsageInvocationHandler - Class in edu.stanford.smi.protege.server.framestore
LastUsageInvocationHandler(ProjectInstance, FrameCalculator) - Constructor for class edu.stanford.smi.protege.server.framestore.LastUsageInvocationHandler
layout(Container, int) - Method in class edu.stanford.smi.protege.widget.DefaultWidgetLayoutStrategy
layout(Container, int) - Method in interface edu.stanford.smi.protege.widget.WidgetLayoutStrategy
LAYOUT_CHANGED - Static variable in class edu.stanford.smi.protege.event.WidgetEvent
layoutChanged(WidgetEvent) - Method in class edu.stanford.smi.protege.event.WidgetAdapter
layoutChanged(WidgetEvent) - Method in interface edu.stanford.smi.protege.event.WidgetListener
layoutComponents(Box) - Method in class edu.stanford.smi.protege.storage.database.DatabaseWizardPage
layoutContainer(Container) - Method in class edu.stanford.smi.protege.util.ResizingLayout
layoutLikeCls(Cls) - Method in interface edu.stanford.smi.protege.widget.ClsWidget
layoutLikeCls(Cls) - Method in class edu.stanford.smi.protege.widget.FormWidget
layoutLikeCls(Cls) - Method in class edu.stanford.smi.protege.widget.UglyClsWidget
layoutLikeParent() - Method in class edu.stanford.smi.protege.widget.FormWidget
LazyTreeModel - Class in edu.stanford.smi.protege.util
  TreeModel for holding LazyTreeRoots and LazyTreeNodes.
LazyTreeModel() - Constructor for class edu.stanford.smi.protege.util.LazyTreeModel
LazyTreeModel(LazyTreeRoot) - Constructor for class edu.stanford.smi.protege.util.LazyTreeModel
LazyTreeNode - Class in edu.stanford.smi.protege.util
  A tree node that doesn't check its children until it is asked for them.
LazyTreeNode(LazyTreeNode, Object) - Constructor for class edu.stanford.smi.protege.util.LazyTreeNode
LazyTreeNode(LazyTreeNode, Object, boolean) - Constructor for class edu.stanford.smi.protege.util.LazyTreeNode
LazyTreeNodeFrameComparator - Class in edu.stanford.smi.protege.ui
  Comparator for LazyTreeNode that just delegates the comparison the the wrapped user objects.
LazyTreeNodeFrameComparator() - Constructor for class edu.stanford.smi.protege.ui.LazyTreeNodeFrameComparator
LazyTreeRoot - Class in edu.stanford.smi.protege.util
  The Root node for a lazy tree.
LazyTreeRoot(Object) - Constructor for class edu.stanford.smi.protege.util.LazyTreeRoot
LazyTreeRoot(Collection) - Constructor for class edu.stanford.smi.protege.util.LazyTreeRoot
LazyTreeRoot(Object, boolean) - Constructor for class edu.stanford.smi.protege.util.LazyTreeRoot
LazyTreeRoot(Collection, boolean) - Constructor for class edu.stanford.smi.protege.util.LazyTreeRoot
LegacyLoggerImpl - Class in edu.stanford.smi.protege.util
  TODO Class Comment
LegacyLoggerImpl(Logger) - Constructor for class edu.stanford.smi.protege.util.LegacyLoggerImpl
LESS_THAN - Static variable in interface edu.stanford.smi.protege.model.query.Query
LESS_THAN_OR_EQUAL_TO - Static variable in interface edu.stanford.smi.protege.model.query.Query
letOtherThreadsRun() - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
LexicalError(boolean, int, int, int, String, char) - Static method in error edu.stanford.smi.protege.storage.clips.TokenMgrError
  Returns a detailed message for the Error when it is thrown by the token manager to indicate a lexical error.
lexStateNames - Static variable in class edu.stanford.smi.protege.storage.clips.ParserTokenManager
  Lexer state names.
line - Variable in class edu.stanford.smi.protege.storage.clips.SimpleCharStream
ListDragSourceListener - Class in edu.stanford.smi.protege.util
  A drag source listener for a list box.
ListDragSourceListener() - Constructor for class edu.stanford.smi.protege.util.ListDragSourceListener
ListenerCollection - Class in edu.stanford.smi.protege.util
  Base class for collections of listeners.
ListenerCollection(EventDispatcher) - Constructor for class edu.stanford.smi.protege.util.ListenerCollection
ListenerList - Class in edu.stanford.smi.protege.util
  Maintains a list of listeners to a particular source.
ListenerList(EventDispatcher) - Constructor for class edu.stanford.smi.protege.util.ListenerList
ListenerMap - Class in edu.stanford.smi.protege.util
  Maintains a collection of listeners for each of a set of sources (that is, each source has its own set of listeners).
ListenerMap(EventDispatcher) - Constructor for class edu.stanford.smi.protege.util.ListenerMap
ListFinder - Class in edu.stanford.smi.protege.ui
  Implementation of Finder that will work on a generic JList.
ListFinder(JList, ResourceKey) - Constructor for class edu.stanford.smi.protege.ui.ListFinder
ListFinder(JList, String, Icon) - Constructor for class edu.stanford.smi.protege.ui.ListFinder
ListFinder(JList, String) - Constructor for class edu.stanford.smi.protege.ui.ListFinder
listIterator(int) - Method in class edu.stanford.smi.protege.util.HashList
  Deprecated. Returns a list-iterator of the elements in this list (in proper sequence), starting at the specified position in the list.
ListMultiMap<X,Y> - Class in edu.stanford.smi.protege.util
  Deprecated. - use ArrayListMultiMap instead
ListMultiMap() - Constructor for class edu.stanford.smi.protege.util.ListMultiMap
  Deprecated.
ListMultiMap(int) - Constructor for class edu.stanford.smi.protege.util.ListMultiMap
  Deprecated.
ListSelectionListenerAdapter - Class in edu.stanford.smi.protege.util
  An adapter that allows a generic `SelectionListener` to be notified when list selection events occur.
ListSelectionListenerAdapter(Selectable) - Constructor for class edu.stanford.smi.protege.util.ListSelectionListenerAdapter
ListTarget - Class in edu.stanford.smi.protege.util
  A standard implementation of the drag target interface for dragging items around in a list box.
ListTarget() - Constructor for class edu.stanford.smi.protege.util.ListTarget
listValuesContain(JList, Object) - Static method in class edu.stanford.smi.protege.util.ComponentUtilities
load(Instance, KnowledgeBase) - Static method in class edu.stanford.smi.protege.model.PropertyMapUtil
load() - Method in class edu.stanford.smi.protege.storage.xml.XMLLoader
load(Object) - Method in class edu.stanford.smi.protege.ui.CardinalityFacetRenderer
load(Object) - Method in class edu.stanford.smi.protege.ui.DefaultValueRenderer
load(Object) - Method in class edu.stanford.smi.protege.ui.FactoryRenderer
load(Object) - Method in class edu.stanford.smi.protege.ui.FormRenderer
load(Object) - Method in class edu.stanford.smi.protege.ui.FrameRenderer
load(Object) - Method in class edu.stanford.smi.protege.ui.FrameWithBrowserTextRenderer
load(Object) - Method in class edu.stanford.smi.protege.ui.LocaleRenderer
load(Object) - Method in class edu.stanford.smi.protege.ui.OtherFacetsRenderer
load(Object) - Method in class edu.stanford.smi.protege.ui.OwnSlotValueFrameRenderer
load(Frame, Slot) - Method in class edu.stanford.smi.protege.ui.RelationshipPane
load(Object) - Method in class edu.stanford.smi.protege.ui.SlotPairRenderer
load(Object) - Method in class edu.stanford.smi.protege.ui.TypeFacetRenderer
load(Object) - Method in class edu.stanford.smi.protege.ui.WidgetClassNameRenderer
load(Object) - Method in class edu.stanford.smi.protege.util.DefaultRenderer
load(Object) - Method in class edu.stanford.smi.protege.widget.ValueTypeRenderer
load(Object) - Method in class edu.stanford.smi.protege.widget.WidgetDescriptorRenderer
loadBrowserSlots(Instance) - Method in class edu.stanford.smi.protege.model.Project
loadChildObjects(Collection) - Method in class edu.stanford.smi.protege.util.LazyTreeNode
  Do not override or call this method in a subclass, unless you know what you are doing.
loadClass(String, String, ClassLoader) - Method in class edu.stanford.smi.protege.server.ProtegeRmiClassLoaderSpi
loadCls(Cls) - Method in class edu.stanford.smi.protege.ui.FrameRenderer
loadClses(KnowledgeBase, boolean, Collection) - Method in class edu.stanford.smi.protege.storage.clips.Parser
loadComponent(Selectable) - Method in class edu.stanford.smi.protege.ui.ClsesPanel
loadComponent(Selectable, ResourceKey) - Method in class edu.stanford.smi.protege.ui.ClsesPanel
loadComponent(Selectable, String) - Method in class edu.stanford.smi.protege.ui.ClsesPanel
loadDuplicate(Object) - Method in class edu.stanford.smi.protege.ui.FrameRenderer
loadDuplicate(Object) - Method in class edu.stanford.smi.protege.util.DefaultRenderer
loadFacet(Facet) - Method in class edu.stanford.smi.protege.ui.FrameRenderer
loadHeader() - Method in class edu.stanford.smi.protege.ui.InstanceDisplay
loadHeaderLabel(Instance) - Method in class edu.stanford.smi.protege.ui.InstanceDisplay
loadHeaderWithCls(Cls) - Method in class edu.stanford.smi.protege.ui.InstanceDisplay
loadHeaderWithSimpleInstance(Instance) - Method in class edu.stanford.smi.protege.ui.InstanceDisplay
loadHeaderWithSlot(Slot) - Method in class edu.stanford.smi.protege.ui.InstanceDisplay
loadImageIcon(Class, String) - Static method in class edu.stanford.smi.protege.util.ComponentUtilities
  Loads a icon from either the file system or from a jar.
loadIncludedProjects(URI, Instance, Collection) - Method in class edu.stanford.smi.protege.model.Project
loadInstance(Instance) - Method in class edu.stanford.smi.protege.ui.FrameRenderer
loadInstances(KnowledgeBase, boolean, Collection) - Method in class edu.stanford.smi.protege.storage.clips.Parser
loadInstances() - Method in class edu.stanford.smi.protege.ui.SelectInstancesPanel
loadKnowledgeBase(KnowledgeBase, PropertyList, Collection) - Method in class edu.stanford.smi.protege.model.AbstractKnowledgeBaseFactory
loadKnowledgeBase(KnowledgeBase, PropertyList, boolean, Collection) - Method in class edu.stanford.smi.protege.model.AbstractKnowledgeBaseFactory
loadKnowledgeBase(KnowledgeBase, PropertyList, Collection) - Method in interface edu.stanford.smi.protege.model.KnowledgeBaseFactory
loadKnowledgeBase(KnowledgeBase, PropertyList, boolean, Collection) - Method in class edu.stanford.smi.protege.storage.clips.ClipsKnowledgeBaseFactory
loadKnowledgeBase(KnowledgeBase, Reader, Reader, boolean, Collection) - Method in class edu.stanford.smi.protege.storage.clips.ClipsKnowledgeBaseFactory
loadKnowledgeBase(KnowledgeBase, String, String, boolean, Collection) - Method in class edu.stanford.smi.protege.storage.clips.ClipsKnowledgeBaseFactory
loadKnowledgeBase(Reader, Reader, Collection) - Method in class edu.stanford.smi.protege.storage.clips.ClipsKnowledgeBaseFactory
loadKnowledgeBase(String, String, Collection) - Method in class edu.stanford.smi.protege.storage.clips.ClipsKnowledgeBaseFactory
loadKnowledgeBase(KnowledgeBase, PropertyList, Collection) - Method in class edu.stanford.smi.protege.storage.database.DatabaseKnowledgeBaseFactory
loadKnowledgeBase(KnowledgeBase, String, String, String, String, String, Collection) - Method in class edu.stanford.smi.protege.storage.database.DatabaseKnowledgeBaseFactory
loadKnowledgeBase(KnowledgeBase, PropertyList, boolean, Collection) - Method in class edu.stanford.smi.protege.storage.xml.XMLKnowledgeBaseFactory
loadKnowledgeBase(KnowledgeBase, BufferedReader, boolean, Collection) - Static method in class edu.stanford.smi.protege.storage.xml.XMLKnowledgeBaseFactory
loadKnowledgeBase(KnowledgeBase, String, boolean, Collection) - Method in class edu.stanford.smi.protege.storage.xml.XMLKnowledgeBaseFactory
loadKnowledgeBase(BufferedReader, Collection) - Method in class edu.stanford.smi.protege.storage.xml.XMLKnowledgeBaseFactory
loadKnowledgeBase(String, Collection) - Method in class edu.stanford.smi.protege.storage.xml.XMLKnowledgeBaseFactory
loadNull() - Method in class edu.stanford.smi.protege.ui.FrameRenderer
loadNull() - Method in class edu.stanford.smi.protege.ui.WidgetClassNameRenderer
loadNull() - Method in class edu.stanford.smi.protege.util.DefaultRenderer
loadPolicy() - Method in class edu.stanford.smi.protege.server.framestore.ReadAccessEnforcementFrameStore
loadPopupMenu(JPopupMenu) - Method in class edu.stanford.smi.protege.ui.ConfigureAction
loadProject(URI) - Method in class edu.stanford.smi.protege.ui.ProjectManager
loadProject(URI, KnowledgeBaseFactory) - Method in class edu.stanford.smi.protege.ui.ProjectManager
loadProjectFromFile(String, Collection) - Static method in class edu.stanford.smi.protege.model.Project
loadProjectFromURI(URI, Collection) - Static method in class edu.stanford.smi.protege.model.Project
loadProjectFromURI(URI, Collection, boolean) - Static method in class edu.stanford.smi.protege.model.Project
loadProjectFromURI(URI, Collection) - Method in class edu.stanford.smi.protege.ui.ProjectManager
loadProjectKB(URI, KnowledgeBaseFactory, Collection) - Static method in class edu.stanford.smi.protege.model.Project
loadProxyClass(String, String[], ClassLoader) - Method in class edu.stanford.smi.protege.server.ProtegeRmiClassLoaderSpi
loadSlot(Slot) - Method in class edu.stanford.smi.protege.ui.FrameRenderer
loadSlot(Slot) - Method in class edu.stanford.smi.protege.ui.SlotHierarchyRenderer
loadTreeColors() - Method in class edu.stanford.smi.protege.util.DefaultRenderer
loadValues() - Method in class edu.stanford.smi.protege.widget.AbstractSlotWidget
LOCAL - Static variable in interface edu.stanford.smi.protege.storage.clips.ParserConstants
  RegularExpression Id.
localCount - Static variable in class edu.stanford.smi.protege.util.IDGenerator
LocaleComparator - Class in edu.stanford.smi.protege.ui
  TODO Class Comment
LocaleComparator() - Constructor for class edu.stanford.smi.protege.ui.LocaleComparator
LocaleRenderer - Class in edu.stanford.smi.protege.ui
  TODO Class Comment
LocaleRenderer() - Constructor for class edu.stanford.smi.protege.ui.LocaleRenderer
Localizable - Interface in edu.stanford.smi.protege.model
  TODO Class Comment
localize(KnowledgeBase) - Method in class edu.stanford.smi.protege.code.generator.wrapping.AbstractWrappedInstance
localize(KnowledgeBase) - Method in class edu.stanford.smi.protege.event.KnowledgeBaseEvent
localize(KnowledgeBase) - Method in class edu.stanford.smi.protege.model.DefaultFrame
localize(KnowledgeBase) - Method in class edu.stanford.smi.protege.model.FrameID
localize(KnowledgeBase) - Method in class edu.stanford.smi.protege.model.framestore.ReferenceImpl
localize(KnowledgeBase) - Method in class edu.stanford.smi.protege.model.framestore.Sft
localize(KnowledgeBase) - Method in interface edu.stanford.smi.protege.model.Localizable
localize(KnowledgeBase) - Method in class edu.stanford.smi.protege.model.query.SynchronizeQueryCallback
localize(KnowledgeBase) - Method in class edu.stanford.smi.protege.server.metaproject.impl.MetaProjectImpl
localize(KnowledgeBase) - Method in class edu.stanford.smi.protege.server.metaproject.impl.PolicyImpl
localize(KnowledgeBase) - Method in class edu.stanford.smi.protege.server.metaproject.impl.UnbackedOperationImpl
localize(KnowledgeBase) - Method in class edu.stanford.smi.protege.server.metaproject.impl.WrappedProtegeInstanceImpl
localize(KnowledgeBase) - Method in enum edu.stanford.smi.protege.server.ServerProject.ProjectStatus
localize(KnowledgeBase) - Method in class edu.stanford.smi.protege.server.update.OntologyUpdate
localize(KnowledgeBase) - Method in class edu.stanford.smi.protege.server.update.RemoteResponse
localize(KnowledgeBase) - Method in class edu.stanford.smi.protege.server.update.ValueUpdate
localize(KnowledgeBase) - Method in class edu.stanford.smi.protege.util.AbstractEvent
localize(KnowledgeBase) - Method in class edu.stanford.smi.protege.util.FrameWithBrowserText
localize(KnowledgeBase) - Method in class edu.stanford.smi.protege.util.GetInstancesAndBrowserTextJob
localize(KnowledgeBase) - Method in class edu.stanford.smi.protege.util.GetOwnSlotValuesBrowserTextJob
localize(Object, KnowledgeBase) - Static method in class edu.stanford.smi.protege.util.LocalizeUtils
localize(KnowledgeBase) - Method in class edu.stanford.smi.protege.util.ProtegeJob
  This call is used to make needed adjustments to objects after they have been serialized and then deserialized.
localize(KnowledgeBase) - Method in enum edu.stanford.smi.protege.util.transaction.TransactionIsolationLevel
LocalizedText - Class in edu.stanford.smi.protege.resource
LocalizedText() - Constructor for class edu.stanford.smi.protege.resource.LocalizedText
LocalizeFrameStoreHandler - Class in edu.stanford.smi.protege.server.framestore
LocalizeFrameStoreHandler(KnowledgeBase) - Constructor for class edu.stanford.smi.protege.server.framestore.LocalizeFrameStoreHandler
localizeStandardLabel(String, String, ResourceKey) - Method in class edu.stanford.smi.protege.widget.AbstractSlotWidget
LocalizeUtils - Class in edu.stanford.smi.protege.util
LocalizeUtils() - Constructor for class edu.stanford.smi.protege.util.LocalizeUtils
LocalProjectAction - Class in edu.stanford.smi.protege.action
LocalProjectAction(ResourceKey) - Constructor for class edu.stanford.smi.protege.action.LocalProjectAction
LocalProjectAction(ResourceKey, boolean) - Constructor for class edu.stanford.smi.protege.action.LocalProjectAction
log - Static variable in class edu.stanford.smi.protege.storage.database.AbstractDatabaseFrameDb
Log - Class in edu.stanford.smi.protege.util
  A utility class that prints trace messages of various sorts to a log.
LOG_DEBUG_PROPERTY - Static variable in class edu.stanford.smi.protege.util.ApplicationProperties
LOG_FILE_PROPERTY - Static variable in class edu.stanford.smi.protege.util.ApplicationProperties
LOGGER - Static variable in class edu.stanford.smi.protege.storage.database.ValueCachingNarrowFrameStore
LOGGER - Static variable in class edu.stanford.smi.protege.util.transaction.cache.impl.ReadCommittedCache
logPacket(byte[]) - Method in class edu.stanford.smi.protege.server.socket.deflate.CompressingInputStream
logPacket(byte[], int) - Method in class edu.stanford.smi.protege.server.socket.deflate.CompressingOutputStream
logRequests() - Method in class edu.stanford.smi.protege.server.framestore.background.FrameCalculator
logSystemInfo() - Static method in class edu.stanford.smi.protege.util.SystemUtilities
LOOK_AND_FEEL - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
LOOK_AND_FEEL - Static variable in class edu.stanford.smi.protege.util.ApplicationProperties
LookAndFeelAction - Class in edu.stanford.smi.protege.action
  Action to change the applications "look and feel" as defined in the swing documentation.
LookAndFeelAction(String, String) - Constructor for class edu.stanford.smi.protege.action.LookAndFeelAction
LookAndFeelUtil - Class in edu.stanford.smi.protege.util
LookAndFeelUtil() - Constructor for class edu.stanford.smi.protege.util.LookAndFeelUtil
lookupActionIcon(ResourceKey, boolean, boolean) - Static method in class edu.stanford.smi.protege.resource.Icons
lookupIcon(ResourceKey) - Static method in class edu.stanford.smi.protege.resource.Icons
LPAREN - Static variable in interface edu.stanford.smi.protege.storage.clips.ParserConstants
  RegularExpression Id.

## M

MacroCommand - Class in edu.stanford.smi.protege.model.framestore.undo
MacroCommand(String, FrameStore) - Constructor for class edu.stanford.smi.protege.model.framestore.undo.MacroCommand
main(String[]) - Static method in class edu.stanford.smi.protege.Applet
main(String[]) - Static method in class edu.stanford.smi.protege.Application
main(String[]) - Static method in class edu.stanford.smi.protege.server.ClientConnectMain
main(String[]) - Static method in class edu.stanford.smi.protege.server.Server
main(String[]) - Static method in class edu.stanford.smi.protege.server.Shutdown
main(String[]) - Static method in enum edu.stanford.smi.protege.storage.database.KnownDatabase
main(String[]) - Static method in class edu.stanford.smi.protege.storage.database.RobustConnection
main(String[]) - Static method in class edu.stanford.smi.protege.widget.ProtegePropertiesTab
MAIN_FRAME_RECTANGLE - Static variable in class edu.stanford.smi.protege.util.ApplicationProperties
makeCompactGrid(Container, int, int, int, int, int, int) - Static method in class edu.stanford.smi.protege.ui.SpringUtilities
  Aligns the first `rows` * `cols` components of `parent` in a grid.
MakeCopiesAction - Class in edu.stanford.smi.protege.action
MakeCopiesAction(ResourceKey, Selectable) - Constructor for class edu.stanford.smi.protege.action.MakeCopiesAction
makeDigest(String) - Static method in class edu.stanford.smi.protege.util.StringUtilities
makeDigest(String, String) - Static method in class edu.stanford.smi.protege.util.StringUtilities
makeGrid(Container, int, int, int, int, int, int) - Static method in class edu.stanford.smi.protege.ui.SpringUtilities
  Aligns the first `rows` * `cols` components of `parent` in a grid.
makeInheritedLoggersLocal(Logger) - Static method in class edu.stanford.smi.protege.util.Log
makeInstanceScrollPane() - Method in class edu.stanford.smi.protege.ui.InstanceDisplay
makeList() - Method in class edu.stanford.smi.protege.util.ConcurrentListModel
makeList() - Method in class edu.stanford.smi.protege.util.SimpleListModel
makeTempFilePermanent(File) - Method in class edu.stanford.smi.protege.model.AbstractKnowledgeBaseFactory
makeTempFilePermanent(File) - Static method in class edu.stanford.smi.protege.util.FileUtilities
ManageIncludedProjectsAction - Class in edu.stanford.smi.protege.action
  TODO Class Comment
ManageIncludedProjectsAction() - Constructor for class edu.stanford.smi.protege.action.ManageIncludedProjectsAction
markClean() - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
markDeleted(boolean) - Method in class edu.stanford.smi.protege.model.DefaultFrame
markDeleted(boolean) - Method in interface edu.stanford.smi.protege.model.Frame
markDeleting() - Method in class edu.stanford.smi.protege.model.DefaultFrame
markDeleting() - Method in interface edu.stanford.smi.protege.model.Frame
markDirty(boolean) - Method in class edu.stanford.smi.protege.widget.TextComponentWidget
MATCHES_STRING - Static variable in interface edu.stanford.smi.protege.model.query.Query
MAX_WORKINFO_QUEUE - Static variable in class edu.stanford.smi.protege.server.framestore.background.FrameCalculator
MAXIMUM_CARDINALITY - Static variable in interface edu.stanford.smi.protege.model.Model.Facet
MAXIMUM_CARDINALITY - Static variable in interface edu.stanford.smi.protege.model.Model.FacetID
MAXIMUM_CARDINALITY - Static variable in interface edu.stanford.smi.protege.model.Model.Slot
MAXIMUM_CARDINALITY - Static variable in interface edu.stanford.smi.protege.model.Model.SlotID
MAXIMUM_CARDINALITY_UNBOUNDED - Static variable in interface edu.stanford.smi.protege.model.KnowledgeBase
MaximumCardinalityConstraint - Class in edu.stanford.smi.protege.model
  Constraint on the maximum number of values that a slot may have.
MaximumCardinalityConstraint() - Constructor for class edu.stanford.smi.protege.model.MaximumCardinalityConstraint
MaximumCardinalityWidget - Class in edu.stanford.smi.protege.widget
  Slow widget for acquiring the maximum cardinality for a slot.
MaximumCardinalityWidget() - Constructor for class edu.stanford.smi.protege.widget.MaximumCardinalityWidget
maximumLayoutSize(Container) - Method in class edu.stanford.smi.protege.util.ResizingLayout
maxNextCharInd - Variable in class edu.stanford.smi.protege.storage.clips.SimpleCharStream
MENUBAR_EDIT - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
MENUBAR_FILE - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
MENUBAR_HELP - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
MENUBAR_PROJECT - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
MENUBAR_WINDOW - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
MergeIncludedProjects - Class in edu.stanford.smi.protege.action
  This action removes the "inclusion" flag from all frames.
MergeIncludedProjects() - Constructor for class edu.stanford.smi.protege.action.MergeIncludedProjects
mergeIncludedProjects() - Method in class edu.stanford.smi.protege.model.Project
mergeIncludedProjectsRequest() - Method in class edu.stanford.smi.protege.ui.ProjectManager
MergingNarrowFrameStore - Class in edu.stanford.smi.protege.model.framestore
  All queries go to all frame stores.
MergingNarrowFrameStore(Object) - Constructor for class edu.stanford.smi.protege.model.framestore.MergingNarrowFrameStore
MessageError - Class in edu.stanford.smi.protege.util
  Class used for reporting errors at project load time.
MessageError(String) - Constructor for class edu.stanford.smi.protege.util.MessageError
MessageError(Throwable) - Constructor for class edu.stanford.smi.protege.util.MessageError
MessageError(Throwable, String) - Constructor for class edu.stanford.smi.protege.util.MessageError
MessageError(Throwable, String, MessageError.Severity) - Constructor for class edu.stanford.smi.protege.util.MessageError
MessageError.Severity - Enum in edu.stanford.smi.protege.util
MessagePanel - Class in edu.stanford.smi.protege.util
  Displays a possibly multiline message.
MessagePanel(String) - Constructor for class edu.stanford.smi.protege.util.MessagePanel
MetaProject - Interface in edu.stanford.smi.protege.server.metaproject
METAPROJECT_LAST_ACCESS_TIME_UPDATE_FREQUENCY - Static variable in class edu.stanford.smi.protege.server.ServerProperties
MetaProjectConstants - Class in edu.stanford.smi.protege.server.metaproject
MetaProjectConstants() - Constructor for class edu.stanford.smi.protege.server.metaproject.MetaProjectConstants
MetaProjectImpl - Class in edu.stanford.smi.protege.server.metaproject.impl
MetaProjectImpl(URI) - Constructor for class edu.stanford.smi.protege.server.metaproject.impl.MetaProjectImpl
MetaProjectImpl(URI, boolean) - Constructor for class edu.stanford.smi.protege.server.metaproject.impl.MetaProjectImpl
MetaProjectImpl(Project) - Constructor for class edu.stanford.smi.protege.server.metaproject.impl.MetaProjectImpl
MetaProjectImpl.ClsEnum - Enum in edu.stanford.smi.protege.server.metaproject.impl
MetaProjectImpl.InstanceEnum - Enum in edu.stanford.smi.protege.server.metaproject.impl
MetaProjectImpl.SlotEnum - Enum in edu.stanford.smi.protege.server.metaproject.impl
MetaprojectPanel - Class in edu.stanford.smi.protege.server.admin
MetaprojectPanel(RemoteServer, RemoteSession) - Constructor for class edu.stanford.smi.protege.server.admin.MetaprojectPanel
METRICS_DIALOG_TITLE - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
MetricsPanel - Class in edu.stanford.smi.protege.ui
  Panel to display a set of metrics that describe a project.
MetricsPanel(Project) - Constructor for class edu.stanford.smi.protege.ui.MetricsPanel
MINIMUM_CARDINALITY - Static variable in interface edu.stanford.smi.protege.model.Model.Facet
MINIMUM_CARDINALITY - Static variable in interface edu.stanford.smi.protege.model.Model.FacetID
MINIMUM_CARDINALITY - Static variable in interface edu.stanford.smi.protege.model.Model.Slot
MINIMUM_CARDINALITY - Static variable in interface edu.stanford.smi.protege.model.Model.SlotID
MINIMUM_CARDINALITY_SLOT_WIDGET_LABEL - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
MinimumCardinalityConstraint - Class in edu.stanford.smi.protege.model
  A constraint on the minimum number of values that a slot may contain.
MinimumCardinalityConstraint() - Constructor for class edu.stanford.smi.protege.model.MinimumCardinalityConstraint
MinimumCardinalityWidget - Class in edu.stanford.smi.protege.widget
  Slow widget for acquiring the minimum cardinality for a slot.
MinimumCardinalityWidget() - Constructor for class edu.stanford.smi.protege.widget.MinimumCardinalityWidget
minimumLayoutSize(Container) - Method in class edu.stanford.smi.protege.util.ResizingLayout
MissingFrameException - Exception in edu.stanford.smi.protege.model
  Exception thrown when a frame is passed in as a parameter to a Knowledge base method and that frame is not a member of the knowledge base.
MissingFrameException(String) - Constructor for exception edu.stanford.smi.protege.model.MissingFrameException
  DeletedFrameException constructor comment.
ModalDialog - Class in edu.stanford.smi.protege.util
  A class to handle all modal dialog processing.
ModalDialog.CloseCallback - Interface in edu.stanford.smi.protege.util
ModalDialogCloseDoubleClickAdapter - Class in edu.stanford.smi.protege.util
  An adapter that causes the raw "mouse clicked" event to fire a double click event.
ModalDialogCloseDoubleClickAdapter() - Constructor for class edu.stanford.smi.protege.util.ModalDialogCloseDoubleClickAdapter
modalDialogInDropWorks() - Static method in class edu.stanford.smi.protege.util.SystemUtilities
MODE_CLOSE - Static variable in class edu.stanford.smi.protege.util.ModalDialog
MODE_OK_CANCEL - Static variable in class edu.stanford.smi.protege.util.ModalDialog
MODE_YES_NO - Static variable in class edu.stanford.smi.protege.util.ModalDialog
MODE_YES_NO_CANCEL - Static variable in class edu.stanford.smi.protege.util.ModalDialog
Model - Interface in edu.stanford.smi.protege.model
  System Class, Slot and Facet names and ids
Model.Cls - Interface in edu.stanford.smi.protege.model
  system class names
Model.ClsID - Interface in edu.stanford.smi.protege.model
  System class frame ids, one for each name.
Model.Facet - Interface in edu.stanford.smi.protege.model
  system facet names
Model.FacetID - Interface in edu.stanford.smi.protege.model
  system facet frame ids.
Model.Slot - Interface in edu.stanford.smi.protege.model
  System slot names
Model.SlotID - Interface in edu.stanford.smi.protege.model
  FrameID's for system slots
ModelUtilities - Class in edu.stanford.smi.protege.model
  Convenience utilities for dealing with the Knowledge Base.
ModelUtilities() - Constructor for class edu.stanford.smi.protege.model.ModelUtilities
MODIFICATION_TIMESTAMP - Static variable in interface edu.stanford.smi.protege.model.Model.Facet
MODIFICATION_TIMESTAMP - Static variable in interface edu.stanford.smi.protege.model.Model.FacetID
MODIFICATION_TIMESTAMP - Static variable in interface edu.stanford.smi.protege.model.Model.Slot
MODIFICATION_TIMESTAMP - Static variable in interface edu.stanford.smi.protege.model.Model.SlotID
ModificationException - Exception in edu.stanford.smi.protege.exception
ModificationException(String) - Constructor for exception edu.stanford.smi.protege.exception.ModificationException
ModificationFrameStore - Class in edu.stanford.smi.protege.model.framestore
ModificationFrameStore() - Constructor for class edu.stanford.smi.protege.model.framestore.ModificationFrameStore
ModificationRecordFrameStore - Class in edu.stanford.smi.protege.model.framestore
ModificationRecordFrameStore() - Constructor for class edu.stanford.smi.protege.model.framestore.ModificationRecordFrameStore
MODIFIER - Static variable in interface edu.stanford.smi.protege.model.Model.Facet
MODIFIER - Static variable in interface edu.stanford.smi.protege.model.Model.FacetID
MODIFIER - Static variable in interface edu.stanford.smi.protege.model.Model.Slot
MODIFIER - Static variable in interface edu.stanford.smi.protege.model.Model.SlotID
modifyCache(RemoteSession, Sft) - Method in class edu.stanford.smi.protege.server.update.DeferredOperationCache
modifyCache(RemoteSession, Sft, List) - Method in class edu.stanford.smi.protege.server.update.DeferredOperationCache
modifyCache(S, V) - Method in interface edu.stanford.smi.protege.util.transaction.cache.Cache
  This notifies the cache, that the caller has made a change to the value of the var.
modifyCache(S, V, R) - Method in interface edu.stanford.smi.protege.util.transaction.cache.Cache
  This notifies the cache that the caller has made a change to the value of var and that the caller knows the new value is value.
modifyCache(S, V) - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.BasicCache
modifyCache(S, V, R) - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.BasicCache
modifyCache(S, V) - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.CompleteableCache
modifyCache(S, V, R) - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.CompleteableCache
modifyCache(S, V) - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.InvalidatableCache
modifyCache(S, V, R) - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.InvalidatableCache
modifyCache(S, V) - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.ReadCommittedCache
modifyCache(S, V, R) - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.ReadCommittedCache
modifyCache(S, V) - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.ReadUncommittedCache
modifyCache(S, V, R) - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.ReadUncommittedCache
modifyCache(S, V) - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.RepeatableReadCache
modifyCache(S, V, R) - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.RepeatableReadCache
modifyLabelFont(JLabel, int, int) - Static method in class edu.stanford.smi.protege.util.ComponentUtilities
MonitoringAspect - Class in edu.stanford.smi.protege.server.socket
MonitoringAspect(SocketAspect) - Constructor for class edu.stanford.smi.protege.server.socket.MonitoringAspect
MonitoringInputStream - Class in edu.stanford.smi.protege.server.socket
MonitoringInputStream(InputStream) - Constructor for class edu.stanford.smi.protege.server.socket.MonitoringInputStream
MonitoringOutputStream - Class in edu.stanford.smi.protege.server.socket
MonitoringOutputStream(OutputStream) - Constructor for class edu.stanford.smi.protege.server.socket.MonitoringOutputStream
mouseClicked(MouseEvent) - Method in class edu.stanford.smi.protege.util.DoubleClickActionAdapter
mouseClicked(MouseEvent) - Method in class edu.stanford.smi.protege.util.DoubleClickAdapter
mouseClicked(MouseEvent) - Method in class edu.stanford.smi.protege.util.PopupMenuMouseListener
mouseDraggedOnWidget(Component, Point) - Method in class edu.stanford.smi.protege.widget.FormWidget
mouseMovedOnWidget(Component, Point) - Method in class edu.stanford.smi.protege.widget.FormWidget
mousePressed(MouseEvent) - Method in class edu.stanford.smi.protege.util.PopupMenuMouseListener
mouseReleased(MouseEvent) - Method in class edu.stanford.smi.protege.util.PopupMenuMouseListener
moveDirectOwnSlotValue(Slot, int, int) - Method in class edu.stanford.smi.protege.model.DefaultFrame
moveDirectOwnSlotValue(Frame, Slot, int, int) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
moveDirectOwnSlotValue(Slot, int, int) - Method in interface edu.stanford.smi.protege.model.Frame
moveDirectOwnSlotValue(Frame, Slot, int, int) - Method in class edu.stanford.smi.protege.model.framestore.ArgumentCheckingFrameStore
moveDirectOwnSlotValue(Frame, Slot, int, int) - Method in class edu.stanford.smi.protege.model.framestore.ChangeMonitorFrameStore
moveDirectOwnSlotValue(Frame, Slot, int, int) - Method in class edu.stanford.smi.protege.model.framestore.EventDispatchFrameStore
moveDirectOwnSlotValue(Frame, Slot, int, int) - Method in class edu.stanford.smi.protege.model.framestore.EventGeneratorFrameStore
moveDirectOwnSlotValue(Frame, Slot, int, int) - Method in interface edu.stanford.smi.protege.model.framestore.FrameStore
moveDirectOwnSlotValue(Frame, Slot, int, int) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreAdapter
moveDirectOwnSlotValue(Frame, Slot, int, int) - Method in class edu.stanford.smi.protege.model.framestore.ModificationRecordFrameStore
moveDirectOwnSlotValue(Frame, Slot, int, int) - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
moveDirectOwnSlotValue(Frame, Slot, int, int) - Method in class edu.stanford.smi.protege.model.framestore.TemplateFrameStore
moveDirectOwnSlotValue(Frame, Slot, int, int) - Method in class edu.stanford.smi.protege.model.framestore.undo.UndoFrameStore
moveDirectOwnSlotValue(Frame, Slot, int, int) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
moveDirectOwnSlotValue(Frame, Slot, int, int) - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
moveDirectOwnSlotValue(Frame, Slot, int, int, RemoteSession) - Method in interface edu.stanford.smi.protege.server.framestore.RemoteServerFrameStore
moveDirectOwnSlotValue(Frame, Slot, int, int, RemoteSession) - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
moveDirectSubclass(Cls, Cls) - Method in interface edu.stanford.smi.protege.model.Cls
  Reorder the subclasses, moving `movedSubclass` so that it appears after `afterCls` .
moveDirectSubclass(Cls, Cls) - Method in class edu.stanford.smi.protege.model.DefaultCls
moveDirectSubclass(Cls, Cls, Cls) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
moveDirectSubclass(Cls, Cls, int) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
moveDirectSubclass(Cls, Cls, int) - Method in class edu.stanford.smi.protege.model.framestore.ArgumentCheckingFrameStore
moveDirectSubclass(Cls, Cls, int) - Method in class edu.stanford.smi.protege.model.framestore.ChangeMonitorFrameStore
moveDirectSubclass(Cls, Cls, int) - Method in class edu.stanford.smi.protege.model.framestore.EventDispatchFrameStore
moveDirectSubclass(Cls, Cls, int) - Method in class edu.stanford.smi.protege.model.framestore.EventGeneratorFrameStore
moveDirectSubclass(Cls, Cls, int) - Method in interface edu.stanford.smi.protege.model.framestore.FrameStore
moveDirectSubclass(Cls, Cls, int) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreAdapter
moveDirectSubclass(Cls, Cls, int) - Method in class edu.stanford.smi.protege.model.framestore.ModificationRecordFrameStore
moveDirectSubclass(Cls, Cls, int) - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
moveDirectSubclass(Cls, Cls, int) - Method in class edu.stanford.smi.protege.model.framestore.TemplateFrameStore
moveDirectSubclass(Cls, Cls, int) - Method in class edu.stanford.smi.protege.model.framestore.undo.UndoFrameStore
moveDirectSubclass(Cls, Cls, Cls) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
moveDirectSubclass(Cls, Cls, int) - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
moveDirectSubclass(Cls, Cls, int, RemoteSession) - Method in interface edu.stanford.smi.protege.server.framestore.RemoteServerFrameStore
moveDirectSubclass(Cls, Cls, int, RemoteSession) - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
moveDirectSubslot(Slot, Slot, Slot) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
moveDirectSubslot(Slot, Slot, int) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
moveDirectSubslot(Slot, Slot) - Method in class edu.stanford.smi.protege.model.DefaultSlot
moveDirectSubslot(Slot, Slot, int) - Method in class edu.stanford.smi.protege.model.framestore.ArgumentCheckingFrameStore
moveDirectSubslot(Slot, Slot, int) - Method in class edu.stanford.smi.protege.model.framestore.ChangeMonitorFrameStore
moveDirectSubslot(Slot, Slot, int) - Method in class edu.stanford.smi.protege.model.framestore.EventDispatchFrameStore
moveDirectSubslot(Slot, Slot, int) - Method in class edu.stanford.smi.protege.model.framestore.EventGeneratorFrameStore
moveDirectSubslot(Slot, Slot, int) - Method in interface edu.stanford.smi.protege.model.framestore.FrameStore
moveDirectSubslot(Slot, Slot, int) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreAdapter
moveDirectSubslot(Slot, Slot, int) - Method in class edu.stanford.smi.protege.model.framestore.ModificationRecordFrameStore
moveDirectSubslot(Slot, Slot, int) - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
moveDirectSubslot(Slot, Slot, int) - Method in class edu.stanford.smi.protege.model.framestore.TemplateFrameStore
moveDirectSubslot(Slot, Slot, int) - Method in class edu.stanford.smi.protege.model.framestore.undo.UndoFrameStore
moveDirectSubslot(Slot, Slot, Slot) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
moveDirectSubslot(Slot, Slot) - Method in interface edu.stanford.smi.protege.model.Slot
moveDirectSubslot(Slot, Slot, int) - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
moveDirectSubslot(Slot, Slot, int, RemoteSession) - Method in interface edu.stanford.smi.protege.server.framestore.RemoteServerFrameStore
moveDirectSubslot(Slot, Slot, int, RemoteSession) - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
moveDirectTemplateSlot(Slot, int) - Method in interface edu.stanford.smi.protege.model.Cls
moveDirectTemplateSlot(Slot, int) - Method in class edu.stanford.smi.protege.model.DefaultCls
moveDirectTemplateSlot(Cls, Slot, int) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
moveDirectTemplateSlot(Cls, Slot, int) - Method in class edu.stanford.smi.protege.model.framestore.ArgumentCheckingFrameStore
moveDirectTemplateSlot(Cls, Slot, int) - Method in class edu.stanford.smi.protege.model.framestore.ChangeMonitorFrameStore
moveDirectTemplateSlot(Cls, Slot, int) - Method in class edu.stanford.smi.protege.model.framestore.EventDispatchFrameStore
moveDirectTemplateSlot(Cls, Slot, int) - Method in class edu.stanford.smi.protege.model.framestore.EventGeneratorFrameStore
moveDirectTemplateSlot(Cls, Slot, int) - Method in interface edu.stanford.smi.protege.model.framestore.FrameStore
moveDirectTemplateSlot(Cls, Slot, int) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreAdapter
moveDirectTemplateSlot(Cls, Slot, int) - Method in class edu.stanford.smi.protege.model.framestore.ModificationRecordFrameStore
moveDirectTemplateSlot(Cls, Slot, int) - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
moveDirectTemplateSlot(Cls, Slot, int) - Method in class edu.stanford.smi.protege.model.framestore.TemplateFrameStore
moveDirectTemplateSlot(Cls, Slot, int) - Method in class edu.stanford.smi.protege.model.framestore.undo.UndoFrameStore
moveDirectTemplateSlot(Cls, Slot, int) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
moveDirectTemplateSlot(Cls, Slot, int) - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
moveDirectTemplateSlot(Cls, Slot, int, RemoteSession) - Method in interface edu.stanford.smi.protege.server.framestore.RemoteServerFrameStore
moveDirectTemplateSlot(Cls, Slot, int, RemoteSession) - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
moveDirectType(Cls, int) - Method in class edu.stanford.smi.protege.model.DefaultInstance
moveDirectType(Instance, Cls, int) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
moveDirectType(Instance, Cls, int) - Method in class edu.stanford.smi.protege.model.framestore.ArgumentCheckingFrameStore
moveDirectType(Instance, Cls, int) - Method in class edu.stanford.smi.protege.model.framestore.ChangeMonitorFrameStore
moveDirectType(Instance, Cls, int) - Method in class edu.stanford.smi.protege.model.framestore.EventDispatchFrameStore
moveDirectType(Instance, Cls, int) - Method in class edu.stanford.smi.protege.model.framestore.EventGeneratorFrameStore
moveDirectType(Instance, Cls, int) - Method in interface edu.stanford.smi.protege.model.framestore.FrameStore
moveDirectType(Instance, Cls, int) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreAdapter
moveDirectType(Instance, Cls, int) - Method in class edu.stanford.smi.protege.model.framestore.ModificationRecordFrameStore
moveDirectType(Instance, Cls, int) - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
moveDirectType(Instance, Cls, int) - Method in class edu.stanford.smi.protege.model.framestore.TemplateFrameStore
moveDirectType(Instance, Cls, int) - Method in class edu.stanford.smi.protege.model.framestore.undo.UndoFrameStore
moveDirectType(Cls, int) - Method in interface edu.stanford.smi.protege.model.Instance
moveDirectType(Instance, Cls, int) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
moveDirectType(Instance, Cls, int) - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
moveDirectType(Instance, Cls, int, RemoteSession) - Method in interface edu.stanford.smi.protege.server.framestore.RemoteServerFrameStore
moveDirectType(Instance, Cls, int, RemoteSession) - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
moveValue(Frame, Slot, Facet, boolean, int, int) - Method in class edu.stanford.smi.protege.model.framestore.ClosureCachingBasicFrameStore
moveValue(Frame, Slot, Facet, boolean, int, int) - Method in class edu.stanford.smi.protege.model.framestore.ImmutableNamesNarrowFrameStore
moveValue(Frame, Slot, Facet, boolean, int, int) - Method in class edu.stanford.smi.protege.model.framestore.InMemoryFrameDb
moveValue(Frame, Slot, Facet, boolean, int, int) - Method in class edu.stanford.smi.protege.model.framestore.MergingNarrowFrameStore
moveValue(Frame, Slot, Facet, boolean, int, int) - Method in interface edu.stanford.smi.protege.model.framestore.NarrowFrameStore
  Retrieves the list of values associated with the (frame, slot, facet, isTemplate) combination and moves the item at the position from to the position to.
moveValue(Frame, Slot, Facet, boolean, int, int) - Method in class edu.stanford.smi.protege.model.framestore.PlaceHolderNarrowFrameStore
moveValue(int, int) - Method in class edu.stanford.smi.protege.model.framestore.Record
moveValue(Frame, Slot, Facet, boolean, int, int) - Method in interface edu.stanford.smi.protege.model.Storage
moveValue(Frame, Slot, Facet, boolean, int, int, RemoteSession) - Method in interface edu.stanford.smi.protege.server.narrowframestore.RemoteServerNarrowFrameStore
moveValue(Frame, Slot, Facet, boolean, int, int, RemoteSession) - Method in class edu.stanford.smi.protege.server.narrowframestore.ServerNarrowFrameStore
moveValue(Frame, Slot, Facet, boolean, int, int) - Method in class edu.stanford.smi.protege.storage.database.DefaultDatabaseFrameDb
moveValue(Frame, Slot, Facet, boolean, int, int) - Method in class edu.stanford.smi.protege.storage.database.IdleConnectionNarrowFrameStore
moveValue(Frame, Slot, Facet, boolean, int, int) - Method in class edu.stanford.smi.protege.storage.database.ValueCachingNarrowFrameStore
moveValue(int, int) - Method in class edu.stanford.smi.protege.util.SimpleListModel
MRU_PROJECTS - Static variable in class edu.stanford.smi.protege.util.ApplicationProperties
MultiMap<X,Y> - Class in edu.stanford.smi.protege.util
  Abstract implementation of a "multimap" (a map from a key to a collection of values).
MultiMap() - Constructor for class edu.stanford.smi.protege.util.MultiMap
MultiMap(int) - Constructor for class edu.stanford.smi.protege.util.MultiMap
MULTIPLE_LABEL - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
MultiplexingClassLoader - Class in edu.stanford.smi.protege.util
MultiplexingClassLoader(Collection) - Constructor for class edu.stanford.smi.protege.util.MultiplexingClassLoader
MULTISLOT - Static variable in interface edu.stanford.smi.protege.storage.clips.ParserConstants
  RegularExpression Id.
MultiSlotPanel - Class in edu.stanford.smi.protege.ui
MutableSelectable - Interface in edu.stanford.smi.protege.util

