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## A

ABOUT - Static variable in interface edu.stanford.smi.protegex.owl.model.RDFNames.Slot
abs - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLConstants.BuiltIns
  Deprecated.
ABS - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.CoreBuiltIns
ABSOLUTE_FORMS_FILENAME - Static variable in class edu.stanford.smi.protegex.owl.ui.forms.ProtegeFormsNames
ABSOLUTE_FORMS_ONTOLOGY - Static variable in class edu.stanford.smi.protegex.owl.ui.forms.ProtegeFormsNames
AbsoluteFormsGenerator - Class in edu.stanford.smi.protegex.owl.ui.forms
  A utility class that creates a Jena Model in the absolute forms ontology from the forms represented in a Protege project.
AbsoluteFormsGenerator(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.ui.forms.AbsoluteFormsGenerator
AbsoluteFormsLoader - Class in edu.stanford.smi.protegex.owl.ui.forms
  An object capable of loading forms files into a Protege Project.
AbsoluteFormsLoader(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.ui.forms.AbsoluteFormsLoader
AbsoluteLayoutData - Static variable in class edu.stanford.smi.protegex.owl.ui.forms.AbsoluteLayoutNames
AbsoluteLayoutNames - Class in edu.stanford.smi.protegex.owl.ui.forms
  Vocabulary definitions from file:/C:/protege-owl/owl/schemagen-temp.owl
AbsoluteLayoutNames() - Constructor for class edu.stanford.smi.protegex.owl.ui.forms.AbsoluteLayoutNames
ABSTRACT - Static variable in class edu.stanford.smi.protegex.owl.model.ProtegeNames
ABSTRACT - Static variable in interface edu.stanford.smi.protegex.owl.model.ProtegeNames.Slot
ABSTRACT_MODE - Static variable in class edu.stanford.smi.protegex.owl.javacode.ProjectBasedJavaCodeGeneratorOptions
AbstractClassDefinitionWidget - Class in edu.stanford.smi.protegex.owl.ui.cls
  The base class of the two ClsDefinitionWidgets.
AbstractClassDefinitionWidget() - Constructor for class edu.stanford.smi.protegex.owl.ui.cls.AbstractClassDefinitionWidget
AbstractClassDefinitionWidget.MySplitPane - Class in edu.stanford.smi.protegex.owl.ui.cls
AbstractClassDefinitionWidget.MySplitPane(int, Component, Component, double) - Constructor for class edu.stanford.smi.protegex.owl.ui.cls.AbstractClassDefinitionWidget.MySplitPane
AbstractCodeGeneratorIndividual - Class in edu.stanford.smi.protegex.owl.javacode
AbstractCodeGeneratorIndividual() - Constructor for class edu.stanford.smi.protegex.owl.javacode.AbstractCodeGeneratorIndividual
AbstractCodeGeneratorIndividual(KnowledgeBase, FrameID) - Constructor for class edu.stanford.smi.protegex.owl.javacode.AbstractCodeGeneratorIndividual
AbstractConditionsWidget - Class in edu.stanford.smi.protegex.owl.ui.conditions
  A SlotWidget used for describing logical class characteristics, i.e.
