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## Deprecated API

Contents

- Deprecated Classes
- Deprecated Fields
- Deprecated Methods
- Deprecated Constructors

Deprecated Classes
edu.stanford.smi.protege.util.CacheMap use the transaction cache utilities.
edu.stanford.smi.protege.util.HashList Use ArrayList instead.
edu.stanford.smi.protege.util.ListMultiMap - use ArrayListMultiMap instead

Deprecated Fields
edu.stanford.smi.protege.model.Model.Slot.DIRECT_ATTACHED_CLASSES Use #DIRECT_DOMAIN
edu.stanford.smi.protege.model.Model.Slot.DIRECT_TYPE Use #DIRECT_TYPES
edu.stanford.smi.protege.model.Model.SlotID.DIRECT_TYPE Use #DIRECT_TYPES
edu.stanford.smi.protege.event.KnowledgeBaseEvent.FRAME_NAME_CHANGED
edu.stanford.smi.protege.event.FrameEvent.NAME_CHANGED
edu.stanford.smi.protege.server.metaproject.impl.OperationImpl.ONTOLOGY_TAB_READ - Use constants from `MetaProjectConstants`
edu.stanford.smi.protege.server.metaproject.impl.OperationImpl.ONTOLOGY_TAB_WRITE - Use constants from `MetaProjectConstants`
edu.stanford.smi.protege.server.metaproject.MetaProjectConstants.OPERATION_ONTOLOGY_TAB_READ - Use constants from `OwlMetaProjectConstants`
edu.stanford.smi.protege.server.metaproject.MetaProjectConstants.OPERATION_ONTOLOGY_TAB_WRITE - Use constants from `OwlMetaProjectConstants`
edu.stanford.smi.protege.server.metaproject.MetaProjectConstants.OPERATION_PROPERTY_TAB_READ - Use constants from `OwlMetaProjectConstants`
edu.stanford.smi.protege.server.metaproject.MetaProjectConstants.OPERATION_PROPERTY_TAB_WRITE - Use constants from `OwlMetaProjectConstants`
edu.stanford.smi.protege.server.metaproject.impl.OperationImpl.PROPERTY_TAB_READ - Use constants from `MetaProjectConstants`
edu.stanford.smi.protege.server.metaproject.impl.OperationImpl.PROPERTY_TAB_WRITE - Use constants from `MetaProjectConstants`
edu.stanford.smi.protege.server.metaproject.impl.OperationImpl.READ - Use constants from `MetaProjectConstants`
edu.stanford.smi.protege.server.metaproject.impl.OperationImpl.WRITE - Use constants from `MetaProjectConstants`