## N

NAME - Static variable in interface edu.stanford.smi.protege.model.Model.Slot
NAME - Static variable in interface edu.stanford.smi.protege.model.Model.SlotID
NAME - Static variable in interface edu.stanford.smi.protege.storage.xml.XMLString.ElementName
NAME_CHANGED - Static variable in class edu.stanford.smi.protege.event.FrameEvent
  Deprecated.
NAME_SLOT_WIDGET_LABEL - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
nameChanged(FrameEvent) - Method in class edu.stanford.smi.protege.event.FrameAdapter
  Deprecated. Override frameReplaced instead.
nameChanged(FrameEvent) - Method in interface edu.stanford.smi.protege.event.FrameListener
  This routine should be called replaceFrame but for backwards compatibility reasons we cannot change this.
NAMESPACE - Static variable in interface edu.stanford.smi.protege.storage.xml.XMLString
NarrowFrameStore - Interface in edu.stanford.smi.protege.model.framestore
needsPrimitiveMethod() - Method in class edu.stanford.smi.protege.code.generator.wrapping.SlotAtClassCode
newButton_actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protege.ui.WelcomeDialog
newFrameStore() - Method in class edu.stanford.smi.protege.server.framestore.LocalizeFrameStoreHandler
newInstance(Class) - Static method in class edu.stanford.smi.protege.model.framestore.AbstractFrameStoreInvocationHandler
newInstance(Class, KnowledgeBase) - Static method in class edu.stanford.smi.protege.model.framestore.AbstractFrameStoreInvocationHandler
newInstance(Class, Class[], Object[]) - Static method in class edu.stanford.smi.protege.util.SystemUtilities
newInstance(String) - Static method in class edu.stanford.smi.protege.util.SystemUtilities
newInstance(Class) - Static method in class edu.stanford.smi.protege.util.SystemUtilities
newProjectRequest() - Method in class edu.stanford.smi.protege.ui.ProjectManager
newToken(int, String) - Static method in class edu.stanford.smi.protege.storage.clips.Token
  Returns a new Token object, by default.
newToken(int) - Static method in class edu.stanford.smi.protege.storage.clips.Token
next - Variable in class edu.stanford.smi.protege.storage.clips.Token
  A reference to the next regular (non-special) token from the input stream.
NEXT_FRAME_NUMBER - Static variable in class edu.stanford.smi.protege.util.ApplicationProperties
nextState(ServerCachedState, Frame, Slot, Frame) - Method in interface edu.stanford.smi.protege.server.framestore.background.ServerCacheStateMachine
NO_BUTTON_LABEL - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
NO_INHERIT - Static variable in interface edu.stanford.smi.protege.storage.clips.ParserConstants
  RegularExpression Id.
NO_SAVE - Static variable in class edu.stanford.smi.protege.server.Server
NON_REACTIVE - Static variable in interface edu.stanford.smi.protege.storage.clips.ParserConstants
  RegularExpression Id.
NONE - Static variable in class edu.stanford.smi.protege.ui.WidgetClassNameRenderer
NONE - Static variable in class edu.stanford.smi.protege.widget.ComboBoxWidget
normalize(URI) - Static method in class edu.stanford.smi.protege.util.URIUtilities
NOT_SAME_VALUES - Static variable in interface edu.stanford.smi.protege.model.Model.Facet
NOT_SAME_VALUES - Static variable in interface edu.stanford.smi.protege.model.Model.FacetID
NOT_SAME_VALUES - Static variable in interface edu.stanford.smi.protege.model.Model.Slot
NOT_SAME_VALUES - Static variable in interface edu.stanford.smi.protege.model.Model.SlotID
NOTE - Static variable in interface edu.stanford.smi.protege.storage.clips.ParserConstants
  RegularExpression Id.
notifyChanged(WizardPage) - Method in class edu.stanford.smi.protege.util.Wizard
notifyChildNodeAdded(LazyTreeNode, int, LazyTreeNode) - Method in class edu.stanford.smi.protege.util.LazyTreeNode
notifyChildNodeAdded(LazyTreeNode, int, LazyTreeNode) - Method in class edu.stanford.smi.protege.util.LazyTreeRoot
notifyChildNodeRemoved(LazyTreeNode, int, LazyTreeNode) - Method in class edu.stanford.smi.protege.util.LazyTreeNode
notifyChildNodeRemoved(LazyTreeNode, int, LazyTreeNode) - Method in class edu.stanford.smi.protege.util.LazyTreeRoot
notifyInstancesOfBrowserTextChange(Cls) - Method in class edu.stanford.smi.protege.model.framestore.EventDispatchFrameStore
notifyInstancesOfBrowserTextChange(Cls) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreManager
notifyNodeChanged() - Method in class edu.stanford.smi.protege.ui.ParentChildNode
notifyNodeChanged() - Method in class edu.stanford.smi.protege.ui.ReferenceNode
notifyNodeChanged() - Method in class edu.stanford.smi.protege.ui.SlotSubslotNode
notifyNodeChanged(LazyTreeNode) - Method in class edu.stanford.smi.protege.util.LazyTreeNode
notifyNodeChanged(LazyTreeNode) - Method in class edu.stanford.smi.protege.util.LazyTreeRoot
notifyNodeStructureChanged(LazyTreeNode) - Method in class edu.stanford.smi.protege.util.LazyTreeNode
notifyNodeStructureChanged(LazyTreeNode) - Method in class edu.stanford.smi.protege.util.LazyTreeRoot
notifyProject(String, String, RemoteSession) - Method in interface edu.stanford.smi.protege.server.RemoteServer
notifyProject(String, String, RemoteSession) - Method in class edu.stanford.smi.protege.server.Server
notifySelectionListeners() - Method in class edu.stanford.smi.protege.util.AbstractSelectableComponent
notifySelectionListeners() - Method in interface edu.stanford.smi.protege.util.Selectable
notifySelectionListeners() - Method in class edu.stanford.smi.protege.util.SelectableContainer
notifySelectionListeners() - Method in class edu.stanford.smi.protege.util.SelectableList
notifySelectionListeners() - Method in class edu.stanford.smi.protege.util.SelectableTable
notifySelectionListeners() - Method in class edu.stanford.smi.protege.util.SelectableTree
notifySelectionListeners() - Method in class edu.stanford.smi.protege.widget.AbstractWidget
notifyVisibilityChanged(Frame) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
  TODO implement notifyVisibilityChanged
notifyVisibilityChanged(Frame) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
now() - Static method in class edu.stanford.smi.protege.util.StandardDateFormat
NULL_FRAME_ID_STRING - Static variable in class edu.stanford.smi.protege.storage.database.DatabaseUtils
NullFrameException - Exception in edu.stanford.smi.protege.model
  An exception thrown when an api user passes in a null when an api method was expecting a frame.
NullFrameException(String) - Constructor for exception edu.stanford.smi.protege.model.NullFrameException
NumberFieldWidget - Class in edu.stanford.smi.protege.widget
  A base class for slot widget for acquiring integers or floating point numbers.
NumberFieldWidget() - Constructor for class edu.stanford.smi.protege.widget.NumberFieldWidget
NumberValidator - Interface in edu.stanford.smi.protege.util
  Interface to convert a string to a number.
NUMERIC_MAXIMUM - Static variable in interface edu.stanford.smi.protege.model.Model.Facet
NUMERIC_MAXIMUM - Static variable in interface edu.stanford.smi.protege.model.Model.FacetID
NUMERIC_MAXIMUM - Static variable in interface edu.stanford.smi.protege.model.Model.Slot
NUMERIC_MAXIMUM - Static variable in interface edu.stanford.smi.protege.model.Model.SlotID
NUMERIC_MAXIMUM_SLOT_WIDGET_LABEL - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
NUMERIC_MINIMUM - Static variable in interface edu.stanford.smi.protege.model.Model.Facet
NUMERIC_MINIMUM - Static variable in interface edu.stanford.smi.protege.model.Model.FacetID
NUMERIC_MINIMUM - Static variable in interface edu.stanford.smi.protege.model.Model.Slot
NUMERIC_MINIMUM - Static variable in interface edu.stanford.smi.protege.model.Model.SlotID
NUMERIC_MINIMUM_SLOT_WIDGET_LABEL - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
NumericMaximumConstraint - Class in edu.stanford.smi.protege.model
  Constraint on the maximum value of a slot.
NumericMaximumConstraint() - Constructor for class edu.stanford.smi.protege.model.NumericMaximumConstraint
NumericMaximumWidget - Class in edu.stanford.smi.protege.widget
  A slot widget for acquiring the maximum value for both integer and floating point slots.
NumericMaximumWidget() - Constructor for class edu.stanford.smi.protege.widget.NumericMaximumWidget
NumericMinimumConstraint - Class in edu.stanford.smi.protege.model
  Constraint on the minimum value of a slot.
NumericMinimumConstraint() - Constructor for class edu.stanford.smi.protege.model.NumericMinimumConstraint
NumericMinimumWidget - Class in edu.stanford.smi.protege.widget
  A slot widget for acquiring the minimum value for both integer and floating point slots.
NumericMinimumWidget() - Constructor for class edu.stanford.smi.protege.widget.NumericMinimumWidget

## O

OF - Static variable in interface edu.stanford.smi.protege.storage.clips.ParserConstants
  RegularExpression Id.
offset - Variable in class edu.stanford.smi.protege.server.socket.deflate.CompressingInputStream
offset - Variable in class edu.stanford.smi.protege.server.socket.deflate.CompressingOutputStream
ok() - Method in class edu.stanford.smi.protege.code.generator.wrapping.JavaCodeGeneratorPanel
OK_BUTTON_LABEL - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
OLD_PROPERTY_LONGVARCHAR_TYPE_NAME - Static variable in class edu.stanford.smi.protege.storage.database.RobustConnection
oldStuff() - Method in class edu.stanford.smi.protege.storage.clips.Parser
onAboutToDelete(Object) - Method in class edu.stanford.smi.protege.action.DeleteInstancesAction
onAdd() - Method in class edu.stanford.smi.protege.util.AddAction
onAfterDelete(Object) - Method in class edu.stanford.smi.protege.action.DeleteInstancesAction
onCancel() - Method in class edu.stanford.smi.protege.util.Wizard
onCancel() - Method in class edu.stanford.smi.protege.util.WizardPage
onCommit() - Method in class edu.stanford.smi.protege.widget.ImageWidget
onCommit() - Method in class edu.stanford.smi.protege.widget.TextComponentWidget
onCommit() - Method in class edu.stanford.smi.protege.widget.URLWidget
onCopy() - Method in class edu.stanford.smi.protege.action.MakeCopiesAction
onCreate() - Method in class edu.stanford.smi.protege.util.CreateAction
onDelete(Object) - Method in class edu.stanford.smi.protege.action.DeleteInstancesAction
onDelete() - Method in class edu.stanford.smi.protege.util.DeleteAction
onDelete(Collection) - Method in class edu.stanford.smi.protege.util.DeleteAction
onDelete(Object) - Method in class edu.stanford.smi.protege.util.DeleteAction
onDirectTypeAdded(Cls) - Method in class edu.stanford.smi.protege.ui.InstanceDisplay
onDirectTypeRemoved(Cls) - Method in class edu.stanford.smi.protege.ui.InstanceDisplay
onDoubleClick(Object) - Method in interface edu.stanford.smi.protege.util.DoubleClickListener
  called when an item is double-clicked.
onDoubleClick(Object) - Method in class edu.stanford.smi.protege.util.ModalDialogCloseDoubleClickAdapter
onEditText() - Method in class edu.stanford.smi.protege.ui.ExportConfigurationPanel
onFileChosen(File) - Method in class edu.stanford.smi.protege.action.BrowseForFile
onFinish() - Method in class edu.stanford.smi.protege.plugin.ChangeProjectFormatWizardPage
onFinish() - Method in class edu.stanford.smi.protege.plugin.CreateProjectWizard
onFinish() - Method in class edu.stanford.smi.protege.plugin.ExportWizard
onFinish() - Method in class edu.stanford.smi.protege.plugin.SelectOutputFormatWizardPage
onFinish() - Method in class edu.stanford.smi.protege.plugin.SelectProjectTypeWizardPage
onFinish() - Method in class edu.stanford.smi.protege.storage.clips.ClipsExportToNewFormatWizardPage
onFinish() - Method in class edu.stanford.smi.protege.storage.clips.ClipsFilesWizardPage
onFinish() - Method in class edu.stanford.smi.protege.storage.clips.IncludedProjectsWizardPage
onFinish() - Method in class edu.stanford.smi.protege.storage.database.DatabaseWizardPage
onFinish() - Method in class edu.stanford.smi.protege.util.Wizard
onFinish() - Method in class edu.stanford.smi.protege.util.WizardPage
  Called by the system when the Finish button is pressed.
onFrameReplace(Frame, Frame) - Method in class edu.stanford.smi.protege.model.Project
onProjectPathChange(String, String) - Method in class edu.stanford.smi.protege.model.KnowledgeBaseSourcesEditor
onProjectPathChange(String, String) - Method in class edu.stanford.smi.protege.storage.clips.FileSourcesPanel
onProjectPathChange(String, String) - Method in class edu.stanford.smi.protege.storage.xml.FileSourcesPanel
onProjectURIChange(URI, URI) - Method in class edu.stanford.smi.protege.storage.database.DatabaseKnowledgeBaseSourcesEditor
onRemove(Collection) - Method in class edu.stanford.smi.protege.util.RemoveAction
onRemove(Object) - Method in class edu.stanford.smi.protege.util.RemoveAction
onRemove() - Method in class edu.stanford.smi.protege.util.RemoveAction
onSelectionChange() - Method in class edu.stanford.smi.protege.action.DeleteInstancesAction
onSelectionChange() - Method in class edu.stanford.smi.protege.ui.ClsInverseRelationshipPanel
onSelectionChange() - Method in class edu.stanford.smi.protege.ui.DirectInstancesList
onSelectionChange() - Method in class edu.stanford.smi.protege.util.AllowableAction
onSelectionChange() - Method in class edu.stanford.smi.protege.util.SelectableContainer
onSetDelegate() - Method in class edu.stanford.smi.protege.model.framestore.AbstractFrameStore
onSetDelegate() - Method in class edu.stanford.smi.protege.model.framestore.ModificationRecordFrameStore
onSetText(String) - Method in class edu.stanford.smi.protege.widget.ImageWidget
onSetText(String) - Method in class edu.stanford.smi.protege.widget.TextComponentWidget
onSetText(String) - Method in class edu.stanford.smi.protege.widget.URLWidget
onTemplateFacetValueChanged(Cls, Slot, Facet) - Method in class edu.stanford.smi.protege.widget.FormWidget
onTemplateSlotAdded(Cls, Slot) - Method in class edu.stanford.smi.protege.widget.FormWidget
onTemplateSlotRemoved(Cls, Slot) - Method in class edu.stanford.smi.protege.widget.FormWidget
ONTOLOGY_TAB_READ - Static variable in class edu.stanford.smi.protege.server.metaproject.impl.OperationImpl
  Deprecated. - Use constants from `MetaProjectConstants`
ONTOLOGY_TAB_WRITE - Static variable in class edu.stanford.smi.protege.server.metaproject.impl.OperationImpl
  Deprecated. - Use constants from `MetaProjectConstants`
OntologyException - Exception in edu.stanford.smi.protege.exception
OntologyException() - Constructor for exception edu.stanford.smi.protege.exception.OntologyException
OntologyException(String) - Constructor for exception edu.stanford.smi.protege.exception.OntologyException
OntologyException(String, Throwable) - Constructor for exception edu.stanford.smi.protege.exception.OntologyException
OntologyException(Throwable) - Constructor for exception edu.stanford.smi.protege.exception.OntologyException
OntologyJavaMappingUtil - Class in edu.stanford.smi.protege.code.generator.wrapping
OntologyJavaMappingUtil() - Constructor for class edu.stanford.smi.protege.code.generator.wrapping.OntologyJavaMappingUtil
OntologyLoadException - Exception in edu.stanford.smi.protege.exception
OntologyLoadException() - Constructor for exception edu.stanford.smi.protege.exception.OntologyLoadException
OntologyLoadException(Throwable) - Constructor for exception edu.stanford.smi.protege.exception.OntologyLoadException
OntologyLoadException(Throwable, String) - Constructor for exception edu.stanford.smi.protege.exception.OntologyLoadException
OntologyLoadException(Throwable, String, String) - Constructor for exception edu.stanford.smi.protege.exception.OntologyLoadException
OntologyUpdate - Class in edu.stanford.smi.protege.server.update
  When a client asks for a set of values, this structure includes both the values calculated and the events that tell the client how to update his cache.
OntologyUpdate(List<ValueUpdate>) - Constructor for class edu.stanford.smi.protege.server.update.OntologyUpdate
onView() - Method in class edu.stanford.smi.protege.util.ViewAction
onView(Object) - Method in class edu.stanford.smi.protege.util.ViewAction
OPEN_PROJECT_DIALOG_TITLE - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
openButton_actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protege.ui.WelcomeDialog
openMetaProject(RemoteSession) - Method in interface edu.stanford.smi.protege.server.RemoteServer
openMetaProject(RemoteSession) - Method in class edu.stanford.smi.protege.server.Server
openOtherButton_actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protege.ui.WelcomeDialog
OpenProject - Class in edu.stanford.smi.protege.action
  Prompt the user to open a new project.
OpenProject(boolean) - Constructor for class edu.stanford.smi.protege.action.OpenProject
openProject(String, RemoteSession) - Method in interface edu.stanford.smi.protege.server.RemoteServer
openProject(String, RemoteSession) - Method in class edu.stanford.smi.protege.server.Server
openProjectRequest() - Method in class edu.stanford.smi.protege.ui.ProjectManager
openProjectRequest(Component) - Method in class edu.stanford.smi.protege.ui.ProjectManager
OpenRemoteProject - Class in edu.stanford.smi.protege.action
  Description of the class
OpenRemoteProject() - Constructor for class edu.stanford.smi.protege.action.OpenRemoteProject
openRemoteProjectRequest() - Method in class edu.stanford.smi.protege.ui.ProjectManager
openRemoteProjectRequest(String, String, String, String) - Method in class edu.stanford.smi.protege.ui.ProjectManager
openSession(String, String, String) - Method in interface edu.stanford.smi.protege.server.RemoteServer
openSession(String, String, String) - Method in class edu.stanford.smi.protege.server.Server
openURL(String) - Static method in class edu.stanford.smi.protege.util.BrowserLauncher
  Attempts to open the default web browser to the given URL.
Operation - Interface in edu.stanford.smi.protege.server.metaproject
OPERATION_ADMINISTER_SERVER - Static variable in class edu.stanford.smi.protege.server.metaproject.MetaProjectConstants
OPERATION_COMMENT - Static variable in class edu.stanford.smi.protege.server.metaproject.MetaProjectConstants
OPERATION_DELEGATE - Static variable in class edu.stanford.smi.protege.server.metaproject.MetaProjectConstants
OPERATION_DISPLAY_IN_PROJECT_LIST - Static variable in class edu.stanford.smi.protege.server.metaproject.MetaProjectConstants
OPERATION_KILL_OTHER_USER_SESSION - Static variable in class edu.stanford.smi.protege.server.metaproject.MetaProjectConstants
OPERATION_ONTOLOGY_TAB_READ - Static variable in class edu.stanford.smi.protege.server.metaproject.MetaProjectConstants
  Deprecated. - Use constants from `OwlMetaProjectConstants`
OPERATION_ONTOLOGY_TAB_WRITE - Static variable in class edu.stanford.smi.protege.server.metaproject.MetaProjectConstants
  Deprecated. - Use constants from `OwlMetaProjectConstants`
OPERATION_PROPERTY_TAB_READ - Static variable in class edu.stanford.smi.protege.server.metaproject.MetaProjectConstants
  Deprecated. - Use constants from `OwlMetaProjectConstants`
OPERATION_PROPERTY_TAB_WRITE - Static variable in class edu.stanford.smi.protege.server.metaproject.MetaProjectConstants
  Deprecated. - Use constants from `OwlMetaProjectConstants`
OPERATION_READ - Static variable in class edu.stanford.smi.protege.server.metaproject.MetaProjectConstants
OPERATION_SHUTDOWN_SERVER - Static variable in class edu.stanford.smi.protege.server.metaproject.MetaProjectConstants
OPERATION_START_REMOTE_PROJECT - Static variable in class edu.stanford.smi.protege.server.metaproject.MetaProjectConstants
OPERATION_STOP_REMOTE_PROJECT - Static variable in class edu.stanford.smi.protege.server.metaproject.MetaProjectConstants
OPERATION_WRITE - Static variable in class edu.stanford.smi.protege.server.metaproject.MetaProjectConstants
OperationImpl - Class in edu.stanford.smi.protege.server.metaproject.impl
OperationImpl(MetaProjectImpl, Instance) - Constructor for class edu.stanford.smi.protege.server.metaproject.impl.OperationImpl
OPTION_CANCEL - Static variable in class edu.stanford.smi.protege.util.ModalDialog
OPTION_CLOSE - Static variable in class edu.stanford.smi.protege.util.ModalDialog
OPTION_NO - Static variable in class edu.stanford.smi.protege.util.ModalDialog
OPTION_OK - Static variable in class edu.stanford.smi.protege.util.ModalDialog
OPTION_YES - Static variable in class edu.stanford.smi.protege.util.ModalDialog
os - Variable in class edu.stanford.smi.protege.server.socket.deflate.CompressingOutputStream
OtherFacetsRenderer - Class in edu.stanford.smi.protege.ui
  Renderer for "other" facets.
OtherFacetsRenderer() - Constructor for class edu.stanford.smi.protege.ui.OtherFacetsRenderer
OVERRIDE_MESSAGE - Static variable in interface edu.stanford.smi.protege.storage.clips.ParserConstants
  RegularExpression Id.
overrideMessageFacet(Frame, Slot) - Method in class edu.stanford.smi.protege.storage.clips.Parser
overwriteDomainInformation(Project, Collection) - Method in class edu.stanford.smi.protege.plugin.AbstractBackendExportPlugin
overwriteDomainInformation(Project, Collection) - Method in class edu.stanford.smi.protege.storage.clips.ClipsFilesExportProjectPlugin
overwriteKB(KnowledgeBase, boolean) - Method in interface edu.stanford.smi.protege.storage.database.DatabaseFrameDb
overwriteKB(KnowledgeBase, boolean) - Method in class edu.stanford.smi.protege.storage.database.DefaultDatabaseFrameDb
owlMode() - Method in class edu.stanford.smi.protege.storage.database.DatabaseKnowledgeBaseFactory
OWN_FACET_ADDED - Static variable in class edu.stanford.smi.protege.event.FrameEvent
OWN_FACET_REMOVED - Static variable in class edu.stanford.smi.protege.event.FrameEvent
OWN_FACET_VALUE_CHANGED - Static variable in class edu.stanford.smi.protege.event.FrameEvent
OWN_SLOT_ADDED - Static variable in class edu.stanford.smi.protege.event.FrameEvent
OWN_SLOT_REMOVED - Static variable in class edu.stanford.smi.protege.event.FrameEvent
OWN_SLOT_VALUE - Static variable in interface edu.stanford.smi.protege.storage.xml.XMLString.ElementName
OWN_SLOT_VALUE_CHANGED - Static variable in class edu.stanford.smi.protege.event.FrameEvent
ownFacetAdded(FrameEvent) - Method in class edu.stanford.smi.protege.event.FrameAdapter
ownFacetAdded(FrameEvent) - Method in interface edu.stanford.smi.protege.event.FrameListener
ownFacetRemoved(FrameEvent) - Method in class edu.stanford.smi.protege.event.FrameAdapter
ownFacetRemoved(FrameEvent) - Method in interface edu.stanford.smi.protege.event.FrameListener
ownFacetValueChanged(FrameEvent) - Method in class edu.stanford.smi.protege.event.FrameAdapter
ownFacetValueChanged(FrameEvent) - Method in interface edu.stanford.smi.protege.event.FrameListener
ownSlotAdded(FrameEvent) - Method in class edu.stanford.smi.protege.event.FrameAdapter
ownSlotAdded(FrameEvent) - Method in interface edu.stanford.smi.protege.event.FrameListener
ownSlotRemoved(FrameEvent) - Method in class edu.stanford.smi.protege.event.FrameAdapter
ownSlotRemoved(FrameEvent) - Method in interface edu.stanford.smi.protege.event.FrameListener
ownSlotValueChanged(FrameEvent) - Method in class edu.stanford.smi.protege.event.FrameAdapter
ownSlotValueChanged(FrameEvent) - Method in interface edu.stanford.smi.protege.event.FrameListener
OwnSlotValueFrameRenderer - Class in edu.stanford.smi.protege.ui
  Frame Renderer that makes it clear whether the frame being rendered is valid or not.
OwnSlotValueFrameRenderer(Frame, Slot) - Constructor for class edu.stanford.smi.protege.ui.OwnSlotValueFrameRenderer

## P

pack(Component) - Static method in class edu.stanford.smi.protege.util.ComponentUtilities
PACKAGE - Static variable in class edu.stanford.smi.protege.code.generator.wrapping.ProjectBasedJavaCodeGeneratorOptions
PacketHeader - Class in edu.stanford.smi.protege.server.socket.deflate
  This code is based on the ideas presented in `http://javatechniques.com/blog/compressing-data-sent-over-a-socket/` by Philip Isenhour.
PacketHeader(int, int) - Constructor for class edu.stanford.smi.protege.server.socket.deflate.PacketHeader
paint(Graphics) - Method in class edu.stanford.smi.protege.ui.ProjectMenuBar
paint(Graphics) - Method in class edu.stanford.smi.protege.util.DefaultRenderer
paint(Graphics) - Method in class edu.stanford.smi.protege.widget.AbstractWidget
paintIcon(Graphics, Icon, Point, Dimension) - Method in class edu.stanford.smi.protege.util.DefaultRenderer
paintImmediately(Component) - Static method in class edu.stanford.smi.protege.util.ComponentUtilities
paintString(Graphics, String, Point, Dimension) - Method in class edu.stanford.smi.protege.util.DefaultRenderer
paintString(Graphics, String, Point, Color, Dimension) - Method in class edu.stanford.smi.protege.util.DefaultRenderer
PAL_CONSTRAINT - Static variable in interface edu.stanford.smi.protege.model.Model.Cls
PAL_CONSTRAINT - Static variable in interface edu.stanford.smi.protege.model.Model.ClsID
PAL_DESCRIPTION - Static variable in interface edu.stanford.smi.protege.model.Model.Slot
PAL_DESCRIPTION - Static variable in interface edu.stanford.smi.protege.model.Model.SlotID
PAL_NAME - Static variable in interface edu.stanford.smi.protege.model.Model.Slot
PAL_NAME - Static variable in interface edu.stanford.smi.protege.model.Model.SlotID
PAL_RANGE - Static variable in interface edu.stanford.smi.protege.model.Model.Slot
PAL_RANGE - Static variable in interface edu.stanford.smi.protege.model.Model.SlotID
PAL_STATEMENT - Static variable in interface edu.stanford.smi.protege.model.Model.Slot
PAL_STATEMENT - Static variable in interface edu.stanford.smi.protege.model.Model.SlotID
ParentChildNode - Class in edu.stanford.smi.protege.ui
  Tree node that contains the superclass-subclass relations.
ParentChildNode(LazyTreeNode, Cls) - Constructor for class edu.stanford.smi.protege.ui.ParentChildNode
ParentChildNodeComparator - Class in edu.stanford.smi.protege.ui
  Special comparator for Parent-Child tree (class-subclass tree), in which the system frames have a lower value than the user frames.
ParentChildNodeComparator() - Constructor for class edu.stanford.smi.protege.ui.ParentChildNodeComparator
ParentChildRoot - Class in edu.stanford.smi.protege.ui
  Tree Root for the superclass-subclass relationship
ParentChildRoot(Cls) - Constructor for class edu.stanford.smi.protege.ui.ParentChildRoot
ParentChildRoot(Cls, boolean) - Constructor for class edu.stanford.smi.protege.ui.ParentChildRoot
ParentChildRoot(Collection) - Constructor for class edu.stanford.smi.protege.ui.ParentChildRoot
ParentChildRoot(Collection, boolean) - Constructor for class edu.stanford.smi.protege.ui.ParentChildRoot
parse(String) - Method in class edu.stanford.smi.protege.util.StandardDateFormat
parseArg(String) - Method in class edu.stanford.smi.protege.server.Server
ParseErrorPanel - Class in edu.stanford.smi.protege.storage.clips
  Panel to display the error messages resulting from parsing a clips file.
ParseErrorPanel(Collection) - Constructor for class edu.stanford.smi.protege.storage.clips.ParseErrorPanel
ParseException - Exception in edu.stanford.smi.protege.storage.clips
  This exception is thrown when parse errors are encountered.
ParseException(Token, int[][], String[]) - Constructor for exception edu.stanford.smi.protege.storage.clips.ParseException
  This constructor is used by the method "generateParseException" in the generated parser.
ParseException() - Constructor for exception edu.stanford.smi.protege.storage.clips.ParseException
  The following constructors are for use by you for whatever purpose you can think of.
ParseException(String) - Constructor for exception edu.stanford.smi.protege.storage.clips.ParseException
  Constructor with message.
parseKnowledgeBase() - Method in class edu.stanford.smi.protege.storage.clips.Parser
parseOntology() - Method in class edu.stanford.smi.protege.storage.clips.Parser
Parser - Class in edu.stanford.smi.protege.storage.clips
Parser(InputStream) - Constructor for class edu.stanford.smi.protege.storage.clips.Parser
  Constructor with InputStream.
Parser(InputStream, String) - Constructor for class edu.stanford.smi.protege.storage.clips.Parser
  Constructor with InputStream and supplied encoding
Parser(Reader) - Constructor for class edu.stanford.smi.protege.storage.clips.Parser
  Constructor.
Parser(ParserTokenManager) - Constructor for class edu.stanford.smi.protege.storage.clips.Parser
  Constructor with generated Token Manager.
ParserConstants - Interface in edu.stanford.smi.protege.storage.clips
  Token literal values and constants.
ParserTokenManager - Class in edu.stanford.smi.protege.storage.clips
  Token Manager.
ParserTokenManager(SimpleCharStream) - Constructor for class edu.stanford.smi.protege.storage.clips.ParserTokenManager
  Constructor.
ParserTokenManager(SimpleCharStream, int) - Constructor for class edu.stanford.smi.protege.storage.clips.ParserTokenManager
  Constructor.
PasswordFieldWidget - Class in edu.stanford.smi.protege.widget
PasswordFieldWidget() - Constructor for class edu.stanford.smi.protege.widget.PasswordFieldWidget
Paste - Class in edu.stanford.smi.protege.action
  TODO Class Comment
Paste(boolean) - Constructor for class edu.stanford.smi.protege.action.Paste
PASTE_ACTION - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
PathSplitter - Class in edu.stanford.smi.protege.util
  Description of the class
PathSplitter(String) - Constructor for class edu.stanford.smi.protege.util.PathSplitter
PATTERN_MATCH - Static variable in interface edu.stanford.smi.protege.storage.clips.ParserConstants
  RegularExpression Id.
patternMatchFacet(Frame, Slot) - Method in class edu.stanford.smi.protege.storage.clips.Parser
patternMatchRole(Frame, Slot) - Method in class edu.stanford.smi.protege.storage.clips.Parser
pause() - Static method in class edu.stanford.smi.protege.util.SystemUtilities
performUpdate(Cache<S, V, R>) - Method in class edu.stanford.smi.protege.util.transaction.cache.serialize.CacheAbortComplete
performUpdate(Cache<S, V, R>) - Method in class edu.stanford.smi.protege.util.transaction.cache.serialize.CacheBeginTransaction
performUpdate(Cache<S, V, R>) - Method in class edu.stanford.smi.protege.util.transaction.cache.serialize.CacheCommitTransaction
performUpdate(Cache<S, V, R>) - Method in class edu.stanford.smi.protege.util.transaction.cache.serialize.CacheCompleted
performUpdate(Cache<S, V, R>) - Method in class edu.stanford.smi.protege.util.transaction.cache.serialize.CacheDelete
performUpdate(Cache<S, V, R>) - Method in class edu.stanford.smi.protege.util.transaction.cache.serialize.CacheModify
performUpdate(Cache<S, V, R>) - Method in class edu.stanford.smi.protege.util.transaction.cache.serialize.CacheRead
performUpdate(Cache<S, V, R>) - Method in class edu.stanford.smi.protege.util.transaction.cache.serialize.CacheRollbackTransaction
performUpdate(Cache<S, V, R>) - Method in class edu.stanford.smi.protege.util.transaction.cache.serialize.CacheStartComplete
performUpdate(Cache<S, V, R>) - Method in class edu.stanford.smi.protege.util.transaction.cache.serialize.SerializedCacheUpdate
pickCls(Component, Collection) - Static method in class edu.stanford.smi.protege.ui.DisplayUtilities
  Deprecated. Use #pickCls(Component, KnowledgeBase, Collection)
pickCls(Component, KnowledgeBase, Collection) - Static method in class edu.stanford.smi.protege.ui.DisplayUtilities
pickCls(Component, Collection, String) - Static method in class edu.stanford.smi.protege.ui.DisplayUtilities
  Deprecated. Use #pickCls(Component, KnowledgeBase, Collection, String)
pickCls(Component, KnowledgeBase, Collection, String) - Static method in class edu.stanford.smi.protege.ui.DisplayUtilities
pickClses(Component, KnowledgeBase) - Static method in class edu.stanford.smi.protege.ui.DisplayUtilities
pickClses(Component, KnowledgeBase, String) - Static method in class edu.stanford.smi.protege.ui.DisplayUtilities
pickClses(Component, Collection) - Static method in class edu.stanford.smi.protege.ui.DisplayUtilities
  Deprecated. Use #pickClses(Component, KnowledgeBase, Collection)
pickClses(Component, KnowledgeBase, Collection) - Static method in class edu.stanford.smi.protege.ui.DisplayUtilities
pickClses(Component, KnowledgeBase, Collection, String) - Static method in class edu.stanford.smi.protege.ui.DisplayUtilities
pickConcreteCls(Component, KnowledgeBase, String) - Static method in class edu.stanford.smi.protege.ui.DisplayUtilities
pickConcreteCls(Component, Collection) - Static method in class edu.stanford.smi.protege.ui.DisplayUtilities
  Deprecated. Use #pickConcreteCls(Component, KnowledgeBase kb, Collection)
pickConcreteCls(Component, KnowledgeBase, Collection) - Static method in class edu.stanford.smi.protege.ui.DisplayUtilities
pickConcreteCls(Component, Collection, String) - Static method in class edu.stanford.smi.protege.ui.DisplayUtilities
  Deprecated. Use #pickConcreteCls(Component, KnowledgeBase kb, Collection, String)
pickConcreteCls(Component, KnowledgeBase, Collection, String) - Static method in class edu.stanford.smi.protege.ui.DisplayUtilities
pickConcreteCls(Collection, String) - Method in class edu.stanford.smi.protege.ui.SubclassPane
pickConcreteCls(Collection, String) - Method in class edu.stanford.smi.protege.ui.SubslotPane
pickForm(Component, Project) - Static method in class edu.stanford.smi.protege.ui.DisplayUtilities
pickForm(Component, Project, String) - Static method in class edu.stanford.smi.protege.ui.DisplayUtilities
pickInstance(Component, KnowledgeBase) - Static method in class edu.stanford.smi.protege.ui.DisplayUtilities
pickInstance(Component, Collection) - Static method in class edu.stanford.smi.protege.ui.DisplayUtilities
pickInstance(Component, Collection, String) - Static method in class edu.stanford.smi.protege.ui.DisplayUtilities
pickInstanceFromCollection(Component, Collection, int, String) - Static method in class edu.stanford.smi.protege.ui.DisplayUtilities
pickInstanceFromCollection(Component, Collection, int, String, ListCellRenderer) - Static method in class edu.stanford.smi.protege.ui.DisplayUtilities
pickInstances(Component, Collection) - Static method in class edu.stanford.smi.protege.ui.DisplayUtilities
  Deprecated. Use #pickInstance(Component, KnowledgeBase, Collection)
pickInstances(Component, KnowledgeBase, Collection) - Static method in class edu.stanford.smi.protege.ui.DisplayUtilities
pickInstances(Component, Collection, String) - Static method in class edu.stanford.smi.protege.ui.DisplayUtilities
  deprecated Use #pickInstances(Component, KnowldgeBase, Collection, String)
pickInstances(Component, KnowledgeBase, Collection, String) - Static method in class edu.stanford.smi.protege.ui.DisplayUtilities
pickInstancesFromCollection(Component, Collection, String) - Static method in class edu.stanford.smi.protege.ui.DisplayUtilities
pickSlot(Component, Collection) - Static method in class edu.stanford.smi.protege.ui.DisplayUtilities
pickSlot(Component, Collection, String) - Static method in class edu.stanford.smi.protege.ui.DisplayUtilities
pickSlots(Component, Collection) - Static method in class edu.stanford.smi.protege.ui.DisplayUtilities
pickSlots(Component, Collection, String) - Static method in class edu.stanford.smi.protege.ui.DisplayUtilities
pickSymbol(Component, String, Object, Collection) - Static method in class edu.stanford.smi.protege.ui.DisplayUtilities
PickSymbolPanel - Class in edu.stanford.smi.protege.ui
  Panel to allow the user to pick a symbol value from a set of symbols.
PickSymbolPanel(String, Object, Collection) - Constructor for class edu.stanford.smi.protege.ui.PickSymbolPanel
ping(KnowledgeBase) - Static method in class edu.stanford.smi.protege.server.util.PingProtegeServerJob
PingProtegeServerJob - Class in edu.stanford.smi.protege.server.util
PingProtegeServerJob(KnowledgeBase) - Constructor for class edu.stanford.smi.protege.server.util.PingProtegeServerJob
PlaceHolderNarrowFrameStore - Class in edu.stanford.smi.protege.model.framestore
  This is a placeholder with no functionality.
PlaceHolderNarrowFrameStore() - Constructor for class edu.stanford.smi.protege.model.framestore.PlaceHolderNarrowFrameStore
PlasticLookAndFeelAction - Class in edu.stanford.smi.protege.action
  TODO Class Comment
PlasticLookAndFeelAction() - Constructor for class edu.stanford.smi.protege.action.PlasticLookAndFeelAction
Plugin - Interface in edu.stanford.smi.protege.plugin
PluginUtilities - Class in edu.stanford.smi.protege.plugin
PluginUtilities() - Constructor for class edu.stanford.smi.protege.plugin.PluginUtilities
Policy - Interface in edu.stanford.smi.protege.server.metaproject
PolicyControlledObject - Interface in edu.stanford.smi.protege.server.metaproject
PolicyControlledObjectCollection - Interface in edu.stanford.smi.protege.server.metaproject
PolicyControlledObjectCollectionImpl - Class in edu.stanford.smi.protege.server.metaproject.impl
PolicyControlledObjectCollectionImpl(MetaProjectImpl, Instance) - Constructor for class edu.stanford.smi.protege.server.metaproject.impl.PolicyControlledObjectCollectionImpl
PolicyControlledObjectImpl - Class in edu.stanford.smi.protege.server.metaproject.impl
PolicyControlledObjectImpl(MetaProjectImpl, Instance) - Constructor for class edu.stanford.smi.protege.server.metaproject.impl.PolicyControlledObjectImpl
PolicyControlledObjectImpl(MetaProjectImpl, Instance, MetaProjectImpl.ClsEnum) - Constructor for class edu.stanford.smi.protege.server.metaproject.impl.PolicyControlledObjectImpl
PolicyImpl - Class in edu.stanford.smi.protege.server.metaproject.impl
PolicyImpl(MetaProjectImpl) - Constructor for class edu.stanford.smi.protege.server.metaproject.impl.PolicyImpl
PopupMenuMouseListener - Class in edu.stanford.smi.protege.util
  An adapter that listeners for popup menu mouse events and pops up a menu.
PopupMenuMouseListener(JComponent) - Constructor for class edu.stanford.smi.protege.util.PopupMenuMouseListener
postEvent(Collection, Object, int, Object, Object, Object) - Method in class edu.stanford.smi.protege.event.ClsEventDispatcher
postEvent(Collection, Object, int, Object, Object, Object) - Method in class edu.stanford.smi.protege.event.FacetEventDispatcher
postEvent(Collection, Object, int, Object, Object, Object) - Method in class edu.stanford.smi.protege.event.InstanceEventDispatcher
postEvent(Collection, Object, int, Object, Object, Object) - Method in class edu.stanford.smi.protege.event.ProjectEventDispatcher
postEvent(Collection, Object, int, Object, Object, Object) - Method in class edu.stanford.smi.protege.event.SlotEventDispatcher
postEvent(Collection, Object, int, Object, Object, Object) - Method in class edu.stanford.smi.protege.event.WidgetEventDispatcher
postEvent(Collection, Object, int, Object, Object, Object) - Method in interface edu.stanford.smi.protege.util.EventDispatcher
postEvent(Object, int) - Method in class edu.stanford.smi.protege.util.ListenerCollection
postEvent(Object, int, Object) - Method in class edu.stanford.smi.protege.util.ListenerCollection
postEvent(Object, int, Object, Object) - Method in class edu.stanford.smi.protege.util.ListenerCollection
postEvent(Object, int, Object, Object, Object) - Method in class edu.stanford.smi.protege.util.ListenerCollection
postEvent(Collection, Object, int, Object, Object, Object) - Method in class edu.stanford.smi.protege.util.ProjectViewDispatcher
postEvent(Collection, Object, int, Object, Object, Object) - Method in class edu.stanford.smi.protege.util.SelectionEventDispatcher
postFormChangeEvent(Cls) - Method in class edu.stanford.smi.protege.model.Project
postFormChangeEvent(WidgetDescriptor) - Method in class edu.stanford.smi.protege.model.Project
postProjectEvent(int) - Method in class edu.stanford.smi.protege.model.Project
postProjectEvent(int, ClsWidget) - Method in class edu.stanford.smi.protege.model.Project
postWidgetEvent(int) - Method in class edu.stanford.smi.protege.widget.AbstractClsWidget
PREFERENCES_DIALOG_TITLE - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
PreferencesPanel - Class in edu.stanford.smi.protege.ui
PreferencesPanel() - Constructor for class edu.stanford.smi.protege.ui.PreferencesPanel
preferredLayoutSize(Container) - Method in class edu.stanford.smi.protege.util.ResizingLayout
PREFIX - Static variable in class edu.stanford.smi.protege.util.FileHandler
PREFIX_MODE - Static variable in class edu.stanford.smi.protege.code.generator.wrapping.ProjectBasedJavaCodeGeneratorOptions
preload(boolean) - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
preload(Set<String>, boolean, RemoteSession) - Method in interface edu.stanford.smi.protege.server.framestore.RemoteServerFrameStore
preload(Set<String>, boolean, RemoteSession) - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
PRELOAD_FRAME_LIMIT - Static variable in class edu.stanford.smi.protege.server.ServerProperties
preloadUserFrames() - Static method in class edu.stanford.smi.protege.server.ServerProperties
prepareToSaveInFormat(KnowledgeBase, KnowledgeBaseFactory, Collection) - Method in class edu.stanford.smi.protege.model.AbstractKnowledgeBaseFactory
prepareToSaveInFormat(KnowledgeBase, KnowledgeBaseFactory, Collection) - Method in interface edu.stanford.smi.protege.model.KnowledgeBaseFactory2
prepareToSaveInFormat(KnowledgeBase, KnowledgeBaseFactory, Collection) - Method in class edu.stanford.smi.protege.storage.database.DatabaseKnowledgeBaseFactory
prevCharIsCR - Variable in class edu.stanford.smi.protege.storage.clips.SimpleCharStream
prevCharIsLF - Variable in class edu.stanford.smi.protege.storage.clips.SimpleCharStream
PRIMITIVE_TYPE - Static variable in interface edu.stanford.smi.protege.model.Model.Cls
PRIMITIVE_TYPE - Static variable in interface edu.stanford.smi.protege.model.Model.ClsID
print(int, Method, Object[]) - Static method in class edu.stanford.smi.protege.model.framestore.TraceFrameStoreHandler
print(int) - Method in class edu.stanford.smi.protege.storage.clips.ClipsFileWriter
print(String) - Method in class edu.stanford.smi.protege.storage.clips.ClipsFileWriter
printFrame(Frame) - Method in class edu.stanford.smi.protege.storage.clips.ClipsFileWriter
printFrameName(String) - Method in class edu.stanford.smi.protege.storage.clips.ClipsFileWriter
printHeader(PrintWriter, Collection<Slot>) - Method in class edu.stanford.smi.protege.action.ExportToCsvAction
printImplementationCode(PrintWriter, Cls) - Method in class edu.stanford.smi.protege.code.generator.wrapping.JavaCodeGenerator
printImplementationSlotCode(PrintWriter, SlotAtClassCode) - Method in class edu.stanford.smi.protege.code.generator.wrapping.JavaCodeGenerator
printInstance(PrintWriter, Instance) - Method in class edu.stanford.smi.protege.action.ExportToCsvAction
printInterfaceCode(PrintWriter, Cls) - Method in class edu.stanford.smi.protege.code.generator.wrapping.JavaCodeGenerator
printListenersByHashCode(int) - Method in class edu.stanford.smi.protege.model.framestore.EventDispatchFrameStore
println() - Method in class edu.stanford.smi.protege.storage.clips.ClipsFileWriter
println(String) - Method in class edu.stanford.smi.protege.storage.clips.ClipsFileWriter
printMemoryUsage() - Static method in class edu.stanford.smi.protege.util.SystemUtilities
printMemoryUsageNoGC() - Static method in class edu.stanford.smi.protege.util.SystemUtilities
printResults(Writer, Collection<Instance>, Collection<Slot>) - Method in class edu.stanford.smi.protege.action.ExportToCsvAction
printSizes(Component) - Static method in class edu.stanford.smi.protege.ui.SpringUtilities
  A debugging utility that prints to stdout the component's minimum, preferred, and maximum sizes.
printSucceeded() - Method in class edu.stanford.smi.protege.storage.clips.ClipsFileWriter
printSystemProperties(PrintStream) - Static method in class edu.stanford.smi.protege.util.SystemUtilities
printUsage() - Method in class edu.stanford.smi.protege.server.Server
printUserInterfaceCode(PrintWriter, Cls) - Method in class edu.stanford.smi.protege.code.generator.wrapping.JavaCodeGenerator
priority() - Method in enum edu.stanford.smi.protege.server.framestore.background.CacheRequestReason
priority(EnumSet<CacheRequestReason>) - Static method in enum edu.stanford.smi.protege.server.framestore.background.CacheRequestReason
PRIVATE - Static variable in interface edu.stanford.smi.protege.storage.clips.ParserConstants
  RegularExpression Id.
processFocusEvent(FocusEvent) - Method in class edu.stanford.smi.protege.util.SelectableTree
processManifest(Manifest, ClassLoader) - Static method in class edu.stanford.smi.protege.plugin.PluginUtilities
processMouseEvent(MouseEvent) - Method in class edu.stanford.smi.protege.util.SelectableList
processMouseMotionEvent(MouseEvent) - Method in class edu.stanford.smi.protege.util.SelectableList
PROGRAM_NAME_PROPERTY - Static variable in class edu.stanford.smi.protege.resource.Text
Project - Class in edu.stanford.smi.protege.model
  The aggregation of a domain knowledge base with its user interface.
Project(URI, KnowledgeBaseFactory, Collection, boolean) - Constructor for class edu.stanford.smi.protege.model.Project
Project(URI, KnowledgeBaseFactory, Collection, boolean, boolean) - Constructor for class edu.stanford.smi.protege.model.Project
Project(String, Collection) - Constructor for class edu.stanford.smi.protege.model.Project
PROJECT_ADD - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
PROJECT_ARCHIVE - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
PROJECT_BUILD - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
PROJECT_CHANGE_INCLUDED - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
PROJECT_CLOSE - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
PROJECT_CLOSED - Static variable in class edu.stanford.smi.protege.event.ProjectEvent
PROJECT_CONFIGURE - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
PROJECT_CONFIGURE_ARCHIVE - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
PROJECT_CONVERT - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
PROJECT_EXPORT - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
PROJECT_EXPORT_TO_FORMAT - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
PROJECT_FILE_ENCODINGS - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
PROJECT_GENERATE_HTML - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
PROJECT_IMPORT - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
PROJECT_IMPORT_TO_STANDARD - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
PROJECT_INCLUDE - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
PROJECT_MANAGE_INCLUDED - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
PROJECT_MANAGE_INCLUDED_DIALOG - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
PROJECT_MERGE_INCLUDED - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
PROJECT_METRICS - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
PROJECT_NEW - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
PROJECT_OPEN - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
PROJECT_OPEN_RECENT - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
PROJECT_OPEN_REMOTE - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
PROJECT_REMOVE - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
PROJECT_REVERT - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
PROJECT_SAVE - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
PROJECT_SAVE_AS - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
PROJECT_SAVE_TO_FORMAT - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
PROJECT_SAVED - Static variable in class edu.stanford.smi.protege.event.ProjectEvent
PROJECT_SHOW_INCLUDED - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
ProjectAction - Class in edu.stanford.smi.protege.action
  Base class for actions that access the current project.
ProjectAction(String) - Constructor for class edu.stanford.smi.protege.action.ProjectAction
ProjectAction(String, Icon) - Constructor for class edu.stanford.smi.protege.action.ProjectAction
ProjectAction(ResourceKey) - Constructor for class edu.stanford.smi.protege.action.ProjectAction
ProjectAction(ResourceKey, boolean) - Constructor for class edu.stanford.smi.protege.action.ProjectAction
ProjectAdapter - Class in edu.stanford.smi.protege.event
  Adapter for listeners to project events.
ProjectAdapter() - Constructor for class edu.stanford.smi.protege.event.ProjectAdapter
ProjectBasedJavaCodeGeneratorOptions - Class in edu.stanford.smi.protege.code.generator.wrapping
ProjectBasedJavaCodeGeneratorOptions() - Constructor for class edu.stanford.smi.protege.code.generator.wrapping.ProjectBasedJavaCodeGeneratorOptions
ProjectChooser - Class in edu.stanford.smi.protege.util
  This is a really horrible hack of a class.
ProjectChooser() - Constructor for class edu.stanford.smi.protege.util.ProjectChooser
projectClosed(ProjectEvent) - Method in class edu.stanford.smi.protege.event.ProjectAdapter
projectClosed(ProjectEvent) - Method in interface edu.stanford.smi.protege.event.ProjectListener
ProjectEvent - Class in edu.stanford.smi.protege.event
  Event generated when the project changes.
ProjectEvent(Project, int, ClsWidget) - Constructor for class edu.stanford.smi.protege.event.ProjectEvent
ProjectEvent(Project, int) - Constructor for class edu.stanford.smi.protege.event.ProjectEvent
ProjectEventDispatcher - Class in edu.stanford.smi.protege.event
  Dispatcher to send project events to their listeners.
ProjectEventDispatcher() - Constructor for class edu.stanford.smi.protege.event.ProjectEventDispatcher
ProjectFixupPlugin - Interface in edu.stanford.smi.protege.plugin
ProjectFixupsPluginManager - Class in edu.stanford.smi.protege.plugin
ProjectFixupsPluginManager() - Constructor for class edu.stanford.smi.protege.plugin.ProjectFixupsPluginManager
ProjectInfo - Class in edu.stanford.smi.protege.server.util
ProjectInfo(String, String, String) - Constructor for class edu.stanford.smi.protege.server.util.ProjectInfo
ProjectInstance - Interface in edu.stanford.smi.protege.server.metaproject
ProjectInstanceImpl - Class in edu.stanford.smi.protege.server.metaproject.impl
ProjectInstanceImpl(MetaProjectImpl, Instance) - Constructor for class edu.stanford.smi.protege.server.metaproject.impl.ProjectInstanceImpl
ProjectListener - Interface in edu.stanford.smi.protege.event
  Listener interface for projects.
ProjectManager - Class in edu.stanford.smi.protege.ui
  Manager for the open project.
ProjectMenuBar - Class in edu.stanford.smi.protege.ui
  The main menu bar for the application.
ProjectMenuBar() - Constructor for class edu.stanford.smi.protege.ui.ProjectMenuBar
projectNotificationReceived(ServerProjectNotificationEvent) - Method in class edu.stanford.smi.protege.event.ServerProjectAdapter
projectNotificationReceived(ServerProjectNotificationEvent) - Method in interface edu.stanford.smi.protege.event.ServerProjectListener
ProjectPlugin - Interface in edu.stanford.smi.protege.plugin
ProjectPluginAdapter - Class in edu.stanford.smi.protege.plugin
ProjectPluginAdapter() - Constructor for class edu.stanford.smi.protege.plugin.ProjectPluginAdapter
ProjectPluginManager - Class in edu.stanford.smi.protege.plugin
ProjectPluginManager() - Constructor for class edu.stanford.smi.protege.plugin.ProjectPluginManager
projectSaved(ProjectEvent) - Method in class edu.stanford.smi.protege.event.ProjectAdapter
projectSaved(ProjectEvent) - Method in interface edu.stanford.smi.protege.event.ProjectListener
ProjectsServerPanel - Class in edu.stanford.smi.protege.server.admin
ProjectsServerPanel(RemoteServer, RemoteSession) - Constructor for class edu.stanford.smi.protege.server.admin.ProjectsServerPanel
projectStatusChanged(ServerProjectStatusChangeEvent) - Method in class edu.stanford.smi.protege.event.ServerProjectAdapter
projectStatusChanged(ServerProjectStatusChangeEvent) - Method in interface edu.stanford.smi.protege.event.ServerProjectListener
ProjectToolBar - Class in edu.stanford.smi.protege.ui
  The main toolbar for the application.
ProjectToolBar() - Constructor for class edu.stanford.smi.protege.ui.ProjectToolBar
ProjectView - Class in edu.stanford.smi.protege.ui
ProjectView(Project) - Constructor for class edu.stanford.smi.protege.ui.ProjectView
ProjectViewDispatcher - Class in edu.stanford.smi.protege.util
ProjectViewDispatcher() - Constructor for class edu.stanford.smi.protege.util.ProjectViewDispatcher
ProjectViewEvent - Class in edu.stanford.smi.protege.util
ProjectViewEvent(ProjectView, ProjectViewEvent.Type) - Constructor for class edu.stanford.smi.protege.util.ProjectViewEvent
ProjectViewEvent.Type - Enum in edu.stanford.smi.protege.util
ProjectViewListener - Interface in edu.stanford.smi.protege.util
PROPAGATION - Static variable in interface edu.stanford.smi.protege.storage.clips.ParserConstants
  RegularExpression Id.
propagationFacet(Frame, Slot) - Method in class edu.stanford.smi.protege.storage.clips.Parser
PROPERTIES_IN_USER_HOME - Static variable in class edu.stanford.smi.protege.util.ApplicationProperties
PropertiesTableModel - Class in edu.stanford.smi.protege.widget
PropertiesTableModel() - Constructor for class edu.stanford.smi.protege.widget.PropertiesTableModel
PropertiesTableModel(Properties) - Constructor for class edu.stanford.smi.protege.widget.PropertiesTableModel
PROPERTY_BIT_TYPE_NAME - Static variable in class edu.stanford.smi.protege.storage.database.RobustConnection
PROPERTY_FRAME_NAME_TYPE_NAME - Static variable in class edu.stanford.smi.protege.storage.database.RobustConnection
PROPERTY_INTEGER_TYPE_NAME - Static variable in class edu.stanford.smi.protege.storage.database.RobustConnection
PROPERTY_LONG_RUNNING_CONNECTIONS - Static variable in class edu.stanford.smi.protege.storage.database.pool.ConnectionPool
PROPERTY_LONGVARCHAR_TYPE_NAME - Static variable in class edu.stanford.smi.protege.storage.database.RobustConnection
PROPERTY_MAX_DB_CONNECTIONS - Static variable in class edu.stanford.smi.protege.storage.database.pool.ConnectionPool
PROPERTY_REFRESH_CONNECTIONS_TIME - Static variable in class edu.stanford.smi.protege.storage.database.pool.ConnectionPool
PROPERTY_SHORT_VALUE_TYPE_NAME - Static variable in class edu.stanford.smi.protege.storage.database.RobustConnection
PROPERTY_SMALL_INTEGER_TYPE_NAME - Static variable in class edu.stanford.smi.protege.storage.database.RobustConnection
PROPERTY_TAB_READ - Static variable in class edu.stanford.smi.protege.server.metaproject.impl.OperationImpl
  Deprecated. - Use constants from `MetaProjectConstants`
PROPERTY_TAB_WRITE - Static variable in class edu.stanford.smi.protege.server.metaproject.impl.OperationImpl
  Deprecated. - Use constants from `MetaProjectConstants`
PROPERTY_VARCHAR_TYPE_SIZE - Static variable in class edu.stanford.smi.protege.storage.database.RobustConnection
PropertyList - Class in edu.stanford.smi.protege.util
  A property list used by widgets.
PropertyList(Instance) - Constructor for class edu.stanford.smi.protege.util.PropertyList
PropertyMapUtil - Class in edu.stanford.smi.protege.model
  Utilities for working with the PropertyMap
PropertyMapUtil() - Constructor for class edu.stanford.smi.protege.model.PropertyMapUtil
PropertyValue - Interface in edu.stanford.smi.protege.server.metaproject
PropertyValueImpl - Class in edu.stanford.smi.protege.server.metaproject.impl
PropertyValueImpl(MetaProjectImpl, Instance) - Constructor for class edu.stanford.smi.protege.server.metaproject.impl.PropertyValueImpl
PROTEGE_RMI_TOO_SMALL_TO_COMPRESS - Static variable in class edu.stanford.smi.protege.server.ServerProperties
PROTEGE_RMI_USE_COMPRESSION - Static variable in class edu.stanford.smi.protege.server.ServerProperties
ProtegeError - Exception in edu.stanford.smi.protege.exception
  This is for errors in Protege that are caused by a programmer mistake.
ProtegeError() - Constructor for exception edu.stanford.smi.protege.exception.ProtegeError
ProtegeError(String) - Constructor for exception edu.stanford.smi.protege.exception.ProtegeError
ProtegeError(String, Throwable) - Constructor for exception edu.stanford.smi.protege.exception.ProtegeError
ProtegeError(Throwable) - Constructor for exception edu.stanford.smi.protege.exception.ProtegeError
ProtegeException - Exception in edu.stanford.smi.protege.exception
  A basic exception class for all protege exceptions.
ProtegeException() - Constructor for exception edu.stanford.smi.protege.exception.ProtegeException
ProtegeException(String) - Constructor for exception edu.stanford.smi.protege.exception.ProtegeException
ProtegeException(String, Throwable) - Constructor for exception edu.stanford.smi.protege.exception.ProtegeException
ProtegeException(Throwable) - Constructor for exception edu.stanford.smi.protege.exception.ProtegeException
ProtegeIOException - Exception in edu.stanford.smi.protege.exception
  This exception represents errors accessing the backing store that are not related to problems with the ontology.
ProtegeIOException() - Constructor for exception edu.stanford.smi.protege.exception.ProtegeIOException
ProtegeIOException(String) - Constructor for exception edu.stanford.smi.protege.exception.ProtegeIOException
ProtegeIOException(String, Throwable) - Constructor for exception edu.stanford.smi.protege.exception.ProtegeIOException
ProtegeIOException(Throwable) - Constructor for exception edu.stanford.smi.protege.exception.ProtegeIOException
ProtegeJob - Class in edu.stanford.smi.protege.util
  This class defines a unit of work to be executed in the context of a knowledge base.
ProtegeJob(KnowledgeBase) - Constructor for class edu.stanford.smi.protege.util.ProtegeJob
  The main constructor for ProtegeJob's.
ProtegePlasticTheme - Class in edu.stanford.smi.protege.util
ProtegePlasticTheme() - Constructor for class edu.stanford.smi.protege.util.ProtegePlasticTheme
ProtegePropertiesComponent - Class in edu.stanford.smi.protege.widget
  Graphical component for handling property files.
ProtegePropertiesComponent() - Constructor for class edu.stanford.smi.protege.widget.ProtegePropertiesComponent
ProtegePropertiesComponent(Properties) - Constructor for class edu.stanford.smi.protege.widget.ProtegePropertiesComponent
ProtegePropertiesComponent(File) - Constructor for class edu.stanford.smi.protege.widget.ProtegePropertiesComponent
ProtegePropertiesTab - Class in edu.stanford.smi.protege.widget
  Tab plugin that allows the graphical handling of property files.
ProtegePropertiesTab() - Constructor for class edu.stanford.smi.protege.widget.ProtegePropertiesTab
ProtegeRmiClassLoaderSpi - Class in edu.stanford.smi.protege.server
  TODO Class Comment
ProtegeRmiClassLoaderSpi() - Constructor for class edu.stanford.smi.protege.server.ProtegeRmiClassLoaderSpi
provideQueryResults(Collection<Frame>) - Method in interface edu.stanford.smi.protege.model.query.QueryCallback
provideQueryResults(Collection<Frame>) - Method in class edu.stanford.smi.protege.model.query.QueryCallbackClone
provideQueryResults(Collection<Frame>) - Method in class edu.stanford.smi.protege.model.query.SynchronizeQueryCallback
PUBLIC - Static variable in interface edu.stanford.smi.protege.storage.clips.ParserConstants
  RegularExpression Id.
put(X, Y) - Method in class edu.stanford.smi.protege.util.CacheMap
  Deprecated.