AbstractConditionsWidget() - Constructor for class edu.stanford.smi.protegex.owl.ui.conditions.AbstractConditionsWidget
AbstractImportEntry - Class in edu.stanford.smi.protegex.owl.ui.metadatatab.imports.wizard
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Dec 7, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
AbstractImportEntry() - Constructor for class edu.stanford.smi.protegex.owl.ui.metadatatab.imports.wizard.AbstractImportEntry
AbstractImportStartWizardPage - Class in edu.stanford.smi.protegex.owl.ui.metadatatab.imports.wizard
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Dec 7, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
AbstractImportStartWizardPage(String, ImportWizard) - Constructor for class edu.stanford.smi.protegex.owl.ui.metadatatab.imports.wizard.AbstractImportStartWizardPage
AbstractImportWizardPage - Class in edu.stanford.smi.protegex.owl.ui.metadatatab.imports.wizard
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Dec 7, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
AbstractImportWizardPage(String, ImportWizard) - Constructor for class edu.stanford.smi.protegex.owl.ui.metadatatab.imports.wizard.AbstractImportWizardPage
AbstractJenaFileExportPlugin - Class in edu.stanford.smi.protegex.owl.jena.export
AbstractJenaFileExportPlugin(String) - Constructor for class edu.stanford.smi.protegex.owl.jena.export.AbstractJenaFileExportPlugin
AbstractLocalRepository - Class in edu.stanford.smi.protegex.owl.repository.impl
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Sep 21, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
AbstractLocalRepository(File, boolean) - Constructor for class edu.stanford.smi.protegex.owl.repository.impl.AbstractLocalRepository
AbstractMatrixColumn - Class in edu.stanford.smi.protegex.owl.ui.matrix
AbstractMatrixColumn(String, int) - Constructor for class edu.stanford.smi.protegex.owl.ui.matrix.AbstractMatrixColumn
AbstractModalDialogFactory - Class in edu.stanford.smi.protegex.owl.ui.dialogs
AbstractModalDialogFactory() - Constructor for class edu.stanford.smi.protegex.owl.ui.dialogs.AbstractModalDialogFactory
AbstractNamedObjectCreationSuggestion - Class in edu.stanford.smi.protegex.owl.ui.clsdesc.manchester
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Sep 7, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
AbstractNamedObjectCreationSuggestion(OWLModel, String) - Constructor for class edu.stanford.smi.protegex.owl.ui.clsdesc.manchester.AbstractNamedObjectCreationSuggestion
AbstractNamespaceManager - Class in edu.stanford.smi.protegex.owl.model.impl
AbstractNamespaceManager() - Constructor for class edu.stanford.smi.protegex.owl.model.impl.AbstractNamespaceManager
AbstractOWLAnonymousClass - Class in edu.stanford.smi.protegex.owl.model.impl
  A base implementation of OWLAnonymousClass.
AbstractOWLAnonymousClass(KnowledgeBase, FrameID) - Constructor for class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLAnonymousClass
AbstractOWLAnonymousClass() - Constructor for class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLAnonymousClass
AbstractOWLCardinalityBase - Class in edu.stanford.smi.protegex.owl.model.impl
  The base class of MaxCardi and OWLMinCardinality.
AbstractOWLCardinalityBase(KnowledgeBase, FrameID, char) - Constructor for class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLCardinalityBase
AbstractOWLClassDisplay - Class in edu.stanford.smi.protegex.owl.model.classdisplay
  A basic implementation of OWLClassRenderer which uses infix notation based on the keys defined by the various methods in the implementing classes.
AbstractOWLClassDisplay() - Constructor for class edu.stanford.smi.protegex.owl.model.classdisplay.AbstractOWLClassDisplay
AbstractOwlDatabaseCreator - Class in edu.stanford.smi.protegex.owl.database.creator
  This is the common part of all the owl database project creators.
AbstractOwlDatabaseCreator(OWLDatabaseKnowledgeBaseFactory) - Constructor for class edu.stanford.smi.protegex.owl.database.creator.AbstractOwlDatabaseCreator
AbstractOWLFilesWizardPage - Class in edu.stanford.smi.protegex.owl.ui.jena
AbstractOWLFilesWizardPage(Wizard, OWLFilesPlugin, String) - Constructor for class edu.stanford.smi.protegex.owl.ui.jena.AbstractOWLFilesWizardPage
AbstractOWLLogicalClass - Class in edu.stanford.smi.protegex.owl.model.impl
  A basic implementation of OWLLogicalClass.