Deprecated Methods
edu.stanford.smi.protege.model.DefaultKnowledgeBase.addOwnSlotValue(Frame, Slot, Object) use #addDirectOwnSlotValues
edu.stanford.smi.protege.model.DefaultKnowledgeBase.addTemplateFacetValue(Cls, Slot, Facet, Object) use #setDirectTemplateFacetValues
edu.stanford.smi.protege.model.DefaultKnowledgeBase.addTemplateSlotValue(Cls, Slot, Object) use #setDirectTemplateSlotValues
edu.stanford.smi.protege.model.Project.createRuntimeWidget(Instance) use createRuntimeClsWidget
edu.stanford.smi.protege.model.KnowledgeBase.createUniqueFrameName(String) pass "null" in as a frame name to a create method to get a gensym name
edu.stanford.smi.protege.model.DefaultKnowledgeBase.createUniqueFrameName(String) no longer needed
edu.stanford.smi.protege.model.KnowledgeBase.endTransaction() Use #commitTransaction() Ends the recently opened transaction and commits the state.
edu.stanford.smi.protege.model.DefaultKnowledgeBase.endTransaction() Use #commitTransaction
edu.stanford.smi.protege.widget.AbstractWidget.endTransaction() Use commitTranscation() or rollbackTransaction()
edu.stanford.smi.protege.model.KnowledgeBase.endTransaction(boolean) Use #commitTransaction or #rollbackTransaction() Ends the recently opened transaction and commits or rollback based on doCommit value
edu.stanford.smi.protege.model.DefaultKnowledgeBase.endTransaction(boolean) Use #commitTransaction or #rollbackTransaction
edu.stanford.smi.protege.util.Log.enter(Object, String) Use #getLogger().enter()
edu.stanford.smi.protege.util.Log.enter(Object, String, Object) Use #getLogger().enter()
edu.stanford.smi.protege.util.Log.enter(Object, String, Object, Object) Use #getLogger().enter()
edu.stanford.smi.protege.util.Log.enter(Object, String, Object, Object, Object) Use #getLogger().enter()
edu.stanford.smi.protege.util.Log.enter(Object, String, Object, Object, Object, Object) Use #getLogger().enter()
edu.stanford.smi.protege.util.Log.enter(Object, String, Object, Object, Object, Object, Object) Use #getLogger().enter()
edu.stanford.smi.protege.util.Log.error(String, Object, String) Use getLogger().severe();
edu.stanford.smi.protege.util.Log.error(String, Object, String, Object) Use getLogger().severe();
edu.stanford.smi.protege.util.Log.error(String, Object, String, Object, Object) Use getLogger().severe();
edu.stanford.smi.protege.util.Log.error(String, Object, String, Object, Object, Object) Use getLogger().severe();
edu.stanford.smi.protege.util.Log.error(String, Object, String, Object, Object, Object, Object) Use getLogger().severe();
edu.stanford.smi.protege.util.Log.error(String, Object, String, Object, Object, Object, Object, Object) Use getLogger().severe();
edu.stanford.smi.protege.util.Log.exception(Throwable, Object, String) Use getLogger().severe();
edu.stanford.smi.protege.util.Log.exception(Throwable, Object, String, Object) Use getLogger().severe();
edu.stanford.smi.protege.util.Log.exception(Throwable, Object, String, Object, Object) Use getLogger().severe();
edu.stanford.smi.protege.util.Log.exception(Throwable, Object, String, Object, Object, Object) Use getLogger().severe();
edu.stanford.smi.protege.util.Log.exception(Throwable, Object, String, Object, Object, Object, Object) Use getLogger().severe();
edu.stanford.smi.protege.util.Log.exception(Throwable, Object, String, Object, Object, Object, Object, Object) Use getLogger().severe();
edu.stanford.smi.protege.util.Log.exit(Object, String) Use getLogger().exiting();
edu.stanford.smi.protege.event.KnowledgeBaseAdapter.frameNameChanged(KnowledgeBaseEvent)
edu.stanford.smi.protege.model.DefaultCls.getBrowserSlot()
edu.stanford.smi.protege.model.Cls.getBrowserSlot()
edu.stanford.smi.protege.model.Project.getBrowserSlot(Cls)
edu.stanford.smi.protege.storage.clips.SimpleCharStream.getColumn()
edu.stanford.smi.protege.ui.InstanceDisplay.getCurrentClsWidget() Use #getCurrentClsWidgets() or #getFirstClsWidget
edu.stanford.smi.protege.ui.ProjectManager.getCurrentProjectToolBar() Use #getCurrentProjectSystemToolBar()
edu.stanford.smi.protege.model.DefaultFrame.getDefiningProjectURI()