## Q

Query - Interface in edu.stanford.smi.protege.model.query
QueryCallback - Interface in edu.stanford.smi.protege.model.query
QueryCallbackClone - Class in edu.stanford.smi.protege.model.query
QueryCallbackClone(QueryCallback) - Constructor for class edu.stanford.smi.protege.model.query.QueryCallbackClone
QueryLimits - Interface in edu.stanford.smi.protege.model.query
QUESTION_DEFAULT - Static variable in interface edu.stanford.smi.protege.storage.clips.ParserConstants
  RegularExpression Id.
QUESTION_NONE - Static variable in interface edu.stanford.smi.protege.storage.clips.ParserConstants
  RegularExpression Id.
quote(String) - Static method in class edu.stanford.smi.protege.util.StringUtilities

## R

RANGE - Static variable in interface edu.stanford.smi.protege.storage.clips.ParserConstants
  RegularExpression Id.
rangeValueDescription(Cls, Slot) - Method in class edu.stanford.smi.protege.storage.clips.Parser
REACTIVE - Static variable in interface edu.stanford.smi.protege.storage.clips.ParserConstants
  RegularExpression Id.
READ - Static variable in class edu.stanford.smi.protege.server.metaproject.impl.OperationImpl
  Deprecated. - Use constants from `MetaProjectConstants`
read() - Method in interface edu.stanford.smi.protege.server.RemoteSimpleStream
  Read some buffer size count of bytes until it reaches the end of the file at which point it returns null.
read() - Method in class edu.stanford.smi.protege.server.SimpleStream
read() - Method in class edu.stanford.smi.protege.server.socket.deflate.CompressingInputStream
read(byte[], int, int) - Method in class edu.stanford.smi.protege.server.socket.deflate.CompressingInputStream
read(InputStream) - Static method in class edu.stanford.smi.protege.server.socket.deflate.PacketHeader
read() - Method in class edu.stanford.smi.protege.server.socket.MonitoringInputStream
read(byte[], int, int) - Method in class edu.stanford.smi.protege.server.socket.MonitoringInputStream
read() - Method in class edu.stanford.smi.protege.server.socket.SimulateDelayInputStream
read(byte[], int, int) - Method in class edu.stanford.smi.protege.server.socket.SimulateDelayInputStream
read() - Method in class edu.stanford.smi.protege.server.util.FifoReader
READ - Static variable in interface edu.stanford.smi.protege.storage.clips.ParserConstants
  RegularExpression Id.
READ_ONLY - Static variable in interface edu.stanford.smi.protege.storage.clips.ParserConstants
  RegularExpression Id.
READ_ONLY_WIDGET_PROPERTY - Static variable in class edu.stanford.smi.protege.widget.AbstractSlotWidget
READ_WRITE - Static variable in interface edu.stanford.smi.protege.storage.clips.ParserConstants
  RegularExpression Id.
ReadAccessEnforcementFrameStore - Class in edu.stanford.smi.protege.server.framestore
ReadAccessEnforcementFrameStore(ServerFrameStore) - Constructor for class edu.stanford.smi.protege.server.framestore.ReadAccessEnforcementFrameStore
readCache(RemoteSession, Sft) - Method in class edu.stanford.smi.protege.server.update.DeferredOperationCache
readCache(S, V) - Method in interface edu.stanford.smi.protege.util.transaction.cache.Cache
  If the variable var is cached then this returns the cached value.
readCache(S, V) - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.BasicCache
readCache(S, V) - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.CompleteableCache
readCache(S, V) - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.InvalidatableCache
readCache(S, V) - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.ReadCommittedCache
readCache(S, V) - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.ReadUncommittedCache
readCache(S, V) - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.RepeatableReadCache
readChar() - Method in class edu.stanford.smi.protege.storage.clips.SimpleCharStream
  Read a character.
ReadCommittedCache<S,V,R> - Class in edu.stanford.smi.protege.util.transaction.cache.impl
ReadCommittedCache(Cache<S, V, R>) - Constructor for class edu.stanford.smi.protege.util.transaction.cache.impl.ReadCommittedCache
readFully(byte[], int) - Method in class edu.stanford.smi.protege.server.socket.deflate.CompressingInputStream
ReadOnlyFrameStoreHandler - Class in edu.stanford.smi.protege.model.framestore
ReadOnlyFrameStoreHandler() - Constructor for class edu.stanford.smi.protege.model.framestore.ReadOnlyFrameStoreHandler
ReadOnlyWidgetConfigurationPanel - Class in edu.stanford.smi.protege.widget
ReadOnlyWidgetConfigurationPanel(AbstractSlotWidget) - Constructor for class edu.stanford.smi.protege.widget.ReadOnlyWidgetConfigurationPanel
ReadUncommittedCache<S,V,R> - Class in edu.stanford.smi.protege.util.transaction.cache.impl
ReadUncommittedCache(Cache<S, V, R>) - Constructor for class edu.stanford.smi.protege.util.transaction.cache.impl.ReadUncommittedCache
realmain(String[]) - Static method in class edu.stanford.smi.protege.Application
rebuild() - Method in class edu.stanford.smi.protege.ui.RelationshipPane
record(Method, Object[], Object) - Method in class edu.stanford.smi.protege.model.framestore.JournalingFrameStoreHandler
Record - Class in edu.stanford.smi.protege.model.framestore
  TODO Class Comment
Record(Frame, Slot, Facet, boolean, Collection) - Constructor for class edu.stanford.smi.protege.model.framestore.Record
recordCall(RemoteSession) - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
recordCallNoCheck(RemoteSession) - Static method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
recordMainFrameProperties(Frame) - Static method in class edu.stanford.smi.protege.util.ApplicationProperties
redo() - Method in interface edu.stanford.smi.protege.model.CommandManager
redo() - Method in class edu.stanford.smi.protege.model.framestore.undo.UndoFrameStore
REDO_ACTION - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
RedoAction - Class in edu.stanford.smi.protege.action
  Redo the previous undone action.
RedoAction(boolean) - Constructor for class edu.stanford.smi.protege.action.RedoAction
redoIt() - Method in interface edu.stanford.smi.protege.model.framestore.undo.Command
redoIt() - Method in class edu.stanford.smi.protege.model.framestore.undo.MacroCommand
Reference - Interface in edu.stanford.smi.protege.model
  A reference to a frame, slot, facet binding.
reference() - Method in class edu.stanford.smi.protege.storage.database.pool.ConnectionPool
ReferenceComparator - Class in edu.stanford.smi.protege.ui
  Comparator for instance of the `Reference` class.
ReferenceComparator() - Constructor for class edu.stanford.smi.protege.ui.ReferenceComparator
ReferenceImpl - Class in edu.stanford.smi.protege.model.framestore
ReferenceImpl(Frame, Slot, Facet, boolean) - Constructor for class edu.stanford.smi.protege.model.framestore.ReferenceImpl
ReferenceImpl() - Constructor for class edu.stanford.smi.protege.model.framestore.ReferenceImpl
ReferenceNode - Class in edu.stanford.smi.protege.ui
  Tree node that models a "reference" between two frames.
ReferenceNode(LazyTreeNode, Frame, Slot) - Constructor for class edu.stanford.smi.protege.ui.ReferenceNode
ReferenceRoot - Class in edu.stanford.smi.protege.ui
  Tree Root for "references" between two frames.
ReferenceRoot(KnowledgeBase, Frame, Slot) - Constructor for class edu.stanford.smi.protege.ui.ReferenceRoot
ReferencersAction - Class in edu.stanford.smi.protege.action
  Description of the class
ReferencersAction(Selectable) - Constructor for class edu.stanford.smi.protege.action.ReferencersAction
ReferencersAction(ResourceKey, Selectable) - Constructor for class edu.stanford.smi.protege.action.ReferencersAction
ReferencersPanel - Class in edu.stanford.smi.protege.ui
  Panel to display instance of the `Reference` class.
ReferencersPanel(Instance) - Constructor for class edu.stanford.smi.protege.ui.ReferencersPanel
ReferencersPanel(Project, Instance) - Constructor for class edu.stanford.smi.protege.ui.ReferencersPanel
  Deprecated. Use constructor without Project argument
refresh() - Method in class edu.stanford.smi.protege.server.admin.AbstractRefreshableServerPanel
refresh() - Method in class edu.stanford.smi.protege.server.admin.ProjectsServerPanel
refresh() - Method in class edu.stanford.smi.protege.server.admin.SessionServerPanel
register(RemoteSession) - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
register(RemoteSession) - Method in interface edu.stanford.smi.protege.server.RemoteServerProject
register(RemoteSession) - Method in class edu.stanford.smi.protege.server.ServerProject
registerConfigureTab(String, String) - Static method in class edu.stanford.smi.protege.ui.ConfigureProjectPanel
RegisterUserServerPanel - Class in edu.stanford.smi.protege.server
RegisterUserServerPanel(String) - Constructor for class edu.stanford.smi.protege.server.RegisterUserServerPanel
registerWindow(Window) - Static method in class edu.stanford.smi.protege.util.ComponentUtilities
Registration - Class in edu.stanford.smi.protege.server.framestore
Registration(FifoWriter<AbstractEvent>) - Constructor for class edu.stanford.smi.protege.server.framestore.Registration
REGISTRY_LOCAL_PORT - Static variable in class edu.stanford.smi.protege.server.ServerProperties
REGISTRY_PORT - Static variable in class edu.stanford.smi.protege.server.ServerProperties
REGISTRY_PORT - Static variable in class edu.stanford.smi.protege.server.socket.RmiSocketFactory
ReInit(InputStream) - Method in class edu.stanford.smi.protege.storage.clips.Parser
  Reinitialise.
ReInit(InputStream, String) - Method in class edu.stanford.smi.protege.storage.clips.Parser
  Reinitialise.
ReInit(Reader) - Method in class edu.stanford.smi.protege.storage.clips.Parser
  Reinitialise.
ReInit(ParserTokenManager) - Method in class edu.stanford.smi.protege.storage.clips.Parser
  Reinitialise.
ReInit(SimpleCharStream) - Method in class edu.stanford.smi.protege.storage.clips.ParserTokenManager
  Reinitialise parser.
ReInit(SimpleCharStream, int) - Method in class edu.stanford.smi.protege.storage.clips.ParserTokenManager
  Reinitialise parser.
ReInit(Reader, int, int, int) - Method in class edu.stanford.smi.protege.storage.clips.SimpleCharStream
  Reinitialise.
ReInit(Reader, int, int) - Method in class edu.stanford.smi.protege.storage.clips.SimpleCharStream
  Reinitialise.
ReInit(Reader) - Method in class edu.stanford.smi.protege.storage.clips.SimpleCharStream
  Reinitialise.
ReInit(InputStream, String, int, int, int) - Method in class edu.stanford.smi.protege.storage.clips.SimpleCharStream
  Reinitialise.
ReInit(InputStream, int, int, int) - Method in class edu.stanford.smi.protege.storage.clips.SimpleCharStream
  Reinitialise.
ReInit(InputStream, String) - Method in class edu.stanford.smi.protege.storage.clips.SimpleCharStream
  Reinitialise.
ReInit(InputStream) - Method in class edu.stanford.smi.protege.storage.clips.SimpleCharStream
  Reinitialise.
ReInit(InputStream, String, int, int) - Method in class edu.stanford.smi.protege.storage.clips.SimpleCharStream
  Reinitialise.
ReInit(InputStream, int, int) - Method in class edu.stanford.smi.protege.storage.clips.SimpleCharStream
  Reinitialise.
reinitialize() - Method in class edu.stanford.smi.protege.model.framestore.ArgumentCheckingFrameStore
reinitialize() - Method in class edu.stanford.smi.protege.model.framestore.ChangeMonitorFrameStore
reinitialize() - Method in class edu.stanford.smi.protege.model.framestore.ClosureCachingBasicFrameStore
reinitialize() - Method in class edu.stanford.smi.protege.model.framestore.EventDispatchFrameStore
reinitialize() - Method in class edu.stanford.smi.protege.model.framestore.EventGeneratorFrameStore
reinitialize() - Method in interface edu.stanford.smi.protege.model.framestore.FrameStore
reinitialize() - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreAdapter
reinitialize() - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreManager
reinitialize() - Method in class edu.stanford.smi.protege.model.framestore.ImmutableNamesNarrowFrameStore
reinitialize() - Method in class edu.stanford.smi.protege.model.framestore.InMemoryFrameDb
reinitialize() - Method in class edu.stanford.smi.protege.model.framestore.MergingNarrowFrameStore
reinitialize() - Method in class edu.stanford.smi.protege.model.framestore.ModificationRecordFrameStore
reinitialize() - Method in interface edu.stanford.smi.protege.model.framestore.NarrowFrameStore
reinitialize() - Method in class edu.stanford.smi.protege.model.framestore.PlaceHolderNarrowFrameStore
reinitialize() - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
reinitialize() - Method in class edu.stanford.smi.protege.model.framestore.TemplateFrameStore
reinitialize() - Method in class edu.stanford.smi.protege.model.framestore.undo.UndoFrameStore
reinitialize() - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
reinitialize() - Method in interface edu.stanford.smi.protege.server.RemoteServer
reinitialize() - Method in class edu.stanford.smi.protege.server.Server
reinitialize() - Method in class edu.stanford.smi.protege.storage.database.DefaultDatabaseFrameDb
reinitialize() - Method in class edu.stanford.smi.protege.storage.database.IdleConnectionNarrowFrameStore
reinitialize() - Method in class edu.stanford.smi.protege.storage.database.ValueCachingNarrowFrameStore
RELATION - Static variable in interface edu.stanford.smi.protege.model.Model.Cls
RELATION - Static variable in interface edu.stanford.smi.protege.model.Model.ClsID
RelationshipPane - Class in edu.stanford.smi.protege.ui
  A panel to display any "relationship between frames.
RelationshipPane(Action) - Constructor for class edu.stanford.smi.protege.ui.RelationshipPane
relativize(URI, URI) - Static method in class edu.stanford.smi.protege.util.URIUtilities
relayout() - Method in interface edu.stanford.smi.protege.widget.ClsWidget
relayout() - Method in class edu.stanford.smi.protege.widget.FormWidget
relayout() - Method in class edu.stanford.smi.protege.widget.UglyClsWidget
reload() - Method in class edu.stanford.smi.protege.ui.DirectInstancesList
reload(boolean) - Method in class edu.stanford.smi.protege.ui.ProjectView
  This method will reload all the tabs in the user interface.
reload(TabWidget) - Method in class edu.stanford.smi.protege.ui.ProjectView
  Reloads the tab widget given as argument.
  First, it will dispose the existing tab widget, and then it will create a new instance of the tab (it will call the constructor and initialize()), and it will insert it in the same place in the tabbed pane.
reload() - Method in class edu.stanford.smi.protege.ui.ViewSelector
reload() - Method in class edu.stanford.smi.protege.util.LazyTreeNode
reload(Object) - Method in class edu.stanford.smi.protege.util.LazyTreeNode
reload() - Method in class edu.stanford.smi.protege.widget.AbstractTableWidget
reload() - Method in class edu.stanford.smi.protege.widget.AbstractTreeWidget
reload() - Method in class edu.stanford.smi.protege.widget.FormWidget
RELOAD_PROJECT_FAILED_DIALOG_TITLE - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
reloadAll() - Method in class edu.stanford.smi.protege.ui.ProjectView
reloadAllTabsExcept(TabWidget) - Method in class edu.stanford.smi.protege.ui.ProjectView
  It will reload (i.e.
reloadUI(boolean) - Method in class edu.stanford.smi.protege.ui.ProjectManager
REMOTE_CLIENT_PRELOAD - Static variable in class edu.stanford.smi.protege.util.ApplicationProperties
REMOTE_CONNECT_FAILED_DIALOG_TEXT - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
REMOTE_HOST_CONNECT_DIALOG_TITLE - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
REMOTE_PROJECT_SELECT_DIALOG_TITLE - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
REMOTE_SESSION_CREATE_FAILED_DIALOG_TEXT - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
REMOTE_SESSION_CREATE_FAILED_DIALOG_TITLE - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
RemoteClientFrameStore - Class in edu.stanford.smi.protege.server.framestore
RemoteClientFrameStore(String, String, String, String, KnowledgeBase, boolean) - Constructor for class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
RemoteClientFrameStore(RemoteServer, RemoteServerFrameStore, RemoteSession, KnowledgeBase, boolean) - Constructor for class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
RemoteClientFrameStore.RemoteClientStatsImpl - Class in edu.stanford.smi.protege.server.framestore
RemoteClientFrameStore.RemoteClientStatsImpl() - Constructor for class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore.RemoteClientStatsImpl
RemoteClientInvocationHandler - Class in edu.stanford.smi.protege.server.narrowframestore
RemoteClientInvocationHandler(KnowledgeBase, RemoteServerNarrowFrameStore, RemoteSession) - Constructor for class edu.stanford.smi.protege.server.narrowframestore.RemoteClientInvocationHandler
RemoteClientProject - Class in edu.stanford.smi.protege.server
RemoteClientProject(RemoteServer, RemoteServerProject, RemoteSession, boolean) - Constructor for class edu.stanford.smi.protege.server.RemoteClientProject
RemoteClientStats - Interface in edu.stanford.smi.protege.server.framestore
RemoteJob - Class in edu.stanford.smi.protege.util
RemoteJob() - Constructor for class edu.stanford.smi.protege.util.RemoteJob
RemoteProjectManager - Class in edu.stanford.smi.protege.server
RemoteProjectManager() - Constructor for class edu.stanford.smi.protege.server.RemoteProjectManager
RemoteProjectUtil - Class in edu.stanford.smi.protege.server.util
RemoteProjectUtil() - Constructor for class edu.stanford.smi.protege.server.util.RemoteProjectUtil
RemoteResponse<X> - Class in edu.stanford.smi.protege.server.update
RemoteResponse(X, List<ValueUpdate>) - Constructor for class edu.stanford.smi.protege.server.update.RemoteResponse
RemoteServer - Interface in edu.stanford.smi.protege.server
RemoteServerFrameStore - Interface in edu.stanford.smi.protege.server.framestore
RemoteServerNarrowFrameStore - Interface in edu.stanford.smi.protege.server.narrowframestore
  A variation of the NarrowFrameStore interface that throws the RemoteException.
RemoteServerProject - Interface in edu.stanford.smi.protege.server
RemoteSession - Interface in edu.stanford.smi.protege.server
RemoteSimpleStream - Interface in edu.stanford.smi.protege.server
  This interface is used to transfer the project (.pprj) file from the server to the client.
remove(Frame, Slot, Facet, boolean) - Method in interface edu.stanford.smi.protege.model.Storage
remove(int) - Method in class edu.stanford.smi.protege.util.HashList
  Deprecated. Removes the element at the specified position in this list.
remove(Object) - Method in class edu.stanford.smi.protege.util.HashList
  Deprecated. Removes the first occurrence of the specified element in this list.
remove(Object, EventListener) - Method in class edu.stanford.smi.protege.util.ListenerCollection
remove(Object, EventListener) - Method in class edu.stanford.smi.protege.util.ListenerMap
remove(String) - Method in class edu.stanford.smi.protege.util.PropertyList
RemoveAction - Class in edu.stanford.smi.protege.util
  An action to remove an item.
RemoveAction(ResourceKey, Selectable) - Constructor for class edu.stanford.smi.protege.util.RemoveAction
RemoveAction(String, Selectable) - Constructor for class edu.stanford.smi.protege.util.RemoveAction
RemoveAction(String, Selectable, Icon) - Constructor for class edu.stanford.smi.protege.util.RemoveAction
RemoveAction(String, String, Selectable, Icon) - Constructor for class edu.stanford.smi.protege.util.RemoveAction
removeActionListener(ActionListener) - Method in class edu.stanford.smi.protege.util.IntegerField
removeAllHeaderButtons() - Method in class edu.stanford.smi.protege.util.LabeledComponent
removeAllItems() - Method in class edu.stanford.smi.protege.widget.AbstractListWidget
removeAllListeners(Object) - Method in class edu.stanford.smi.protege.util.ListenerCollection
removeAllListeners(Object) - Method in class edu.stanford.smi.protege.util.ListenerList
removeAllListeners(Object) - Method in class edu.stanford.smi.protege.util.ListenerMap
removeAllQuotes(String) - Static method in class edu.stanford.smi.protege.util.StringUtilities
removeApplyTo(String) - Static method in class edu.stanford.smi.protege.model.Transaction
removeChangeListener(ChangeListener) - Method in interface edu.stanford.smi.protege.model.CommandManager
removeChangeListener(ChangeListener) - Method in class edu.stanford.smi.protege.model.framestore.undo.UndoFrameStore
removeChangeListener(ChangeListener) - Method in class edu.stanford.smi.protege.ui.ProjectView
removeChild(X, X) - Method in class edu.stanford.smi.protege.util.Tree
removeClsListener(ClsListener) - Method in interface edu.stanford.smi.protege.model.Cls
removeClsListener(ClsListener) - Method in class edu.stanford.smi.protege.model.DefaultCls
removeClsListener(Cls, ClsListener) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
removeClsListener(ClsListener) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
removeClsListener(Cls, ClsListener) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
removeClsListener(ClsListener) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
removeCurrentWidgets() - Method in class edu.stanford.smi.protege.ui.InstanceDisplay
removeCustomizations() - Method in interface edu.stanford.smi.protege.widget.ClsWidget
removeCustomizations() - Method in class edu.stanford.smi.protege.widget.FormWidget
removeCustomizations() - Method in class edu.stanford.smi.protege.widget.UglyClsWidget
removeDeletionHook(KnowledgeBase, DeletionHook) - Static method in class edu.stanford.smi.protege.util.DeletionHookUtil
removeDirectOwnSlotValue(Frame, Slot, Object) - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
removeDirectSuperclass(Cls) - Method in interface edu.stanford.smi.protege.model.Cls
removeDirectSuperclass(Cls) - Method in class edu.stanford.smi.protege.model.DefaultCls
removeDirectSuperclass(Cls, Cls) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
removeDirectSuperclass(Cls, Cls) - Method in class edu.stanford.smi.protege.model.framestore.ArgumentCheckingFrameStore
removeDirectSuperclass(Cls, Cls) - Method in class edu.stanford.smi.protege.model.framestore.ChangeMonitorFrameStore
removeDirectSuperclass(Cls, Cls) - Method in class edu.stanford.smi.protege.model.framestore.DeleteSimplificationFrameStore
removeDirectSuperclass(Cls, Cls) - Method in class edu.stanford.smi.protege.model.framestore.EventDispatchFrameStore
removeDirectSuperclass(Cls, Cls) - Method in class edu.stanford.smi.protege.model.framestore.EventGeneratorFrameStore
removeDirectSuperclass(Cls, Cls) - Method in interface edu.stanford.smi.protege.model.framestore.FrameStore
removeDirectSuperclass(Cls, Cls) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreAdapter
removeDirectSuperclass(Cls, Cls) - Method in class edu.stanford.smi.protege.model.framestore.ModificationRecordFrameStore
removeDirectSuperclass(Cls, Cls) - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
removeDirectSuperclass(Cls, Cls) - Method in class edu.stanford.smi.protege.model.framestore.TemplateFrameStore
removeDirectSuperclass(Cls, Cls) - Method in class edu.stanford.smi.protege.model.framestore.undo.UndoFrameStore
removeDirectSuperclass(Cls, Cls) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
removeDirectSuperclass(Cls, Cls) - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
removeDirectSuperclass(Cls, Cls, RemoteSession) - Method in interface edu.stanford.smi.protege.server.framestore.RemoteServerFrameStore
removeDirectSuperclass(Cls, Cls, RemoteSession) - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
removeDirectSuperslot(Slot, Slot) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
removeDirectSuperslot(Slot) - Method in class edu.stanford.smi.protege.model.DefaultSlot
removeDirectSuperslot(Slot, Slot) - Method in class edu.stanford.smi.protege.model.framestore.ArgumentCheckingFrameStore
removeDirectSuperslot(Slot, Slot) - Method in class edu.stanford.smi.protege.model.framestore.ChangeMonitorFrameStore
removeDirectSuperslot(Slot, Slot) - Method in class edu.stanford.smi.protege.model.framestore.DeleteSimplificationFrameStore
removeDirectSuperslot(Slot, Slot) - Method in class edu.stanford.smi.protege.model.framestore.EventDispatchFrameStore
removeDirectSuperslot(Slot, Slot) - Method in class edu.stanford.smi.protege.model.framestore.EventGeneratorFrameStore
removeDirectSuperslot(Slot, Slot) - Method in interface edu.stanford.smi.protege.model.framestore.FrameStore
removeDirectSuperslot(Slot, Slot) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreAdapter
removeDirectSuperslot(Slot, Slot) - Method in class edu.stanford.smi.protege.model.framestore.ModificationRecordFrameStore
removeDirectSuperslot(Slot, Slot) - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
removeDirectSuperslot(Slot, Slot) - Method in class edu.stanford.smi.protege.model.framestore.TemplateFrameStore
removeDirectSuperslot(Slot, Slot) - Method in class edu.stanford.smi.protege.model.framestore.undo.UndoFrameStore
removeDirectSuperslot(Slot, Slot) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
removeDirectSuperslot(Slot) - Method in interface edu.stanford.smi.protege.model.Slot
removeDirectSuperslot(Slot, Slot) - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
removeDirectSuperslot(Slot, Slot, RemoteSession) - Method in interface edu.stanford.smi.protege.server.framestore.RemoteServerFrameStore
removeDirectSuperslot(Slot, Slot, RemoteSession) - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
removeDirectTemplateFacetOverrides(Cls, Slot) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
removeDirectTemplateFacetOverrides(Cls, Slot) - Method in class edu.stanford.smi.protege.model.framestore.ArgumentCheckingFrameStore
removeDirectTemplateFacetOverrides(Cls, Slot) - Method in class edu.stanford.smi.protege.model.framestore.ChangeMonitorFrameStore
removeDirectTemplateFacetOverrides(Cls, Slot) - Method in class edu.stanford.smi.protege.model.framestore.EventDispatchFrameStore
removeDirectTemplateFacetOverrides(Cls, Slot) - Method in class edu.stanford.smi.protege.model.framestore.EventGeneratorFrameStore
removeDirectTemplateFacetOverrides(Cls, Slot) - Method in interface edu.stanford.smi.protege.model.framestore.FrameStore
removeDirectTemplateFacetOverrides(Cls, Slot) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreAdapter
removeDirectTemplateFacetOverrides(Cls, Slot) - Method in class edu.stanford.smi.protege.model.framestore.ModificationRecordFrameStore
removeDirectTemplateFacetOverrides(Cls, Slot) - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
removeDirectTemplateFacetOverrides(Cls, Slot) - Method in class edu.stanford.smi.protege.model.framestore.TemplateFrameStore
removeDirectTemplateFacetOverrides(Cls, Slot) - Method in class edu.stanford.smi.protege.model.framestore.undo.UndoFrameStore
removeDirectTemplateFacetOverrides(Cls, Slot) - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
removeDirectTemplateFacetOverrides(Cls, Slot, RemoteSession) - Method in interface edu.stanford.smi.protege.server.framestore.RemoteServerFrameStore
removeDirectTemplateFacetOverrides(Cls, Slot, RemoteSession) - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
removeDirectTemplateSlot(Slot) - Method in interface edu.stanford.smi.protege.model.Cls
removeDirectTemplateSlot(Slot) - Method in class edu.stanford.smi.protege.model.DefaultCls
removeDirectTemplateSlot(Cls, Slot) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
removeDirectTemplateSlot(Cls, Slot) - Method in class edu.stanford.smi.protege.model.framestore.ArgumentCheckingFrameStore
removeDirectTemplateSlot(Cls, Slot) - Method in class edu.stanford.smi.protege.model.framestore.ChangeMonitorFrameStore
removeDirectTemplateSlot(Cls, Slot) - Method in class edu.stanford.smi.protege.model.framestore.DeleteSimplificationFrameStore
removeDirectTemplateSlot(Cls, Slot) - Method in class edu.stanford.smi.protege.model.framestore.EventDispatchFrameStore
removeDirectTemplateSlot(Cls, Slot) - Method in class edu.stanford.smi.protege.model.framestore.EventGeneratorFrameStore
removeDirectTemplateSlot(Cls, Slot) - Method in interface edu.stanford.smi.protege.model.framestore.FrameStore
removeDirectTemplateSlot(Cls, Slot) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreAdapter
removeDirectTemplateSlot(Cls, Slot) - Method in class edu.stanford.smi.protege.model.framestore.ModificationRecordFrameStore
removeDirectTemplateSlot(Cls, Slot) - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
removeDirectTemplateSlot(Cls, Slot) - Method in class edu.stanford.smi.protege.model.framestore.TemplateFrameStore
removeDirectTemplateSlot(Cls, Slot) - Method in class edu.stanford.smi.protege.model.framestore.undo.UndoFrameStore
removeDirectTemplateSlot(Cls, Slot) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
removeDirectTemplateSlot(Cls, Slot) - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
removeDirectTemplateSlot(Cls, Slot, RemoteSession) - Method in interface edu.stanford.smi.protege.server.framestore.RemoteServerFrameStore
removeDirectTemplateSlot(Cls, Slot, RemoteSession) - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
removeDirectType(Cls) - Method in class edu.stanford.smi.protege.model.DefaultInstance
removeDirectType(Instance, Cls) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
removeDirectType(Instance, Cls) - Method in class edu.stanford.smi.protege.model.framestore.ArgumentCheckingFrameStore
removeDirectType(Instance, Cls) - Method in class edu.stanford.smi.protege.model.framestore.ChangeMonitorFrameStore
removeDirectType(Instance, Cls) - Method in class edu.stanford.smi.protege.model.framestore.EventDispatchFrameStore
removeDirectType(Instance, Cls) - Method in class edu.stanford.smi.protege.model.framestore.EventGeneratorFrameStore
removeDirectType(Instance, Cls) - Method in interface edu.stanford.smi.protege.model.framestore.FrameStore
removeDirectType(Instance, Cls) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreAdapter
removeDirectType(Instance, Cls) - Method in class edu.stanford.smi.protege.model.framestore.ModificationRecordFrameStore
removeDirectType(Instance, Cls) - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
removeDirectType(Instance, Cls) - Method in class edu.stanford.smi.protege.model.framestore.TemplateFrameStore
removeDirectType(Instance, Cls) - Method in class edu.stanford.smi.protege.model.framestore.undo.UndoFrameStore
removeDirectType(Cls) - Method in interface edu.stanford.smi.protege.model.Instance
removeDirectType(Instance, Cls) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
removeDirectType(Instance, Cls) - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
removeDirectType(Instance, Cls, RemoteSession) - Method in interface edu.stanford.smi.protege.server.framestore.RemoteServerFrameStore
removeDirectType(Instance, Cls, RemoteSession) - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
removeDirectTypes(Instance, Collection) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
removeDisplayedInstance() - Method in class edu.stanford.smi.protege.widget.ClsFieldWidget
removeDisplayedInstance() - Method in class edu.stanford.smi.protege.widget.InstanceFieldWidget
removeFacetListener(FacetListener) - Method in class edu.stanford.smi.protege.model.DefaultFacet
removeFacetListener(Facet, FacetListener) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
removeFacetListener(FacetListener) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
removeFacetListener(FacetListener) - Method in interface edu.stanford.smi.protege.model.Facet
removeFacetListener(FacetListener) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
removeFacetListener(Facet, FacetListener) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
removeFirst(Collection<X>) - Static method in class edu.stanford.smi.protege.util.CollectionUtilities
removeFirst() - Method in class edu.stanford.smi.protege.util.HashList
  Deprecated. Removes and returns the first element from this list.
removeFrame(Frame) - Method in interface edu.stanford.smi.protege.model.Storage
removeFrame(FrameID) - Method in class edu.stanford.smi.protege.model.SystemFrames
removeFrameListener(FrameListener) - Method in class edu.stanford.smi.protege.model.DefaultFrame
removeFrameListener(Frame, FrameListener) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
removeFrameListener(FrameListener) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
removeFrameListener(FrameListener) - Method in interface edu.stanford.smi.protege.model.Frame
removeFrameListener(Frame, FrameListener) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
removeFrameListener(FrameListener) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
removeFrameStore(FrameStore) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
removeFrameStore(FrameStore) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreManager
removeFrameStore(NarrowFrameStore) - Method in class edu.stanford.smi.protege.model.framestore.MergingNarrowFrameStore
removeFrameStore(FrameStore) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
removeHeaderButton(int) - Method in class edu.stanford.smi.protege.util.LabeledComponent
removeHook(DeletionHook) - Method in class edu.stanford.smi.protege.model.framestore.DeletionHookFrameStore
removeIncludedProjectReferences() - Method in class edu.stanford.smi.protege.model.Project
removeInCollection(PolicyControlledObjectCollection) - Method in class edu.stanford.smi.protege.server.metaproject.impl.PolicyControlledObjectImpl
removeInCollection(PolicyControlledObjectCollection) - Method in interface edu.stanford.smi.protege.server.metaproject.PolicyControlledObject
removeInstanceListener(InstanceListener) - Method in class edu.stanford.smi.protege.model.DefaultInstance
removeInstanceListener(Instance, InstanceListener) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
removeInstanceListener(InstanceListener) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
removeInstanceListener(InstanceListener) - Method in interface edu.stanford.smi.protege.model.Instance
removeInstanceListener(Instance, InstanceListener) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
removeInstanceListener(InstanceListener) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
removeItem(Object) - Method in class edu.stanford.smi.protege.widget.AbstractListWidget
removeItems(Collection) - Method in class edu.stanford.smi.protege.widget.AbstractListWidget
removeJavaLoadPackage(String) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
removeJavaLoadPackage(String) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
removeJavaPackage(String) - Method in interface edu.stanford.smi.protege.model.FrameFactory
removeJavaPackage(String) - Method in class edu.stanford.smi.protege.model.framestore.DefaultFrameFactory
removeJavaPackageName(String) - Method in class edu.stanford.smi.protege.model.Project
removeKey(X) - Method in class edu.stanford.smi.protege.util.ArrayListMultiMap
removeKey(X) - Method in class edu.stanford.smi.protege.util.MultiMap
removeKey(X) - Method in class edu.stanford.smi.protege.util.SetMultiMap
removeKnowledgeBaseListener(KnowledgeBaseListener) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
removeKnowledgeBaseListener(KnowledgeBaseListener) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
removeLast() - Method in class edu.stanford.smi.protege.util.HashList
  Deprecated. Removes and returns the last element from this list.
removeLayoutComponent(Component) - Method in class edu.stanford.smi.protege.util.ResizingLayout
removeListener(Class<?>, Object, EventListener) - Method in class edu.stanford.smi.protege.model.framestore.EventDispatchFrameStore
removeListener(Class, Object, EventListener) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreManager
removeListener() - Method in class edu.stanford.smi.protege.widget.ClsListWidget
removeListener(Collection) - Method in class edu.stanford.smi.protege.widget.InstanceListWidget
removeListValue(JList, Object) - Static method in class edu.stanford.smi.protege.util.ComponentUtilities
removeListValues(JList, Collection) - Static method in class edu.stanford.smi.protege.util.ComponentUtilities
removeMainWindowToolBarButton(JButton) - Method in class edu.stanford.smi.protege.widget.AbstractTabWidget
removeMenuItem(JMenu, String) - Static method in class edu.stanford.smi.protege.util.ComponentUtilities
removeNode(X) - Method in class edu.stanford.smi.protege.util.Tree
removeOwnSlotValue(Slot, Object) - Method in class edu.stanford.smi.protege.model.DefaultFrame
removeOwnSlotValue(Frame, Slot, Object) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
  Deprecated. use #setDirectOwnSlotValues
removeOwnSlotValue(Slot, Object) - Method in interface edu.stanford.smi.protege.model.Frame
  Remove _all_ occurrences of this value.
removeOwnSlotValue(Frame, Slot, Object) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
removeOwnSlotValue(Frame, String, Object) - Static method in class edu.stanford.smi.protege.model.ModelUtilities
removeProjectListener(ProjectListener) - Method in class edu.stanford.smi.protege.model.Project
removeProjectViewListener(ProjectViewListener) - Method in class edu.stanford.smi.protege.ui.ProjectView
removePropertyValue(PropertyValue) - Method in class edu.stanford.smi.protege.server.metaproject.impl.WrappedProtegeInstanceWithPropsImpl
removePropertyValue(String, String) - Method in class edu.stanford.smi.protege.server.metaproject.impl.WrappedProtegeInstanceWithPropsImpl
removePropertyValue(PropertyValue) - Method in interface edu.stanford.smi.protege.server.metaproject.PolicyControlledObject
removePropertyValue(String, String) - Method in interface edu.stanford.smi.protege.server.metaproject.PolicyControlledObject
removePropertyValue(PropertyValue) - Method in interface edu.stanford.smi.protege.server.metaproject.User
removePropertyValue(String, String) - Method in interface edu.stanford.smi.protege.server.metaproject.User
removeRecord(Map<X, Set<Record>>, Object, Record) - Static method in class edu.stanford.smi.protege.model.framestore.InMemoryFrameDb
removeRequest(WorkInfo) - Method in class edu.stanford.smi.protege.server.framestore.background.FrameCalculator
removeSelection() - Method in class edu.stanford.smi.protege.ui.SubclassPane
removeSelection() - Method in class edu.stanford.smi.protege.ui.SubslotPane
removeSelection(JTree) - Static method in class edu.stanford.smi.protege.util.ComponentUtilities
removeSelectionListener(SelectionListener) - Method in class edu.stanford.smi.protege.util.AbstractSelectableComponent
removeSelectionListener(SelectionListener) - Method in interface edu.stanford.smi.protege.util.Selectable
removeSelectionListener(SelectionListener) - Method in class edu.stanford.smi.protege.util.SelectableContainer
removeSelectionListener(SelectionListener) - Method in class edu.stanford.smi.protege.util.SelectableList
removeSelectionListener(SelectionListener) - Method in class edu.stanford.smi.protege.util.SelectableTable
removeSelectionListener(SelectionListener) - Method in class edu.stanford.smi.protege.util.SelectableTree
removeSelectionListener(SelectionListener) - Method in class edu.stanford.smi.protege.widget.AbstractWidget
removeServerProjectListener(ServerProjectListener) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
removeServerProjectListener(ServerProjectListener) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
removeSingleValue(Frame, Slot, Facet, boolean, Object) - Method in interface edu.stanford.smi.protege.model.Storage
  remove a single occurance of value from the slot/facet value
removeSlotListener(Slot, SlotListener) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
removeSlotListener(SlotListener) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
removeSlotListener(SlotListener) - Method in class edu.stanford.smi.protege.model.DefaultSlot
removeSlotListener(Slot, SlotListener) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
removeSlotListener(SlotListener) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
removeSlotListener(SlotListener) - Method in interface edu.stanford.smi.protege.model.Slot
removeSlotValue(Slot, Object) - Method in class edu.stanford.smi.protege.code.generator.wrapping.AbstractWrappedInstance
removeSlotValue(MetaProjectImpl.SlotEnum, Object) - Method in class edu.stanford.smi.protege.server.metaproject.impl.WrappedProtegeInstanceImpl
removeTemplateFacetOverrides(Slot) - Method in interface edu.stanford.smi.protege.model.Cls
removeTemplateFacetOverrides(Slot) - Method in class edu.stanford.smi.protege.model.DefaultCls
removeTemplateFacetOverrides(Cls, Slot) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
  Deprecated. renamed to #removeDirectTemplateFacetOverrides
removeTemplateFacetOverrides(Cls, Slot) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
removeTransactionListener(TransactionListener) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
removeTransactionListener(TransactionListener) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
removeUnreferencedInstances(KnowledgeBase) - Static method in class edu.stanford.smi.protege.model.Project
removeUpdate(DocumentEvent) - Method in class edu.stanford.smi.protege.util.DocumentChangedListener
removeUserToolBar(JToolBar) - Method in class edu.stanford.smi.protege.ui.ProjectManager
removeUserToolBar(JToolBar) - Method in class edu.stanford.smi.protege.widget.AbstractTabWidget
removeValue(Frame, Slot, Facet, boolean, Object) - Method in class edu.stanford.smi.protege.model.framestore.ClosureCachingBasicFrameStore
removeValue(Frame, Slot, Facet, boolean, Object) - Method in class edu.stanford.smi.protege.model.framestore.ImmutableNamesNarrowFrameStore
removeValue(Frame, Slot, Facet, boolean, Object) - Method in class edu.stanford.smi.protege.model.framestore.InMemoryFrameDb
removeValue(Frame, Slot, Facet, boolean, Object) - Method in class edu.stanford.smi.protege.model.framestore.MergingNarrowFrameStore
removeValue(Frame, Slot, Facet, boolean, Object) - Method in interface edu.stanford.smi.protege.model.framestore.NarrowFrameStore
removeValue(Frame, Slot, Facet, boolean, Object) - Method in class edu.stanford.smi.protege.model.framestore.PlaceHolderNarrowFrameStore
removeValue(Object) - Method in class edu.stanford.smi.protege.model.framestore.Record
removeValue(Frame, Slot, Facet, boolean, Object, RemoteSession) - Method in interface edu.stanford.smi.protege.server.narrowframestore.RemoteServerNarrowFrameStore
removeValue(Frame, Slot, Facet, boolean, Object, RemoteSession) - Method in class edu.stanford.smi.protege.server.narrowframestore.ServerNarrowFrameStore
removeValue(Frame, Slot, Facet, boolean, Object) - Method in interface edu.stanford.smi.protege.storage.database.DatabaseFrameDb
removeValue(Frame, Slot, Facet, boolean, Object) - Method in class edu.stanford.smi.protege.storage.database.DefaultDatabaseFrameDb
removeValue(Frame, Slot, Facet, boolean, Object) - Method in class edu.stanford.smi.protege.storage.database.IdleConnectionNarrowFrameStore
removeValue(Frame, Slot, Facet, boolean, Object) - Method in class edu.stanford.smi.protege.storage.database.ValueCachingNarrowFrameStore
removeValue(X, Y) - Method in class edu.stanford.smi.protege.util.MultiMap
removeValue(Object) - Method in class edu.stanford.smi.protege.util.SimpleListModel
removeValues(Slot, Facet, boolean, Cls) - Method in interface edu.stanford.smi.protege.model.Storage
removeValues(Frame, Slot, Facet, boolean) - Method in class edu.stanford.smi.protege.storage.database.DefaultDatabaseFrameDb
removeValues(X, Collection<Y>) - Method in class edu.stanford.smi.protege.util.MultiMap
removeValues(Collection) - Method in class edu.stanford.smi.protege.util.SimpleListModel
removeWidgetDescriptor(String) - Method in class edu.stanford.smi.protege.widget.FormWidget
removeWidgetListener(WidgetListener) - Method in class edu.stanford.smi.protege.widget.AbstractClsWidget
removeWidgetListener(WidgetListener) - Method in interface edu.stanford.smi.protege.widget.ClsWidget
rename(String) - Method in interface edu.stanford.smi.protege.model.Cls
rename(String) - Method in class edu.stanford.smi.protege.model.DefaultCls
rename(String) - Method in class edu.stanford.smi.protege.model.DefaultFacet
rename(String) - Method in class edu.stanford.smi.protege.model.DefaultFrame
rename(Frame, String) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
rename(String) - Method in class edu.stanford.smi.protege.model.DefaultSimpleInstance
rename(String) - Method in class edu.stanford.smi.protege.model.DefaultSlot
rename(String) - Method in interface edu.stanford.smi.protege.model.Facet
rename(String) - Method in interface edu.stanford.smi.protege.model.Frame
  This is as close as we come to renaming a frame.
rename(Frame, String) - Method in interface edu.stanford.smi.protege.model.FrameFactory
rename(Frame, String) - Method in class edu.stanford.smi.protege.model.framestore.DefaultFrameFactory
rename(Frame, String) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
rename(String) - Method in interface edu.stanford.smi.protege.model.Slot
repaint() - Static method in class edu.stanford.smi.protege.Application
repaint() - Method in class edu.stanford.smi.protege.util.DefaultRenderer
repaint(int, int, int, int) - Method in class edu.stanford.smi.protege.util.DefaultRenderer
repaint(Rectangle) - Method in class edu.stanford.smi.protege.util.DefaultRenderer
RepeatableReadCache<S,V,R> - Class in edu.stanford.smi.protege.util.transaction.cache.impl
RepeatableReadCache(Cache<S, V, R>) - Constructor for class edu.stanford.smi.protege.util.transaction.cache.impl.RepeatableReadCache
replace(Frame) - Method in class edu.stanford.smi.protege.model.framestore.ReferenceImpl
replace(Frame, Frame) - Method in interface edu.stanford.smi.protege.model.Storage
replace(int, Object) - Method in class edu.stanford.smi.protege.util.HashList
  Deprecated.
replace(Object, Object) - Method in class edu.stanford.smi.protege.util.HashList
  Deprecated.
replace(String, String, String) - Static method in class edu.stanford.smi.protege.util.StringUtilities
REPLACE_FRAME - Static variable in class edu.stanford.smi.protege.event.FrameEvent
replaceExtension(String, String) - Static method in class edu.stanford.smi.protege.util.FileUtilities
replaceExtension(URI, String) - Static method in class edu.stanford.smi.protege.util.URIUtilities
replaceFile(File, File) - Static method in class edu.stanford.smi.protege.util.FileUtilities
replaceFileName(String, String) - Static method in class edu.stanford.smi.protege.util.FileUtilities
replaceFrame(Frame, Frame) - Method in class edu.stanford.smi.protege.model.framestore.ArgumentCheckingFrameStore
replaceFrame(Frame, Frame) - Method in class edu.stanford.smi.protege.model.framestore.ChangeMonitorFrameStore
replaceFrame(Frame) - Method in class edu.stanford.smi.protege.model.framestore.ClosureCachingBasicFrameStore
replaceFrame(Frame, Frame) - Method in class edu.stanford.smi.protege.model.framestore.ClosureCachingBasicFrameStore
replaceFrame(Frame, Frame) - Method in class edu.stanford.smi.protege.model.framestore.EventDispatchFrameStore
replaceFrame(Frame, Frame) - Method in class edu.stanford.smi.protege.model.framestore.EventGeneratorFrameStore
replaceFrame(Frame, Frame) - Method in interface edu.stanford.smi.protege.model.framestore.FrameStore
replaceFrame(Frame, Frame) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreAdapter
replaceFrame(Frame) - Method in class edu.stanford.smi.protege.model.framestore.ImmutableNamesNarrowFrameStore
replaceFrame(Frame, Frame) - Method in class edu.stanford.smi.protege.model.framestore.ImmutableNamesNarrowFrameStore
replaceFrame(Frame) - Method in class edu.stanford.smi.protege.model.framestore.InMemoryFrameDb
replaceFrame(Frame, Frame) - Method in class edu.stanford.smi.protege.model.framestore.InMemoryFrameDb
replaceFrame(Frame) - Method in class edu.stanford.smi.protege.model.framestore.MergingNarrowFrameStore
replaceFrame(Frame, Frame) - Method in class edu.stanford.smi.protege.model.framestore.MergingNarrowFrameStore
replaceFrame(Frame, Frame) - Method in class edu.stanford.smi.protege.model.framestore.ModificationRecordFrameStore
replaceFrame(Frame) - Method in interface edu.stanford.smi.protege.model.framestore.NarrowFrameStore
  A complete hack to work around problems with the java packages feature
replaceFrame(Frame, Frame) - Method in interface edu.stanford.smi.protege.model.framestore.NarrowFrameStore
  Replace all references of the frame original with the frame replacement.
replaceFrame(Frame) - Method in class edu.stanford.smi.protege.model.framestore.PlaceHolderNarrowFrameStore
replaceFrame(Frame, Frame) - Method in class edu.stanford.smi.protege.model.framestore.PlaceHolderNarrowFrameStore
replaceFrame(Frame, Frame) - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
replaceFrame(Frame, Frame) - Method in class edu.stanford.smi.protege.model.framestore.TemplateFrameStore
replaceFrame(Frame, Frame) - Method in class edu.stanford.smi.protege.model.framestore.undo.UndoFrameStore
replaceFrame(FrameID, Frame) - Method in class edu.stanford.smi.protege.model.SystemFrames
replaceFrame(Frame, Frame) - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
replaceFrame(Frame, Frame, RemoteSession) - Method in interface edu.stanford.smi.protege.server.framestore.RemoteServerFrameStore
replaceFrame(Frame, Frame, RemoteSession) - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
replaceFrame(Frame, RemoteSession) - Method in interface edu.stanford.smi.protege.server.narrowframestore.RemoteServerNarrowFrameStore
replaceFrame(Frame, Frame, RemoteSession) - Method in interface edu.stanford.smi.protege.server.narrowframestore.RemoteServerNarrowFrameStore
replaceFrame(Frame, RemoteSession) - Method in class edu.stanford.smi.protege.server.narrowframestore.ServerNarrowFrameStore
replaceFrame(Frame, Frame, RemoteSession) - Method in class edu.stanford.smi.protege.server.narrowframestore.ServerNarrowFrameStore
replaceFrame(Frame) - Method in class edu.stanford.smi.protege.storage.database.DefaultDatabaseFrameDb
replaceFrame(Frame, Frame) - Method in class edu.stanford.smi.protege.storage.database.DefaultDatabaseFrameDb
replaceFrame(Frame) - Method in class edu.stanford.smi.protege.storage.database.IdleConnectionNarrowFrameStore
replaceFrame(Frame, Frame) - Method in class edu.stanford.smi.protege.storage.database.IdleConnectionNarrowFrameStore
replaceFrame(Frame) - Method in class edu.stanford.smi.protege.storage.database.ValueCachingNarrowFrameStore
replaceFrame(Frame, Frame) - Method in class edu.stanford.smi.protege.storage.database.ValueCachingNarrowFrameStore
ReplaceFrameCommand - Class in edu.stanford.smi.protege.model.framestore.undo
ReplaceFrameCommand(FrameStore, Frame, Frame) - Constructor for class edu.stanford.smi.protege.model.framestore.undo.ReplaceFrameCommand
replaceFrameReference(Frame) - Method in class edu.stanford.smi.protege.model.framestore.Record
replaceFrameValue(Frame) - Method in class edu.stanford.smi.protege.model.framestore.Record
replaceInstance(Instance) - Method in class edu.stanford.smi.protege.widget.ClsFieldWidget
replaceInstance(Instance) - Method in class edu.stanford.smi.protege.widget.InstanceFieldWidget
replaceItem(Object, Object) - Method in class edu.stanford.smi.protege.widget.AbstractListWidget
replaceListValue(JList, Object, Object) - Static method in class edu.stanford.smi.protege.util.ComponentUtilities
replaceSelectedWidget(String) - Method in class edu.stanford.smi.protege.widget.FormWidget
replaceSlot(Slot, Slot) - Method in class edu.stanford.smi.protege.model.BrowserSlotPattern
replaceWidget(Slot, String) - Method in interface edu.stanford.smi.protege.widget.ClsWidget
replaceWidget(Slot, String) - Method in class edu.stanford.smi.protege.widget.FormWidget
replaceWidget(Slot, String) - Method in class edu.stanford.smi.protege.widget.UglyClsWidget
reportDelays() - Method in class edu.stanford.smi.protege.server.socket.SimulateDelayAspect
reportProblem(Connection) - Method in class edu.stanford.smi.protege.storage.database.pool.ConnectionPool
reposition(JList, Object, Comparator) - Static method in class edu.stanford.smi.protege.util.ComponentUtilities
requestEventDispatch(KnowledgeBase) - Static method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
requestFocus(JComponent) - Static method in class edu.stanford.smi.protege.util.ComponentUtilities
requestFrameValues(Set<Frame>, boolean) - Method in class edu.stanford.smi.protege.server.framestore.background.ClientCacheRequestor
requestRevertProject() - Method in class edu.stanford.smi.protege.ui.ProjectManager
requestValueCache(Set<Frame>, boolean, RemoteSession) - Method in interface edu.stanford.smi.protege.server.framestore.RemoteServerFrameStore
requestValueCache(Set<Frame>, boolean, RemoteSession) - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
REQUIRED_LABEL - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
resetAuth() - Static method in class edu.stanford.smi.protege.server.socket.SSLFactory
resetCounts() - Method in class edu.stanford.smi.protege.util.DefaultLogger
reshape(int, int, int, int) - Method in class edu.stanford.smi.protege.ui.InstanceDisplay
  Deprecated.
reshape(int, int, int, int) - Method in class edu.stanford.smi.protege.widget.AbstractSlotWidget
  Deprecated.
ResizingLayout - Class in edu.stanford.smi.protege.util
  Layout manager that simply scales the existing components by default.
ResizingLayout() - Constructor for class edu.stanford.smi.protege.util.ResizingLayout
resolve(Collection, Collection) - Method in class edu.stanford.smi.protege.model.DefaultValuesConstraint
resolve(Collection, Collection) - Method in interface edu.stanford.smi.protege.model.FacetConstraint
resolve(Collection, Collection) - Method in class edu.stanford.smi.protege.model.MaximumCardinalityConstraint
resolve(Collection, Collection) - Method in class edu.stanford.smi.protege.model.MinimumCardinalityConstraint
resolve(Collection, Collection) - Method in class edu.stanford.smi.protege.model.NumericMaximumConstraint
resolve(Collection, Collection) - Method in class edu.stanford.smi.protege.model.NumericMinimumConstraint
resolve(Collection, Collection) - Method in class edu.stanford.smi.protege.model.ValueTypeConstraint
resolve(URI, String) - Static method in class edu.stanford.smi.protege.util.URIUtilities
  Attempts to improve on the built-in resolution by resolving non-hierarchical URI's (such as jar uri's) We also handle passing a name that can be a file (an thus possibly not a valid URI).
resolveValues(Collection, Collection) - Method in class edu.stanford.smi.protege.model.DefaultFacet
resolveValues(Collection, Collection) - Method in interface edu.stanford.smi.protege.model.Facet
ResourceKey - Class in edu.stanford.smi.protege.resource
  TODO Class Comment
ResourceKey(String) - Constructor for class edu.stanford.smi.protege.resource.ResourceKey
ResourcesKey - Static variable in class edu.stanford.smi.protege.ui.ClsesPanel
restoreFrame() - Method in class edu.stanford.smi.protege.model.framestore.undo.DeleteClsCommand
restoreFrame() - Method in class edu.stanford.smi.protege.model.framestore.undo.DeleteFrameCommand
restoreFrame() - Method in class edu.stanford.smi.protege.model.framestore.undo.DeleteSlotCommand
restoreMainFrameProperties(Frame) - Static method in class edu.stanford.smi.protege.util.ApplicationProperties
RESULT_CANCEL - Static variable in class edu.stanford.smi.protege.util.Wizard
RESULT_ERROR - Static variable in class edu.stanford.smi.protege.util.ModalDialog
RESULT_FINISH - Static variable in class edu.stanford.smi.protege.util.Wizard
revalidate() - Method in class edu.stanford.smi.protege.util.DefaultRenderer
RevertProject - Class in edu.stanford.smi.protege.action
RevertProject(boolean) - Constructor for class edu.stanford.smi.protege.action.RevertProject
revertToVersion(Project, Date) - Method in class edu.stanford.smi.protege.util.ArchiveManager
RmiSocketFactory - Class in edu.stanford.smi.protege.server.socket
RmiSocketFactory(SSLFactory.Context) - Constructor for class edu.stanford.smi.protege.server.socket.RmiSocketFactory
RobustConnection - Class in edu.stanford.smi.protege.storage.database
RobustConnection(String, String, String, String, TransactionMonitor, RemoteSession) - Constructor for class edu.stanford.smi.protege.storage.database.RobustConnection
ROLE - Static variable in interface edu.stanford.smi.protege.model.Model.Slot
ROLE - Static variable in interface edu.stanford.smi.protege.model.Model.SlotID
ROLE - Static variable in interface edu.stanford.smi.protege.storage.clips.ParserConstants
  RegularExpression Id.
ROLE_SLOT_WIDGET_LABEL - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
RoleConstraint - Class in edu.stanford.smi.protege.model
  Value which determines whether a class can have direct instances.
RoleConstraint() - Constructor for class edu.stanford.smi.protege.model.RoleConstraint
RoleWidget - Class in edu.stanford.smi.protege.widget
  Slot widget for acquiring the "role" (abstract or concrete) of a class.
RoleWidget() - Constructor for class edu.stanford.smi.protege.widget.RoleWidget
rollbackTransaction() - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
rollbackTransaction() - Method in class edu.stanford.smi.protege.model.framestore.ArgumentCheckingFrameStore
rollbackTransaction() - Method in class edu.stanford.smi.protege.model.framestore.ChangeMonitorFrameStore
rollbackTransaction() - Method in class edu.stanford.smi.protege.model.framestore.ClosureCachingBasicFrameStore
rollbackTransaction() - Method in class edu.stanford.smi.protege.model.framestore.EventDispatchFrameStore
rollbackTransaction() - Method in class edu.stanford.smi.protege.model.framestore.EventGeneratorFrameStore
rollbackTransaction() - Method in interface edu.stanford.smi.protege.model.framestore.FrameStore
rollbackTransaction() - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreAdapter
rollbackTransaction() - Method in class edu.stanford.smi.protege.model.framestore.ImmutableNamesNarrowFrameStore
rollbackTransaction() - Method in class edu.stanford.smi.protege.model.framestore.InMemoryFrameDb
rollbackTransaction() - Method in class edu.stanford.smi.protege.model.framestore.MergingNarrowFrameStore
rollbackTransaction() - Method in class edu.stanford.smi.protege.model.framestore.ModificationRecordFrameStore
rollbackTransaction() - Method in interface edu.stanford.smi.protege.model.framestore.NarrowFrameStore
rollbackTransaction() - Method in class edu.stanford.smi.protege.model.framestore.PlaceHolderNarrowFrameStore
rollbackTransaction() - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
rollbackTransaction() - Method in class edu.stanford.smi.protege.model.framestore.TemplateFrameStore
rollbackTransaction() - Method in class edu.stanford.smi.protege.model.framestore.undo.UndoFrameStore
rollbackTransaction() - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
  Rolls back the recently opened transaction
rollbackTransaction() - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
rollbackTransaction(RemoteSession) - Method in interface edu.stanford.smi.protege.server.framestore.RemoteServerFrameStore
rollbackTransaction(RemoteSession) - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
rollbackTransaction(RemoteSession) - Method in interface edu.stanford.smi.protege.server.narrowframestore.RemoteServerNarrowFrameStore
rollbackTransaction(RemoteSession) - Method in class edu.stanford.smi.protege.server.narrowframestore.ServerNarrowFrameStore
rollbackTransaction(RemoteSession) - Method in class edu.stanford.smi.protege.server.update.DeferredOperationCache
rollbackTransaction() - Method in class edu.stanford.smi.protege.storage.database.AbstractDatabaseFrameDb
rollbackTransaction() - Method in class edu.stanford.smi.protege.storage.database.DefaultDatabaseFrameDb
rollbackTransaction() - Method in class edu.stanford.smi.protege.storage.database.IdleConnectionNarrowFrameStore
rollbackTransaction() - Method in class edu.stanford.smi.protege.storage.database.RobustConnection
rollbackTransaction() - Method in class edu.stanford.smi.protege.storage.database.ValueCachingNarrowFrameStore
rollbackTransaction(S) - Method in interface edu.stanford.smi.protege.util.transaction.cache.Cache
  A transaction is rolled back.
rollbackTransaction(S) - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.BasicCache
rollbackTransaction(S) - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.CompleteableCache
rollbackTransaction(S) - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.InvalidatableCache
rollbackTransaction(S) - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.ReadCommittedCache
rollbackTransaction(S) - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.ReadUncommittedCache
rollbackTransaction(S) - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.RepeatableReadCache
rollbackTransaction() - Method in class edu.stanford.smi.protege.util.transaction.TransactionMonitor
rollbackTransaction() - Method in class edu.stanford.smi.protege.widget.AbstractWidget
ROOT_META_CLASS - Static variable in interface edu.stanford.smi.protege.model.Model.Cls
ROOT_META_CLASS - Static variable in interface edu.stanford.smi.protege.model.Model.ClsID
ROTATION_COUNT - Static variable in class edu.stanford.smi.protege.util.FileHandler
ROTATION_COUNT_PROPERTY - Static variable in class edu.stanford.smi.protege.util.FileHandler
RowTableModel - Class in edu.stanford.smi.protege.util
  TODO Class Comment
RowTableModel(JTable) - Constructor for class edu.stanford.smi.protege.util.RowTableModel
RPAREN - Static variable in interface edu.stanford.smi.protege.storage.clips.ParserConstants
  RegularExpression Id.
run() - Method in class edu.stanford.smi.protege.server.framestore.background.ClientCacheRequestor.RequestorThread
run() - Method in class edu.stanford.smi.protege.server.job.CacheControlJob
run() - Method in class edu.stanford.smi.protege.server.job.GetFrameCalculatorStatisticsJob
run() - Method in class edu.stanford.smi.protege.server.job.GetProjectsForSessionJob
run() - Method in class edu.stanford.smi.protege.server.job.GetProjectsStatusMapJob
run() - Method in class edu.stanford.smi.protege.server.job.GetServerProjectName
run() - Method in class edu.stanford.smi.protege.server.job.GetSessionsJob
run() - Method in class edu.stanford.smi.protege.server.job.GetTransactionIsolationLevelJob
run() - Method in class edu.stanford.smi.protege.server.job.GetUserInfoJob
run() - Method in class edu.stanford.smi.protege.server.util.PingProtegeServerJob
run() - Method in class edu.stanford.smi.protege.util.ControlFrameCalculatorCachingJob
run() - Method in class edu.stanford.smi.protege.util.ExclusiveRunnable
  It is generally expected that the developer will not override this method.
run() - Method in class edu.stanford.smi.protege.util.GetInstancesAndBrowserTextJob
run() - Method in class edu.stanford.smi.protege.util.GetOwnSlotValuesBrowserTextJob
run() - Method in class edu.stanford.smi.protege.util.RemoteJob
  This class is overridden by the sub class and defines the fuunctionality of this job.
RUNTIME_CLS_WIDGET_CREATED - Static variable in class edu.stanford.smi.protege.event.ProjectEvent
runtimeClsWidgetCreated(ProjectEvent) - Method in class edu.stanford.smi.protege.event.ProjectAdapter
runtimeClsWidgetCreated(ProjectEvent) - Method in interface edu.stanford.smi.protege.event.ProjectListener