AbstractOWLLogicalClass(KnowledgeBase, FrameID) - Constructor for class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLLogicalClass
AbstractOWLModel - Class in edu.stanford.smi.protegex.owl.model.impl
AbstractOWLModel(KnowledgeBaseFactory) - Constructor for class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
AbstractOWLModelAction - Class in edu.stanford.smi.protegex.owl.ui.actions
  A base class for OWLModelActions.
AbstractOWLModelAction() - Constructor for class edu.stanford.smi.protegex.owl.ui.actions.AbstractOWLModelAction
AbstractOWLModelTestAction - Class in edu.stanford.smi.protegex.owl.ui.testing
AbstractOWLModelTestAction() - Constructor for class edu.stanford.smi.protegex.owl.ui.testing.AbstractOWLModelTestAction
AbstractOWLNAryLogicalClass - Class in edu.stanford.smi.protegex.owl.model.impl
  The base class of DefaultOWLIntersectionClass and DefaultOWLUnionClass.
AbstractOWLNAryLogicalClass(KnowledgeBase, FrameID) - Constructor for class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLNAryLogicalClass
AbstractOWLNAryLogicalClass() - Constructor for class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLNAryLogicalClass
AbstractOWLProject - Class in edu.stanford.smi.protegex.owl.model.project
AbstractOWLProject() - Constructor for class edu.stanford.smi.protegex.owl.model.project.AbstractOWLProject
AbstractOwlProjectCreator - Class in edu.stanford.smi.protegex.owl.model.factory
AbstractOwlProjectCreator(OWLKnowledgeBaseFactory) - Constructor for class edu.stanford.smi.protegex.owl.model.factory.AbstractOwlProjectCreator
AbstractOWLProperty - Class in edu.stanford.smi.protegex.owl.model.impl
  The default implementation of the OWLProperty interface.
AbstractOWLProperty(KnowledgeBase, FrameID) - Constructor for class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLProperty
AbstractOWLQuantifierRestriction - Class in edu.stanford.smi.protegex.owl.model.impl
  The common base class of DefaultOWLAllValuesFrom and DefaultOWLSomeValuesFrom.
AbstractOWLRestriction - Class in edu.stanford.smi.protegex.owl.model.impl
  A basic implementation of the OWLRestriction interface.
AbstractOWLRestriction(KnowledgeBase, FrameID) - Constructor for class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLRestriction
AbstractOWLTableAction - Class in edu.stanford.smi.protegex.owl.ui.owltable
  A simple base implementation of OWLTableAction for simple subclassing.
AbstractOWLTableAction(String, Icon) - Constructor for class edu.stanford.smi.protegex.owl.ui.owltable.AbstractOWLTableAction
AbstractOWLTableModel - Class in edu.stanford.smi.protegex.owl.ui.owltable
  An AbstractTableModel that represents superclasses/equivalent classes with one row.
AbstractOWLTableModel(int) - Constructor for class edu.stanford.smi.protegex.owl.ui.owltable.AbstractOWLTableModel
AbstractOWLTest - Class in edu.stanford.smi.protegex.owl.testing
  A base implementation of OWLTest.
AbstractOWLTest() - Constructor for class edu.stanford.smi.protegex.owl.testing.AbstractOWLTest
AbstractOWLTest(String, String) - Constructor for class edu.stanford.smi.protegex.owl.testing.AbstractOWLTest
AbstractOWLTest(String, String, String) - Constructor for class edu.stanford.smi.protegex.owl.testing.AbstractOWLTest
AbstractOWLTestAction - Class in edu.stanford.smi.protegex.owl.ui.testing
AbstractOWLTestAction() - Constructor for class edu.stanford.smi.protegex.owl.ui.testing.AbstractOWLTestAction
AbstractOWLTestAction(OWLModel, OWLTestManager, String, Icon) - Constructor for class edu.stanford.smi.protegex.owl.ui.testing.AbstractOWLTestAction
AbstractPropertyTypesWidget - Class in edu.stanford.smi.protegex.owl.ui.properties.types
  A SlotWidget to edit additional RDF types of an RDFProperty (e.g., FunctionalProperty, TransitiveProperty).