edu.stanford.smi.protege.model.DefaultCls.getDirectBrowserSlot() Use #getDirectBrowserSlotPattern
edu.stanford.smi.protege.model.Cls.getDirectBrowserSlot()
edu.stanford.smi.protege.model.Project.getDirectBrowserSlot(Cls)
edu.stanford.smi.protege.model.Project.getDirectIncludedProjects() Use #getDirectIncludedProjectURIs()
edu.stanford.smi.protege.model.KnowledgeBase.getEventsEnabled() Use #getGenerateEventsEnabled(boolean)
edu.stanford.smi.protege.model.DefaultKnowledgeBase.getEventsEnabled() Use #getGenerateEventsEnabled(boolean)
edu.stanford.smi.protege.model.DefaultCls.getInheritedBrowserSlot() Use #getInheritedBrowserSlotPattern
edu.stanford.smi.protege.model.Cls.getInheritedBrowserSlot()
edu.stanford.smi.protege.model.Project.getInheritedBrowserSlot(Cls) Use `Project.getInheritedBrowserSlotPattern(Cls)`
edu.stanford.smi.protege.model.DefaultKnowledgeBase.getInstances(Cls)
edu.stanford.smi.protege.storage.clips.SimpleCharStream.getLine()
edu.stanford.smi.protege.server.Server.getMetaProject() In ProtegeJobs use getMetaProjectInstance
edu.stanford.smi.protege.server.Server.getNameSlot() In ProtegeJobs use getMetaProjectInstance
edu.stanford.smi.protege.model.DefaultKnowledgeBase.getNextFrameNumber() No longer implemented
edu.stanford.smi.protege.model.DefaultKnowledgeBase.getOwnSlotAndSubslotValues(Frame, Slot) use getOwnSlotValues
edu.stanford.smi.protege.model.DefaultKnowledgeBase.getOwnSlotFacets(Frame, Slot) renamed to #getOwnFacets
edu.stanford.smi.protege.model.DefaultKnowledgeBase.getOwnSlotFacetValues(Frame, Slot, Facet) renamed to #getOwnFacetValues
edu.stanford.smi.protege.plugin.PluginUtilities.getPluginsDirectory() use class loader instead.
edu.stanford.smi.protege.server.Server.getProjectCls() In ProtegeJobs use getMetaProjectInstance
edu.stanford.smi.protege.model.Project.getProjectDirectoryFile() Use #getProjectDirectoryURI()
edu.stanford.smi.protege.model.Project.getProjectFile() Use #getProjectURI()
edu.stanford.smi.protege.model.Project.getProjectFilePath() Use #getProjectURI()
edu.stanford.smi.protege.model.DefaultKnowledgeBase.getSlotValueLastModificationTimestamp(Frame, Slot, boolean) this functionality is no longer available
edu.stanford.smi.protege.model.DefaultKnowledgeBase.getSlotValueLastModifier(Frame, Slot, boolean) this functionality is no longer available
edu.stanford.smi.protege.ui.ProjectView.getTab(String) Use #getTabByClassName(String)
edu.stanford.smi.protege.ui.ProjectView.getTabbedPane() returns null. Use the other methods on this class to manipulate views.
edu.stanford.smi.protege.model.Slot.getTemplateSlotClses() Use #getDirectDomain()
edu.stanford.smi.protege.model.DefaultSlot.getTemplateSlotClses()
edu.stanford.smi.protege.model.DefaultKnowledgeBase.getValueChecking() Use #getFacetCheckingEnabled
edu.stanford.smi.protege.model.Frame.isValid() Use #isDeleted()
edu.stanford.smi.protege.model.DefaultFrame.isValid()
edu.stanford.smi.protege.event.FrameAdapter.nameChanged(FrameEvent) Override frameReplaced instead.
edu.stanford.smi.protege.ui.DisplayUtilities.pickCls(Component, Collection) Use #pickCls(Component, KnowledgeBase, Collection)
edu.stanford.smi.protege.ui.DisplayUtilities.pickCls(Component, Collection, String) Use #pickCls(Component, KnowledgeBase, Collection, String)
edu.stanford.smi.protege.ui.DisplayUtilities.pickClses(Component, Collection) Use #pickClses(Component, KnowledgeBase, Collection)
edu.stanford.smi.protege.ui.DisplayUtilities.pickConcreteCls(Component, Collection) Use #pickConcreteCls(Component, KnowledgeBase kb, Collection)
edu.stanford.smi.protege.ui.DisplayUtilities.pickConcreteCls(Component, Collection, String) Use #pickConcreteCls(Component, KnowledgeBase kb, Collection, String)
edu.stanford.smi.protege.ui.DisplayUtilities.pickInstances(Component, Collection) Use #pickInstance(Component, KnowledgeBase, Collection)
edu.stanford.smi.protege.model.DefaultKnowledgeBase.removeOwnSlotValue(Frame, Slot, Object) use #setDirectOwnSlotValues