## S

SALT_SLOT_NAME - Static variable in class edu.stanford.smi.protege.widget.DigestedPasswordWidget
SAME_VALUES - Static variable in interface edu.stanford.smi.protege.model.Model.Facet
SAME_VALUES - Static variable in interface edu.stanford.smi.protege.model.Model.FacetID
SAME_VALUES - Static variable in interface edu.stanford.smi.protege.model.Model.Slot
SAME_VALUES - Static variable in interface edu.stanford.smi.protege.model.Model.SlotID
save(Collection) - Method in class edu.stanford.smi.protege.model.Project
save(Collection) - Method in class edu.stanford.smi.protege.server.metaproject.impl.MetaProjectImpl
save(Collection) - Method in interface edu.stanford.smi.protege.server.metaproject.MetaProject
save() - Method in class edu.stanford.smi.protege.widget.AbstractTabWidget
save() - Method in interface edu.stanford.smi.protege.widget.TabWidget
  Called when the user attempts to save a project and all tabs return 'true' from their #canSave() methods.
SAVE_PROJECT_FAILED_DIALOG_TITLE - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
saveAllProjects() - Method in class edu.stanford.smi.protege.server.Server
saveAndDiscardCustomizations(Project, Collection) - Method in class edu.stanford.smi.protege.plugin.AbstractBackendExportPlugin
saveContents() - Method in class edu.stanford.smi.protege.server.RegisterUserServerPanel
saveContents() - Method in class edu.stanford.smi.protege.server.ServerPanel
saveContents() - Method in class edu.stanford.smi.protege.storage.clips.FileSourcesPanel
saveContents() - Method in class edu.stanford.smi.protege.storage.database.DatabaseKnowledgeBaseSourcesEditor
saveContents() - Method in class edu.stanford.smi.protege.storage.xml.FileSourcesPanel
saveContents() - Method in class edu.stanford.smi.protege.ui.ConfigureProtegePropertiesPanel
saveContents() - Method in class edu.stanford.smi.protege.ui.GeneralPreferencesPanel
saveContents() - Method in class edu.stanford.smi.protege.ui.PreferencesPanel
saveContents() - Method in class edu.stanford.smi.protege.ui.SelectClsesPanel
saveContents() - Method in interface edu.stanford.smi.protege.util.Validatable
  Save the contents of the current fields of this component to the underlying data structure.
saveContents() - Method in class edu.stanford.smi.protege.util.ValidatableTabComponent
saveContents() - Method in class edu.stanford.smi.protege.widget.ButtonConfigurationPanel
saveContents() - Method in class edu.stanford.smi.protege.widget.FormWidgetConfigurationLayoutTab
saveContents() - Method in class edu.stanford.smi.protege.widget.FormWidgetConfigurationWidgetsTab
saveContents() - Method in class edu.stanford.smi.protege.widget.GeneralWidgetConfigurationPanel
saveContents() - Method in class edu.stanford.smi.protege.widget.KAToolTabConfigurationPanel
  saveContents method comment.
saveContents() - Method in class edu.stanford.smi.protege.widget.ReadOnlyWidgetConfigurationPanel
saved(ProjectViewEvent) - Method in interface edu.stanford.smi.protege.util.ProjectViewListener
saveFrame() - Method in class edu.stanford.smi.protege.model.framestore.undo.DeleteClsCommand
saveFrame() - Method in class edu.stanford.smi.protege.model.framestore.undo.DeleteFrameCommand
saveFrame() - Method in class edu.stanford.smi.protege.model.framestore.undo.DeleteSlotCommand
saveFrames(KnowledgeBase) - Method in class edu.stanford.smi.protege.storage.database.DefaultDatabaseFrameDb
saveKnowledgeBase(KnowledgeBase, PropertyList, Collection) - Method in interface edu.stanford.smi.protege.model.KnowledgeBaseFactory
saveKnowledgeBase(KnowledgeBase, PropertyList, Collection) - Method in class edu.stanford.smi.protege.storage.clips.ClipsKnowledgeBaseFactory
saveKnowledgeBase(KnowledgeBase, Writer, Writer, Collection) - Method in class edu.stanford.smi.protege.storage.clips.ClipsKnowledgeBaseFactory
saveKnowledgeBase(KnowledgeBase, String, String, Collection) - Method in class edu.stanford.smi.protege.storage.clips.ClipsKnowledgeBaseFactory
saveKnowledgeBase(KnowledgeBase, PropertyList, Collection) - Method in class edu.stanford.smi.protege.storage.database.DatabaseKnowledgeBaseFactory
saveKnowledgeBase(KnowledgeBase, PropertyList, Collection) - Method in class edu.stanford.smi.protege.storage.xml.XMLKnowledgeBaseFactory
saveKnowledgeBase(KnowledgeBase, Writer, Collection) - Static method in class edu.stanford.smi.protege.storage.xml.XMLKnowledgeBaseFactory
saveKnowledgeBase(KnowledgeBase, String, Collection) - Method in class edu.stanford.smi.protege.storage.xml.XMLKnowledgeBaseFactory
saveListeners(Object, Collection) - Method in class edu.stanford.smi.protege.util.ListenerCollection
saveListeners(Object, Collection) - Method in class edu.stanford.smi.protege.util.ListenerList
saveListeners(Object, Collection) - Method in class edu.stanford.smi.protege.util.ListenerMap
saveMetaProject(RemoteSession) - Method in interface edu.stanford.smi.protege.server.RemoteServer
saveMetaProject(RemoteSession) - Method in class edu.stanford.smi.protege.server.Server
SaveProject - Class in edu.stanford.smi.protege.action
  Save the current project into the existing project name.
SaveProject(boolean) - Constructor for class edu.stanford.smi.protege.action.SaveProject
SaveProjectAs - Class in edu.stanford.smi.protege.action
  Save the current project with a different name.
SaveProjectAs() - Constructor for class edu.stanford.smi.protege.action.SaveProjectAs
saveProjectAsRequest() - Method in class edu.stanford.smi.protege.ui.ProjectManager
saveProjectAsRequest(KnowledgeBaseFactory) - Method in class edu.stanford.smi.protege.ui.ProjectManager
saveProjectRequest() - Method in class edu.stanford.smi.protege.ui.ProjectManager
SaveProjectToFormat - Class in edu.stanford.smi.protege.action
  Save the current project with a different name.
SaveProjectToFormat() - Constructor for class edu.stanford.smi.protege.action.SaveProjectToFormat
savePropertiesFile(File, Properties) - Static method in class edu.stanford.smi.protege.util.FileUtilities
savePropertyFile(File) - Method in class edu.stanford.smi.protege.widget.ProtegePropertiesComponent
savePropertyFile(File, boolean) - Method in class edu.stanford.smi.protege.widget.ProtegePropertiesComponent
saveToFormatRequest() - Method in class edu.stanford.smi.protege.ui.ProjectManager
saveValues(Frame, Slot, Facet, boolean, Collection) - Method in class edu.stanford.smi.protege.storage.database.DefaultDatabaseFrameDb
SCHEMA_LOCATION - Static variable in interface edu.stanford.smi.protege.storage.xml.XMLString
scrollToVisible(JTable, int, int) - Static method in class edu.stanford.smi.protege.util.ComponentUtilities
  Scrolls a table so that a certain cell becomes visible.
select(Object) - Method in class edu.stanford.smi.protege.ui.BrowserTextListFinder
select(Object) - Method in class edu.stanford.smi.protege.ui.Finder
select(Object) - Method in class edu.stanford.smi.protege.ui.FrameTreeFinder
select(Object) - Method in class edu.stanford.smi.protege.ui.ListFinder
Selectable - Interface in edu.stanford.smi.protege.util
  A generic interface for things that are selectable.
SelectableContainer - Class in edu.stanford.smi.protege.util
  A swing container component that contains a Selectable component.
SelectableContainer() - Constructor for class edu.stanford.smi.protege.util.SelectableContainer
SelectableContainer(Selectable) - Constructor for class edu.stanford.smi.protege.util.SelectableContainer
SelectableList - Class in edu.stanford.smi.protege.util
  A JList that implements the `Selectable` interface.
SelectableList() - Constructor for class edu.stanford.smi.protege.util.SelectableList
SelectableTable - Class in edu.stanford.smi.protege.util
  A JTable that implements the `Selectable` interface.
SelectableTable() - Constructor for class edu.stanford.smi.protege.util.SelectableTable
SelectableTree - Class in edu.stanford.smi.protege.util
  A JTree component that implements the `Selectable` interface.
SelectableTree(Action) - Constructor for class edu.stanford.smi.protege.util.SelectableTree
SelectableTree(Action, LazyTreeRoot) - Constructor for class edu.stanford.smi.protege.util.SelectableTree
selectAll() - Method in class edu.stanford.smi.protege.widget.TextComponentWidget
SelectClsesPanel - Class in edu.stanford.smi.protege.ui
  Panel to allow a user to pick one or more classes.
SelectClsesPanel(KnowledgeBase) - Constructor for class edu.stanford.smi.protege.ui.SelectClsesPanel
SelectClsesPanel(KnowledgeBase, DefaultRenderer) - Constructor for class edu.stanford.smi.protege.ui.SelectClsesPanel
SelectClsesPanel(KnowledgeBase, Collection) - Constructor for class edu.stanford.smi.protege.ui.SelectClsesPanel
SelectClsesPanel(KnowledgeBase, Collection, boolean) - Constructor for class edu.stanford.smi.protege.ui.SelectClsesPanel
SelectInstanceFromCollectionPanel - Class in edu.stanford.smi.protege.ui
  Panel to allow a user to pick a single instance from a collection of instances.
SelectInstanceFromCollectionPanel(Collection, int) - Constructor for class edu.stanford.smi.protege.ui.SelectInstanceFromCollectionPanel
SelectInstancesFromCollectionPanel - Class in edu.stanford.smi.protege.ui
  Panel to allow a user to pick multiple instances from a collection
SelectInstancesPanel - Class in edu.stanford.smi.protege.ui
  Panel to select a set of instances from all of the instances of a given set of classes.
SelectInstancesPanel(KnowledgeBase, Collection) - Constructor for class edu.stanford.smi.protege.ui.SelectInstancesPanel
SELECTION_CHANGED - Static variable in class edu.stanford.smi.protege.util.SelectionEvent
selectionChanged(SelectionEvent) - Method in interface edu.stanford.smi.protege.util.SelectionListener
selectionChanged(SelectionEvent) - Method in class edu.stanford.smi.protege.util.SwitchableSelectionListener
SelectionEvent - Class in edu.stanford.smi.protege.util
  An event fired by a `Selectable` object.
SelectionEvent(Selectable, int) - Constructor for class edu.stanford.smi.protege.util.SelectionEvent
SelectionEventDispatcher - Class in edu.stanford.smi.protege.util
  Dispatcher for `Selectable` selection events.
SelectionEventDispatcher() - Constructor for class edu.stanford.smi.protege.util.SelectionEventDispatcher
SelectionListener - Interface in edu.stanford.smi.protege.util
  Listener interface for the generic `Selectable` interface.
SelectOutputFormatWizardPage - Class in edu.stanford.smi.protege.plugin
  TODO Class Comment
SelectProjectTypeWizardPage - Class in edu.stanford.smi.protege.plugin
  TODO Class Comment
selectSlots(Collection) - Method in class edu.stanford.smi.protege.widget.SuperslotsPanel
SerializedCacheUpdate<S,V,R> - Class in edu.stanford.smi.protege.util.transaction.cache.serialize
SerializedCacheUpdate(S) - Constructor for class edu.stanford.smi.protege.util.transaction.cache.serialize.SerializedCacheUpdate
Server - Class in edu.stanford.smi.protege.server
SERVER_ALLOW_CREATE_USERS - Static variable in class edu.stanford.smi.protege.server.ServerProperties
SERVER_CARD - Static variable in class edu.stanford.smi.protege.util.ProjectChooser
SERVER_LAST_OPENED_PROJECT_PROP - Static variable in class edu.stanford.smi.protege.server.ServerProjectPanel
SERVER_LOCAL_PORT - Static variable in class edu.stanford.smi.protege.server.ServerProperties
SERVER_NEW_PROJECTS_SAVE_DIRECTORY_PROTEGE_PROPERTY - Static variable in class edu.stanford.smi.protege.server.ServerProperties
SERVER_PORT - Static variable in class edu.stanford.smi.protege.server.ServerProperties
SERVER_PORT - Static variable in class edu.stanford.smi.protege.server.socket.RmiSocketFactory
SERVER_PROCESS_USER - Static variable in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
SERVER_SESSION_LOST - Static variable in class edu.stanford.smi.protege.event.ProjectEvent
SERVER_SSL_PORT - Static variable in class edu.stanford.smi.protege.server.socket.RmiSocketFactory
ServerAdminPanel - Class in edu.stanford.smi.protege.server.admin
ServerAdminPanel(RemoteServer, RemoteSession) - Constructor for class edu.stanford.smi.protege.server.admin.ServerAdminPanel
ServerCachedState - Interface in edu.stanford.smi.protege.server.framestore.background
ServerCacheStateMachine - Interface in edu.stanford.smi.protege.server.framestore.background
ServerFrameStore - Class in edu.stanford.smi.protege.server.framestore
ServerFrameStore(KnowledgeBase) - Constructor for class edu.stanford.smi.protege.server.framestore.ServerFrameStore
ServerInstance - Interface in edu.stanford.smi.protege.server.metaproject
ServerInstanceImpl - Class in edu.stanford.smi.protege.server.metaproject.impl
ServerInstanceImpl(MetaProjectImpl, Instance) - Constructor for class edu.stanford.smi.protege.server.metaproject.impl.ServerInstanceImpl
ServerJob - Class in edu.stanford.smi.protege.util
ServerJob(RemoteServer, RemoteSession) - Constructor for class edu.stanford.smi.protege.util.ServerJob
ServerJob(KnowledgeBase) - Constructor for class edu.stanford.smi.protege.util.ServerJob
ServerNarrowFrameStore - Class in edu.stanford.smi.protege.server.narrowframestore
ServerNarrowFrameStore(NarrowFrameStore, KnowledgeBase) - Constructor for class edu.stanford.smi.protege.server.narrowframestore.ServerNarrowFrameStore
ServerPanel - Class in edu.stanford.smi.protege.server
ServerPanel() - Constructor for class edu.stanford.smi.protege.server.ServerPanel
ServerProject - Class in edu.stanford.smi.protege.server
ServerProject(Server, URI, ProjectInstance, Project) - Constructor for class edu.stanford.smi.protege.server.ServerProject
ServerProject.ProjectStatus - Enum in edu.stanford.smi.protege.server
ServerProjectAdapter - Class in edu.stanford.smi.protege.event
ServerProjectAdapter() - Constructor for class edu.stanford.smi.protege.event.ServerProjectAdapter
ServerProjectEvent - Interface in edu.stanford.smi.protege.event
ServerProjectEvent.ServerEventTypes - Enum in edu.stanford.smi.protege.event
ServerProjectListener - Interface in edu.stanford.smi.protege.event
  Listener interface for projects.
ServerProjectNotificationEvent - Class in edu.stanford.smi.protege.event
ServerProjectNotificationEvent(String, String) - Constructor for class edu.stanford.smi.protege.event.ServerProjectNotificationEvent
ServerProjectPanel - Class in edu.stanford.smi.protege.server
ServerProjectPanel(RemoteServer, RemoteSession) - Constructor for class edu.stanford.smi.protege.server.ServerProjectPanel
ServerProjectSessionClosedEvent - Class in edu.stanford.smi.protege.event
ServerProjectSessionClosedEvent(String, RemoteSession) - Constructor for class edu.stanford.smi.protege.event.ServerProjectSessionClosedEvent
ServerProjectStatusChangeEvent - Class in edu.stanford.smi.protege.event
ServerProjectStatusChangeEvent(String, ServerProject.ProjectStatus, ServerProject.ProjectStatus) - Constructor for class edu.stanford.smi.protege.event.ServerProjectStatusChangeEvent
ServerProperties - Class in edu.stanford.smi.protege.server
  This class is a central repository of the server properties.
ServerProperties() - Constructor for class edu.stanford.smi.protege.server.ServerProperties
serverSessionLost(ProjectEvent) - Method in class edu.stanford.smi.protege.event.ProjectAdapter
serverSessionLost(ProjectEvent) - Method in interface edu.stanford.smi.protege.event.ProjectListener
ServerSessionLost - Exception in edu.stanford.smi.protege.server.framestore
ServerSessionLost() - Constructor for exception edu.stanford.smi.protege.server.framestore.ServerSessionLost
ServerSessionLost(String) - Constructor for exception edu.stanford.smi.protege.server.framestore.ServerSessionLost
serverSideCheckOperationAllowed(Operation) - Method in class edu.stanford.smi.protege.util.ProtegeJob
serverSideCheckOperationAllowed(Operation, ProjectInstance) - Method in class edu.stanford.smi.protege.util.RemoteJob
ServerUtil - Class in edu.stanford.smi.protege.server.util
ServerUtil() - Constructor for class edu.stanford.smi.protege.server.util.ServerUtil
Session - Class in edu.stanford.smi.protege.server
Session(String, String) - Constructor for class edu.stanford.smi.protege.server.Session
Session(String, String, boolean) - Constructor for class edu.stanford.smi.protege.server.Session
Session() - Constructor for class edu.stanford.smi.protege.server.Session
SessionEvent - Class in edu.stanford.smi.protege.util
SessionEvent(Object) - Constructor for class edu.stanford.smi.protege.util.SessionEvent
SessionServerPanel - Class in edu.stanford.smi.protege.server.admin
SessionServerPanel(RemoteServer, RemoteSession) - Constructor for class edu.stanford.smi.protege.server.admin.SessionServerPanel
set(Frame, Slot, Facet, boolean) - Method in class edu.stanford.smi.protege.model.framestore.ReferenceImpl
set(int, Object) - Method in class edu.stanford.smi.protege.util.HashList
  Deprecated. Replaces the element at the specified position in this list with the specified element.
SET_MODE - Static variable in class edu.stanford.smi.protege.code.generator.wrapping.ProjectBasedJavaCodeGeneratorOptions
setAbstract(boolean) - Method in interface edu.stanford.smi.protege.model.Cls
setAbstract(boolean) - Method in class edu.stanford.smi.protege.model.DefaultCls
setAbstract(Cls, boolean) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
setAbstract(Cls, boolean) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
setAbstractMode(boolean) - Method in interface edu.stanford.smi.protege.code.generator.wrapping.EditableJavaCodeGeneratorOptions
setAbstractMode(boolean) - Method in class edu.stanford.smi.protege.code.generator.wrapping.ProjectBasedJavaCodeGeneratorOptions
setActiveFrameStore(NarrowFrameStore) - Method in class edu.stanford.smi.protege.model.framestore.MergingNarrowFrameStore
setActiveFrameStore(String) - Method in class edu.stanford.smi.protege.model.framestore.MergingNarrowFrameStore
setActiveProjectURI(URI) - Method in class edu.stanford.smi.protege.ui.ProjectManager
setActiveRootURI(URI) - Method in class edu.stanford.smi.protege.model.Project
setAddNameOnInstanceForm(boolean) - Method in class edu.stanford.smi.protege.model.Project
setAllowed(boolean) - Method in class edu.stanford.smi.protege.util.AllowableAction
setAllowed(AllowableAction, boolean) - Static method in class edu.stanford.smi.protege.widget.AbstractSlotWidget
setAllowedClses(Slot, Collection) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
setAllowedClses(Collection) - Method in class edu.stanford.smi.protege.model.DefaultSlot
setAllowedClses(Slot, Collection) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
setAllowedClses(Collection) - Method in interface edu.stanford.smi.protege.model.Slot
setAllowedGroup(Group) - Method in interface edu.stanford.smi.protege.server.metaproject.GroupOperation
setAllowedGroup(Group) - Method in class edu.stanford.smi.protege.server.metaproject.impl.GroupOperationImpl
setAllowedGroupOperations(Collection<GroupOperation>) - Method in class edu.stanford.smi.protege.server.metaproject.impl.PolicyControlledObjectImpl
setAllowedGroupOperations(Collection<GroupOperation>) - Method in interface edu.stanford.smi.protege.server.metaproject.PolicyControlledObject
setAllowedOperations(Collection<Operation>) - Method in interface edu.stanford.smi.protege.server.metaproject.GroupOperation
setAllowedOperations(Collection<Operation>) - Method in class edu.stanford.smi.protege.server.metaproject.impl.GroupOperationImpl
setAllowedParents(Slot, Collection) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
setAllowedParents(Collection) - Method in class edu.stanford.smi.protege.model.DefaultSlot
setAllowedParents(Slot, Collection) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
setAllowedParents(Collection) - Method in interface edu.stanford.smi.protege.model.Slot
setAllowedValues(Slot, Collection) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
setAllowedValues(Collection) - Method in class edu.stanford.smi.protege.model.DefaultSlot
setAllowedValues(Slot, Collection) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
setAllowedValues(Collection) - Method in interface edu.stanford.smi.protege.model.Slot
setAllowsMultipleValues(Slot, boolean) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
setAllowsMultipleValues(boolean) - Method in class edu.stanford.smi.protege.model.DefaultSlot
setAllowsMultipleValues(Slot, boolean) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
setAllowsMultipleValues(boolean) - Method in interface edu.stanford.smi.protege.model.Slot
setAnnotationProject(ProjectInstance) - Method in class edu.stanford.smi.protege.server.metaproject.impl.ProjectInstanceImpl
setAnnotationProject(ProjectInstance) - Method in interface edu.stanford.smi.protege.server.metaproject.ProjectInstance
setApplet(boolean) - Static method in class edu.stanford.smi.protege.util.SystemUtilities
setArgumentCheckingEnabled(boolean) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
setArgumentCheckingEnabled(boolean) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreManager
setArgumentCheckingEnabled(boolean) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
setAssociatedCls(Cls) - Method in class edu.stanford.smi.protege.widget.AbstractClsWidget
setAssociatedCls(Cls) - Method in class edu.stanford.smi.protege.widget.AbstractSlotWidget
setAssociatedCls(Cls) - Method in interface edu.stanford.smi.protege.widget.ClsWidget
setAssociatedCls(Cls) - Method in class edu.stanford.smi.protege.widget.FormWidget
setAssociatedCls(Cls) - Method in class edu.stanford.smi.protege.widget.InstanceNameWidget
setAssociatedCls(Cls) - Method in class edu.stanford.smi.protege.widget.SlotValuesWidget
setAssociatedCls(Cls) - Method in interface edu.stanford.smi.protege.widget.SlotWidget
setAssociatedFacet(Slot, Facet) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
setAssociatedFacet(Facet) - Method in class edu.stanford.smi.protege.model.DefaultSlot
setAssociatedFacet(Slot, Facet) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
setAssociatedFacet(Facet) - Method in interface edu.stanford.smi.protege.model.Slot
setAssociatedSlot(Slot) - Method in class edu.stanford.smi.protege.model.DefaultFacet
setAssociatedSlot(Facet, Slot) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
setAssociatedSlot(Slot) - Method in interface edu.stanford.smi.protege.model.Facet
setAssociatedSlot(Facet, Slot) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
setAuthor(String) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreManager
setAuthor(String) - Method in class edu.stanford.smi.protege.model.framestore.ModificationRecordFrameStore
setAutoCommit(boolean) - Method in class edu.stanford.smi.protege.storage.database.RobustConnection
setAutosynchronizeClsTrees(boolean) - Method in class edu.stanford.smi.protege.ui.ProjectView
setAutosynchronizingClsTrees(boolean) - Static method in class edu.stanford.smi.protege.util.ApplicationProperties
setAutoUpdateFacetValues(boolean) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
  Deprecated. Use setModificationRecordUpdatingEnabled
setAutoUpdateFacetValues(boolean) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
  Deprecated. Use setModificationRecordUpdatingEnabled
setBackgroundSelectionColor(Color) - Method in class edu.stanford.smi.protege.util.DefaultRenderer
setBoolean(String, boolean) - Static method in class edu.stanford.smi.protege.util.ApplicationProperties
setBoolean(String, Boolean) - Method in class edu.stanford.smi.protege.util.PropertyList
setBoolean(String, boolean) - Method in class edu.stanford.smi.protege.util.PropertyList
setBorder(Border) - Method in class edu.stanford.smi.protege.ui.InstanceDisplay
setBorder(Border) - Method in class edu.stanford.smi.protege.widget.YellowStickyWidget
setBounds(Rectangle) - Method in class edu.stanford.smi.protege.model.WidgetDescriptor
setBrowserText(String) - Method in class edu.stanford.smi.protege.util.FrameWithBrowserText
setBuildString(String) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
setBuildString(String) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
setCacheMachine(ServerCacheStateMachine) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
setCacheStatus(KnowledgeBase, boolean, boolean) - Static method in class edu.stanford.smi.protege.server.job.CacheControlJob
setCaching(RemoteSession, boolean) - Method in class edu.stanford.smi.protege.model.framestore.ClosureCachingBasicFrameStore
setCaching(RemoteSession, boolean) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreManager
setCaching(RemoteSession, boolean) - Method in class edu.stanford.smi.protege.model.framestore.ImmutableNamesNarrowFrameStore
setCaching(RemoteSession, boolean) - Method in class edu.stanford.smi.protege.model.framestore.InMemoryFrameDb
setCaching(RemoteSession, boolean) - Method in class edu.stanford.smi.protege.model.framestore.MergingNarrowFrameStore
setCaching(RemoteSession, boolean) - Method in interface edu.stanford.smi.protege.model.framestore.NarrowFrameStore
setCaching(RemoteSession, boolean) - Method in class edu.stanford.smi.protege.model.framestore.PlaceHolderNarrowFrameStore
setCaching(RemoteSession, boolean, RemoteSession) - Method in interface edu.stanford.smi.protege.server.narrowframestore.RemoteServerNarrowFrameStore
setCaching(RemoteSession, boolean, RemoteSession) - Method in class edu.stanford.smi.protege.server.narrowframestore.ServerNarrowFrameStore
setCaching(RemoteSession, boolean) - Method in class edu.stanford.smi.protege.storage.database.DefaultDatabaseFrameDb
setCaching(RemoteSession, boolean) - Method in class edu.stanford.smi.protege.storage.database.IdleConnectionNarrowFrameStore
setCaching(RemoteSession, boolean) - Method in class edu.stanford.smi.protege.storage.database.ValueCachingNarrowFrameStore
setCallCachingEnabled(boolean) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
setCallCachingEnabled(boolean) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreManager
setCallCachingEnabled(boolean) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
setCellRenderer(ListCellRenderer) - Method in class edu.stanford.smi.protege.ui.Finder
setCellRenderer(ListCellRenderer) - Method in class edu.stanford.smi.protege.ui.SelectInstanceFromCollectionPanel
setCenterComponent(Component) - Method in class edu.stanford.smi.protege.util.LabeledComponent
setChanged(boolean) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
setChanged(boolean) - Method in class edu.stanford.smi.protege.model.framestore.ChangeMonitorFrameStore
setChanged(boolean) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreManager
setChanged(boolean) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
setChanged(boolean) - Method in class edu.stanford.smi.protege.widget.PropertiesTableModel
setChangeMonitorEnabled(boolean) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
setChangeMonitorEnabled(boolean) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreManager
setChangeMonitorEnabled(boolean) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
setChangeTrackingActive(boolean) - Method in class edu.stanford.smi.protege.model.Project
setClean() - Method in class edu.stanford.smi.protege.server.ServerProject
setCleanDispatchEnabled(boolean) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
setCleanDispatchEnabled(boolean) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreManager
setCleanDispatchEnabled(boolean) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
setClient(RemoteSession) - Method in class edu.stanford.smi.protege.server.framestore.background.WorkInfo
setClientInformation(Object, Object) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
setClientInformation(Object, Object) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
setClientInformation(Object, Object) - Method in class edu.stanford.smi.protege.model.Project
  Set persistent client information.
setCls(Cls, Cls) - Method in class edu.stanford.smi.protege.ui.ClsInverseRelationshipPanel
setCls(Cls) - Method in class edu.stanford.smi.protege.ui.SetDisplaySlotPanel
setCls(Cls) - Method in class edu.stanford.smi.protege.widget.AbstractSlotWidget
setClses(Collection<Cls>) - Method in interface edu.stanford.smi.protege.code.generator.wrapping.EditableJavaCodeGeneratorOptions
setClses(Collection<Cls>) - Method in class edu.stanford.smi.protege.code.generator.wrapping.ProjectBasedJavaCodeGeneratorOptions
setClses(Collection<Cls>) - Method in class edu.stanford.smi.protege.ui.DirectInstancesList
setClsTree(JTree) - Method in class edu.stanford.smi.protege.widget.AbstractTabWidget
setColor(Color) - Method in class edu.stanford.smi.protege.ui.HeaderComponent
setComboBoxModel(ComboBoxModel) - Method in class edu.stanford.smi.protege.widget.ComboBoxWidget
setComboBoxValue(String) - Method in class edu.stanford.smi.protege.widget.ComboBoxWidget
setComponentLabel(String) - Method in class edu.stanford.smi.protege.ui.HeaderComponent
setComponentsEnabled(boolean) - Method in class edu.stanford.smi.protege.util.LabeledComponent
setConnectionCallStack(Exception) - Method in class edu.stanford.smi.protege.storage.database.pool.ConnectionInfo
setConstraint(FacetConstraint) - Method in class edu.stanford.smi.protege.model.DefaultFacet
setConstraint(FacetConstraint) - Method in interface edu.stanford.smi.protege.model.Facet
setContextClassLoader(Object) - Static method in class edu.stanford.smi.protege.util.SystemUtilities
setCurrentProject(Project) - Method in class edu.stanford.smi.protege.ui.ProjectManager
setCurrentProject(Project, boolean) - Method in class edu.stanford.smi.protege.ui.ProjectManager
setCurrentProject(Project, boolean, boolean) - Method in class edu.stanford.smi.protege.ui.ProjectManager
setCurrentSession(RemoteSession) - Static method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
setDebugStream(PrintStream) - Method in class edu.stanford.smi.protege.storage.clips.ParserTokenManager
  Set debug output.
setDefaultClsMetaCls(Cls) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
setDefaultClsMetaCls(Cls) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
setDefaultClsWidgetClassName(String) - Method in class edu.stanford.smi.protege.model.Project
setDefaultFacetMetaCls(Cls) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
setDefaultFacetMetaCls(Cls) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
setDefaultSlotMetaCls(Cls) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
setDefaultSlotMetaCls(Cls) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
setDefaultToolTip(String) - Method in class edu.stanford.smi.protege.widget.AbstractSlotWidget
setDefaultToolTip(String) - Method in interface edu.stanford.smi.protege.widget.SlotWidget
setDefaultValues(Slot, Collection) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
setDefaultValues(Collection) - Method in class edu.stanford.smi.protege.model.DefaultSlot
setDefaultValues(Slot, Collection) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
setDefaultValues(Collection) - Method in interface edu.stanford.smi.protege.model.Slot
setDelegate(FrameStore) - Method in class edu.stanford.smi.protege.model.framestore.AbstractFrameStore
setDelegate(FrameStore) - Method in class edu.stanford.smi.protege.model.framestore.AbstractFrameStoreInvocationHandler
  This methods sets the delegate for this InvocationHandler and for the associated frame store.
setDelegate(FrameStore) - Method in class edu.stanford.smi.protege.model.framestore.CallCachingFrameStore
setDelegate(FrameStore) - Method in class edu.stanford.smi.protege.model.framestore.cleandispatch.CleanDispatchFrameStore
setDelegate(FrameStore) - Method in class edu.stanford.smi.protege.model.framestore.EventGeneratorFrameStore
setDelegate(FrameStore) - Method in class edu.stanford.smi.protege.model.framestore.EventSinkFrameStore
setDelegate(FrameStore) - Method in interface edu.stanford.smi.protege.model.framestore.FrameStore
setDelegate(FrameStore) - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
setDelegate(FrameStore) - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
setDelegate(String) - Method in interface edu.stanford.smi.protege.server.RemoteSession
setDelegate(String) - Method in class edu.stanford.smi.protege.server.Session
setDeletingFrameEventsEnabled(boolean) - Method in class edu.stanford.smi.protege.model.framestore.EventGeneratorFrameStore
setDescription(String) - Method in interface edu.stanford.smi.protege.server.metaproject.Group
setDescription(String) - Method in class edu.stanford.smi.protege.server.metaproject.impl.OperationImpl
setDescription(String) - Method in class edu.stanford.smi.protege.server.metaproject.impl.PolicyControlledObjectImpl
setDescription(String) - Method in class edu.stanford.smi.protege.server.metaproject.impl.UnbackedOperationImpl
setDescription(String) - Method in class edu.stanford.smi.protege.server.metaproject.impl.UserImpl
setDescription(String) - Method in interface edu.stanford.smi.protege.server.metaproject.Operation
setDescription(String) - Method in interface edu.stanford.smi.protege.server.metaproject.PolicyControlledObject
setDescription(String) - Method in interface edu.stanford.smi.protege.server.metaproject.User
setDescription(String) - Method in class edu.stanford.smi.protege.util.StandardAction
setDescription(Action, String) - Static method in class edu.stanford.smi.protege.util.StandardAction
setDialogType(int) - Method in class edu.stanford.smi.protege.util.FileField
setDigestAndSalt(DigestAndSalt) - Method in class edu.stanford.smi.protege.widget.DigestedPasswordWidget
setDigestedPassword(String, String) - Method in class edu.stanford.smi.protege.server.metaproject.impl.UserImpl
setDigestedPassword(String, String) - Method in interface edu.stanford.smi.protege.server.metaproject.User
setDimension(Instance, Dimension) - Static method in class edu.stanford.smi.protege.util.InstanceUtilities
setDirectBrowserSlot(Slot) - Method in interface edu.stanford.smi.protege.model.Cls
setDirectBrowserSlot(Slot) - Method in class edu.stanford.smi.protege.model.DefaultCls
  Deprecated.
setDirectBrowserSlot(Cls, Slot) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
  Deprecated.
setDirectBrowserSlot(Cls, Slot) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
setDirectBrowserSlotPattern(BrowserSlotPattern) - Method in interface edu.stanford.smi.protege.model.Cls
setDirectBrowserSlotPattern(BrowserSlotPattern) - Method in class edu.stanford.smi.protege.model.DefaultCls
setDirectBrowserSlotPattern(Cls, BrowserSlotPattern) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
setDirectBrowserSlotPattern(Cls, BrowserSlotPattern) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
setDirectBrowserTextPattern(Cls, BrowserSlotPattern) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
setDirectIncludedProjectURIs(Collection) - Method in class edu.stanford.smi.protege.model.Project
setDirectlyCustomizedByUser(boolean) - Method in class edu.stanford.smi.protege.model.WidgetDescriptor
setDirectOwnSlotValue(Slot, Object) - Method in class edu.stanford.smi.protege.model.DefaultFrame
setDirectOwnSlotValue(Frame, Slot, Object) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
setDirectOwnSlotValue(Slot, Object) - Method in interface edu.stanford.smi.protege.model.Frame
  Same as #setOwnSlotValue(Slot, Object)
setDirectOwnSlotValues(Slot, Collection) - Method in class edu.stanford.smi.protege.model.DefaultFrame
setDirectOwnSlotValues(Frame, Slot, Collection) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
setDirectOwnSlotValues(Slot, Collection) - Method in interface edu.stanford.smi.protege.model.Frame
  Same as #setOwnSlotValues(Slot, Collection)
setDirectOwnSlotValues(Frame, Slot, Collection) - Method in class edu.stanford.smi.protege.model.framestore.ArgumentCheckingFrameStore
setDirectOwnSlotValues(Frame, Slot, Collection) - Method in class edu.stanford.smi.protege.model.framestore.ChangeMonitorFrameStore
setDirectOwnSlotValues(Frame, Slot, Collection) - Method in class edu.stanford.smi.protege.model.framestore.cleandispatch.CleanDispatchFrameStore
setDirectOwnSlotValues(Frame, Slot, Collection) - Method in class edu.stanford.smi.protege.model.framestore.EventDispatchFrameStore
setDirectOwnSlotValues(Frame, Slot, Collection) - Method in class edu.stanford.smi.protege.model.framestore.EventGeneratorFrameStore
setDirectOwnSlotValues(Frame, Slot, Collection) - Method in class edu.stanford.smi.protege.model.framestore.FacetCheckingFrameStore
setDirectOwnSlotValues(Frame, Slot, Collection) - Method in interface edu.stanford.smi.protege.model.framestore.FrameStore
setDirectOwnSlotValues(Frame, Slot, Collection) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreAdapter
setDirectOwnSlotValues(Frame, Slot, Collection) - Method in class edu.stanford.smi.protege.model.framestore.ModificationRecordFrameStore
setDirectOwnSlotValues(Frame, Slot, Collection) - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
setDirectOwnSlotValues(Frame, Slot, Collection) - Method in class edu.stanford.smi.protege.model.framestore.TemplateFrameStore
setDirectOwnSlotValues(Frame, Slot, Collection) - Method in class edu.stanford.smi.protege.model.framestore.undo.UndoFrameStore
setDirectOwnSlotValues(Frame, Slot, Collection) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
setDirectOwnSlotValues(Frame, Slot, Collection) - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
setDirectOwnSlotValues(Frame, Slot, Collection, RemoteSession) - Method in interface edu.stanford.smi.protege.server.framestore.RemoteServerFrameStore
setDirectOwnSlotValues(Frame, Slot, Collection, RemoteSession) - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
setDirectTemplateFacetValue(Cls, Slot, Facet, Object) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
setDirectTemplateFacetValues(Cls, Slot, Facet, Collection) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
setDirectTemplateFacetValues(Cls, Slot, Facet, Collection) - Method in class edu.stanford.smi.protege.model.framestore.ArgumentCheckingFrameStore
setDirectTemplateFacetValues(Cls, Slot, Facet, Collection) - Method in class edu.stanford.smi.protege.model.framestore.ChangeMonitorFrameStore
setDirectTemplateFacetValues(Cls, Slot, Facet, Collection) - Method in class edu.stanford.smi.protege.model.framestore.EventDispatchFrameStore
setDirectTemplateFacetValues(Cls, Slot, Facet, Collection) - Method in class edu.stanford.smi.protege.model.framestore.EventGeneratorFrameStore
setDirectTemplateFacetValues(Cls, Slot, Facet, Collection) - Method in class edu.stanford.smi.protege.model.framestore.FacetCheckingFrameStore
setDirectTemplateFacetValues(Cls, Slot, Facet, Collection) - Method in interface edu.stanford.smi.protege.model.framestore.FrameStore
setDirectTemplateFacetValues(Cls, Slot, Facet, Collection) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreAdapter
setDirectTemplateFacetValues(Cls, Slot, Facet, Collection) - Method in class edu.stanford.smi.protege.model.framestore.ModificationRecordFrameStore
setDirectTemplateFacetValues(Cls, Slot, Facet, Collection) - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
setDirectTemplateFacetValues(Cls, Slot, Facet, Collection) - Method in class edu.stanford.smi.protege.model.framestore.TemplateFrameStore
setDirectTemplateFacetValues(Cls, Slot, Facet, Collection) - Method in class edu.stanford.smi.protege.model.framestore.TransactionFrameStore
setDirectTemplateFacetValues(Cls, Slot, Facet, Collection) - Method in class edu.stanford.smi.protege.model.framestore.undo.UndoFrameStore
setDirectTemplateFacetValues(Cls, Slot, Facet, Collection) - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
setDirectTemplateFacetValues(Cls, Slot, Facet, Collection, RemoteSession) - Method in interface edu.stanford.smi.protege.server.framestore.RemoteServerFrameStore
setDirectTemplateFacetValues(Cls, Slot, Facet, Collection, RemoteSession) - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
setDirectTemplateSlotValues(Cls, Slot, Collection) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
setDirectTemplateSlotValues(Cls, Slot, Collection) - Method in class edu.stanford.smi.protege.model.framestore.ArgumentCheckingFrameStore
setDirectTemplateSlotValues(Cls, Slot, Collection) - Method in class edu.stanford.smi.protege.model.framestore.ChangeMonitorFrameStore
setDirectTemplateSlotValues(Cls, Slot, Collection) - Method in class edu.stanford.smi.protege.model.framestore.EventDispatchFrameStore
setDirectTemplateSlotValues(Cls, Slot, Collection) - Method in class edu.stanford.smi.protege.model.framestore.EventGeneratorFrameStore
setDirectTemplateSlotValues(Cls, Slot, Collection) - Method in class edu.stanford.smi.protege.model.framestore.FacetCheckingFrameStore
setDirectTemplateSlotValues(Cls, Slot, Collection) - Method in interface edu.stanford.smi.protege.model.framestore.FrameStore
setDirectTemplateSlotValues(Cls, Slot, Collection) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreAdapter
setDirectTemplateSlotValues(Cls, Slot, Collection) - Method in class edu.stanford.smi.protege.model.framestore.ModificationRecordFrameStore
setDirectTemplateSlotValues(Cls, Slot, Collection) - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
setDirectTemplateSlotValues(Cls, Slot, Collection) - Method in class edu.stanford.smi.protege.model.framestore.TemplateFrameStore
setDirectTemplateSlotValues(Cls, Slot, Collection) - Method in class edu.stanford.smi.protege.model.framestore.undo.UndoFrameStore
setDirectTemplateSlotValues(Cls, Slot, Collection) - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
setDirectTemplateSlotValues(Cls, Slot, Collection, RemoteSession) - Method in interface edu.stanford.smi.protege.server.framestore.RemoteServerFrameStore
setDirectTemplateSlotValues(Cls, Slot, Collection, RemoteSession) - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
setDirectType(Cls) - Method in class edu.stanford.smi.protege.model.DefaultInstance
setDirectType(Instance, Cls) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
  TODO setDirectType should return void
setDirectType(Cls) - Method in interface edu.stanford.smi.protege.model.Instance
setDirectType(Instance, Cls) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
setDirectTypeOfSubclasses(Cls) - Method in interface edu.stanford.smi.protege.model.Cls
setDirectTypeOfSubclasses(Cls) - Method in class edu.stanford.smi.protege.model.DefaultCls
setDirectTypeOfSubclasses(Cls, Cls) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
setDirectTypeOfSubclasses(Cls, Cls) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
setDirectTypeOfSubslots(Slot, Cls) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
  TODO do we need this?
setDirectTypeOfSubslots(Cls) - Method in class edu.stanford.smi.protege.model.DefaultSlot
setDirectTypeOfSubslots(Slot, Cls) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
setDirectTypeOfSubslots(Cls) - Method in interface edu.stanford.smi.protege.model.Slot
setDirectTypes(Collection) - Method in class edu.stanford.smi.protege.model.DefaultInstance
setDirectTypes(Instance, Collection) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
setDirectTypes(Collection) - Method in interface edu.stanford.smi.protege.model.Instance
setDirectTypes(Instance, Collection) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
setDisabled(boolean) - Static method in class edu.stanford.smi.protege.server.framestore.background.FrameCalculator
setDisabled(boolean, RemoteSession) - Method in class edu.stanford.smi.protege.server.framestore.background.FrameCalculator
setDisabledIcon(Icon) - Method in class edu.stanford.smi.protege.util.StandardAction
setDisabledIcon(Action, Icon) - Static method in class edu.stanford.smi.protege.util.StandardAction
setDispatchEventsEnabled(boolean) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
setDispatchEventsEnabled(boolean) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
setDispatchEventsPassThrough(boolean) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreManager
setDisplayAbstractClassIcon(boolean) - Method in class edu.stanford.smi.protege.model.Project
setDisplayConfirmationOnRemove(boolean) - Method in class edu.stanford.smi.protege.model.Project
setDisplayDirectInstanceCount(boolean) - Method in class edu.stanford.smi.protege.ui.FrameRenderer
setDisplayedInstance(Instance) - Method in class edu.stanford.smi.protege.widget.ClsFieldWidget
setDisplayedInstance(Instance) - Method in class edu.stanford.smi.protege.widget.InstanceFieldWidget
setDisplayFrameTypeIcon(boolean) - Method in class edu.stanford.smi.protege.ui.FrameRenderer
setDisplayHiddenClasses(boolean) - Method in class edu.stanford.smi.protege.model.Project
setDisplayHiddenFrames(boolean) - Method in class edu.stanford.smi.protege.model.Project
setDisplayHiddenIcon(boolean) - Method in class edu.stanford.smi.protege.ui.FrameRenderer
setDisplayInstanceCount(boolean) - Method in class edu.stanford.smi.protege.ui.FrameRenderer
setDisplayMultiParentClassIcon(boolean) - Method in class edu.stanford.smi.protege.model.Project
setDisplayNullEntry(boolean) - Method in class edu.stanford.smi.protege.widget.ComboBoxWidget
setDisplayParent(Cls) - Method in class edu.stanford.smi.protege.ui.ClsesPanel
  An obscure method to change the displayed parent of the selected class.
setDisplayParent(Cls) - Method in class edu.stanford.smi.protege.ui.SubclassPane
setDisplayParent(Slot) - Method in class edu.stanford.smi.protege.ui.SubslotPane
setDisplayParent(JTree, Object, Traverser) - Static method in class edu.stanford.smi.protege.util.ComponentUtilities
setDisplayParent(JTree, Object, Object, Traverser) - Static method in class edu.stanford.smi.protege.util.ComponentUtilities
setDisplayParent(JTree, Object) - Static method in class edu.stanford.smi.protege.widget.AbstractTreeWidget
setDisplayParent(JTree, Object, Object) - Static method in class edu.stanford.smi.protege.widget.AbstractTreeWidget
setDisplayParent(Slot) - Method in class edu.stanford.smi.protege.widget.SuperslotsPanel
SetDisplaySlotPanel - Class in edu.stanford.smi.protege.ui
SetDisplaySlotPanel() - Constructor for class edu.stanford.smi.protege.ui.SetDisplaySlotPanel
setDisplayTrace(boolean) - Method in class edu.stanford.smi.protege.util.DefaultLogger
setDisplayTrailingIcons(boolean) - Method in class edu.stanford.smi.protege.ui.FrameRenderer
setDisplayType(boolean) - Method in class edu.stanford.smi.protege.ui.FrameRenderer
setDisplayWarnings(boolean) - Method in class edu.stanford.smi.protege.util.DefaultLogger
setDocumentation(String) - Method in class edu.stanford.smi.protege.model.DefaultFrame
setDocumentation(Collection) - Method in class edu.stanford.smi.protege.model.DefaultFrame
setDocumentation(Frame, String) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
setDocumentation(Frame, Collection) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
setDocumentation(String) - Method in class edu.stanford.smi.protege.model.DefaultSlot
setDocumentation(String) - Method in interface edu.stanford.smi.protege.model.Frame
setDocumentation(Collection) - Method in interface edu.stanford.smi.protege.model.Frame
setDocumentation(Frame, String) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
setDocumentation(Frame, Collection) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
setDocumentation(String) - Method in interface edu.stanford.smi.protege.model.Slot
setDoPause(boolean) - Method in class edu.stanford.smi.protege.util.DefaultLogger
setDoubleClickListener(DoubleClickListener) - Method in class edu.stanford.smi.protege.widget.AbstractSlotWidget
setDragAndDropEnabled(JComponent, boolean) - Static method in class edu.stanford.smi.protege.util.ComponentUtilities
setDriver(String) - Method in class edu.stanford.smi.protege.storage.database.DatabaseCreateProjectPlugin
setDriver(PropertyList, String) - Static method in class edu.stanford.smi.protege.storage.database.DatabaseKnowledgeBaseFactory
setDriver(String) - Method in interface edu.stanford.smi.protege.storage.database.DatabasePlugin
setEditable(boolean) - Method in class edu.stanford.smi.protege.model.DefaultFrame
setEditable(boolean) - Method in interface edu.stanford.smi.protege.model.Frame
setEditable(boolean) - Method in class edu.stanford.smi.protege.ui.InstanceField
setEditable(boolean) - Method in class edu.stanford.smi.protege.widget.AbstractListWidget
setEditable(boolean) - Method in class edu.stanford.smi.protege.widget.AbstractSlotWidget
setEditable(boolean) - Method in class edu.stanford.smi.protege.widget.CheckBoxWidget
setEditable(boolean) - Method in class edu.stanford.smi.protege.widget.ClsFieldWidget
setEditable(boolean) - Method in class edu.stanford.smi.protege.widget.ClsListWidget
setEditable(boolean) - Method in class edu.stanford.smi.protege.widget.ComboBoxWidget
setEditable(boolean) - Method in class edu.stanford.smi.protege.widget.FormWidget
setEditable(boolean) - Method in class edu.stanford.smi.protege.widget.InstanceFieldWidget
setEditable(boolean) - Method in class edu.stanford.smi.protege.widget.InstanceListWidget
setEditable(boolean) - Method in class edu.stanford.smi.protege.widget.InstanceNameWidget
setEditable(boolean) - Method in class edu.stanford.smi.protege.widget.InstanceValuesComponent
setEditable(boolean) - Method in class edu.stanford.smi.protege.widget.InverseSlotWidget
setEditable(boolean) - Method in class edu.stanford.smi.protege.widget.MaximumCardinalityWidget
setEditable(boolean) - Method in class edu.stanford.smi.protege.widget.MinimumCardinalityWidget
setEditable(boolean) - Method in class edu.stanford.smi.protege.widget.StringListWidget
setEditable(boolean) - Method in class edu.stanford.smi.protege.widget.TemplateSlotsWidget
setEditable(boolean) - Method in class edu.stanford.smi.protege.widget.TextComponentWidget
setEditable(boolean) - Method in interface edu.stanford.smi.protege.widget.ValuesComponent
setEditable(boolean) - Method in class edu.stanford.smi.protege.widget.ValueTypeWidget
setEditable(boolean) - Method in class edu.stanford.smi.protege.widget.YellowStickyWidget
setEmail(String) - Method in class edu.stanford.smi.protege.server.metaproject.impl.UserImpl
setEmail(String) - Method in interface edu.stanford.smi.protege.server.metaproject.User
setEnabled(FrameStore, boolean) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreManager
setEnabled(boolean) - Method in class edu.stanford.smi.protege.ui.Finder
  Sets the enabled state of the Finder control.
setEnabled(boolean) - Method in class edu.stanford.smi.protege.ui.SetDisplaySlotPanel
setEnabled(Component, boolean) - Static method in class edu.stanford.smi.protege.util.ComponentUtilities
setEnabled(boolean) - Method in class edu.stanford.smi.protege.util.IntegerField
setEnabledInstanceDisplay(InstanceDisplay, boolean) - Static method in class edu.stanford.smi.protege.widget.WidgetUtilities
  Sets all the widgets of an instance form to enabled/disabled according to the enabled argument.
setErrorText(String) - Method in class edu.stanford.smi.protege.storage.database.DatabaseWizardPage
setEventDispatchEnabled(boolean) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
setEventDispatchEnabled(boolean) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreManager
setEventsEnabled(boolean) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
  Deprecated. Use #setGenerateEventsEnabled(boolean)
setEventsEnabled(boolean) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
  Deprecated. Use #setGenerateEventsEnabled(boolean)
setException(Throwable) - Method in class edu.stanford.smi.protege.util.MessageError
setExitVMOnApplicationExit(boolean) - Method in class edu.stanford.smi.protege.ui.ProjectManager
setExpanded(JTree, Collection, boolean) - Static method in class edu.stanford.smi.protege.util.ComponentUtilities
setExpandedCls(Cls, boolean) - Method in class edu.stanford.smi.protege.ui.ClsesPanel
setExpandedCls(Cls, boolean) - Method in class edu.stanford.smi.protege.ui.SubclassPane
setExpandedSlot(Slot, boolean) - Method in class edu.stanford.smi.protege.ui.SubslotPane
setExportBrowserText(boolean) - Method in class edu.stanford.smi.protege.action.ExportToCsvAction
setExportBrowserText(boolean) - Static method in class edu.stanford.smi.protege.action.ExportToCsvUtil
setExportFile(File) - Method in class edu.stanford.smi.protege.action.ExportToCsvAction
setExportHeader(boolean) - Method in class edu.stanford.smi.protege.action.ExportToCsvAction
setExportMetadata(String) - Method in class edu.stanford.smi.protege.action.ExportToCsvAction
setExportMetadata(boolean) - Method in class edu.stanford.smi.protege.action.ExportToCsvAction
setExportMetadata(boolean) - Static method in class edu.stanford.smi.protege.action.ExportToCsvUtil
setExportMetadata(String) - Method in class edu.stanford.smi.protege.ui.ExportConfigurationPanel
setExportPlugin(ExportProjectPlugin) - Method in class edu.stanford.smi.protege.plugin.ExportWizard
setExportSuperclass(boolean) - Method in class edu.stanford.smi.protege.action.ExportToCsvAction
setExportSuperclass(boolean) - Static method in class edu.stanford.smi.protege.action.ExportToCsvUtil
setExportToNewFormat(boolean) - Method in class edu.stanford.smi.protege.plugin.ExportWizard
setExportTypes(boolean) - Method in class edu.stanford.smi.protege.action.ExportToCsvAction
setFacet(PreparedStatement, int, Facet) - Static method in class edu.stanford.smi.protege.storage.database.DatabaseUtils
setFacetCheckingEnabled(boolean) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
setFacetCheckingEnabled(boolean) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreManager
setFacetCheckingEnabled(boolean) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
setFactoryClassName(String) - Method in interface edu.stanford.smi.protege.code.generator.wrapping.EditableJavaCodeGeneratorOptions
setFactoryClassName(String) - Method in class edu.stanford.smi.protege.code.generator.wrapping.ProjectBasedJavaCodeGeneratorOptions
setFiles(String, String) - Method in class edu.stanford.smi.protege.storage.clips.ClipsFilesCreateProjectPlugin
setFiles(String, String) - Method in class edu.stanford.smi.protege.storage.clips.ClipsFilesExportProjectPlugin
setFiles(String, String) - Method in interface edu.stanford.smi.protege.storage.clips.ClipsFilesPlugin
setFinderComponent(JComponent) - Method in class edu.stanford.smi.protege.ui.ClsesPanel
setFinderComponent(JComponent) - Method in class edu.stanford.smi.protege.ui.SubclassPane
setFinderComponent(JComponent) - Method in class edu.stanford.smi.protege.ui.SubslotPane
setFinderComponent(JComponent) - Method in class edu.stanford.smi.protege.widget.ClsesTab
setFinishPosting(Object) - Method in class edu.stanford.smi.protege.util.ListenerCollection
setFinishPosting(Object) - Method in class edu.stanford.smi.protege.util.ListenerList
setFinishPosting(Object) - Method in class edu.stanford.smi.protege.util.ListenerMap
setFontStyle(int) - Method in class edu.stanford.smi.protege.util.DefaultRenderer
setFooter(JComponent) - Method in class edu.stanford.smi.protege.widget.AbstractTreeWidget
setFooterComponent(JComponent) - Method in class edu.stanford.smi.protege.util.LabeledComponent
setForegroundColorOverride(Color) - Method in class edu.stanford.smi.protege.util.DefaultRenderer
setFrame(Frame) - Method in class edu.stanford.smi.protege.server.framestore.background.ClientAndFrame
setFrame(Frame) - Method in class edu.stanford.smi.protege.server.framestore.background.WorkInfo
setFrame(PreparedStatement, int, Frame) - Static method in class edu.stanford.smi.protege.storage.database.DatabaseUtils
setFrame(PreparedStatement, int, int, Frame, FrameFactory) - Static method in class edu.stanford.smi.protege.storage.database.DatabaseUtils
setFrame(Frame) - Method in class edu.stanford.smi.protege.util.FrameWithBrowserText
setFrameCalculatorDisabled(boolean) - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
setFrameCalculatorDisabled(boolean) - Method in class edu.stanford.smi.protege.server.Server
setFrameCalculatorDisabled(boolean) - Method in class edu.stanford.smi.protege.server.ServerProject
setFrameDb(DatabaseFrameDb) - Method in class edu.stanford.smi.protege.storage.database.ValueCachingNarrowFrameStore
setFrameFactory(FrameFactory) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
setFrameFactory(FrameFactory) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
setFrameId(PreparedStatement, int, FrameID) - Static method in class edu.stanford.smi.protege.storage.database.DatabaseUtils
setFrameNamePrefix(String) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
setFrameNamePrefix(String) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
setFrameNameValidator(FrameNameValidator) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
setFrameNameValidator(FrameNameValidator) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
setFramesWithBrowserTextToExport(Collection<FrameWithBrowserText>) - Method in class edu.stanford.smi.protege.action.ExportToCsvAction
setFrameTitle(Component, String) - Static method in class edu.stanford.smi.protege.util.ComponentUtilities
setFrameType(PreparedStatement, int, int) - Static method in class edu.stanford.smi.protege.storage.database.DatabaseUtils
setGenerateDeletingFrameEventsEnabled(boolean) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
setGenerateDeletingFrameEventsEnabled(boolean) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreManager
setGenerateDeletingFrameEventsEnabled(boolean) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
setGenerateEventsEnabled(boolean) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
setGenerateEventsEnabled(boolean) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreManager
setGenerateEventsEnabled(boolean) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
setGrayedSecondaryText(boolean) - Method in class edu.stanford.smi.protege.util.DefaultRenderer
setGrayedText(boolean) - Method in class edu.stanford.smi.protege.util.DefaultRenderer
setHeaderComponent(JComponent) - Method in class edu.stanford.smi.protege.util.LabeledComponent
setHeaderComponent(JComponent, String) - Method in class edu.stanford.smi.protege.util.LabeledComponent
setHeaderComponent(JComponent) - Method in class edu.stanford.smi.protege.widget.AbstractTreeWidget
setHeaderIcon(Icon) - Method in class edu.stanford.smi.protege.util.LabeledComponent
  Sets an Icon that will appear beside the label text.
setHeaderLabel(String) - Method in class edu.stanford.smi.protege.util.LabeledComponent
setHelper(NarrowFrameStore) - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
setHidden(Frame, boolean) - Method in class edu.stanford.smi.protege.model.Project
setHiddenByTransaction(boolean) - Method in class edu.stanford.smi.protege.util.SessionEvent
setHorizontalStretcher(String) - Method in class edu.stanford.smi.protege.widget.FormWidget
setHostName(String) - Method in class edu.stanford.smi.protege.server.metaproject.impl.ServerInstanceImpl
setHostName(String) - Method in interface edu.stanford.smi.protege.server.metaproject.ServerInstance
setIcon(Icon) - Method in class edu.stanford.smi.protege.util.StandardAction
setIcon(Action, Icon) - Static method in class edu.stanford.smi.protege.util.StandardAction
setIcon(Icon) - Method in class edu.stanford.smi.protege.widget.AbstractTabWidget
setIconName(String) - Method in class edu.stanford.smi.protege.util.FrameWithBrowserText
setIdle(boolean) - Method in class edu.stanford.smi.protege.storage.database.RobustConnection
setIncluded(boolean) - Method in class edu.stanford.smi.protege.model.DefaultFrame
setIncluded(boolean) - Method in interface edu.stanford.smi.protege.model.Frame
setIncluded(boolean) - Method in class edu.stanford.smi.protege.model.WidgetDescriptor
setIncludedProjects(Collection<URI>) - Method in class edu.stanford.smi.protege.storage.clips.ClipsFilesCreateProjectPlugin
setInCollection(Set<PolicyControlledObjectCollection>) - Method in class edu.stanford.smi.protege.server.metaproject.impl.PolicyControlledObjectImpl
setInCollection(Set<PolicyControlledObjectCollection>) - Method in interface edu.stanford.smi.protege.server.metaproject.PolicyControlledObject
setInformedUserOfLongConnectionTime(boolean) - Method in class edu.stanford.smi.protege.storage.database.pool.ConnectionInfo
setInitialExportClasses(Collection<Cls>) - Method in class edu.stanford.smi.protege.ui.ExportConfigurationPanel
  Give a chance to other parts of the code to set the intial classes that will show up in the exported classes list
setInstance(Instance) - Method in class edu.stanford.smi.protege.ui.DirectTypesList
setInstance(Instance) - Method in class edu.stanford.smi.protege.ui.InstanceDisplay
setInstance(Instance, Cls) - Method in class edu.stanford.smi.protege.ui.InstanceDisplay
setInstance(Instance) - Method in class edu.stanford.smi.protege.ui.InstanceField
setInstance(Instance) - Method in class edu.stanford.smi.protege.widget.AbstractClsWidget
setInstance(Instance) - Method in class edu.stanford.smi.protege.widget.AbstractListWidget
setInstance(Instance) - Method in class edu.stanford.smi.protege.widget.AbstractSlotWidget
setInstance(Instance) - Method in class edu.stanford.smi.protege.widget.AbstractTableWidget
setInstance(Instance) - Method in interface edu.stanford.smi.protege.widget.ClsWidget
setInstance(Instance) - Method in class edu.stanford.smi.protege.widget.FormWidget
setInstance(Instance) - Method in class edu.stanford.smi.protege.widget.InstanceNameWidget
setInstance(Instance) - Method in class edu.stanford.smi.protege.widget.InverseSlotWidget
setInstance(Instance) - Method in class edu.stanford.smi.protege.widget.SlotValuesWidget
setInstance(Instance) - Method in interface edu.stanford.smi.protege.widget.SlotWidget
setInstance(Instance) - Method in class edu.stanford.smi.protege.widget.TemplateSlotsWidget
setInstance(Instance) - Method in class edu.stanford.smi.protege.widget.TextComponentWidget
setInstanceDisplayClass(Class) - Method in class edu.stanford.smi.protege.model.Project
setInstanceSelectable(Selectable) - Method in class edu.stanford.smi.protege.widget.AbstractTabWidget
setInstancesToExport(Collection<Instance>) - Method in class edu.stanford.smi.protege.action.ExportToCsvAction
setInstanceValues() - Method in class edu.stanford.smi.protege.widget.AbstractSlotWidget
setInstanceValues() - Method in class edu.stanford.smi.protege.widget.InstanceNameWidget
setInstanceValues() - Method in class edu.stanford.smi.protege.widget.TextComponentWidget
setInt(String, int) - Static method in class edu.stanford.smi.protege.util.ApplicationProperties
setInteger(String, int) - Method in class edu.stanford.smi.protege.util.PropertyList
setInteger(String, Integer) - Method in class edu.stanford.smi.protege.util.PropertyList
setInvalid() - Method in class edu.stanford.smi.protege.util.DefaultRenderer
setInvalidValueBorder() - Method in class edu.stanford.smi.protege.widget.AbstractSlotWidget
setInverseSlot(Slot, Slot) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
setInverseSlot(Slot) - Method in class edu.stanford.smi.protege.model.DefaultSlot
setInverseSlot(Slot, Slot) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
setInverseSlot(Slot) - Method in interface edu.stanford.smi.protege.model.Slot
setIsLoaded(boolean) - Method in class edu.stanford.smi.protege.util.LazyTreeNode
  Do not call this method unless you know exactly what you are doing.
setIsReadonly(boolean) - Method in class edu.stanford.smi.protege.model.Project
setIsTemplate(PreparedStatement, int, boolean) - Static method in class edu.stanford.smi.protege.storage.database.DatabaseUtils
setJournalingEnabled(boolean) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
setJournalingEnabled(boolean) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreManager
setJournalingEnabled(boolean) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
setJournalingEnabled(boolean) - Method in class edu.stanford.smi.protege.model.Project
setKnowledgeBaseFactory(KnowledgeBaseFactory) - Method in class edu.stanford.smi.protege.model.Project
setKnowledgeBaseFactory(KnowledgeBaseFactory) - Method in class edu.stanford.smi.protege.plugin.AbstractCreateProjectPlugin
setKnowledgeBaseFactory(KnowledgeBaseFactory) - Method in interface edu.stanford.smi.protege.plugin.CreateProjectPlugin
setKnowledgeBases(KnowledgeBase, KnowledgeBase) - Method in class edu.stanford.smi.protege.model.Project
setLabel(String) - Method in class edu.stanford.smi.protege.model.WidgetDescriptor
setLabel(String) - Method in class edu.stanford.smi.protege.widget.AbstractTabWidget
setLabel(String) - Method in class edu.stanford.smi.protege.widget.AbstractWidget
setLabel(String) - Method in class edu.stanford.smi.protege.widget.CheckBoxWidget
setLabel(String) - Method in class edu.stanford.smi.protege.widget.ComboBoxWidget
setLabel(String) - Method in interface edu.stanford.smi.protege.widget.Widget
setLastAccess(Date) - Method in class edu.stanford.smi.protege.server.metaproject.impl.UserImpl
setLastAccess(Date) - Method in interface edu.stanford.smi.protege.server.metaproject.User
setLastFileDirectory(File) - Static method in class edu.stanford.smi.protege.util.ApplicationProperties
setLastHeartbeat(long) - Method in class edu.stanford.smi.protege.server.framestore.Registration
setLastLoadedURI(URI) - Static method in class edu.stanford.smi.protege.util.ApplicationProperties
setLastLogin(Date) - Method in class edu.stanford.smi.protege.server.metaproject.impl.UserImpl
setLastLogin(Date) - Method in interface edu.stanford.smi.protege.server.metaproject.User
setListenerNotificationEnabled(boolean) - Method in class edu.stanford.smi.protege.util.SelectableList
setListRenderer(ListCellRenderer) - Method in class edu.stanford.smi.protege.ui.DirectInstancesList
setListValues(JList, Collection) - Static method in class edu.stanford.smi.protege.util.ComponentUtilities
setLoading(boolean) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
  TODO implement or deprecate setLoading
setLocale(Locale) - Static method in class edu.stanford.smi.protege.util.ApplicationProperties
setLocation(String) - Method in class edu.stanford.smi.protege.server.metaproject.impl.ProjectInstanceImpl
setLocation(String) - Method in interface edu.stanford.smi.protege.server.metaproject.ProjectInstance
setLogger(Logger, String) - Method in class edu.stanford.smi.protege.server.util.FifoWriter
setLoggingLevel(Class<?>, Level) - Static method in class edu.stanford.smi.protege.util.Log
  This method is to ease the debugging of junits.
setLongValue(PreparedStatement, int, Object) - Static method in class edu.stanford.smi.protege.storage.database.DatabaseUtils
setLookAndFeel(String) - Method in class edu.stanford.smi.protege.ui.ProjectManager
setLookAndFeel(String) - Static method in class edu.stanford.smi.protege.util.ApplicationProperties
setLookAndFeel(String) - Static method in class edu.stanford.smi.protege.util.SystemUtilities
setMainIcon(Icon) - Method in class edu.stanford.smi.protege.ui.FrameRenderer
setMainIcon(Icon) - Method in class edu.stanford.smi.protege.util.DefaultRenderer
setMainText(String) - Method in class edu.stanford.smi.protege.util.DefaultRenderer
setMaximumCardinality(Slot, int) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
setMaximumCardinality(int) - Method in class edu.stanford.smi.protege.model.DefaultSlot
setMaximumCardinality(Slot, int) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
setMaximumCardinality(int) - Method in interface edu.stanford.smi.protege.model.Slot
setMaximumValue(Slot, Number) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
setMaximumValue(Number) - Method in class edu.stanford.smi.protege.model.DefaultSlot
setMaximumValue(Slot, Number) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
setMaximumValue(Number) - Method in interface edu.stanford.smi.protege.model.Slot
setMembers(Collection<User>) - Method in interface edu.stanford.smi.protege.server.metaproject.Group
setMembers(Collection<User>) - Method in class edu.stanford.smi.protege.server.metaproject.impl.GroupImpl
setMessage(String) - Method in class edu.stanford.smi.protege.util.MessageError
setMetaProjectInstance(ProjectInstance) - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
setMinimumCardinality(Slot, int) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
setMinimumCardinality(int) - Method in class edu.stanford.smi.protege.model.DefaultSlot
setMinimumCardinality(Slot, int) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
setMinimumCardinality(int) - Method in interface edu.stanford.smi.protege.model.Slot
setMinimumValue(Slot, Number) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
setMinimumValue(Number) - Method in class edu.stanford.smi.protege.model.DefaultSlot
setMinimumValue(Slot, Number) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
setMinimumValue(Number) - Method in interface edu.stanford.smi.protege.model.Slot
setMnemonic(int) - Method in class edu.stanford.smi.protege.util.StandardAction
setMnemonic(Action, int) - Static method in class edu.stanford.smi.protege.util.StandardAction
setModel(LazyTreeModel) - Method in class edu.stanford.smi.protege.util.LazyTreeRoot
setModifiable(boolean) - Static method in class edu.stanford.smi.protege.storage.database.DefaultDatabaseFrameDb
setModificationRecordUpdatingEnabled(boolean) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
setModificationRecordUpdatingEnabled(boolean) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreManager
setModificationRecordUpdatingEnabled(boolean) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
setModified(boolean) - Method in class edu.stanford.smi.protege.widget.FormWidget
SetMultiMap<X,Y> - Class in edu.stanford.smi.protege.util
  Multimap implementation where the value collection is a set.
SetMultiMap() - Constructor for class edu.stanford.smi.protege.util.SetMultiMap
SetMultiMap(int) - Constructor for class edu.stanford.smi.protege.util.SetMultiMap
setName(String) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
setName(String) - Method in class edu.stanford.smi.protege.model.framestore.ClosureCachingBasicFrameStore
setName(String) - Method in class edu.stanford.smi.protege.model.framestore.ImmutableNamesNarrowFrameStore
setName(String) - Method in class edu.stanford.smi.protege.model.framestore.InMemoryFrameDb
setName(String) - Method in class edu.stanford.smi.protege.model.framestore.MergingNarrowFrameStore
setName(String) - Method in interface edu.stanford.smi.protege.model.framestore.NarrowFrameStore
  The Narrow Frame store has a standard set/get name interface.
setName(String) - Method in class edu.stanford.smi.protege.model.framestore.PlaceHolderNarrowFrameStore
setName(String) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
setName(String) - Method in class edu.stanford.smi.protege.model.WidgetDescriptor
setName(String) - Method in interface edu.stanford.smi.protege.server.metaproject.Group
setName(String) - Method in class edu.stanford.smi.protege.server.metaproject.impl.OperationImpl
setName(String) - Method in class edu.stanford.smi.protege.server.metaproject.impl.PolicyControlledObjectCollectionImpl
setName(String) - Method in class edu.stanford.smi.protege.server.metaproject.impl.PolicyControlledObjectImpl
setName(String) - Method in class edu.stanford.smi.protege.server.metaproject.impl.UnbackedOperationImpl
setName(String) - Method in class edu.stanford.smi.protege.server.metaproject.impl.UserImpl
setName(String) - Method in interface edu.stanford.smi.protege.server.metaproject.Operation
setName(String) - Method in interface edu.stanford.smi.protege.server.metaproject.PolicyControlledObject
setName(String) - Method in interface edu.stanford.smi.protege.server.metaproject.PolicyControlledObjectCollection
setName(String) - Method in interface edu.stanford.smi.protege.server.metaproject.User
setName(String, RemoteSession) - Method in interface edu.stanford.smi.protege.server.narrowframestore.RemoteServerNarrowFrameStore
setName(String, RemoteSession) - Method in class edu.stanford.smi.protege.server.narrowframestore.ServerNarrowFrameStore
setName(String) - Method in class edu.stanford.smi.protege.storage.database.AbstractDatabaseFrameDb
setName(String) - Method in class edu.stanford.smi.protege.storage.database.IdleConnectionNarrowFrameStore
setName(String) - Method in class edu.stanford.smi.protege.storage.database.ValueCachingNarrowFrameStore
setName(String) - Method in class edu.stanford.smi.protege.util.StandardAction
setName(Action, String) - Static method in class edu.stanford.smi.protege.util.StandardAction
setNewest() - Method in class edu.stanford.smi.protege.server.framestore.background.WorkInfo
setNewProjectPath(String) - Method in class edu.stanford.smi.protege.plugin.AbstractBackendExportPlugin
setNextFrameNumber(int) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
  Deprecated. This functionality is no longer available
setNextFrameNumber(int) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
setNormalBorder() - Method in class edu.stanford.smi.protege.widget.AbstractSlotWidget
setNormalForegroundColor(Color) - Method in class edu.stanford.smi.protege.util.DefaultRenderer
setNotificationsEnabled(boolean) - Method in class edu.stanford.smi.protege.util.SelectableContainer
setNullLongValue(PreparedStatement, int) - Static method in class edu.stanford.smi.protege.storage.database.DatabaseUtils
setOutputFolder(File) - Method in interface edu.stanford.smi.protege.code.generator.wrapping.EditableJavaCodeGeneratorOptions
setOutputFolder(File) - Method in class edu.stanford.smi.protege.code.generator.wrapping.ProjectBasedJavaCodeGeneratorOptions
setOwlMode(boolean) - Method in class edu.stanford.smi.protege.storage.database.DatabaseKnowledgeBaseFactory
setOwner(User) - Method in class edu.stanford.smi.protege.server.metaproject.impl.ProjectInstanceImpl
setOwner(User) - Method in interface edu.stanford.smi.protege.server.metaproject.ProjectInstance
setOwners(Set<User>) - Method in class edu.stanford.smi.protege.server.metaproject.impl.ProjectInstanceImpl
setOwners(Set<User>) - Method in interface edu.stanford.smi.protege.server.metaproject.ProjectInstance
setOwnFacetValue(Slot, Facet, Object) - Method in class edu.stanford.smi.protege.model.DefaultFrame
setOwnFacetValue(Slot, Facet, Object) - Method in interface edu.stanford.smi.protege.model.Frame
  See `Frame`for a description of the value type.
setOwnFacetValues(Slot, Facet, Collection) - Method in class edu.stanford.smi.protege.model.DefaultFrame
setOwnFacetValues(Slot, Facet, Collection) - Method in interface edu.stanford.smi.protege.model.Frame
  See `Frame`for a description of the value type.
setOwnSlotValue(Slot, Object) - Method in class edu.stanford.smi.protege.model.DefaultFrame
setOwnSlotValue(Frame, Slot, Object) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
  Deprecated. renamed to #setDirectOwnSlotValue
setOwnSlotValue(Slot, Object) - Method in interface edu.stanford.smi.protege.model.Frame
  See `Frame`for a description of the value type.
setOwnSlotValue(Frame, String, Object) - Static method in class edu.stanford.smi.protege.model.ModelUtilities
setOwnSlotValues(Slot, Collection) - Method in class edu.stanford.smi.protege.model.DefaultFrame
setOwnSlotValues(Frame, Slot, Collection) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
  Deprecated. renamed to setDirectOwnSlotValues
setOwnSlotValues(Slot, Collection) - Method in interface edu.stanford.smi.protege.model.Frame
  See `Frame`for a description of the value type.
setOwnSlotValues(Frame, Slot, Collection) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
  same as #setDirectOwnSlotValues(Frame, Slot, Collection)
setOwnSlotValues(Frame, String, Collection) - Static method in class edu.stanford.smi.protege.model.ModelUtilities
setPackage(String) - Method in interface edu.stanford.smi.protege.code.generator.wrapping.EditableJavaCodeGeneratorOptions
setPackage(String) - Method in class edu.stanford.smi.protege.code.generator.wrapping.ProjectBasedJavaCodeGeneratorOptions
setPage(JEditorPane, URL) - Static method in class edu.stanford.smi.protege.util.ComponentFactory
setPageComplete(boolean) - Method in class edu.stanford.smi.protege.util.WizardPage
  Marks this page as "complete" (requiring no further input).
setPassThrough(boolean) - Method in class edu.stanford.smi.protege.model.framestore.EventDispatchFrameStore
setPassword(String) - Method in class edu.stanford.smi.protege.server.metaproject.impl.UserImpl
setPassword(String) - Method in interface edu.stanford.smi.protege.server.metaproject.User
setPassword(String) - Method in class edu.stanford.smi.protege.storage.database.DatabaseCreateProjectPlugin
setPassword(PropertyList, String) - Static method in class edu.stanford.smi.protege.storage.database.DatabaseKnowledgeBaseFactory
setPassword(String) - Method in interface edu.stanford.smi.protege.storage.database.DatabasePlugin
setPath(String) - Method in class edu.stanford.smi.protege.util.FileField
setPlugin(CreateProjectPlugin) - Method in class edu.stanford.smi.protege.plugin.CreateProjectWizard
setPolicyModifiableByClient(boolean) - Method in class edu.stanford.smi.protege.server.metaproject.impl.PolicyControlledObjectImpl
setPolicyModifiableByClient(boolean) - Method in interface edu.stanford.smi.protege.server.metaproject.PolicyControlledObject
setPollForEvents(boolean) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
setPollForEvents(boolean) - Method in class edu.stanford.smi.protege.model.framestore.EventDispatchFrameStore
setPollForEvents(boolean) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreManager
setPollForEvents(boolean) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
setPossibleSlots(Collection<Slot>) - Method in class edu.stanford.smi.protege.ui.ExportConfigurationPanel
  Give a chance to other parts of the code to set the slots that will show up when clicking on the "Add Slot" button
setPostingEnabled(boolean) - Method in class edu.stanford.smi.protege.util.ListenerCollection
setPreCacheBackLog(Map<RemoteSession, Integer>) - Method in class edu.stanford.smi.protege.server.framestore.background.FrameCalculator.FrameCalculatorStatsImpl
SetPreferences - Class in edu.stanford.smi.protege.action
  Bring up the configuration panel for the current project.
SetPreferences() - Constructor for class edu.stanford.smi.protege.action.SetPreferences
setPreferredColumns(int) - Method in class edu.stanford.smi.protege.widget.AbstractSlotWidget
setPreferredRows(int) - Method in class edu.stanford.smi.protege.widget.AbstractSlotWidget
setPreferredSize(Dimension) - Method in class edu.stanford.smi.protege.widget.AbstractSlotWidget
setPrettyPrintSlotWidgetLabels(boolean) - Method in class edu.stanford.smi.protege.model.Project
setPrettyPrintSlotWidgetLabels(boolean) - Static method in class edu.stanford.smi.protege.util.ApplicationProperties
setProject(Project) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
setProject(Project) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
setProjectFilePath(String) - Method in class edu.stanford.smi.protege.model.Project
setProjectStatus(String, ServerProject.ProjectStatus, RemoteSession) - Method in interface edu.stanford.smi.protege.server.RemoteServer
setProjectStatus(String, ServerProject.ProjectStatus) - Method in class edu.stanford.smi.protege.server.Server
setProjectStatus(String, ServerProject.ProjectStatus, RemoteSession) - Method in class edu.stanford.smi.protege.server.Server
setProjectURI(URI) - Method in class edu.stanford.smi.protege.model.Project
setProperties(Properties) - Method in class edu.stanford.smi.protege.widget.PropertiesTableModel
setProperty(DatabaseProperty, String) - Static method in enum edu.stanford.smi.protege.storage.database.DatabaseProperty
setPropertyList(PropertyList) - Method in class edu.stanford.smi.protege.model.WidgetDescriptor
setPropertyList(PropertyList) - Method in class edu.stanford.smi.protege.widget.AbstractWidget
setPropertyName(String) - Method in class edu.stanford.smi.protege.server.metaproject.impl.PropertyValueImpl
setPropertyName(String) - Method in interface edu.stanford.smi.protege.server.metaproject.PropertyValue
setPropertyValue(String) - Method in class edu.stanford.smi.protege.server.metaproject.impl.PropertyValueImpl
setPropertyValue(String, String) - Method in class edu.stanford.smi.protege.server.metaproject.impl.WrappedProtegeInstanceWithPropsImpl
  Will replace any existing PropertyValue sharing the same propertyName with the PropertyValue passed in.
setPropertyValue(String) - Method in interface edu.stanford.smi.protege.server.metaproject.PropertyValue
setPropertyValue(String, String) - Method in interface edu.stanford.smi.protege.server.metaproject.User
setPropertyValues(Collection<PropertyValue>) - Method in interface edu.stanford.smi.protege.server.metaproject.GroupOperation
setPropertyValues(Collection<PropertyValue>) - Method in class edu.stanford.smi.protege.server.metaproject.impl.GroupOperationImpl
setPropertyValues(Collection<PropertyValue>) - Method in class edu.stanford.smi.protege.server.metaproject.impl.OperationImpl
setPropertyValues(Collection<PropertyValue>) - Method in class edu.stanford.smi.protege.server.metaproject.impl.UnbackedOperationImpl
  Performs no operation.
setPropertyValues(Collection<PropertyValue>) - Method in class edu.stanford.smi.protege.server.metaproject.impl.WrappedProtegeInstanceWithPropsImpl
setPropertyValues(Collection<PropertyValue>) - Method in interface edu.stanford.smi.protege.server.metaproject.Operation
setPropertyValues(Collection<PropertyValue>) - Method in interface edu.stanford.smi.protege.server.metaproject.PolicyControlledObject
setPropertyValues(Collection<PropertyValue>) - Method in interface edu.stanford.smi.protege.server.metaproject.User
setPrototypeInstance(FrameRenderer) - Static method in class edu.stanford.smi.protege.ui.FrameRenderer
setPrototypeInstance(SlotPairRenderer) - Static method in class edu.stanford.smi.protege.ui.SlotPairRenderer
setQueryAllFrameStores(boolean) - Method in class edu.stanford.smi.protege.model.framestore.MergingNarrowFrameStore
setReadEncodingOverride(String) - Static method in class edu.stanford.smi.protege.util.FileUtilities
setReadOnlyWidget(boolean) - Method in class edu.stanford.smi.protege.widget.AbstractSlotWidget
setRectangle(Instance, Rectangle) - Static method in class edu.stanford.smi.protege.util.InstanceUtilities
setRectangle(String, Rectangle) - Method in class edu.stanford.smi.protege.util.PropertyList
setRemoveFrameStores(Collection<NarrowFrameStore>) - Method in class edu.stanford.smi.protege.model.framestore.MergingNarrowFrameStore
  Set frame stores to remove values from.
setRenderer(DefaultRenderer) - Method in class edu.stanford.smi.protege.ui.ClsesPanel
setRenderer(DefaultRenderer) - Method in class edu.stanford.smi.protege.ui.SubclassPane
setRenderer(DefaultRenderer) - Method in class edu.stanford.smi.protege.ui.SubslotPane
setRenderer(ListCellRenderer) - Method in class edu.stanford.smi.protege.widget.AbstractListWidget
setRenderer(TreeCellRenderer) - Method in class edu.stanford.smi.protege.widget.AbstractTreeWidget
setRenderer(ListCellRenderer) - Method in class edu.stanford.smi.protege.widget.ComboBoxWidget
setReplacementEvent(boolean) - Method in interface edu.stanford.smi.protege.event.Event
setReplacementEvent(boolean) - Method in class edu.stanford.smi.protege.util.AbstractEvent
  This call allows the caller to indicate that this event was generated during a replaceFrame operation.
setResizeVertically(boolean) - Method in class edu.stanford.smi.protege.ui.InstanceDisplay
setResizeVertically(boolean) - Method in class edu.stanford.smi.protege.util.ResizingLayout
setResizeVertically(boolean) - Method in class edu.stanford.smi.protege.widget.FormWidget
setRoot(TreeNode) - Method in class edu.stanford.smi.protege.util.LazyTreeModel
setRoot(LazyTreeRoot) - Method in class edu.stanford.smi.protege.util.SelectableTree
setRoot(X) - Method in class edu.stanford.smi.protege.util.Tree
setRootPane(JRootPane) - Method in class edu.stanford.smi.protege.ui.ProjectManager
setSaveIntervalMsec(int) - Method in class edu.stanford.smi.protege.server.Server
setSelectable(Selectable) - Method in class edu.stanford.smi.protege.util.SelectableContainer
setSelectedBorder() - Method in class edu.stanford.smi.protege.widget.AbstractSlotWidget
setSelectedBorder(Color) - Method in class edu.stanford.smi.protege.widget.AbstractSlotWidget
setSelectedCls(Cls) - Method in class edu.stanford.smi.protege.ui.ClsesPanel
setSelectedCls(Cls) - Method in class edu.stanford.smi.protege.ui.SubclassPane
setSelectedCls(Cls) - Method in class edu.stanford.smi.protege.widget.FormsTab
  Selects a given Cls in the classes tree.
setSelectedCls(Cls) - Method in class edu.stanford.smi.protege.widget.InstanceClsesPanel
setSelectedCls(Cls) - Method in class edu.stanford.smi.protege.widget.InstancesTab
setSelectedClses(Collection) - Method in class edu.stanford.smi.protege.ui.SubclassPane
setSelectedInstance(Instance) - Method in class edu.stanford.smi.protege.ui.DirectInstancesList
setSelectedInstance(Instance) - Method in class edu.stanford.smi.protege.widget.InstancesTab
setSelectedNode(JTree, TreeNode) - Static method in class edu.stanford.smi.protege.util.ComponentUtilities
setSelectedNode(KnowledgeBase, JTree, FrameWithBrowserText) - Static method in class edu.stanford.smi.protege.util.ComponentUtilities
setSelectedNode(X) - Method in class edu.stanford.smi.protege.util.TreeSelectionHelper
setSelectedObjectPath(JTree, Collection) - Static method in class edu.stanford.smi.protege.util.ComponentUtilities
setSelectedObjectPath(Collection) - Method in class edu.stanford.smi.protege.widget.AbstractTreeWidget
setSelectedObjectPaths(JTree, Collection) - Static method in class edu.stanford.smi.protege.util.ComponentUtilities
setSelectedSlot(Slot) - Method in class edu.stanford.smi.protege.ui.SubslotPane
setSelectedTab(TabWidget) - Method in class edu.stanford.smi.protege.ui.ProjectView
setSelectedValue(JList, Object) - Static method in class edu.stanford.smi.protege.util.ComponentUtilities
setSelectedValue(Object) - Method in class edu.stanford.smi.protege.util.SelectableList
setSelectedValues(JList, Collection) - Static method in class edu.stanford.smi.protege.util.ComponentUtilities
setSelection(Cls) - Method in class edu.stanford.smi.protege.ui.ClsInverseRelationshipPanel
setSelection(Collection) - Method in interface edu.stanford.smi.protege.util.MutableSelectable
setSelection(JComponent, int, int) - Method in class edu.stanford.smi.protege.util.PopupMenuMouseListener
setSelection(JComponent, int, int) - Method in class edu.stanford.smi.protege.util.TablePopupMenuMouseListener
setSelection(JComponent, int, int) - Method in class edu.stanford.smi.protege.util.TreePopupMenuMouseListener
setSelection(Object) - Method in class edu.stanford.smi.protege.widget.AbstractListWidget
setSelection(Object) - Method in class edu.stanford.smi.protege.widget.FormWidget
setSelection(Cls) - Method in class edu.stanford.smi.protege.widget.InstanceValuesComponent
setSelectionInterval(int, int) - Method in class edu.stanford.smi.protege.util.SelectableList
setSession(RemoteSession) - Method in class edu.stanford.smi.protege.server.framestore.background.ClientAndFrame
setSetMode(boolean) - Method in interface edu.stanford.smi.protege.code.generator.wrapping.EditableJavaCodeGeneratorOptions
setSetMode(boolean) - Method in class edu.stanford.smi.protege.code.generator.wrapping.ProjectBasedJavaCodeGeneratorOptions
setSeverity(MessageError.Severity) - Method in class edu.stanford.smi.protege.util.MessageError
setShortcut(int) - Method in class edu.stanford.smi.protege.util.StandardAction
setShortcut(Action, int) - Static method in class edu.stanford.smi.protege.util.StandardAction
setShortDescription(String) - Method in class edu.stanford.smi.protege.widget.AbstractTabWidget
setShortMatchValue(PreparedStatement, int, int, String, char) - Static method in class edu.stanford.smi.protege.storage.database.DatabaseUtils
setShortValue(PreparedStatement, int, int, Object, FrameFactory) - Static method in class edu.stanford.smi.protege.storage.database.DatabaseUtils
setShowDisplaySlotPanel(boolean) - Method in class edu.stanford.smi.protege.ui.DirectInstancesList
  Deprecated.
setShowExportedClasses(boolean) - Method in class edu.stanford.smi.protege.ui.ExportConfigurationPanel
setShowExportSuperclasses(boolean) - Method in class edu.stanford.smi.protege.ui.ExportConfigurationPanel
setShowIncludedProjects(boolean) - Method in class edu.stanford.smi.protege.model.KnowledgeBaseSourcesEditor
setShowInstanceListener(ShowInstanceListener) - Method in class edu.stanford.smi.protege.widget.AbstractSlotWidget
setShowNewInstances(boolean) - Method in class edu.stanford.smi.protege.widget.InstanceFieldWidget
setShowNewInstances(boolean) - Method in class edu.stanford.smi.protege.widget.InstanceListWidget
setShowProject(boolean) - Method in class edu.stanford.smi.protege.model.KnowledgeBaseSourcesEditor
setShowStack(boolean) - Method in class edu.stanford.smi.protege.util.DefaultLogger
setSkipDirectInstances(boolean) - Method in class edu.stanford.smi.protege.server.framestore.background.WorkInfo
setSlot(PreparedStatement, int, Slot) - Static method in class edu.stanford.smi.protege.storage.database.DatabaseUtils
setSlot(Slot) - Method in class edu.stanford.smi.protege.ui.SlotClsesPanel
setSlot(Slot) - Method in class edu.stanford.smi.protege.widget.AbstractSlotWidget
setSlot(Slot, Slot) - Method in class edu.stanford.smi.protege.widget.SuperslotsPanel
setSlotsDelimiter(String) - Method in class edu.stanford.smi.protege.action.ExportToCsvAction
setSlotsDelimiter(String) - Static method in class edu.stanford.smi.protege.action.ExportToCsvUtil
setSlotsToExport(Collection<Slot>) - Method in class edu.stanford.smi.protege.action.ExportToCsvAction
setSlotValue(Slot, Object) - Method in class edu.stanford.smi.protege.code.generator.wrapping.AbstractWrappedInstance
setSlotValue(MetaProjectImpl.SlotEnum, Object) - Method in class edu.stanford.smi.protege.server.metaproject.impl.WrappedProtegeInstanceImpl
setSlotValues(Slot, Collection<?>) - Method in class edu.stanford.smi.protege.code.generator.wrapping.AbstractWrappedInstance
setSlotValuesAsProtegeInstances(MetaProjectImpl.SlotEnum, Collection) - Method in class edu.stanford.smi.protege.server.metaproject.impl.WrappedProtegeInstanceImpl
setSlotValuesDelimiter(String) - Method in class edu.stanford.smi.protege.action.ExportToCsvAction
setSlotValuesDelimiter(String) - Static method in class edu.stanford.smi.protege.action.ExportToCsvUtil
setSmallLabelFont(JLabel) - Static method in class edu.stanford.smi.protege.util.ComponentUtilities
setSortClassTreeOption(boolean) - Static method in class edu.stanford.smi.protege.util.ApplicationProperties
setSortSlotTreeOption(boolean) - Static method in class edu.stanford.smi.protege.util.ApplicationProperties
setSource(Object) - Method in class edu.stanford.smi.protege.util.AbstractEvent
setSourceFile(PropertyList, String) - Static method in class edu.stanford.smi.protege.storage.xml.XMLKnowledgeBaseFactory
setSourceFiles(PropertyList, String, String) - Static method in class edu.stanford.smi.protege.storage.clips.ClipsKnowledgeBaseFactory
setSources(PropertyList, String, String, String, String, String) - Static method in class edu.stanford.smi.protege.storage.database.DatabaseKnowledgeBaseFactory
setSourceURIs(PropertyList, URI, URI) - Static method in class edu.stanford.smi.protege.storage.clips.ClipsKnowledgeBaseFactory
setSourceURIs(PropertyList, URI) - Static method in class edu.stanford.smi.protege.storage.xml.XMLKnowledgeBaseFactory
setStartPosting(Object) - Method in class edu.stanford.smi.protege.util.ListenerCollection
setStartPosting(Object) - Method in class edu.stanford.smi.protege.util.ListenerList
setStartPosting(Object) - Method in class edu.stanford.smi.protege.util.ListenerMap
setStateMachine(ServerCacheStateMachine) - Method in class edu.stanford.smi.protege.server.framestore.background.FrameCalculator
setString(String, String) - Static method in class edu.stanford.smi.protege.util.ApplicationProperties
setString(String, String) - Method in class edu.stanford.smi.protege.util.PropertyList
setSuppressDuplicates(boolean) - Method in class edu.stanford.smi.protege.model.framestore.MergingNarrowFrameStore
setSuppressInstanceCounting(boolean) - Method in class edu.stanford.smi.protege.model.Project
setSystem(boolean) - Method in class edu.stanford.smi.protege.model.DefaultFrame
setTabbedInstanceFormLayout(boolean) - Method in class edu.stanford.smi.protege.model.Project
setTable(String) - Method in class edu.stanford.smi.protege.storage.database.DatabaseCreateProjectPlugin
setTable(String) - Method in interface edu.stanford.smi.protege.storage.database.DatabasePlugin
setTablename(PropertyList, String) - Static method in class edu.stanford.smi.protege.storage.database.DatabaseKnowledgeBaseFactory
setTabSize(int) - Method in class edu.stanford.smi.protege.storage.clips.SimpleCharStream
setTabWidgetDescriptorOrder(Collection) - Method in class edu.stanford.smi.protege.model.Project
setTargetFullCache(boolean) - Method in class edu.stanford.smi.protege.server.framestore.background.WorkInfo
setTemplateFacetValue(Slot, Facet, Object) - Method in interface edu.stanford.smi.protege.model.Cls
  see `Frame` for a description of the value type
setTemplateFacetValue(Slot, Facet, Object) - Method in class edu.stanford.smi.protege.model.DefaultCls
setTemplateFacetValue(Cls, Slot, Facet, Object) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
  Deprecated. renamed to #setDirectTemplateFacetValue
setTemplateFacetValue(Cls, Slot, Facet, Object) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
setTemplateFacetValue(Cls, Slot, String, Object) - Static method in class edu.stanford.smi.protege.model.ModelUtilities
setTemplateFacetValues(Slot, Facet, Collection) - Method in interface edu.stanford.smi.protege.model.Cls
  see `Frame` for a description of the value type
setTemplateFacetValues(Slot, Facet, Collection) - Method in class edu.stanford.smi.protege.model.DefaultCls
setTemplateFacetValues(Cls, Slot, Facet, Collection) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
  Deprecated. renamed to #setDirectTemplateFacetValues
setTemplateFacetValues(Cls, Slot, Facet, Collection) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
setTemplateFacetValues(Cls, Slot, String, Collection) - Static method in class edu.stanford.smi.protege.model.ModelUtilities
setTemplateSlotAllowedClses(Slot, Collection) - Method in interface edu.stanford.smi.protege.model.Cls
setTemplateSlotAllowedClses(Slot, Collection) - Method in class edu.stanford.smi.protege.model.DefaultCls
setTemplateSlotAllowedClses(Cls, Slot, Collection) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
setTemplateSlotAllowedClses(Cls, Slot, Collection) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
setTemplateSlotAllowedParents(Slot, Collection) - Method in interface edu.stanford.smi.protege.model.Cls
setTemplateSlotAllowedParents(Slot, Collection) - Method in class edu.stanford.smi.protege.model.DefaultCls
setTemplateSlotAllowedParents(Cls, Slot, Collection) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
setTemplateSlotAllowedParents(Cls, Slot, Collection) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
setTemplateSlotAllowedValues(Slot, Collection) - Method in interface edu.stanford.smi.protege.model.Cls
setTemplateSlotAllowedValues(Slot, Collection) - Method in class edu.stanford.smi.protege.model.DefaultCls
setTemplateSlotAllowedValues(Cls, Slot, Collection) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
setTemplateSlotAllowedValues(Cls, Slot, Collection) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
setTemplateSlotAllowsMultipleValues(Slot, boolean) - Method in interface edu.stanford.smi.protege.model.Cls
setTemplateSlotAllowsMultipleValues(Slot, boolean) - Method in class edu.stanford.smi.protege.model.DefaultCls
setTemplateSlotAllowsMultipleValues(Cls, Slot, boolean) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
setTemplateSlotAllowsMultipleValues(Cls, Slot, boolean) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
setTemplateSlotDefaultValues(Slot, Collection) - Method in interface edu.stanford.smi.protege.model.Cls
  see `Frame` for a description of the value type
setTemplateSlotDefaultValues(Slot, Collection) - Method in class edu.stanford.smi.protege.model.DefaultCls
setTemplateSlotDefaultValues(Cls, Slot, Collection) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
setTemplateSlotDefaultValues(Cls, Slot, Collection) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
setTemplateSlotDocumentation(Slot, String) - Method in interface edu.stanford.smi.protege.model.Cls
setTemplateSlotDocumentation(Slot, Collection) - Method in interface edu.stanford.smi.protege.model.Cls
setTemplateSlotDocumentation(Slot, String) - Method in class edu.stanford.smi.protege.model.DefaultCls
setTemplateSlotDocumentation(Slot, Collection) - Method in class edu.stanford.smi.protege.model.DefaultCls
setTemplateSlotDocumentation(Cls, Slot, String) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
setTemplateSlotDocumentation(Cls, Slot, Collection) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
setTemplateSlotDocumentation(Cls, Slot, String) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
setTemplateSlotDocumentation(Cls, Slot, Collection) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
setTemplateSlotMaximumCardinality(Slot, int) - Method in interface edu.stanford.smi.protege.model.Cls
  sets the maximum cardinality.
setTemplateSlotMaximumCardinality(Slot, int) - Method in class edu.stanford.smi.protege.model.DefaultCls
setTemplateSlotMaximumCardinality(Cls, Slot, int) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
setTemplateSlotMaximumCardinality(Cls, Slot, int) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
setTemplateSlotMaximumValue(Slot, Number) - Method in interface edu.stanford.smi.protege.model.Cls
  sets the maximum slot value.
setTemplateSlotMaximumValue(Slot, Number) - Method in class edu.stanford.smi.protege.model.DefaultCls
setTemplateSlotMaximumValue(Cls, Slot, Number) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
setTemplateSlotMaximumValue(Cls, Slot, Number) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
setTemplateSlotMinimumCardinality(Slot, int) - Method in interface edu.stanford.smi.protege.model.Cls
  sets the minimum cardinality
setTemplateSlotMinimumCardinality(Slot, int) - Method in class edu.stanford.smi.protege.model.DefaultCls
setTemplateSlotMinimumCardinality(Cls, Slot, int) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
setTemplateSlotMinimumCardinality(Cls, Slot, int) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
setTemplateSlotMinimumValue(Slot, Number) - Method in interface edu.stanford.smi.protege.model.Cls
setTemplateSlotMinimumValue(Slot, Number) - Method in class edu.stanford.smi.protege.model.DefaultCls
setTemplateSlotMinimumValue(Cls, Slot, Number) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