edu.stanford.smi.protege.model.DefaultKnowledgeBase.removeTemplateFacetOverrides(Cls, Slot) renamed to #removeDirectTemplateFacetOverrides
edu.stanford.smi.protege.ui.InstanceDisplay.reshape(int, int, int, int)
edu.stanford.smi.protege.widget.AbstractSlotWidget.reshape(int, int, int, int)
edu.stanford.smi.protege.model.KnowledgeBase.setAutoUpdateFacetValues(boolean) Use setModificationRecordUpdatingEnabled
edu.stanford.smi.protege.model.DefaultKnowledgeBase.setAutoUpdateFacetValues(boolean) Use setModificationRecordUpdatingEnabled
edu.stanford.smi.protege.model.DefaultKnowledgeBase.setDirectBrowserSlot(Cls, Slot)
edu.stanford.smi.protege.model.DefaultCls.setDirectBrowserSlot(Slot)
edu.stanford.smi.protege.model.KnowledgeBase.setEventsEnabled(boolean) Use #setGenerateEventsEnabled(boolean)
edu.stanford.smi.protege.model.DefaultKnowledgeBase.setEventsEnabled(boolean) Use #setGenerateEventsEnabled(boolean)
edu.stanford.smi.protege.model.DefaultKnowledgeBase.setNextFrameNumber(int) This functionality is no longer available
edu.stanford.smi.protege.model.DefaultKnowledgeBase.setOwnSlotValue(Frame, Slot, Object) renamed to #setDirectOwnSlotValue
edu.stanford.smi.protege.model.DefaultKnowledgeBase.setOwnSlotValues(Frame, Slot, Collection) renamed to setDirectOwnSlotValues
edu.stanford.smi.protege.ui.DirectInstancesList.setShowDisplaySlotPanel(boolean)
edu.stanford.smi.protege.model.DefaultKnowledgeBase.setTemplateFacetValue(Cls, Slot, Facet, Object) renamed to #setDirectTemplateFacetValue
edu.stanford.smi.protege.model.DefaultKnowledgeBase.setTemplateFacetValues(Cls, Slot, Facet, Collection) renamed to #setDirectTemplateFacetValues
edu.stanford.smi.protege.model.DefaultKnowledgeBase.setTemplateSlotValues(Cls, Slot, Collection) renamed to #setDirectTemplateSlotValues
edu.stanford.smi.protege.model.DefaultKnowledgeBase.setValueChecking(boolean) Use #setFacetCheckingEnabled(boolean)
edu.stanford.smi.protege.util.Log.stack(String, Object, String) Use getLogger().info();
edu.stanford.smi.protege.util.Log.stack(String, Object, String, Object) Use getLogger().info();
edu.stanford.smi.protege.util.Log.stack(String, Object, String, Object, Object) Use getLogger().info();
edu.stanford.smi.protege.util.Log.stack(String, Object, String, Object, Object, Object) Use getLogger().info();
edu.stanford.smi.protege.util.Log.stack(String, Object, String, Object, Object, Object, Object) Use getLogger().info();
edu.stanford.smi.protege.util.Log.trace(String, Object, String) Use getLogger().info();
edu.stanford.smi.protege.util.Log.trace(String, Object, String, Object) Use getLogger().info();
edu.stanford.smi.protege.util.Log.trace(String, Object, String, Object, Object) Use getLogger().info();
edu.stanford.smi.protege.util.Log.trace(String, Object, String, Object, Object, Object) Use getLogger().info();
edu.stanford.smi.protege.util.Log.trace(String, Object, String, Object, Object, Object, Object) Use getLogger().info();
edu.stanford.smi.protege.util.Log.trace(String, Object, String, Object, Object, Object, Object, Object) Use getLogger().info();
edu.stanford.smi.protege.util.ProjectChooser.useCreateProjectFromFilePlugin(Class, String, String) Use: useCreateProjectFromFilePlugin(Class pluginClass, String suffix, String fileName, Collection errors)
edu.stanford.smi.protege.util.Log.warning(String, Object, String) Use getLogger().warning();
edu.stanford.smi.protege.util.Log.warning(String, Object, String, Object) Use getLogger().warning();
edu.stanford.smi.protege.util.Log.warning(String, Object, String, Object, Object) Use getLogger().warning();
edu.stanford.smi.protege.util.Log.warning(String, Object, String, Object, Object, Object) Use getLogger().warning();
edu.stanford.smi.protege.util.Log.warning(String, Object, String, Object, Object, Object, Object) Use getLogger().warning();

Deprecated Constructors
edu.stanford.smi.protege.action.DeleteInstancesAction(String, Selectable) Use ResourceKey version
edu.stanford.smi.protege.ui.ReferencersPanel(Project, Instance) Use constructor without Project argument

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