setTemplateSlotMinimumValue(Cls, Slot, Number) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
setTemplateSlotValue(Slot, Object) - Method in interface edu.stanford.smi.protege.model.Cls
  see `Frame` for a description of the value type
setTemplateSlotValue(Slot, Object) - Method in class edu.stanford.smi.protege.model.DefaultCls
setTemplateSlotValue(Cls, Slot, Object) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
setTemplateSlotValue(Cls, Slot, Object) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
setTemplateSlotValues(Slot, Collection) - Method in interface edu.stanford.smi.protege.model.Cls
  see `Frame` for a description of the value type
setTemplateSlotValues(Slot, Collection) - Method in class edu.stanford.smi.protege.model.DefaultCls
setTemplateSlotValues(Cls, Slot, Collection) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
  Deprecated. renamed to #setDirectTemplateSlotValues
setTemplateSlotValues(Cls, Slot, Collection) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
setTemplateSlotValueType(Slot, ValueType) - Method in interface edu.stanford.smi.protege.model.Cls
setTemplateSlotValueType(Slot, ValueType) - Method in class edu.stanford.smi.protege.model.DefaultCls
setTemplateSlotValueType(Cls, Slot, ValueType) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
setTemplateSlotValueType(Cls, Slot, ValueType) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
setTemporary(boolean) - Method in class edu.stanford.smi.protege.model.WidgetDescriptor
setTerminalFrameStore(FrameStore) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
setTerminalFrameStore(FrameStore) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreManager
setText(String) - Method in class edu.stanford.smi.protege.widget.TextComponentWidget
setTimeStamp(long) - Method in interface edu.stanford.smi.protege.event.Event
setTimeStamp(long) - Method in class edu.stanford.smi.protege.util.AbstractEvent
setTitle(String) - Method in class edu.stanford.smi.protege.ui.HeaderComponent
setTitle(String, boolean) - Method in class edu.stanford.smi.protege.ui.HeaderComponent
setTitleLabelFont(JLabel) - Static method in class edu.stanford.smi.protege.util.ComponentUtilities
setTopFrameStore(String) - Method in class edu.stanford.smi.protege.model.framestore.MergingNarrowFrameStore
  Sets the top frame store, used to decide the root below which all framesstores are "available".
setTopLevelInstance(Instance) - Method in class edu.stanford.smi.protege.widget.KAToolTab
setTransactionIsolationLevel(KnowledgeBase, TransactionIsolationLevel) - Static method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
setTransactionIsolationLevel(TransactionIsolationLevel) - Method in class edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore
setTransactionIsolationLevel(TransactionIsolationLevel) - Method in interface edu.stanford.smi.protege.server.framestore.RemoteServerFrameStore
  Sets the transaction isolation level for the current connection.
setTransactionIsolationLevel(TransactionIsolationLevel) - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
setTransactionIsolationLevel(int) - Method in class edu.stanford.smi.protege.storage.database.RobustConnection
setTransactionIsolationLevel(TransactionIsolationLevel) - Method in class edu.stanford.smi.protege.util.transaction.TransactionMonitor
  Sets the transaction isolation level for the current connection.
setTreeLineStyle(JTree) - Static method in class edu.stanford.smi.protege.util.LookAndFeelUtil
setTypes(Collection<Cls>) - Method in class edu.stanford.smi.protege.util.FrameWithBrowserText
setUndoEnabled(boolean) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
setUndoEnabled(boolean) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreManager
setUndoEnabled(boolean) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
setUndoOption(boolean) - Method in class edu.stanford.smi.protege.model.Project
setup(Component, Object, boolean, boolean) - Method in class edu.stanford.smi.protege.util.DefaultRenderer
setup(WidgetDescriptor, boolean, Project, Cls) - Method in class edu.stanford.smi.protege.widget.AbstractClsWidget
setup(WidgetDescriptor, boolean, Project, Cls, Slot) - Method in class edu.stanford.smi.protege.widget.AbstractSlotWidget
setup(WidgetDescriptor, Project) - Method in class edu.stanford.smi.protege.widget.AbstractTabWidget
setup(WidgetDescriptor, boolean, Project) - Method in class edu.stanford.smi.protege.widget.AbstractWidget
setup(WidgetDescriptor, boolean, Project, Cls) - Method in interface edu.stanford.smi.protege.widget.ClsWidget
setup(WidgetDescriptor, boolean, Project, Cls, Slot) - Method in interface edu.stanford.smi.protege.widget.SlotWidget
setup(WidgetDescriptor, Project) - Method in interface edu.stanford.smi.protege.widget.TabWidget
setUpdateModificationSlots(boolean) - Method in class edu.stanford.smi.protege.model.Project
setupDragAndDrop() - Method in class edu.stanford.smi.protege.ui.SubclassPane
setUpPlasticLF() - Static method in class edu.stanford.smi.protege.util.LookAndFeelUtil
setURI(URI) - Method in class edu.stanford.smi.protege.util.URIField
setURL(String) - Method in class edu.stanford.smi.protege.storage.database.DatabaseCreateProjectPlugin
setURL(PropertyList, String) - Static method in class edu.stanford.smi.protege.storage.database.DatabaseKnowledgeBaseFactory
setURL(String) - Method in interface edu.stanford.smi.protege.storage.database.DatabasePlugin
setUrlConnectReadTimeout(int) - Static method in class edu.stanford.smi.protege.util.ApplicationProperties
  Sets the connect read timeout.
setUrlConnectTimeout(int) - Static method in class edu.stanford.smi.protege.util.ApplicationProperties
  Sets the connect timeout.
setUseExistingSources(boolean) - Method in class edu.stanford.smi.protege.plugin.AbstractCreateProjectPlugin
setUseExistingSources(boolean) - Method in interface edu.stanford.smi.protege.plugin.CreateProjectPlugin
setUserInfo(Map<RemoteSession, Boolean>, FrameCalculatorStats) - Method in class edu.stanford.smi.protege.server.admin.UserInfoTableModel
setUserName(String) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
setUsername(String) - Method in class edu.stanford.smi.protege.storage.database.DatabaseCreateProjectPlugin
setUsername(PropertyList, String) - Static method in class edu.stanford.smi.protege.storage.database.DatabaseKnowledgeBaseFactory
setUsername(String) - Method in interface edu.stanford.smi.protege.storage.database.DatabasePlugin
setUserName(String) - Static method in class edu.stanford.smi.protege.util.ApplicationProperties
setValue(Frame, Slot, Facet, boolean, Object) - Method in interface edu.stanford.smi.protege.model.Storage
setValue(PreparedStatement, int, int, int, Object, int, FrameFactory) - Static method in class edu.stanford.smi.protege.storage.database.DatabaseUtils
setValue(int) - Method in class edu.stanford.smi.protege.util.IntegerField
setValue(int, Object) - Method in class edu.stanford.smi.protege.util.SimpleListModel
setValueAt(Object, int, int) - Method in class edu.stanford.smi.protege.widget.PropertiesTableModel
setValueChecking(boolean) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
  Deprecated. Use #setFacetCheckingEnabled(boolean)
setValueChecking(boolean) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
  Checks every call that changes an own slot value that the new value is consistent with all facets.
setValueIndex(PreparedStatement, int, int) - Static method in class edu.stanford.smi.protege.storage.database.DatabaseUtils
setValues(Slot, Collection) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
setValues(Collection) - Method in class edu.stanford.smi.protege.model.DefaultSlot
setValues(Frame, Slot, Facet, boolean, Collection) - Method in class edu.stanford.smi.protege.model.framestore.ClosureCachingBasicFrameStore
setValues(Frame, Slot, Facet, boolean, Collection) - Method in class edu.stanford.smi.protege.model.framestore.ImmutableNamesNarrowFrameStore
setValues(Frame, Slot, Facet, boolean, Collection) - Method in class edu.stanford.smi.protege.model.framestore.InMemoryFrameDb
setValues(Frame, Slot, Facet, boolean, Collection) - Method in class edu.stanford.smi.protege.model.framestore.MergingNarrowFrameStore
setValues(Frame, Slot, Facet, boolean, Collection) - Method in interface edu.stanford.smi.protege.model.framestore.NarrowFrameStore
setValues(Frame, Slot, Facet, boolean, Collection) - Method in class edu.stanford.smi.protege.model.framestore.PlaceHolderNarrowFrameStore
setValues(Collection) - Method in class edu.stanford.smi.protege.model.framestore.Record
setValues(Slot, Collection) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
setValues(Collection) - Method in interface edu.stanford.smi.protege.model.Slot
setValues(Frame, Slot, Facet, boolean, Collection) - Method in interface edu.stanford.smi.protege.model.Storage
setValues(Frame, Slot, Facet, boolean, Collection, RemoteSession) - Method in interface edu.stanford.smi.protege.server.narrowframestore.RemoteServerNarrowFrameStore
setValues(Frame, Slot, Facet, boolean, Collection, RemoteSession) - Method in class edu.stanford.smi.protege.server.narrowframestore.ServerNarrowFrameStore
setValues(Frame, Slot, Facet, boolean, Collection) - Method in class edu.stanford.smi.protege.storage.database.DefaultDatabaseFrameDb
setValues(Frame, Slot, Facet, boolean, Collection) - Method in class edu.stanford.smi.protege.storage.database.IdleConnectionNarrowFrameStore
setValues(Frame, Slot, Facet, boolean, Collection) - Method in class edu.stanford.smi.protege.storage.database.ValueCachingNarrowFrameStore
setValues(Collection) - Method in class edu.stanford.smi.protege.util.SimpleListModel
setValues(Collection) - Method in class edu.stanford.smi.protege.widget.AbstractListWidget
setValues(Collection) - Method in class edu.stanford.smi.protege.widget.AbstractSlotWidget
setValues(Collection) - Method in class edu.stanford.smi.protege.widget.CheckBoxWidget
setValues(Collection) - Method in class edu.stanford.smi.protege.widget.ClsFieldWidget
setValues(Collection) - Method in class edu.stanford.smi.protege.widget.ClsListWidget
setValues(Collection) - Method in class edu.stanford.smi.protege.widget.ComboBoxWidget
setValues(Collection) - Method in class edu.stanford.smi.protege.widget.DirectDomainWidget
setValues(Collection) - Method in class edu.stanford.smi.protege.widget.InstanceFieldWidget
setValues(Collection) - Method in class edu.stanford.smi.protege.widget.InstanceListWidget
setValues(Collection) - Method in class edu.stanford.smi.protege.widget.InstanceValuesComponent
setValues(Collection) - Method in class edu.stanford.smi.protege.widget.InverseSlotWidget
setValues(Collection) - Method in class edu.stanford.smi.protege.widget.MaximumCardinalityWidget
setValues(Collection) - Method in class edu.stanford.smi.protege.widget.MinimumCardinalityWidget
setValues(Collection) - Method in class edu.stanford.smi.protege.widget.SlotValuesWidget
setValues(Collection) - Method in class edu.stanford.smi.protege.widget.TextComponentWidget
setValues(Collection) - Method in interface edu.stanford.smi.protege.widget.ValuesComponent
setValues(Collection) - Method in class edu.stanford.smi.protege.widget.ValueTypeWidget
setValues(Collection) - Method in class edu.stanford.smi.protege.widget.YellowStickyWidget
setValueType(Slot, ValueType) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
setValueType(ValueType) - Method in class edu.stanford.smi.protege.model.DefaultSlot
setValueType(Slot, ValueType) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
setValueType(ValueType) - Method in interface edu.stanford.smi.protege.model.Slot
setValueType(PreparedStatement, int, Object, FrameFactory) - Static method in class edu.stanford.smi.protege.storage.database.DatabaseUtils
setValueType(PreparedStatement, int, int) - Static method in class edu.stanford.smi.protege.storage.database.DatabaseUtils
setVersionString(String) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
setVersionString(String) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
setVerticallyStretchable(boolean) - Method in class edu.stanford.smi.protege.util.LabeledComponent
setVerticalStretcher(String) - Method in class edu.stanford.smi.protege.widget.FormWidget
setVisible(boolean) - Method in class edu.stanford.smi.protege.model.DefaultFrame
setVisible(boolean) - Method in interface edu.stanford.smi.protege.model.Frame
setVisible(boolean) - Method in class edu.stanford.smi.protege.model.WidgetDescriptor
setVisibleHeaderButton(AllowableAction, boolean) - Method in class edu.stanford.smi.protege.widget.ProtegePropertiesComponent
setWelcomeDialogShow(boolean) - Static method in class edu.stanford.smi.protege.util.ApplicationProperties
setWidget(Widget) - Method in class edu.stanford.smi.protege.util.ProjectViewEvent
setWidgetClassName(String) - Method in class edu.stanford.smi.protege.model.WidgetDescriptor
setWidgetCls(Cls) - Method in class edu.stanford.smi.protege.ui.FormDisplay
setWidgetDescriptor(WidgetDescriptor) - Method in class edu.stanford.smi.protege.util.PropertyList
setWidgetMapper(WidgetMapper) - Method in class edu.stanford.smi.protege.model.Project
setWidgetValues() - Method in class edu.stanford.smi.protege.widget.AbstractSlotWidget
setWidgetValues() - Method in class edu.stanford.smi.protege.widget.FormWidget
setWidgetValues() - Method in class edu.stanford.smi.protege.widget.InstanceNameWidget
setWriteEncodingOverride(String) - Static method in class edu.stanford.smi.protege.util.FileUtilities
Sft - Class in edu.stanford.smi.protege.model.framestore
Sft(Slot, Facet, boolean) - Constructor for class edu.stanford.smi.protege.model.framestore.Sft
Sft() - Constructor for class edu.stanford.smi.protege.model.framestore.Sft
shallowCopy(KnowledgeBase, Map) - Method in class edu.stanford.smi.protege.model.DefaultInstance
shallowCopy(KnowledgeBase, Map) - Method in interface edu.stanford.smi.protege.model.Frame
SHARED - Static variable in interface edu.stanford.smi.protege.storage.clips.ParserConstants
  RegularExpression Id.
shouldDisplaySlot(Cls, Slot) - Method in class edu.stanford.smi.protege.ui.InstanceDisplay
show(Cls, Slot) - Method in class edu.stanford.smi.protege.model.Project
show(Instance) - Method in class edu.stanford.smi.protege.model.Project
show(String) - Method in class edu.stanford.smi.protege.model.Project
show(Instance) - Method in interface edu.stanford.smi.protege.util.ShowInstanceListener
show() - Method in class edu.stanford.smi.protege.util.WaitCursor
show(Cls, Slot) - Method in class edu.stanford.smi.protege.widget.AbstractWidget
ShowAboutBox - Class in edu.stanford.smi.protege.action
  Display the "About Box" for the application.
ShowAboutBox() - Constructor for class edu.stanford.smi.protege.action.ShowAboutBox
ShowAboutPluginsBox - Class in edu.stanford.smi.protege.action
  Display the "About Box" for the application.
ShowAboutPluginsBox() - Constructor for class edu.stanford.smi.protege.action.ShowAboutPluginsBox
showAlphaFeatures() - Static method in class edu.stanford.smi.protege.util.SystemUtilities
ShowCommandHistoryAction - Class in edu.stanford.smi.protege.action
  Show a panel displaying the previously executed commands.
ShowCommandHistoryAction() - Constructor for class edu.stanford.smi.protege.action.ShowCommandHistoryAction
showDialog(Component, Component, String, int) - Static method in class edu.stanford.smi.protege.util.ModalDialog
showDialog(Component, Component, String, int, ModalDialog.CloseCallback) - Static method in class edu.stanford.smi.protege.util.ModalDialog
showDialog(Component, Component, String, int, ModalDialog.CloseCallback, boolean) - Static method in class edu.stanford.smi.protege.util.ModalDialog
ShowEncodingAndLocales - Class in edu.stanford.smi.protege.action
  Display the "Encodings and Locales" dialog for the application.
ShowEncodingAndLocales() - Constructor for class edu.stanford.smi.protege.action.ShowEncodingAndLocales
showHTML(String) - Static method in class edu.stanford.smi.protege.util.SystemUtilities
ShowIconDialog - Class in edu.stanford.smi.protege.action
  Display a dialog that shows all of the icons used by the application along with a description of what they mean.
ShowIconDialog() - Constructor for class edu.stanford.smi.protege.action.ShowIconDialog
ShowIncludedProjects - Class in edu.stanford.smi.protege.action
  Action to show all of the included projects for the application (including the nested includes)
ShowIncludedProjects() - Constructor for class edu.stanford.smi.protege.action.ShowIncludedProjects
showInFrame(Component, String) - Static method in class edu.stanford.smi.protege.util.ComponentFactory
showInInternalFrame(Instance) - Method in class edu.stanford.smi.protege.model.Project
showInstance(Instance) - Method in class edu.stanford.smi.protege.ui.ClsesPanel
showInstance(Instance) - Method in class edu.stanford.smi.protege.widget.AbstractSlotWidget
showInstance(Instance) - Method in class edu.stanford.smi.protege.widget.AbstractWidget
ShowInstanceListener - Interface in edu.stanford.smi.protege.util
showMessageDialog(Component, String) - Static method in class edu.stanford.smi.protege.util.ModalDialog
showMessageDialog(Component, String, String) - Static method in class edu.stanford.smi.protege.util.ModalDialog
showMessageDialog(Component, String, int) - Static method in class edu.stanford.smi.protege.util.ModalDialog
showMessageDialog(Component, String, String, int) - Static method in class edu.stanford.smi.protege.util.ModalDialog
showMessageInFrame(String, String) - Static method in class edu.stanford.smi.protege.util.ComponentFactory
ShowMetrics - Class in edu.stanford.smi.protege.action
  Show a panel to display interesting metrics about the current Project
ShowMetrics() - Constructor for class edu.stanford.smi.protege.action.ShowMetrics
showNextPage() - Method in class edu.stanford.smi.protege.util.Wizard
showOpenDialog(Component) - Method in class edu.stanford.smi.protege.util.ProjectChooser
showPreviousPage() - Method in class edu.stanford.smi.protege.util.Wizard
showServerAdminWindow(RemoteServer, RemoteSession) - Method in class edu.stanford.smi.protege.server.RemoteProjectManager
showTableRowInDialog(TableModel, int, Component) - Static method in class edu.stanford.smi.protege.util.ComponentFactory
shutdown() - Static method in class edu.stanford.smi.protege.Application
shutdown() - Method in interface edu.stanford.smi.protege.server.RemoteServer
shutdown(String, RemoteSession) - Method in interface edu.stanford.smi.protege.server.RemoteServer
shutdown() - Method in class edu.stanford.smi.protege.server.Server
shutdown(String, RemoteSession) - Method in class edu.stanford.smi.protege.server.Server
Shutdown - Class in edu.stanford.smi.protege.server
  TODO Class Comment
Shutdown() - Constructor for class edu.stanford.smi.protege.server.Shutdown
shutdownProject(RemoteSession, String, Integer[], int) - Method in interface edu.stanford.smi.protege.server.RemoteServer
  Shuts down the remote project with the name projectName and sends shutdown notifications at time periods (in seconds) from the warningTimesInSeconds argument.
shutdownProject(RemoteSession, String, float) - Method in interface edu.stanford.smi.protege.server.RemoteServer
  Shuts down the remote project with the name projectName and sends shutdown notifications at certain time periods: it starts with the warningTimeInSeconds argument and divides it by two.
shutdownProject(RemoteSession, String, float) - Method in class edu.stanford.smi.protege.server.Server
  Shuts down the remote project with the name projectName and sends shutdown notifications at certain time periods: it starts with the warningTimeInSeconds argument and divides it by two.
shutdownProject(RemoteSession, String, Integer[], int) - Method in class edu.stanford.smi.protege.server.Server
  Shuts down the remote project with the name projectName and sends shutdown notifications at time periods (in seconds) from the warningTimesInSeconds argument.
SIMPLE_INSTANCE - Static variable in interface edu.stanford.smi.protege.storage.xml.XMLString.ElementName
SIMPLE_INSTANCE_TYPE - Static variable in interface edu.stanford.smi.protege.storage.xml.XMLString.AttributeValue
SimpleCharStream - Class in edu.stanford.smi.protege.storage.clips
  An implementation of interface CharStream, where the stream is assumed to contain only ASCII characters (without unicode processing).
SimpleCharStream(Reader, int, int, int) - Constructor for class edu.stanford.smi.protege.storage.clips.SimpleCharStream
  Constructor.
SimpleCharStream(Reader, int, int) - Constructor for class edu.stanford.smi.protege.storage.clips.SimpleCharStream
  Constructor.
SimpleCharStream(Reader) - Constructor for class edu.stanford.smi.protege.storage.clips.SimpleCharStream
  Constructor.
SimpleCharStream(InputStream, String, int, int, int) - Constructor for class edu.stanford.smi.protege.storage.clips.SimpleCharStream
  Constructor.
SimpleCharStream(InputStream, int, int, int) - Constructor for class edu.stanford.smi.protege.storage.clips.SimpleCharStream
  Constructor.
SimpleCharStream(InputStream, String, int, int) - Constructor for class edu.stanford.smi.protege.storage.clips.SimpleCharStream
  Constructor.
SimpleCharStream(InputStream, int, int) - Constructor for class edu.stanford.smi.protege.storage.clips.SimpleCharStream
  Constructor.
SimpleCharStream(InputStream, String) - Constructor for class edu.stanford.smi.protege.storage.clips.SimpleCharStream
  Constructor.
SimpleCharStream(InputStream) - Constructor for class edu.stanford.smi.protege.storage.clips.SimpleCharStream
  Constructor.
SimpleFrameStore - Class in edu.stanford.smi.protege.model.framestore
SimpleFrameStore(KnowledgeBase, NarrowFrameStore) - Constructor for class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
SimpleInstance - Interface in edu.stanford.smi.protege.model
  A "Simple Instance" is an instance which is not a class, a slot, or a facet.
SimpleListModel - Class in edu.stanford.smi.protege.util
  A list model where elements are stored in a `List`.
SimpleListModel() - Constructor for class edu.stanford.smi.protege.util.SimpleListModel
SimpleListModel(Collection) - Constructor for class edu.stanford.smi.protege.util.SimpleListModel
SimpleStream - Class in edu.stanford.smi.protege.server
SimpleStream(URL) - Constructor for class edu.stanford.smi.protege.server.SimpleStream
SimpleStringMatcher - Class in edu.stanford.smi.protege.util
  A string matcher implementation.
SimpleStringMatcher(String) - Constructor for class edu.stanford.smi.protege.util.SimpleStringMatcher
SimulateDelayAspect - Class in edu.stanford.smi.protege.server.socket
SimulateDelayAspect(SocketAspect) - Constructor for class edu.stanford.smi.protege.server.socket.SimulateDelayAspect
SimulateDelayInputStream - Class in edu.stanford.smi.protege.server.socket
SimulateDelayInputStream(InputStream) - Constructor for class edu.stanford.smi.protege.server.socket.SimulateDelayInputStream
SimulateDelayOutputStream - Class in edu.stanford.smi.protege.server.socket
SimulateDelayOutputStream(OutputStream) - Constructor for class edu.stanford.smi.protege.server.socket.SimulateDelayOutputStream
SINGLE_SLOT - Static variable in interface edu.stanford.smi.protege.storage.clips.ParserConstants
  RegularExpression Id.
size() - Method in class edu.stanford.smi.protege.util.HashList
  Deprecated. Returns the number of elements in this list.
skip(long) - Method in class edu.stanford.smi.protege.server.socket.MonitoringInputStream
skip(long) - Method in class edu.stanford.smi.protege.server.socket.SimulateDelayInputStream
SKIP_PRELOAD - Static variable in class edu.stanford.smi.protege.server.ServerProperties
skipDirectInstances() - Method in class edu.stanford.smi.protege.server.framestore.background.WorkInfo
skipPreload() - Static method in class edu.stanford.smi.protege.server.ServerProperties
sleepMsec(int) - Static method in class edu.stanford.smi.protege.util.SystemUtilities
SLOT - Static variable in interface edu.stanford.smi.protege.model.Model.Cls
SLOT - Static variable in interface edu.stanford.smi.protege.model.Model.ClsID
Slot - Interface in edu.stanford.smi.protege.model
  A top level slot object.
slot(Cls) - Method in class edu.stanford.smi.protege.storage.clips.Parser
SLOT - Static variable in interface edu.stanford.smi.protege.storage.clips.ParserConstants
  RegularExpression Id.
SLOT - Static variable in interface edu.stanford.smi.protege.storage.xml.XMLString.ElementName
slot - Variable in class edu.stanford.smi.protege.util.GetOwnSlotValuesBrowserTextJob
SLOT_ADD - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
SLOT_ADD_SUPERSLOT - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
SLOT_BOOLEAN_VALUE - Static variable in class edu.stanford.smi.protege.util.PropertyList
SLOT_BROWSER_HIERARCHY_LABEL - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
SLOT_BROWSER_SUPERSLOTS_LABEL - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
SLOT_BROWSER_TITLE - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
SLOT_COPY - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
SLOT_CREATE - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
SLOT_CREATE_SUBSLOT - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
SLOT_CREATED - Static variable in class edu.stanford.smi.protege.event.KnowledgeBaseEvent
SLOT_DELETE - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
SLOT_DELETED - Static variable in class edu.stanford.smi.protege.event.KnowledgeBaseEvent
SLOT_EDITOR_FOR_SLOT_LABEL - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
SLOT_EDITOR_TITLE - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
SLOT_INTEGER_VALUE - Static variable in class edu.stanford.smi.protege.util.PropertyList
SLOT_MOVE_DOWN - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
SLOT_MOVE_UP - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
SLOT_NAME - Static variable in class edu.stanford.smi.protege.util.PropertyList
SLOT_NOTE - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
SLOT_NOTE_CREATE - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
SLOT_NOTE_DELETE - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
SLOT_NOTE_HIDE - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
SLOT_PROPERTIES - Static variable in class edu.stanford.smi.protege.util.PropertyList
SLOT_PROPERTY_MAP - Static variable in class edu.stanford.smi.protege.model.Project
SLOT_REFERENCE - Static variable in interface edu.stanford.smi.protege.storage.xml.XMLString.ElementName
SLOT_REMOVE - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
SLOT_REMOVE_FACET_OVERRIDES - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
SLOT_REMOVE_SUPERSLOT - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
SLOT_SEARCH_FOR - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
SLOT_STRING_VALUE - Static variable in class edu.stanford.smi.protege.util.PropertyList
SLOT_TYPE - Static variable in interface edu.stanford.smi.protege.storage.xml.XMLString.AttributeValue
SLOT_VALUES_DELIMITER_PROPERTY - Static variable in class edu.stanford.smi.protege.action.ExportToCsvUtil
SLOT_VIEW - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
SLOT_VIEW_FACET_OVERRIDES - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
SLOT_VIEW_REFERENCES - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
SLOT_VIEW_TOP_LEVEL - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
SlotAdapter - Class in edu.stanford.smi.protege.event
  Adapter for the SlotListener interface.
SlotAdapter() - Constructor for class edu.stanford.smi.protege.event.SlotAdapter
SlotAtClassCode - Class in edu.stanford.smi.protege.code.generator.wrapping
SlotAtClassCode(Cls, Slot) - Constructor for class edu.stanford.smi.protege.code.generator.wrapping.SlotAtClassCode
slotCardinality() - Method in class edu.stanford.smi.protege.storage.clips.Parser
SlotClsesPanel - Class in edu.stanford.smi.protege.ui
  Panel to display all of the classes that a given slot is directly attached to.
SlotClsesPanel(Project) - Constructor for class edu.stanford.smi.protege.ui.SlotClsesPanel
SlotCode - Class in edu.stanford.smi.protege.code.generator.wrapping
  An object representing metadata about a property useful for Java code generation.
SlotCode(Slot, boolean) - Constructor for class edu.stanford.smi.protege.code.generator.wrapping.SlotCode
slotCreated(KnowledgeBaseEvent) - Method in class edu.stanford.smi.protege.event.KnowledgeBaseAdapter
slotCreated(KnowledgeBaseEvent) - Method in interface edu.stanford.smi.protege.event.KnowledgeBaseListener
slotDeleted(KnowledgeBaseEvent) - Method in class edu.stanford.smi.protege.event.KnowledgeBaseAdapter
slotDeleted(KnowledgeBaseEvent) - Method in interface edu.stanford.smi.protege.event.KnowledgeBaseListener
slotDocumentationFacet(Cls, Slot) - Method in class edu.stanford.smi.protege.storage.clips.Parser
SlotEvent - Class in edu.stanford.smi.protege.event
  Event generated when a slot changes.
SlotEvent(Slot, int, Frame) - Constructor for class edu.stanford.smi.protege.event.SlotEvent
SlotEventDispatcher - Class in edu.stanford.smi.protege.event
  Dispatcher to send slot events to their listeners.
SlotEventDispatcher() - Constructor for class edu.stanford.smi.protege.event.SlotEventDispatcher
SlotHierarchyRenderer - Class in edu.stanford.smi.protege.ui
SlotHierarchyRenderer() - Constructor for class edu.stanford.smi.protege.ui.SlotHierarchyRenderer
SlotListener - Interface in edu.stanford.smi.protege.event
  Listener interface for slot events.
slotName() - Method in class edu.stanford.smi.protege.storage.clips.Parser
SlotPairRenderer - Class in edu.stanford.smi.protege.ui
  Renderer for displaying a slot at a class.
SlotPairRenderer() - Constructor for class edu.stanford.smi.protege.ui.SlotPairRenderer
SLOTS_DELIMITER_PROPERTY - Static variable in class edu.stanford.smi.protege.action.ExportToCsvUtil
SLOTS_VIEW_TITLE - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
SlotsTab - Class in edu.stanford.smi.protege.widget
  The standard slot tab.
SlotsTab() - Constructor for class edu.stanford.smi.protege.widget.SlotsTab
SlotsTreeDragSourceListener - Class in edu.stanford.smi.protege.ui
  Source listener drag and drop support for the ClsesTree.
SlotsTreeDragSourceListener() - Constructor for class edu.stanford.smi.protege.ui.SlotsTreeDragSourceListener
SlotsTreeFinder - Class in edu.stanford.smi.protege.ui
SlotsTreeFinder(KnowledgeBase, JTree) - Constructor for class edu.stanford.smi.protege.ui.SlotsTreeFinder
SlotsTreeFinder(KnowledgeBase, JTree, String) - Constructor for class edu.stanford.smi.protege.ui.SlotsTreeFinder
SlotsTreeTarget - Class in edu.stanford.smi.protege.ui
  Target support for Slots tree drag and drop support.
SlotsTreeTarget() - Constructor for class edu.stanford.smi.protege.ui.SlotsTreeTarget
SlotSubslotNode - Class in edu.stanford.smi.protege.ui
  Tree node for modeling the superslot-subslot relationship.
SlotSubslotNode(LazyTreeNode, Slot) - Constructor for class edu.stanford.smi.protege.ui.SlotSubslotNode
SlotSubslotRoot - Class in edu.stanford.smi.protege.ui
  Tree root for the superslot-subslot relationship tree nodes.
SlotSubslotRoot(KnowledgeBase) - Constructor for class edu.stanford.smi.protege.ui.SlotSubslotRoot
SlotSubslotRoot(KnowledgeBase, Collection) - Constructor for class edu.stanford.smi.protege.ui.SlotSubslotRoot
SlotSubslotRoot(KnowledgeBase, Collection, boolean) - Constructor for class edu.stanford.smi.protege.ui.SlotSubslotRoot
slotValue(Instance, Collection) - Method in class edu.stanford.smi.protege.storage.clips.Parser
slotValueFieldProperty() - Method in class edu.stanford.smi.protege.storage.clips.Parser
slotValueFields(Instance, Slot, ValueType) - Method in class edu.stanford.smi.protege.storage.clips.Parser
SlotValuesWidget - Class in edu.stanford.smi.protege.widget
  A slot widget that is capable of acquiring a value of any type.
SlotValuesWidget() - Constructor for class edu.stanford.smi.protege.widget.SlotValuesWidget
SlotWidget - Interface in edu.stanford.smi.protege.widget
  Fundamental interface for all slot widgets.
SlotWidgetComparer - Class in edu.stanford.smi.protege.widget
  A comparer for slot widgets.
SlotWidgetComparer() - Constructor for class edu.stanford.smi.protege.widget.SlotWidgetComparer
SLOW_QUERY_PROPERTY - Static variable in class edu.stanford.smi.protege.storage.database.AbstractDatabaseFrameDb
SocketAspect - Interface in edu.stanford.smi.protege.server.socket
SocketWithAspects - Class in edu.stanford.smi.protege.server.socket
SocketWithAspects(boolean) - Constructor for class edu.stanford.smi.protege.server.socket.SocketWithAspects
SOME_VALUES - Static variable in interface edu.stanford.smi.protege.model.Model.Facet
SOME_VALUES - Static variable in interface edu.stanford.smi.protege.model.Model.FacetID
SOME_VALUES - Static variable in interface edu.stanford.smi.protege.model.Model.Slot
SOME_VALUES - Static variable in interface edu.stanford.smi.protege.model.Model.SlotID
SORT_CLASS_TREE - Static variable in class edu.stanford.smi.protege.util.ApplicationProperties
SORT_LIMIT - Static variable in class edu.stanford.smi.protege.ui.DirectInstancesList
SORT_LIMIT_PROPERTY - Static variable in class edu.stanford.smi.protege.ui.DirectInstancesList
SORT_SLOTS_TREE - Static variable in class edu.stanford.smi.protege.util.ApplicationProperties
SOURCE - Static variable in interface edu.stanford.smi.protege.storage.clips.ParserConstants
  RegularExpression Id.
sourceFacet(Cls, Slot) - Method in class edu.stanford.smi.protege.storage.clips.Parser
specialConstructor - Variable in exception edu.stanford.smi.protege.storage.clips.ParseException
  This variable determines which constructor was used to create this object and thereby affects the semantics of the "getMessage" method (see below).
specialToken - Variable in class edu.stanford.smi.protege.storage.clips.Token
  This field is used to access special tokens that occur prior to this token, but after the immediately preceding regular (non-special) token.
SplashScreen - Class in edu.stanford.smi.protege.ui
  A window for the application startup splash screen.
SplashScreen() - Constructor for class edu.stanford.smi.protege.ui.SplashScreen
SpringUtilities - Class in edu.stanford.smi.protege.ui
  A 1.4 file that provides utility methods for creating form- or grid-style layouts with SpringLayout.
SpringUtilities() - Constructor for class edu.stanford.smi.protege.ui.SpringUtilities
SSL_KEYSTORE - Static variable in class edu.stanford.smi.protege.server.socket.SSLFactory
SSL_PASSWORD - Static variable in class edu.stanford.smi.protege.server.socket.SSLFactory
SSL_POLICY - Static variable in class edu.stanford.smi.protege.server.socket.SSLFactory
SSL_PROTOCOL - Static variable in class edu.stanford.smi.protege.server.socket.SSLFactory
SSLFactory - Class in edu.stanford.smi.protege.server.socket
SSLFactory() - Constructor for class edu.stanford.smi.protege.server.socket.SSLFactory
SSLFactory.Context - Enum in edu.stanford.smi.protege.server.socket
stack(String, Object, String, Object[]) - Method in class edu.stanford.smi.protege.util.DefaultLogger
stack(String, Object, String, Object[]) - Method in class edu.stanford.smi.protege.util.LegacyLoggerImpl
stack(String, Object, String) - Static method in class edu.stanford.smi.protege.util.Log
  Deprecated. Use getLogger().info();
stack(String, Object, String, Object) - Static method in class edu.stanford.smi.protege.util.Log
  Deprecated. Use getLogger().info();
stack(String, Object, String, Object, Object) - Static method in class edu.stanford.smi.protege.util.Log
  Deprecated. Use getLogger().info();
stack(String, Object, String, Object, Object, Object) - Static method in class edu.stanford.smi.protege.util.Log
  Deprecated. Use getLogger().info();
stack(String, Object, String, Object, Object, Object, Object) - Static method in class edu.stanford.smi.protege.util.Log
  Deprecated. Use getLogger().info();
STANDARD_BUTTON_HEIGHT - Static variable in class edu.stanford.smi.protege.util.ComponentFactory
STANDARD_BUTTON_SIZE - Static variable in class edu.stanford.smi.protege.util.ComponentFactory
STANDARD_CLASS - Static variable in interface edu.stanford.smi.protege.model.Model.Cls
STANDARD_CLASS - Static variable in interface edu.stanford.smi.protege.model.Model.ClsID
STANDARD_FACET - Static variable in interface edu.stanford.smi.protege.model.Model.Cls
STANDARD_FACET - Static variable in interface edu.stanford.smi.protege.model.Model.ClsID
STANDARD_FIELD_HEIGHT - Static variable in class edu.stanford.smi.protege.util.ComponentFactory
STANDARD_SLOT - Static variable in interface edu.stanford.smi.protege.model.Model.Cls
STANDARD_SLOT - Static variable in interface edu.stanford.smi.protege.model.Model.ClsID
StandardAction - Class in edu.stanford.smi.protege.util
  TODO Class Comment
StandardAction(String) - Constructor for class edu.stanford.smi.protege.util.StandardAction
StandardAction(String, Icon) - Constructor for class edu.stanford.smi.protege.util.StandardAction
StandardAction(ResourceKey) - Constructor for class edu.stanford.smi.protege.util.StandardAction
StandardAction(ResourceKey, boolean) - Constructor for class edu.stanford.smi.protege.util.StandardAction
StandardDateFormat - Class in edu.stanford.smi.protege.util
  The formatter defines the standard way that dates/times are "stringified" for storage in Protege.
StandardDateFormat() - Constructor for class edu.stanford.smi.protege.util.StandardDateFormat
start(URI) - Method in class edu.stanford.smi.protege.model.framestore.JournalingFrameStoreHandler
startCompleteCache() - Method in class edu.stanford.smi.protege.server.update.DeferredOperationCache
startCompleteCache() - Method in interface edu.stanford.smi.protege.util.transaction.cache.Cache
  The startCompleteCache and the finishCompleteCache are part of a protocol.
startCompleteCache() - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.BasicCache
startCompleteCache() - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.CompleteableCache
startCompleteCache() - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.InvalidatableCache
startCompleteCache() - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.ReadCommittedCache
startCompleteCache() - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.ReadUncommittedCache
startCompleteCache() - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.RepeatableReadCache
startElement(String, String, String, Attributes) - Method in class edu.stanford.smi.protege.storage.xml.XMLHandler
startJournaling(URI) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
startJournaling(URI) - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreManager
startJournaling(URI) - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
startServer(String[]) - Static method in class edu.stanford.smi.protege.server.Server
  Start up the server.
staticFlag - Static variable in class edu.stanford.smi.protege.storage.clips.SimpleCharStream
  Whether parser is static.
StatusBar - Class in edu.stanford.smi.protege.ui
StatusBar() - Constructor for class edu.stanford.smi.protege.ui.StatusBar
stop() - Method in class edu.stanford.smi.protege.model.framestore.JournalingFrameStoreHandler
stopCellEditing() - Method in class edu.stanford.smi.protege.widget.ProtegePropertiesComponent
stopJournaling() - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
stopJournaling() - Method in class edu.stanford.smi.protege.model.framestore.FrameStoreManager
stopJournaling() - Method in interface edu.stanford.smi.protege.model.KnowledgeBase
stopSending() - Method in class edu.stanford.smi.protege.server.framestore.BandWidthPolicy
Storage - Interface in edu.stanford.smi.protege.model
  Low-level holder of frames.
STORAGE - Static variable in interface edu.stanford.smi.protege.storage.clips.ParserConstants
  RegularExpression Id.
storageFacet(Cls, Slot) - Method in class edu.stanford.smi.protege.storage.clips.Parser
store(Map, Instance) - Static method in class edu.stanford.smi.protege.model.PropertyMapUtil
store() - Method in class edu.stanford.smi.protege.storage.xml.XMLStorer
storeClses(KnowledgeBase, Collection) - Method in class edu.stanford.smi.protege.storage.clips.ClsStorer
storeInstances(KnowledgeBase, Collection) - Method in class edu.stanford.smi.protege.storage.clips.InstanceStorer
STRETCH_ALL - Static variable in class edu.stanford.smi.protege.widget.FormWidget
STRETCH_NONE - Static variable in class edu.stanford.smi.protege.widget.FormWidget
STRING - Static variable in interface edu.stanford.smi.protege.model.Model.Cls
STRING - Static variable in interface edu.stanford.smi.protege.model.Model.ClsID
STRING - Static variable in class edu.stanford.smi.protege.model.ValueType
string() - Method in class edu.stanford.smi.protege.storage.clips.Parser
STRING - Static variable in interface edu.stanford.smi.protege.storage.clips.ParserConstants
  RegularExpression Id.
STRING_LITERAL - Static variable in interface edu.stanford.smi.protege.storage.clips.ParserConstants
  RegularExpression Id.
STRING_TYPE - Static variable in interface edu.stanford.smi.protege.storage.xml.XMLString.AttributeValue
stringEquals(String, String) - Method in class edu.stanford.smi.protege.storage.database.pool.DatabaseParam
StringListWidget - Class in edu.stanford.smi.protege.widget
  Slot widget for acquiring a list of strings.
StringListWidget() - Constructor for class edu.stanford.smi.protege.widget.StringListWidget
StringMatcher - Interface in edu.stanford.smi.protege.util
  An interface that can be used to query whether a particular value is a match for another string.
StringUtilities - Class in edu.stanford.smi.protege.util
  Some utilities for working with Strings.
StringUtilities() - Constructor for class edu.stanford.smi.protege.util.StringUtilities
stripHtmlTags(String) - Static method in class edu.stanford.smi.protege.util.StringUtilities
SUBCLASSES_SLOT_WIDGET_LABEL - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
SubclassPane - Class in edu.stanford.smi.protege.ui
  This component displays the superclass/subclass tree on the classes tab.
SubclassPane(Action, Cls, Action, Action) - Constructor for class edu.stanford.smi.protege.ui.SubclassPane
SubclassWidget - Class in edu.stanford.smi.protege.widget
  Slot Widget for displaying the subclasses of a given class.
SubclassWidget() - Constructor for class edu.stanford.smi.protege.widget.SubclassWidget
SUBSET_OF_VALUES - Static variable in interface edu.stanford.smi.protege.model.Model.Facet
SUBSET_OF_VALUES - Static variable in interface edu.stanford.smi.protege.model.Model.FacetID
SUBSET_OF_VALUES - Static variable in interface edu.stanford.smi.protege.model.Model.Slot
SUBSET_OF_VALUES - Static variable in interface edu.stanford.smi.protege.model.Model.SlotID
SUBSLOT_OF - Static variable in interface edu.stanford.smi.protege.storage.clips.ParserConstants
  RegularExpression Id.
SubslotPane - Class in edu.stanford.smi.protege.ui
  This component displays the superslot/subslot tree on the slots tab.
SubslotPane(Project) - Constructor for class edu.stanford.smi.protege.ui.SubslotPane
SUBSLOTS_SLOT_WIDGET_LABEL - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
substituteIntoName(String) - Method in class edu.stanford.smi.protege.util.StandardAction
SUFFIX - Static variable in class edu.stanford.smi.protege.util.FileHandler
SUPERCLASS - Static variable in interface edu.stanford.smi.protege.storage.xml.XMLString.ElementName
SUPERCLASSES_SLOT_WIDGET_LABEL - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
SuperclassTraverser - Class in edu.stanford.smi.protege.util
SuperclassTraverser() - Constructor for class edu.stanford.smi.protege.util.SuperclassTraverser
SuperclassWidget - Class in edu.stanford.smi.protege.widget
  Slot widget for displaying the superclasses of a given class.
SuperclassWidget() - Constructor for class edu.stanford.smi.protege.widget.SuperclassWidget
SUPERSLOT - Static variable in interface edu.stanford.smi.protege.storage.xml.XMLString.ElementName
superslotProperty(Cls, Slot) - Method in class edu.stanford.smi.protege.storage.clips.Parser
SUPERSLOTS_SLOT_WIDGET_LABEL - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
SuperslotsPanel - Class in edu.stanford.smi.protege.widget
SuperslotsPanel(Project) - Constructor for class edu.stanford.smi.protege.widget.SuperslotsPanel
SuperslotTraverser - Class in edu.stanford.smi.protege.util
SuperslotTraverser() - Constructor for class edu.stanford.smi.protege.util.SuperslotTraverser
supportsBatch() - Method in class edu.stanford.smi.protege.storage.database.RobustConnection
supportsCaseInsensitiveMatches() - Method in class edu.stanford.smi.protege.storage.database.RobustConnection
supportsIndexOnFunction() - Method in class edu.stanford.smi.protege.storage.database.RobustConnection
supportsTransactions() - Method in interface edu.stanford.smi.protege.model.Storage
supportsTransactions() - Method in class edu.stanford.smi.protege.storage.database.RobustConnection
swapNode(X, X) - Method in class edu.stanford.smi.protege.util.Tree
SwitchableActionListener - Class in edu.stanford.smi.protege.util
  An action listener which can be temporarily switched off.
SwitchableActionListener() - Constructor for class edu.stanford.smi.protege.util.SwitchableActionListener
SwitchableItemListener - Class in edu.stanford.smi.protege.util
  An item listener that can be temporarily switched off.
SwitchableItemListener() - Constructor for class edu.stanford.smi.protege.util.SwitchableItemListener
SwitchableListener - Class in edu.stanford.smi.protege.util
  A listener that can be temporarily switched off.
SwitchableListener() - Constructor for class edu.stanford.smi.protege.util.SwitchableListener
SwitchableListSelectionListener - Class in edu.stanford.smi.protege.util
  An adapter that converts a selection listener into a list selection listener.
SwitchableListSelectionListener() - Constructor for class edu.stanford.smi.protege.util.SwitchableListSelectionListener
SwitchableSelectionListener - Class in edu.stanford.smi.protege.util
  A base class that adds the ability to switch on and off a listener to the Selection listener interface.
SwitchableSelectionListener() - Constructor for class edu.stanford.smi.protege.util.SwitchableSelectionListener
SwitchTo(int) - Method in class edu.stanford.smi.protege.storage.clips.ParserTokenManager
  Switch to specified lex state.
swizzleInstance(Instance) - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
SYMBOL - Static variable in interface edu.stanford.smi.protege.model.Model.Cls
SYMBOL - Static variable in interface edu.stanford.smi.protege.model.Model.ClsID
SYMBOL - Static variable in class edu.stanford.smi.protege.model.ValueType
symbol() - Method in class edu.stanford.smi.protege.storage.clips.Parser
SYMBOL - Static variable in interface edu.stanford.smi.protege.storage.clips.ParserConstants
  RegularExpression Id.
SYMBOL_CHAR_MIDDLE - Static variable in interface edu.stanford.smi.protege.storage.clips.ParserConstants
  RegularExpression Id.
SYMBOL_CHAR_START - Static variable in interface edu.stanford.smi.protege.storage.clips.ParserConstants
  RegularExpression Id.
SYMBOL_LITERAL - Static variable in interface edu.stanford.smi.protege.storage.clips.ParserConstants
  RegularExpression Id.
SymbolListWidget - Class in edu.stanford.smi.protege.widget
  Widget for acquiring a list of symbol values.
SymbolListWidget() - Constructor for class edu.stanford.smi.protege.widget.SymbolListWidget
symbolToLabel(String) - Static method in class edu.stanford.smi.protege.util.StringUtilities
SymbolValidator - Class in edu.stanford.smi.protege.util
  A validator that tests whether a string is a valid Protege symbol type.
SymbolValidator() - Constructor for class edu.stanford.smi.protege.util.SymbolValidator
SYNCHRONIZE_CLASS_TREE - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
synchronizeClsTree() - Method in class edu.stanford.smi.protege.ui.ProjectView
synchronizeClsTree(Collection) - Method in class edu.stanford.smi.protege.widget.AbstractTabWidget
synchronizeClsTree(Collection) - Method in interface edu.stanford.smi.protege.widget.TabWidget
synchronizeInstances() - Method in class edu.stanford.smi.protege.ui.ProjectView
SynchronizeQueryCallback - Class in edu.stanford.smi.protege.model.query
  This class is a QueryCallback that provides utilities for making the asynchronous executeQuery() call synchronous.
SynchronizeQueryCallback(Object) - Constructor for class edu.stanford.smi.protege.model.query.SynchronizeQueryCallback
synchronizeToInstances(Collection) - Method in class edu.stanford.smi.protege.widget.AbstractTabWidget
synchronizeToInstances(Collection) - Method in interface edu.stanford.smi.protege.widget.TabWidget
SynchronizeTrees - Class in edu.stanford.smi.protege.action
SynchronizeTrees() - Constructor for class edu.stanford.smi.protege.action.SynchronizeTrees
SYSTEM_CLASS - Static variable in interface edu.stanford.smi.protege.model.Model.Cls
SYSTEM_CLASS - Static variable in interface edu.stanford.smi.protege.model.Model.ClsID
SystemFrames - Class in edu.stanford.smi.protege.model
SystemFrames(KnowledgeBase) - Constructor for class edu.stanford.smi.protege.model.SystemFrames
SystemUtilities - Class in edu.stanford.smi.protege.util
  A set of utilities for accessing the underlying system and for manipulating system level objects.
SystemUtilities() - Constructor for class edu.stanford.smi.protege.util.SystemUtilities

## T

tabAdded(ProjectViewEvent) - Method in interface edu.stanford.smi.protege.util.ProjectViewListener
TablePopupMenuMouseListener - Class in edu.stanford.smi.protege.util
  A "right mouse" listener for JTables.
TablePopupMenuMouseListener(JTable) - Constructor for class edu.stanford.smi.protege.util.TablePopupMenuMouseListener
tabSize - Variable in class edu.stanford.smi.protege.storage.clips.SimpleCharStream
TabWidget - Interface in edu.stanford.smi.protege.widget
  Basic interface for all tab widgets.
TEE_OUTPUT_OPTION - Static variable in class edu.stanford.smi.protege.server.socket.TeeOutputStream
TeeAspect - Class in edu.stanford.smi.protege.server.socket
TeeAspect(SocketAspect) - Constructor for class edu.stanford.smi.protege.server.socket.TeeAspect
TeeOutputStream - Class in edu.stanford.smi.protege.server.socket
TeeOutputStream(OutputStream) - Constructor for class edu.stanford.smi.protege.server.socket.TeeOutputStream
TEMPLATE_FACET_ADDED - Static variable in class edu.stanford.smi.protege.event.ClsEvent
TEMPLATE_FACET_REMOVED - Static variable in class edu.stanford.smi.protege.event.ClsEvent
TEMPLATE_FACET_VALUE - Static variable in interface edu.stanford.smi.protege.storage.xml.XMLString.ElementName
TEMPLATE_FACET_VALUE_CHANGED - Static variable in class edu.stanford.smi.protege.event.ClsEvent
TEMPLATE_SLOT - Static variable in interface edu.stanford.smi.protege.storage.xml.XMLString.ElementName
TEMPLATE_SLOT_ADDED - Static variable in class edu.stanford.smi.protege.event.ClsEvent
TEMPLATE_SLOT_CLS_ADDED - Static variable in class edu.stanford.smi.protege.event.SlotEvent
TEMPLATE_SLOT_CLS_REMOVED - Static variable in class edu.stanford.smi.protege.event.SlotEvent
TEMPLATE_SLOT_REMOVED - Static variable in class edu.stanford.smi.protege.event.ClsEvent
TEMPLATE_SLOT_VALUE_CHANGED - Static variable in class edu.stanford.smi.protege.event.ClsEvent
TEMPLATE_SLOTS_SLOT_WIDGET_CARDINALITY - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
TEMPLATE_SLOTS_SLOT_WIDGET_LABEL - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
TEMPLATE_SLOTS_SLOT_WIDGET_NAME - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
TEMPLATE_SLOTS_SLOT_WIDGET_OTHER_FACETS - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
TEMPLATE_SLOTS_SLOT_WIDGET_TYPE - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
TEMPLATE_VALUES_SLOT_WIDGET_LABEL - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
templateFacetAdded(ClsEvent) - Method in class edu.stanford.smi.protege.event.ClsAdapter
templateFacetAdded(ClsEvent) - Method in interface edu.stanford.smi.protege.event.ClsListener
templateFacetRemoved(ClsEvent) - Method in class edu.stanford.smi.protege.event.ClsAdapter
templateFacetRemoved(ClsEvent) - Method in interface edu.stanford.smi.protege.event.ClsListener
templateFacetValueChanged(ClsEvent) - Method in class edu.stanford.smi.protege.event.ClsAdapter
templateFacetValueChanged(ClsEvent) - Method in interface edu.stanford.smi.protege.event.ClsListener
TemplateFrameStore - Class in edu.stanford.smi.protege.model.framestore
TemplateFrameStore() - Constructor for class edu.stanford.smi.protege.model.framestore.TemplateFrameStore
templateSlotAdded(ClsEvent) - Method in class edu.stanford.smi.protege.event.ClsAdapter
templateSlotAdded(ClsEvent) - Method in interface edu.stanford.smi.protege.event.ClsListener
templateSlotClsAdded(SlotEvent) - Method in class edu.stanford.smi.protege.event.SlotAdapter
templateSlotClsAdded(SlotEvent) - Method in interface edu.stanford.smi.protege.event.SlotListener
templateSlotClsRemoved(SlotEvent) - Method in class edu.stanford.smi.protege.event.SlotAdapter
templateSlotClsRemoved(SlotEvent) - Method in interface edu.stanford.smi.protege.event.SlotListener
templateSlotRemoved(ClsEvent) - Method in class edu.stanford.smi.protege.event.ClsAdapter
templateSlotRemoved(ClsEvent) - Method in interface edu.stanford.smi.protege.event.ClsListener
TemplateSlotsWidget - Class in edu.stanford.smi.protege.widget
  Slot widget for displaying the template slots.
TemplateSlotsWidget() - Constructor for class edu.stanford.smi.protege.widget.TemplateSlotsWidget
templateSlotValueChanged(ClsEvent) - Method in class edu.stanford.smi.protege.event.ClsAdapter
templateSlotValueChanged(ClsEvent) - Method in interface edu.stanford.smi.protege.event.ClsListener
templateSlotValueFacet(Cls, Slot) - Method in class edu.stanford.smi.protege.storage.clips.Parser
Text - Class in edu.stanford.smi.protege.resource
  Utility class for accessing assorted text strings.
Text() - Constructor for class edu.stanford.smi.protege.resource.Text
TEXT_COMMENT - Static variable in interface edu.stanford.smi.protege.storage.clips.ParserConstants
  RegularExpression Id.
TextAreaRenderer - Class in edu.stanford.smi.protege.widget
  Source: http://www.roseindia.net/javatutorials/JTable_in_JDK.shtml
TextAreaRenderer() - Constructor for class edu.stanford.smi.protege.widget.TextAreaRenderer
TextAreaWidget - Class in edu.stanford.smi.protege.widget
  Slot widget for acquiring a multiline string of arbitrary length.
TextAreaWidget() - Constructor for class edu.stanford.smi.protege.widget.TextAreaWidget
TextComponentWidget - Class in edu.stanford.smi.protege.widget
  Slot widget for acquiring a string of arbitrary length.
TextComponentWidget() - Constructor for class edu.stanford.smi.protege.widget.TextComponentWidget
TextFieldWidget - Class in edu.stanford.smi.protege.widget
  Slot widget for acquiring a multiline string of arbitrary length.
TextFieldWidget() - Constructor for class edu.stanford.smi.protege.widget.TextFieldWidget
THING - Static variable in interface edu.stanford.smi.protege.model.Model.Cls
THING - Static variable in interface edu.stanford.smi.protege.model.Model.ClsID
TO - Static variable in interface edu.stanford.smi.protege.model.Model.Slot
TO - Static variable in interface edu.stanford.smi.protege.model.Model.SlotID
toArray() - Method in class edu.stanford.smi.protege.util.HashList
  Deprecated. Returns an array containing all of the elements in this list in the correct order.
toArray(Object[]) - Method in class edu.stanford.smi.protege.util.HashList
  Deprecated. Returns an array containing all of the elements in this list in the correct order.
toBoolean(Object) - Static method in class edu.stanford.smi.protege.util.SystemUtilities
toExternalFrameName(Frame) - Static method in class edu.stanford.smi.protege.storage.clips.ClipsFileWriter
toExternalFrameName(String) - Static method in class edu.stanford.smi.protege.storage.clips.ClipsFileWriter
toExternalString(String) - Static method in class edu.stanford.smi.protege.storage.clips.ClipsUtil
toExternalSymbol(String) - Static method in class edu.stanford.smi.protege.storage.clips.ClipsUtil
toFloat(Object) - Static method in class edu.stanford.smi.protege.util.SystemUtilities
toInteger(Object) - Static method in class edu.stanford.smi.protege.util.SystemUtilities
toInternalString(String) - Static method in class edu.stanford.smi.protege.storage.clips.ClipsUtil
toInternalSymbol(String) - Static method in class edu.stanford.smi.protege.storage.clips.ClipsUtil
token - Variable in class edu.stanford.smi.protege.storage.clips.Parser
  Current token.
Token - Class in edu.stanford.smi.protege.storage.clips
  Describes the input token stream.
Token() - Constructor for class edu.stanford.smi.protege.storage.clips.Token
  No-argument constructor
Token(int) - Constructor for class edu.stanford.smi.protege.storage.clips.Token
  Constructs a new token for the specified Image.
Token(int, String) - Constructor for class edu.stanford.smi.protege.storage.clips.Token
  Constructs a new token for the specified Image and Kind.
token_source - Variable in class edu.stanford.smi.protege.storage.clips.Parser
  Generated Token Manager.
tokenImage - Variable in exception edu.stanford.smi.protege.storage.clips.ParseException
  This is a reference to the "tokenImage" array of the generated parser within which the parse error occurred.
tokenImage - Static variable in interface edu.stanford.smi.protege.storage.clips.ParserConstants
  Literal token values.
TokenMgrError - Error in edu.stanford.smi.protege.storage.clips
  Token Manager Error.
TokenMgrError() - Constructor for error edu.stanford.smi.protege.storage.clips.TokenMgrError
  No arg constructor.
TokenMgrError(String, int) - Constructor for error edu.stanford.smi.protege.storage.clips.TokenMgrError
  Constructor with message and reason.
TokenMgrError(boolean, int, int, int, String, char, int) - Constructor for error edu.stanford.smi.protege.storage.clips.TokenMgrError
  Full Constructor.
toList() - Method in class edu.stanford.smi.protege.util.SimpleListModel
TOO_SMALL_TO_COMPRESS - Static variable in class edu.stanford.smi.protege.server.socket.deflate.HybridCompressingOutputStream
tooSmallToCompress() - Static method in class edu.stanford.smi.protege.server.ServerProperties
TOP_LEVEL_SLOT_CLASS - Static variable in class edu.stanford.smi.protege.storage.clips.ClipsUtil
toString() - Method in class edu.stanford.smi.protege.code.generator.wrapping.AbstractWrappedInstance
toString() - Method in exception edu.stanford.smi.protege.exception.OntologyLoadException
toString() - Method in class edu.stanford.smi.protege.model.AbstractFacetConstraint
toString() - Method in class edu.stanford.smi.protege.model.AbstractKnowledgeBaseFactory
toString() - Method in class edu.stanford.smi.protege.model.BrowserSlotPattern
toString() - Method in class edu.stanford.smi.protege.model.DefaultCls
toString() - Method in class edu.stanford.smi.protege.model.DefaultFacet
toString(BrowserSlotPattern) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
toString(Object) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
toString() - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
toString() - Method in class edu.stanford.smi.protege.model.DefaultSimpleInstance
toString() - Method in class edu.stanford.smi.protege.model.DefaultSlot
toString() - Method in class edu.stanford.smi.protege.model.FrameID
toString() - Method in class edu.stanford.smi.protege.model.framestore.AbstractFrameStore
toString() - Method in class edu.stanford.smi.protege.model.framestore.AbstractFrameStoreInvocationHandler
toString() - Method in class edu.stanford.smi.protege.model.framestore.InMemoryFrameDb
toString() - Method in class edu.stanford.smi.protege.model.framestore.Record
toString() - Method in class edu.stanford.smi.protege.model.framestore.ReferenceImpl
toString() - Method in class edu.stanford.smi.protege.model.framestore.Sft
toString() - Method in class edu.stanford.smi.protege.model.framestore.SimpleFrameStore
toString() - Method in class edu.stanford.smi.protege.model.framestore.undo.MacroCommand
toString() - Method in class edu.stanford.smi.protege.model.Project
toString() - Method in class edu.stanford.smi.protege.model.ValueType
toString() - Method in class edu.stanford.smi.protege.model.WidgetDescriptor
toString() - Method in class edu.stanford.smi.protege.plugin.AbstractPlugin
toString() - Method in class edu.stanford.smi.protege.resource.BundleHelper
toString() - Method in class edu.stanford.smi.protege.resource.ResourceKey
toString() - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
toString() - Method in class edu.stanford.smi.protege.server.metaproject.impl.GroupOperationImpl
toString() - Method in class edu.stanford.smi.protege.server.metaproject.impl.OperationImpl
toString() - Method in class edu.stanford.smi.protege.server.metaproject.impl.PolicyControlledObjectImpl
toString() - Method in class edu.stanford.smi.protege.server.metaproject.impl.UnbackedOperationImpl
toString() - Method in class edu.stanford.smi.protege.server.metaproject.impl.UserImpl
toString() - Method in class edu.stanford.smi.protege.server.metaproject.impl.WrappedProtegeInstanceImpl
toString() - Method in class edu.stanford.smi.protege.server.Server
toString() - Method in class edu.stanford.smi.protege.server.Session
toString() - Method in class edu.stanford.smi.protege.server.update.ValueUpdate
toString() - Method in class edu.stanford.smi.protege.storage.clips.Parser
toString() - Method in class edu.stanford.smi.protege.storage.clips.Token
  Returns the image.
toString() - Method in class edu.stanford.smi.protege.storage.database.DefaultDatabaseFrameDb
toString() - Method in class edu.stanford.smi.protege.storage.database.ValueCachingNarrowFrameStore
toString() - Method in class edu.stanford.smi.protege.ui.ClsesTreeTarget
toString() - Method in class edu.stanford.smi.protege.ui.Finder
toString() - Method in class edu.stanford.smi.protege.ui.ParentChildNode
toString() - Method in class edu.stanford.smi.protege.ui.ProjectManager
toString() - Method in class edu.stanford.smi.protege.ui.ProjectMenuBar
toString() - Method in class edu.stanford.smi.protege.ui.ProjectToolBar
toString() - Method in class edu.stanford.smi.protege.ui.ProjectView
toString() - Method in class edu.stanford.smi.protege.ui.SlotsTreeTarget
toString() - Method in class edu.stanford.smi.protege.ui.SlotSubslotNode
toString() - Method in class edu.stanford.smi.protege.ui.SubclassPane
toString() - Method in class edu.stanford.smi.protege.ui.SubslotPane
toString() - Method in class edu.stanford.smi.protege.util.AbstractEvent
toString(Object) - Static method in class edu.stanford.smi.protege.util.AbstractFormatter
toString(Collection) - Static method in class edu.stanford.smi.protege.util.CollectionUtilities
toString() - Method in class edu.stanford.smi.protege.util.DirectoryClassLoader
toString() - Method in class edu.stanford.smi.protege.util.HashList
  Deprecated.
toString() - Method in class edu.stanford.smi.protege.util.LazyTreeNode
toString() - Method in class edu.stanford.smi.protege.util.ListenerCollection
toString() - Method in class edu.stanford.smi.protege.util.ListMultiMap
  Deprecated.
toString(Throwable) - Static method in class edu.stanford.smi.protege.util.Log
toString() - Method in class edu.stanford.smi.protege.util.MessageError
toString() - Method in class edu.stanford.smi.protege.util.PropertyList
toString() - Method in class edu.stanford.smi.protege.util.SelectableContainer
toString() - Method in class edu.stanford.smi.protege.util.SelectableList
toString() - Method in class edu.stanford.smi.protege.util.SelectableTable
toString() - Method in class edu.stanford.smi.protege.util.SelectableTree
toString() - Method in class edu.stanford.smi.protege.util.SimpleListModel
toString() - Method in class edu.stanford.smi.protege.util.transaction.cache.CacheResult
toString() - Method in class edu.stanford.smi.protege.util.transaction.cache.serialize.CacheAbortComplete
toString() - Method in class edu.stanford.smi.protege.util.transaction.cache.serialize.CacheBeginTransaction
toString() - Method in class edu.stanford.smi.protege.util.transaction.cache.serialize.CacheCommitTransaction
toString() - Method in class edu.stanford.smi.protege.util.transaction.cache.serialize.CacheCompleted
toString() - Method in class edu.stanford.smi.protege.util.transaction.cache.serialize.CacheDelete
toString() - Method in class edu.stanford.smi.protege.util.transaction.cache.serialize.CacheModify
toString() - Method in class edu.stanford.smi.protege.util.transaction.cache.serialize.CacheRead
toString() - Method in class edu.stanford.smi.protege.util.transaction.cache.serialize.CacheRollbackTransaction
toString() - Method in class edu.stanford.smi.protege.util.transaction.cache.serialize.CacheStartComplete
toString() - Method in class edu.stanford.smi.protege.widget.DefaultWidgetLayoutStrategy
toString() - Method in class edu.stanford.smi.protege.widget.DefaultWidgetMapper
toString() - Method in class edu.stanford.smi.protege.widget.TemplateSlotsWidget
toStringForFrame(Frame) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
toStringForObject(Object) - Method in class edu.stanford.smi.protege.model.DefaultKnowledgeBase
touch() - Method in class edu.stanford.smi.protege.storage.database.pool.ConnectionInfo
  Synchronized by the connection pool.
toURL(File) - Static method in class edu.stanford.smi.protege.util.FileUtilities
toURL(String, URI) - Static method in class edu.stanford.smi.protege.util.URIUtilities
trace(String, Object, String, Object[]) - Method in class edu.stanford.smi.protege.util.DefaultLogger
trace(String, Object, String, Object[]) - Method in class edu.stanford.smi.protege.util.LegacyLoggerImpl
trace(String, Object, String) - Static method in class edu.stanford.smi.protege.util.Log
  Deprecated. Use getLogger().info();
trace(String, Object, String, Object) - Static method in class edu.stanford.smi.protege.util.Log
  Deprecated. Use getLogger().info();
trace(String, Object, String, Object, Object) - Static method in class edu.stanford.smi.protege.util.Log
  Deprecated. Use getLogger().info();
trace(String, Object, String, Object, Object, Object) - Static method in class edu.stanford.smi.protege.util.Log
  Deprecated. Use getLogger().info();
trace(String, Object, String, Object, Object, Object, Object) - Static method in class edu.stanford.smi.protege.util.Log
  Deprecated. Use getLogger().info();
trace(String, Object, String, Object, Object, Object, Object, Object) - Static method in class edu.stanford.smi.protege.util.Log
  Deprecated. Use getLogger().info();
TraceFrameStoreHandler - Class in edu.stanford.smi.protege.model.framestore
TraceFrameStoreHandler() - Constructor for class edu.stanford.smi.protege.model.framestore.TraceFrameStoreHandler
Transaction<X> - Class in edu.stanford.smi.protege.model
  Encapsulation of method for executing a tranaction.
Transaction(KnowledgeBase) - Constructor for class edu.stanford.smi.protege.model.Transaction
Transaction(KnowledgeBase, String) - Constructor for class edu.stanford.smi.protege.model.Transaction
Transaction(KnowledgeBase, String, String) - Constructor for class edu.stanford.smi.protege.model.Transaction
TRANSACTION_BEGIN - Static variable in class edu.stanford.smi.protege.event.TransactionEvent
TRANSACTION_END - Static variable in class edu.stanford.smi.protege.event.TransactionEvent
TransactionAdapter - Class in edu.stanford.smi.protege.event
TransactionAdapter() - Constructor for class edu.stanford.smi.protege.event.TransactionAdapter
transactionBegin(TransactionEvent) - Method in class edu.stanford.smi.protege.event.TransactionAdapter
transactionBegin(TransactionEvent) - Method in interface edu.stanford.smi.protege.event.TransactionListener
transactionEnded(TransactionEvent) - Method in class edu.stanford.smi.protege.event.TransactionAdapter
transactionEnded(TransactionEvent) - Method in interface edu.stanford.smi.protege.event.TransactionListener
TransactionEvent - Class in edu.stanford.smi.protege.event
TransactionEvent(KnowledgeBase, int, String, Boolean) - Constructor for class edu.stanford.smi.protege.event.TransactionEvent
TransactionException - Exception in edu.stanford.smi.protege.exception
TransactionException() - Constructor for exception edu.stanford.smi.protege.exception.TransactionException
TransactionException(String) - Constructor for exception edu.stanford.smi.protege.exception.TransactionException
TransactionException(String, Throwable) - Constructor for exception edu.stanford.smi.protege.exception.TransactionException
TransactionException(Throwable) - Constructor for exception edu.stanford.smi.protege.exception.TransactionException
TransactionFrameStore - Class in edu.stanford.smi.protege.model.framestore
TransactionFrameStore() - Constructor for class edu.stanford.smi.protege.model.framestore.TransactionFrameStore
TransactionIsolationLevel - Enum in edu.stanford.smi.protege.util.transaction
TransactionListener - Interface in edu.stanford.smi.protege.event
TransactionMonitor - Class in edu.stanford.smi.protege.util.transaction
  This is a simple class that keeps track of running transactions and their nesting.
TransactionMonitor() - Constructor for class edu.stanford.smi.protege.util.transaction.TransactionMonitor
TransferableCollection - Class in edu.stanford.smi.protege.util
  Transferable object for a collection of Frames.
TransferableCollection(Collection) - Constructor for class edu.stanford.smi.protege.util.TransferableCollection
transmitSelection() - Method in class edu.stanford.smi.protege.widget.ClsesTab
transmitSelection() - Method in class edu.stanford.smi.protege.widget.InstancesTab
transmitSelection(Collection) - Method in class edu.stanford.smi.protege.widget.InstancesTab
Traverser - Interface in edu.stanford.smi.protege.util
  Traverse from one object to the next
treatPossibleConnectionLostException(Throwable) - Method in class edu.stanford.smi.protege.server.admin.AbstractRefreshableServerPanel
Tree<X> - Class in edu.stanford.smi.protege.util
  A utility class that maintains a tree.
Tree(X) - Constructor for class edu.stanford.smi.protege.util.Tree
Tree() - Constructor for class edu.stanford.smi.protege.util.Tree
TreeDragSourceListener - Class in edu.stanford.smi.protege.util
  Base class for a drag and drop source side listener on a JTree.
TreeDragSourceListener() - Constructor for class edu.stanford.smi.protege.util.TreeDragSourceListener
TreePopupMenuMouseListener - Class in edu.stanford.smi.protege.util
  A "right mouse" popup listener for a JTree.
TreePopupMenuMouseListener(JTree) - Constructor for class edu.stanford.smi.protege.util.TreePopupMenuMouseListener
TreeSelectionHelper<X> - Class in edu.stanford.smi.protege.util
TreeSelectionHelper(JTree) - Constructor for class edu.stanford.smi.protege.util.TreeSelectionHelper
TreeSelectionListenerAdapter - Class in edu.stanford.smi.protege.util
  An adapter that listens for tree selection events and fires generic `Selectable` events.
TreeSelectionListenerAdapter(Selectable) - Constructor for class edu.stanford.smi.protege.util.TreeSelectionListenerAdapter
TreeTarget - Class in edu.stanford.smi.protege.util
  Standard drop target side drag and drop support for a tree control.
TreeTarget(boolean) - Constructor for class edu.stanford.smi.protege.util.TreeTarget
TRUE - Static variable in class edu.stanford.smi.protege.storage.clips.ClipsUtil
TX_LEVEL - Static variable in class edu.stanford.smi.protege.server.ServerProperties
TYPE - Static variable in interface edu.stanford.smi.protege.storage.clips.ParserConstants
  RegularExpression Id.
TYPE - Static variable in interface edu.stanford.smi.protege.storage.xml.XMLString.ElementName
TYPE_ANY - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
TYPE_BOOLEAN - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
TYPE_CLASS - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
TYPE_FLOAT - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
TYPE_INSTANCE - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
TYPE_INTEGER - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
TYPE_STRING - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
TYPE_SYMBOL - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
TypeFacetRenderer - Class in edu.stanford.smi.protege.ui
  Renderer for the value-type facet.
TypeFacetRenderer() - Constructor for class edu.stanford.smi.protege.ui.TypeFacetRenderer
typeValueDescription(Cls, Slot) - Method in class edu.stanford.smi.protege.storage.clips.Parser

## U

UglyClsWidget - Class in edu.stanford.smi.protege.widget
  A Cls widget used for displaying an "invalid" class form.
UglyClsWidget() - Constructor for class edu.stanford.smi.protege.widget.UglyClsWidget
UglySlotWidget - Class in edu.stanford.smi.protege.widget
  Slot widget that is displayed when another slot widget fails to load (either the constructor or the initialize method throw an exception.
UglySlotWidget() - Constructor for class edu.stanford.smi.protege.widget.UglySlotWidget
UglySlotWidget(String) - Constructor for class edu.stanford.smi.protege.widget.UglySlotWidget
UglyTabWidget - Class in edu.stanford.smi.protege.widget
  A tab widget to display when a specified tab widget fails to load (the constructor or the initialize method throw an exception).
UglyTabWidget() - Constructor for class edu.stanford.smi.protege.widget.UglyTabWidget
UnaryFunction<X,Y> - Interface in edu.stanford.smi.protege.util
  An interface that encapsulates a unary (takes one argument) function.
UnaryPredicate - Interface in edu.stanford.smi.protege.util
  An interface that encapsulates a unary (takes one argument) predicate (function that returns a boolean).
UnbackedOperationImpl - Class in edu.stanford.smi.protege.server.metaproject.impl
UnbackedOperationImpl(String, String) - Constructor for class edu.stanford.smi.protege.server.metaproject.impl.UnbackedOperationImpl
UnbackedOperationImpl(Operation) - Constructor for class edu.stanford.smi.protege.server.metaproject.impl.UnbackedOperationImpl
unBindName() - Method in class edu.stanford.smi.protege.server.Server
undo() - Method in interface edu.stanford.smi.protege.model.CommandManager
undo() - Method in class edu.stanford.smi.protege.model.framestore.undo.UndoFrameStore
UNDO_ACTION - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
UndoAction - Class in edu.stanford.smi.protege.action
  Request that the previous operation be undone.
UndoAction(boolean) - Constructor for class edu.stanford.smi.protege.action.UndoAction
UndoFrameStore - Class in edu.stanford.smi.protege.model.framestore.undo
UndoFrameStore() - Constructor for class edu.stanford.smi.protege.model.framestore.undo.UndoFrameStore
undoIt() - Method in interface edu.stanford.smi.protege.model.framestore.undo.Command
undoIt() - Method in class edu.stanford.smi.protege.model.framestore.undo.DeleteFrameCommand
undoIt() - Method in class edu.stanford.smi.protege.model.framestore.undo.MacroCommand
undoIt() - Method in class edu.stanford.smi.protege.model.framestore.undo.ReplaceFrameCommand
ungetConnection(Connection) - Method in class edu.stanford.smi.protege.storage.database.pool.ConnectionPool
UNIQUE_SESSION_ID - Static variable in class edu.stanford.smi.protege.util.IDGenerator
UniqueStringWidget - Class in edu.stanford.smi.protege.widget
  Slot widget for acquired a unique value for this own slot in the knowledge base.
UniqueStringWidget() - Constructor for class edu.stanford.smi.protege.widget.UniqueStringWidget
UNLIMITED_MATCHES - Static variable in interface edu.stanford.smi.protege.model.framestore.FrameStore
UNLIMITED_MATCHES - Static variable in interface edu.stanford.smi.protege.model.KnowledgeBase
unquote(String) - Static method in class edu.stanford.smi.protege.util.StringUtilities
unrecordCall() - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
unregisterConfigureTab(String) - Static method in class edu.stanford.smi.protege.ui.ConfigureProjectPanel
update(KnowledgeBase) - Static method in class edu.stanford.smi.protege.storage.database.KnowledgeBaseUtils
  Check that the knowledge base passed in has all of the correct current system classes, slots, facets and instances.
updateAddButton() - Method in class edu.stanford.smi.protege.ui.DirectTypesList
updateBorder(Collection) - Method in class edu.stanford.smi.protege.widget.AbstractSlotWidget
updateButtons() - Method in class edu.stanford.smi.protege.ui.ClsInverseRelationshipPanel
updateCache(RemoteSession, Sft) - Method in class edu.stanford.smi.protege.server.update.DeferredOperationCache
updateCache(RemoteSession, Sft, List) - Method in class edu.stanford.smi.protege.server.update.DeferredOperationCache
updateCache(S, V) - Method in interface edu.stanford.smi.protege.util.transaction.cache.Cache
  This call indicates that a read was scheduled but no useful value was retrieved.
updateCache(S, V, R) - Method in interface edu.stanford.smi.protege.util.transaction.cache.Cache
  The caller has received an update that the new value of var is value.
updateCache(S, V) - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.BasicCache
updateCache(S, V, R) - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.BasicCache
updateCache(S, V) - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.CompleteableCache
updateCache(S, V, R) - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.CompleteableCache
updateCache(S, V) - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.InvalidatableCache
updateCache(S, V, R) - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.InvalidatableCache
updateCache(S, V) - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.ReadCommittedCache
updateCache(S, V, R) - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.ReadCommittedCache
updateCache(S, V) - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.ReadUncommittedCache
updateCache(S, V, R) - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.ReadUncommittedCache
updateCache(S, V) - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.RepeatableReadCache
updateCache(S, V, R) - Method in class edu.stanford.smi.protege.util.transaction.cache.impl.RepeatableReadCache
updateDeleteActionState() - Method in class edu.stanford.smi.protege.ui.ClsesPanel
updateDirectFrameCounts(KnowledgeBase) - Method in class edu.stanford.smi.protege.model.FrameCountsImpl
updateEvents(RemoteSession) - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
updateIncludedFrameCounts(KnowledgeBase) - Method in class edu.stanford.smi.protege.model.FrameCountsImpl
UpdateLineColumn(char) - Method in class edu.stanford.smi.protege.storage.clips.SimpleCharStream
updateList() - Method in class edu.stanford.smi.protege.widget.ClsFieldWidget
updateList() - Method in class edu.stanford.smi.protege.widget.InstanceFieldWidget
updateLookAndFeel(Collection) - Method in class edu.stanford.smi.protege.ui.ProjectManager
updateModel() - Method in class edu.stanford.smi.protege.ui.DirectTypesList
updateNextPage(WizardPage) - Method in class edu.stanford.smi.protege.util.Wizard
updateNextPage() - Method in class edu.stanford.smi.protege.util.WizardPage
  Call this when the state on a page changes in a way the next wizard page needs to be changes and/or reinitialized.
updatePath(FileField, String, String) - Method in class edu.stanford.smi.protege.model.KnowledgeBaseSourcesEditor
updateSetPageComplete() - Method in class edu.stanford.smi.protege.storage.database.DatabaseWizardPage
updatesSeenByUntransactedClients(TransactionMonitor) - Static method in class edu.stanford.smi.protege.util.transaction.TransactionMonitor
updatesSeenByUntransactedClients(TransactionMonitor, TransactionIsolationLevel) - Static method in class edu.stanford.smi.protege.util.transaction.TransactionMonitor
updatesSeenByUntransactedClients() - Method in class edu.stanford.smi.protege.util.transaction.TransactionMonitor
updatesSeenByUntransactedClients(TransactionIsolationLevel) - Method in class edu.stanford.smi.protege.util.transaction.TransactionMonitor
updateSystemFrameCounts(KnowledgeBase) - Method in class edu.stanford.smi.protege.model.FrameCountsImpl
updateUI() - Method in class edu.stanford.smi.protege.ui.ProjectManager
updateUI() - Method in class edu.stanford.smi.protege.ui.ProjectToolBar
uploadProjectKb() - Method in interface edu.stanford.smi.protege.server.RemoteServerProject
uploadProjectKb() - Method in class edu.stanford.smi.protege.server.ServerProject
URIField - Class in edu.stanford.smi.protege.util
  A text field that accepts a URI.
URIField(String, URI, String, String) - Constructor for class edu.stanford.smi.protege.util.URIField
URIList - Class in edu.stanford.smi.protege.util
  A list box that is specialized to work with file names.
URIList(String, Collection, String, String) - Constructor for class edu.stanford.smi.protege.util.URIList
URIUtilities - Class in edu.stanford.smi.protege.util
URIUtilities() - Constructor for class edu.stanford.smi.protege.util.URIUtilities
URL_CARD - Static variable in class edu.stanford.smi.protege.util.ProjectChooser
URL_CONNECT_READ_TIMEOUT - Static variable in class edu.stanford.smi.protege.util.ApplicationProperties
URL_CONNECT_TIMEOUT - Static variable in class edu.stanford.smi.protege.util.ApplicationProperties
URL_VIEW_IN_BROWSER - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
urlDecode(String) - Static method in class edu.stanford.smi.protege.util.FileUtilities
urlEncode(String) - Static method in class edu.stanford.smi.protege.util.FileUtilities
URLWidget - Class in edu.stanford.smi.protege.widget
URLWidget() - Constructor for class edu.stanford.smi.protege.widget.URLWidget
useAntialiasing() - Static method in class edu.stanford.smi.protege.util.SystemUtilities
useCompression() - Static method in class edu.stanford.smi.protege.server.ServerProperties
useCompression() - Static method in class edu.stanford.smi.protege.server.socket.CompressionAspect
useCreateProjectFromFilePlugin(Class, String, String) - Static method in class edu.stanford.smi.protege.Application
useCreateProjectFromFilePlugin(Class, String, String) - Method in class edu.stanford.smi.protege.util.ProjectChooser
  Deprecated. Use: useCreateProjectFromFilePlugin(Class pluginClass, String suffix, String fileName, Collection errors)
useCreateProjectFromFilePlugin(Class, String, String, Collection) - Method in class edu.stanford.smi.protege.util.ProjectChooser
useMonitoring() - Static method in class edu.stanford.smi.protege.server.socket.MonitoringAspect
User - Interface in edu.stanford.smi.protege.server.metaproject
USER_FACET - Static variable in interface edu.stanford.smi.protege.storage.clips.ParserConstants
  RegularExpression Id.
USER_PRELOAD - Static variable in class edu.stanford.smi.protege.server.ServerProperties
USER_WORLD - Static variable in class edu.stanford.smi.protege.server.metaproject.MetaProjectConstants
userFacet(Cls, Slot) - Method in class edu.stanford.smi.protege.storage.clips.Parser
UserImpl - Class in edu.stanford.smi.protege.server.metaproject.impl
UserImpl(MetaProjectImpl, Instance) - Constructor for class edu.stanford.smi.protege.server.metaproject.impl.UserImpl
UserInfoTableModel - Class in edu.stanford.smi.protege.server.admin
UserInfoTableModel() - Constructor for class edu.stanford.smi.protege.server.admin.UserInfoTableModel
UserInfoTableModel.Column - Enum in edu.stanford.smi.protege.server.admin
USERS_HOME_DIRECTORY - Static variable in class edu.stanford.smi.protege.util.ApplicationProperties
usesFrame(Frame) - Method in class edu.stanford.smi.protege.model.framestore.ReferenceImpl
useSimulatedDelay() - Static method in class edu.stanford.smi.protege.server.socket.SimulateDelayAspect
useSSL(SSLFactory.Context) - Static method in class edu.stanford.smi.protege.server.socket.SSLFactory

## V

Validatable - Interface in edu.stanford.smi.protege.util
  An interface that allows the implementer to veto a change or to record whatever is necessary when a save succeeds.
ValidatableTabComponent - Class in edu.stanford.smi.protege.util
  A component that contains a JTabbedPane and that implements the `Validatable` interface.
ValidatableTabComponent() - Constructor for class edu.stanford.smi.protege.util.ValidatableTabComponent
validate() - Method in class edu.stanford.smi.protege.util.DefaultRenderer
validateContents() - Method in class edu.stanford.smi.protege.server.RegisterUserServerPanel
validateContents() - Method in class edu.stanford.smi.protege.server.ServerPanel
validateContents() - Method in class edu.stanford.smi.protege.storage.clips.FileSourcesPanel
validateContents() - Method in class edu.stanford.smi.protege.storage.database.DatabaseKnowledgeBaseSourcesEditor
validateContents() - Method in class edu.stanford.smi.protege.storage.xml.FileSourcesPanel
validateContents() - Method in class edu.stanford.smi.protege.ui.ConfigureProtegePropertiesPanel
validateContents() - Method in class edu.stanford.smi.protege.ui.GeneralPreferencesPanel
validateContents() - Method in class edu.stanford.smi.protege.ui.SelectClsesPanel
validateContents() - Method in interface edu.stanford.smi.protege.util.Validatable
  Check whether the current values of the fields in this component are valid.
validateContents() - Method in class edu.stanford.smi.protege.util.ValidatableTabComponent
validateContents() - Method in class edu.stanford.smi.protege.widget.ButtonConfigurationPanel
validateContents() - Method in class edu.stanford.smi.protege.widget.FormWidgetConfigurationLayoutTab
validateContents() - Method in class edu.stanford.smi.protege.widget.FormWidgetConfigurationWidgetsTab
validateContents() - Method in class edu.stanford.smi.protege.widget.GeneralWidgetConfigurationPanel
validateContents() - Method in class edu.stanford.smi.protege.widget.KAToolTabConfigurationPanel
  saveContents method comment.
validateContents() - Method in class edu.stanford.smi.protege.widget.ReadOnlyWidgetConfigurationPanel
validateText(String) - Method in class edu.stanford.smi.protege.widget.TextComponentWidget
Validator - Interface in edu.stanford.smi.protege.util
  An interface that encapsulates the logic that decides if a particular object is "valid" in some context.
VALUE - Static variable in interface edu.stanford.smi.protege.storage.clips.ParserConstants
  RegularExpression Id.
VALUE - Static variable in interface edu.stanford.smi.protege.storage.xml.XMLString.ElementName
VALUE_ADD - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
VALUE_COPY - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
VALUE_CREATE - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
VALUE_DELETE - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
VALUE_MOVE_DOWN - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
VALUE_MOVE_UP - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
VALUE_REMOVE - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
VALUE_TYPE - Static variable in interface edu.stanford.smi.protege.model.Model.Facet
VALUE_TYPE - Static variable in interface edu.stanford.smi.protege.model.Model.FacetID
VALUE_TYPE - Static variable in interface edu.stanford.smi.protege.model.Model.Slot
VALUE_TYPE - Static variable in interface edu.stanford.smi.protege.model.Model.SlotID
VALUE_TYPE - Static variable in interface edu.stanford.smi.protege.storage.xml.XMLString.AttributeName
VALUE_TYPE_SLOT_WIDGET_LABEL - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
VALUE_VIEW - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
VALUE_VIEW_REFERENCES - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
ValueCachingNarrowFrameStore - Class in edu.stanford.smi.protege.storage.database
ValueCachingNarrowFrameStore(DatabaseFrameDb) - Constructor for class edu.stanford.smi.protege.storage.database.ValueCachingNarrowFrameStore
valueChanged(ListSelectionEvent) - Method in class edu.stanford.smi.protege.util.SwitchableListSelectionListener
valueChanged(TreeSelectionEvent) - Method in class edu.stanford.smi.protege.util.TreeSelectionListenerAdapter
valueChanged() - Method in class edu.stanford.smi.protege.widget.AbstractSlotWidget
valueOf(String) - Static method in enum edu.stanford.smi.protege.event.ServerProjectEvent.ServerEventTypes
  Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in class edu.stanford.smi.protege.model.ValueType
valueOf(String) - Static method in enum edu.stanford.smi.protege.server.admin.UserInfoTableModel.Column
  Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum edu.stanford.smi.protege.server.framestore.background.CacheRequestReason
  Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum edu.stanford.smi.protege.server.framestore.background.ClientCacheRequestor.ThreadStatus
  Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum edu.stanford.smi.protege.server.metaproject.impl.MetaProjectImpl.ClsEnum
  Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum edu.stanford.smi.protege.server.metaproject.impl.MetaProjectImpl.InstanceEnum
  Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum edu.stanford.smi.protege.server.metaproject.impl.MetaProjectImpl.SlotEnum
  Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum edu.stanford.smi.protege.server.ServerProject.ProjectStatus
  Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum edu.stanford.smi.protege.server.socket.SSLFactory.Context
  Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum edu.stanford.smi.protege.storage.database.DatabaseProperty
  Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum edu.stanford.smi.protege.storage.database.KnownDatabase
  Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum edu.stanford.smi.protege.storage.database.stmt.Column
  Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum edu.stanford.smi.protege.ui.FrameRenderer.InstanceCountType
  Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum edu.stanford.smi.protege.util.MessageError.Severity
  Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum edu.stanford.smi.protege.util.ProjectViewEvent.Type
  Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum edu.stanford.smi.protege.util.transaction.TransactionIsolationLevel
  Returns the enum constant of this type with the specified name.
values() - Static method in enum edu.stanford.smi.protege.event.ServerProjectEvent.ServerEventTypes
  Returns an array containing the constants of this enum type, in the order they're declared.
VALUES - Static variable in interface edu.stanford.smi.protege.model.Model.Facet
VALUES - Static variable in interface edu.stanford.smi.protege.model.Model.FacetID
VALUES - Static variable in interface edu.stanford.smi.protege.model.Model.Slot
VALUES - Static variable in interface edu.stanford.smi.protege.model.Model.SlotID
values() - Static method in enum edu.stanford.smi.protege.server.admin.UserInfoTableModel.Column
  Returns an array containing the constants of this enum type, in the order they're declared.
values() - Static method in enum edu.stanford.smi.protege.server.framestore.background.CacheRequestReason
  Returns an array containing the constants of this enum type, in the order they're declared.
values() - Static method in enum edu.stanford.smi.protege.server.framestore.background.ClientCacheRequestor.ThreadStatus
  Returns an array containing the constants of this enum type, in the order they're declared.
values() - Static method in enum edu.stanford.smi.protege.server.metaproject.impl.MetaProjectImpl.ClsEnum
  Returns an array containing the constants of this enum type, in the order they're declared.
values() - Static method in enum edu.stanford.smi.protege.server.metaproject.impl.MetaProjectImpl.InstanceEnum
  Returns an array containing the constants of this enum type, in the order they're declared.
values() - Static method in enum edu.stanford.smi.protege.server.metaproject.impl.MetaProjectImpl.SlotEnum
  Returns an array containing the constants of this enum type, in the order they're declared.
values() - Static method in enum edu.stanford.smi.protege.server.ServerProject.ProjectStatus
  Returns an array containing the constants of this enum type, in the order they're declared.
values() - Static method in enum edu.stanford.smi.protege.server.socket.SSLFactory.Context
  Returns an array containing the constants of this enum type, in the order they're declared.
values() - Static method in enum edu.stanford.smi.protege.storage.database.DatabaseProperty
  Returns an array containing the constants of this enum type, in the order they're declared.
values() - Static method in enum edu.stanford.smi.protege.storage.database.KnownDatabase
  Returns an array containing the constants of this enum type, in the order they're declared.
values() - Static method in enum edu.stanford.smi.protege.storage.database.stmt.Column
  Returns an array containing the constants of this enum type, in the order they're declared.
values() - Static method in enum edu.stanford.smi.protege.ui.FrameRenderer.InstanceCountType
  Returns an array containing the constants of this enum type, in the order they're declared.
values() - Static method in enum edu.stanford.smi.protege.util.MessageError.Severity
  Returns an array containing the constants of this enum type, in the order they're declared.
values() - Static method in enum edu.stanford.smi.protege.util.ProjectViewEvent.Type
  Returns an array containing the constants of this enum type, in the order they're declared.
values() - Static method in enum edu.stanford.smi.protege.util.transaction.TransactionIsolationLevel
  Returns an array containing the constants of this enum type, in the order they're declared.
ValuesComponent - Interface in edu.stanford.smi.protege.widget
  Interface for the component that appears below the combo box in the value-type widget on the slot form.
ValueType - Class in edu.stanford.smi.protege.model
  An enumeration class for the types of slots.
valueType(Object, FrameFactory) - Static method in class edu.stanford.smi.protege.storage.database.DatabaseUtils
ValueTypeConstraint - Class in edu.stanford.smi.protege.model
  Constraint that checks a set of values to determine if they are of the right type for a slot.
ValueTypeConstraint() - Constructor for class edu.stanford.smi.protege.model.ValueTypeConstraint
ValueTypeRenderer - Class in edu.stanford.smi.protege.widget
  TODO Class Comment
ValueTypeRenderer() - Constructor for class edu.stanford.smi.protege.widget.ValueTypeRenderer
ValueTypeWidget - Class in edu.stanford.smi.protege.widget
  Widget for setting the value type of a slot or a cls-slot pair.
ValueTypeWidget() - Constructor for class edu.stanford.smi.protege.widget.ValueTypeWidget
ValueUpdate - Class in edu.stanford.smi.protege.server.update
ValueUpdate(Frame, SerializedCacheUpdate<RemoteSession, Sft, List>) - Constructor for class edu.stanford.smi.protege.server.update.ValueUpdate
verifyPassword(String) - Method in class edu.stanford.smi.protege.server.metaproject.impl.UserImpl
verifyPassword(String) - Method in interface edu.stanford.smi.protege.server.metaproject.User
VERSION - Static variable in interface edu.stanford.smi.protege.storage.clips.ParserConstants
  RegularExpression Id.
versionInfo() - Method in class edu.stanford.smi.protege.storage.clips.Parser
VERTICAL_FILL_DEFAULT - Static variable in class edu.stanford.smi.protege.util.ResizingLayout
VERTICAL_STRETCHER - Static variable in class edu.stanford.smi.protege.util.ResizingLayout
ViewAction - Class in edu.stanford.smi.protege.util
  An action for the standard view button that appears on many slot widgets.
ViewAction(ResourceKey, Selectable) - Constructor for class edu.stanford.smi.protege.util.ViewAction
ViewAction(Selectable) - Constructor for class edu.stanford.smi.protege.util.ViewAction
ViewAction(String, Selectable) - Constructor for class edu.stanford.smi.protege.util.ViewAction
ViewAction(String, Selectable, Icon) - Constructor for class edu.stanford.smi.protege.util.ViewAction
ViewClsAction - Class in edu.stanford.smi.protege.action
ViewClsAction(Selectable) - Constructor for class edu.stanford.smi.protege.action.ViewClsAction
ViewSelector - Class in edu.stanford.smi.protege.ui
  TODO Class Comment
ViewSelector(ProjectView) - Constructor for class edu.stanford.smi.protege.ui.ViewSelector
VISIBILITY - Static variable in interface edu.stanford.smi.protege.storage.clips.ParserConstants
  RegularExpression Id.
VISIBILITY_CHANGED - Static variable in class edu.stanford.smi.protege.event.FrameEvent
visibilityChanged(FrameEvent) - Method in class edu.stanford.smi.protege.event.FrameAdapter
visibilityChanged(FrameEvent) - Method in interface edu.stanford.smi.protege.event.FrameListener
visibilityFacet(Cls, Slot) - Method in class edu.stanford.smi.protege.storage.clips.Parser

## W

WAIT_FOR_OVERLOADED_CLIENT - Static variable in class edu.stanford.smi.protege.server.framestore.background.FrameCalculator
WaitCursor - Class in edu.stanford.smi.protege.util
  A wait cursor that can to enabled and disabled on command.
WaitCursor(Component) - Constructor for class edu.stanford.smi.protege.util.WaitCursor
waitForResults() - Method in class edu.stanford.smi.protege.model.query.SynchronizeQueryCallback
waitForShutdown() - Method in class edu.stanford.smi.protege.util.ExclusiveRunnable
  Wait for execution to complete.
waitForStartup() - Method in class edu.stanford.smi.protege.util.ExclusiveRunnable
  Waits for the execution to start.
waitForTransactionsToComplete() - Method in class edu.stanford.smi.protege.server.framestore.ServerFrameStore
warning(SAXParseException) - Method in class edu.stanford.smi.protege.storage.xml.XMLHandler
warning(X) - Method in class edu.stanford.smi.protege.util.DefaultErrorHandler
warning(String, Object, String, Object[]) - Method in class edu.stanford.smi.protege.util.DefaultLogger
warning(E) - Method in interface edu.stanford.smi.protege.util.ErrorHandler
  Receive notification of a warning.
warning(String, Object, String, Object[]) - Method in class edu.stanford.smi.protege.util.LegacyLoggerImpl
warning(String, Object, String) - Static method in class edu.stanford.smi.protege.util.Log
  Deprecated. Use getLogger().warning();
warning(String, Object, String, Object) - Static method in class edu.stanford.smi.protege.util.Log
  Deprecated. Use getLogger().warning();
warning(String, Object, String, Object, Object) - Static method in class edu.stanford.smi.protege.util.Log
  Deprecated. Use getLogger().warning();
warning(String, Object, String, Object, Object, Object) - Static method in class edu.stanford.smi.protege.util.Log
  Deprecated. Use getLogger().warning();
warning(String, Object, String, Object, Object, Object, Object) - Static method in class edu.stanford.smi.protege.util.Log
  Deprecated. Use getLogger().warning();
WELCOME_DIALOG - Static variable in class edu.stanford.smi.protege.util.ApplicationProperties
WELCOME_DIALOG_ALL_TOPICS - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
WELCOME_DIALOG_FAQ - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
WELCOME_DIALOG_GETTING_STARTED - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
WELCOME_DIALOG_HELP_TITLE - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
WELCOME_DIALOG_NEW - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
WELCOME_DIALOG_NEW_TOOLTIP - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
WELCOME_DIALOG_OPEN - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
WELCOME_DIALOG_OPEN_OTHER - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
WELCOME_DIALOG_OPEN_OTHER_TOOLTIP - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
WELCOME_DIALOG_OPEN_RECENT_PROJECT_TITLE - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
WELCOME_DIALOG_OPEN_TOOLTIP - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
WELCOME_DIALOG_START_IN_SERVER_PANEL - Static variable in class edu.stanford.smi.protege.util.ApplicationProperties
WELCOME_DIALOG_USERS_GUIDE - Static variable in class edu.stanford.smi.protege.resource.ResourceKey
WelcomeDialog - Class in edu.stanford.smi.protege.ui
  Startup dialog that is displayed when a user starts Protege (without double clicking on a project file).
WelcomeDialog(Frame, String, boolean) - Constructor for class edu.stanford.smi.protege.ui.WelcomeDialog
Widget - Interface in edu.stanford.smi.protege.widget
  Basic interface for all widgets.
WidgetAdapter - Class in edu.stanford.smi.protege.event
  Adapter class for listeners to widget events.
WidgetAdapter() - Constructor for class edu.stanford.smi.protege.event.WidgetAdapter
WidgetClassNameRenderer - Class in edu.stanford.smi.protege.ui
  Renderer for widget names.
WidgetClassNameRenderer() - Constructor for class edu.stanford.smi.protege.ui.WidgetClassNameRenderer
WidgetConfigurationPanel - Class in edu.stanford.smi.protege.widget
  Default configuration panel for slot widgets.
WidgetConfigurationPanel(SlotWidget) - Constructor for class edu.stanford.smi.protege.widget.WidgetConfigurationPanel
WidgetDescriptor - Class in edu.stanford.smi.protege.model
  Essentially a serialization of a widget.
WidgetDescriptorRenderer - Class in edu.stanford.smi.protege.widget
  A renderer for widget descriptors.
WidgetDescriptorRenderer(Project) - Constructor for class edu.stanford.smi.protege.widget.WidgetDescriptorRenderer
WidgetEvent - Class in edu.stanford.smi.protege.event
  Event generated when a widget changes.
WidgetEvent(Widget, int) - Constructor for class edu.stanford.smi.protege.event.WidgetEvent
WidgetEventDispatcher - Class in edu.stanford.smi.protege.event
  Dispatcher to send widget events to their listeners.
WidgetEventDispatcher() - Constructor for class edu.stanford.smi.protege.event.WidgetEventDispatcher
WidgetLayoutStrategy - Interface in edu.stanford.smi.protege.widget
  Interface for the strategy pattern for laying out the slot widgets on a cls widget.
WidgetListener - Interface in edu.stanford.smi.protege.event
  Listener interface for widgets.
WidgetMapper - Interface in edu.stanford.smi.protege.widget
  An interface for implementations which can map a cls/slot/facet combination to a slot widget.
WidgetUtilities - Class in edu.stanford.smi.protege.widget
  A collection of utilities useful for creating and working with widgets.
WidgetUtilities() - Constructor for class edu.stanford.smi.protege.widget.WidgetUtilities
Wizard - Class in edu.stanford.smi.protege.util
  TODO Class Comment
Wizard(JComponent, String) - Constructor for class edu.stanford.smi.protege.util.Wizard
Wizard(Dialog, String) - Constructor for class edu.stanford.smi.protege.util.Wizard
WizardPage - Class in edu.stanford.smi.protege.util
  A Page used with the Wizard framework.
WizardPage(String, Wizard) - Constructor for class edu.stanford.smi.protege.util.WizardPage
WORK_INFO_TIMEOUT - Static variable in class edu.stanford.smi.protege.server.framestore.background.WorkInfo
WORK_INFO_TIMEOUT_PROPERTY - Static variable in class edu.stanford.smi.protege.server.framestore.background.WorkInfo
WorkInfo - Class in edu.stanford.smi.protege.server.framestore.background
WorkInfo() - Constructor for class edu.stanford.smi.protege.server.framestore.background.WorkInfo
wrapInstance(MetaProjectImpl.ClsEnum, Instance) - Method in class edu.stanford.smi.protege.server.metaproject.impl.MetaProjectImpl
WrappedProtegeInstanceImpl - Class in edu.stanford.smi.protege.server.metaproject.impl
WrappedProtegeInstanceImpl(MetaProjectImpl, Instance, MetaProjectImpl.ClsEnum) - Constructor for class edu.stanford.smi.protege.server.metaproject.impl.WrappedProtegeInstanceImpl
WrappedProtegeInstanceWithPropsImpl - Class in edu.stanford.smi.protege.server.metaproject.impl
WrappedProtegeInstanceWithPropsImpl(MetaProjectImpl, Instance, MetaProjectImpl.ClsEnum) - Constructor for class edu.stanford.smi.protege.server.metaproject.impl.WrappedProtegeInstanceWithPropsImpl
WRITE - Static variable in class edu.stanford.smi.protege.server.metaproject.impl.OperationImpl
  Deprecated. - Use constants from `MetaProjectConstants`
write(int) - Method in class edu.stanford.smi.protege.server.socket.deflate.CompressingOutputStream
write(OutputStream) - Method in class edu.stanford.smi.protege.server.socket.deflate.PacketHeader
write(int) - Method in class edu.stanford.smi.protege.server.socket.MonitoringOutputStream
write(byte[], int, int) - Method in class edu.stanford.smi.protege.server.socket.MonitoringOutputStream
write(int) - Method in class edu.stanford.smi.protege.server.socket.SimulateDelayOutputStream
write(byte[], int, int) - Method in class edu.stanford.smi.protege.server.socket.SimulateDelayOutputStream
write(int) - Method in class edu.stanford.smi.protege.server.socket.TeeOutputStream
write(byte[], int, int) - Method in class edu.stanford.smi.protege.server.socket.TeeOutputStream
write(X) - Method in class edu.stanford.smi.protege.server.util.FifoWriter
WRITE - Static variable in interface edu.stanford.smi.protege.storage.clips.ParserConstants
  RegularExpression Id.

## X

XMLHandler - Class in edu.stanford.smi.protege.storage.xml
XMLHandler(KnowledgeBase, boolean, Collection) - Constructor for class edu.stanford.smi.protege.storage.xml.XMLHandler
XMLKnowledgeBaseFactory - Class in edu.stanford.smi.protege.storage.xml
  Storage backend to maintain a knowledge base in XML format.
XMLKnowledgeBaseFactory() - Constructor for class edu.stanford.smi.protege.storage.xml.XMLKnowledgeBaseFactory
XMLLoader - Class in edu.stanford.smi.protege.storage.xml
  TODO Class Comment
XMLLoader(KnowledgeBase, BufferedReader, boolean, Collection) - Constructor for class edu.stanford.smi.protege.storage.xml.XMLLoader
XMLStorer - Class in edu.stanford.smi.protege.storage.xml
  TODO Class Comment
XMLStorer(KnowledgeBase, Writer, Collection) - Constructor for class edu.stanford.smi.protege.storage.xml.XMLStorer
XMLString - Interface in edu.stanford.smi.protege.storage.xml
  TODO Class Comment
XMLString.AttributeName - Interface in edu.stanford.smi.protege.storage.xml
XMLString.AttributeValue - Interface in edu.stanford.smi.protege.storage.xml
XMLString.ElementName - Interface in edu.stanford.smi.protege.storage.xml
XMLUtil - Class in edu.stanford.smi.protege.storage.xml
  Escape special XML characters.
XMLUtil() - Constructor for class edu.stanford.smi.protege.storage.xml.XMLUtil

## Y

YellowStickyWidget - Class in edu.stanford.smi.protege.widget
  Slot widget for handling annotation text for instance annotations (yellow stickies)
YellowStickyWidget() - Constructor for class edu.stanford.smi.protege.widget.YellowStickyWidget
YES_BUTTON_LABEL - Static variable in class edu.stanford.smi.protege.resource.ResourceKey

## Z

ZipServerSocket - Class in edu.stanford.smi.protege.server.util
ZipServerSocket(int) - Constructor for class edu.stanford.smi.protege.server.util.ZipServerSocket
ZipSocket - Class in edu.stanford.smi.protege.server.util
ZipSocket() - Constructor for class edu.stanford.smi.protege.server.util.ZipSocket
ZipSocket(String, int) - Constructor for class edu.stanford.smi.protege.server.util.ZipSocket

## _

_backgroundNormalColor - Variable in class edu.stanford.smi.protege.util.DefaultRenderer
_backgroundSelectionColor - Variable in class edu.stanford.smi.protege.util.DefaultRenderer
_backgroundSelectionColorOverride - Variable in class edu.stanford.smi.protege.util.DefaultRenderer
_cachedLookAndFeel - Variable in class edu.stanford.smi.protege.util.DefaultRenderer
_clsBrowserHeader - Variable in class edu.stanford.smi.protege.ui.ClsesPanel
_clsTree - Variable in class edu.stanford.smi.protege.ui.SelectInstancesPanel
_connections - Variable in class edu.stanford.smi.protege.storage.database.AbstractDatabaseFrameDb
_createAction - Variable in class edu.stanford.smi.protege.ui.ClsesPanel
_createAction - Variable in class edu.stanford.smi.protege.widget.TemplateSlotsWidget
_deleteAction - Variable in class edu.stanford.smi.protege.ui.ClsesPanel
_directAllInstanceComboBox - Variable in class edu.stanford.smi.protege.ui.SelectInstancesPanel
_displayAbstractIcon - Variable in class edu.stanford.smi.protege.ui.FrameRenderer
_displayDefaultMetaclassIcon - Variable in class edu.stanford.smi.protege.ui.FrameRenderer
_displayFrameTypeIcon - Variable in class edu.stanford.smi.protege.ui.FrameRenderer
_displayHiddenIcon - Variable in class edu.stanford.smi.protege.ui.FrameRenderer
_displayMultipleParentsIcon - Variable in class edu.stanford.smi.protege.ui.FrameRenderer
_displayType - Variable in class edu.stanford.smi.protege.ui.FrameRenderer
_driver - Variable in class edu.stanford.smi.protege.storage.database.AbstractDatabaseFrameDb
_dropTargetArea - Variable in class edu.stanford.smi.protege.util.DefaultRenderer
_dropTargetLineColor - Variable in class edu.stanford.smi.protege.util.DefaultRenderer
_elements - Variable in class edu.stanford.smi.protege.util.DefaultRenderer
_focusRectColor - Variable in class edu.stanford.smi.protege.util.DefaultRenderer
_fontMetrics - Variable in class edu.stanford.smi.protege.util.DefaultRenderer
_foregroundNormalColor - Variable in class edu.stanford.smi.protege.util.DefaultRenderer
_foregroundSelectionColor - Variable in class edu.stanford.smi.protege.util.DefaultRenderer
_frameFactory - Variable in class edu.stanford.smi.protege.storage.database.AbstractDatabaseFrameDb
_grayedSecondaryText - Variable in class edu.stanford.smi.protege.util.DefaultRenderer
_grayedText - Variable in class edu.stanford.smi.protege.util.DefaultRenderer
_hasFocus - Variable in class edu.stanford.smi.protege.util.DefaultRenderer
_hasLoadedIconFlags - Variable in class edu.stanford.smi.protege.ui.FrameRenderer
_instanceCountType - Variable in class edu.stanford.smi.protege.ui.FrameRenderer
_instanceList - Variable in class edu.stanford.smi.protege.ui.SelectInstancesPanel
_isInclude - Variable in class edu.stanford.smi.protege.storage.database.AbstractDatabaseFrameDb
_isSelected - Variable in class edu.stanford.smi.protege.util.DefaultRenderer
_labeledComponent - Variable in class edu.stanford.smi.protege.ui.ClsesPanel
_list - Variable in class edu.stanford.smi.protege.ui.ListFinder
_password - Variable in class edu.stanford.smi.protege.storage.database.AbstractDatabaseFrameDb
_project - Variable in class edu.stanford.smi.protege.ui.ClsesPanel
_relationshipPane - Variable in class edu.stanford.smi.protege.ui.ClsesPanel
_row - Variable in class edu.stanford.smi.protege.util.DefaultRenderer
_subclassPane - Variable in class edu.stanford.smi.protege.ui.ClsesPanel
_table - Variable in class edu.stanford.smi.protege.storage.database.AbstractDatabaseFrameDb
_tree - Variable in class edu.stanford.smi.protege.util.DefaultRenderer
_treeBackgroundNormalColor - Variable in class edu.stanford.smi.protege.util.DefaultRenderer
_treeBackgroundSelectionColor - Variable in class edu.stanford.smi.protege.util.DefaultRenderer
_treeForegroundNormalColor - Variable in class edu.stanford.smi.protege.util.DefaultRenderer
_treeForegroundSelectionColor - Variable in class edu.stanford.smi.protege.util.DefaultRenderer
_url - Variable in class edu.stanford.smi.protege.storage.database.AbstractDatabaseFrameDb
_user - Variable in class edu.stanford.smi.protege.storage.database.AbstractDatabaseFrameDb
_value - Variable in class edu.stanford.smi.protege.util.DefaultRenderer
_viewAction - Variable in class edu.stanford.smi.protege.ui.ClsesPanel

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