AbstractPropertyTypesWidget() - Constructor for class edu.stanford.smi.protegex.owl.ui.properties.types.AbstractPropertyTypesWidget
AbstractPropertyValuesComponent - Class in edu.stanford.smi.protegex.owl.ui.components
AbstractPropertyValuesComponent(RDFProperty) - Constructor for class edu.stanford.smi.protegex.owl.ui.components.AbstractPropertyValuesComponent
AbstractPropertyValuesComponent(RDFProperty, String) - Constructor for class edu.stanford.smi.protegex.owl.ui.components.AbstractPropertyValuesComponent
AbstractPropertyValuesComponent(RDFProperty, String, boolean) - Constructor for class edu.stanford.smi.protegex.owl.ui.components.AbstractPropertyValuesComponent
AbstractPropertyValuesWidget - Class in edu.stanford.smi.protegex.owl.ui.widget
  A container for PropertyValuesComponents, so that they can be placed on a Protege FormWidget.
AbstractPropertyValuesWidget() - Constructor for class edu.stanford.smi.protegex.owl.ui.widget.AbstractPropertyValuesWidget
AbstractPropertyWidget - Class in edu.stanford.smi.protegex.owl.ui.widget
AbstractPropertyWidget() - Constructor for class edu.stanford.smi.protegex.owl.ui.widget.AbstractPropertyWidget
AbstractProtegeReasoner - Class in edu.stanford.smi.protegex.owl.inference.reasoner
AbstractProtegeReasoner() - Constructor for class edu.stanford.smi.protegex.owl.inference.reasoner.AbstractProtegeReasoner
AbstractRDFSClass - Class in edu.stanford.smi.protegex.owl.model.impl
  A basic implementation of the RDFSClass interface that provides support for disjoint classes.
AbstractRDFSClass(KnowledgeBase, FrameID) - Constructor for class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
AbstractReasonerTask - Class in edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Aug 13, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm

  A partial implementation of `ReasonerTask` that implements several useful methods to set the task state and simultaneously notify listeners of state changes.
AbstractReasonerTask(ProtegeOWLReasoner) - Constructor for class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.AbstractReasonerTask
AbstractReasonerTask - Class in edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Aug 13, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm

  A partial implementation of `ReasonerTask` that implements several useful methods to set the task state and simultaneously notify listeners of state changes.
AbstractReasonerTask(ProtegeReasoner) - Constructor for class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.AbstractReasonerTask
AbstractRepositoriesPanel - Class in edu.stanford.smi.protegex.owl.ui.repository
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Sep 18, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
AbstractRepositoriesPanel(OWLModel, RepositoryManager) - Constructor for class edu.stanford.smi.protegex.owl.ui.repository.AbstractRepositoriesPanel
AbstractRepositoryWizardPage - Class in edu.stanford.smi.protegex.owl.ui.repository.wizard
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Dec 8, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
AbstractRepositoryWizardPage(String, RepositoryWizard) - Constructor for class edu.stanford.smi.protegex.owl.ui.repository.wizard.AbstractRepositoryWizardPage
AbstractRestrictionUpdater - Class in edu.stanford.smi.protegex.owl.model.framestore.updater
AbstractRestrictionUpdater(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.model.framestore.updater.AbstractRestrictionUpdater
AbstractSelectionDialogFactory - Class in edu.stanford.smi.protegex.owl.ui.dialogs
AbstractSelectionDialogFactory() - Constructor for class edu.stanford.smi.protegex.owl.ui.dialogs.AbstractSelectionDialogFactory
AbstractSettingsMap - Class in edu.stanford.smi.protegex.owl.model.project
AbstractSettingsMap() - Constructor for class edu.stanford.smi.protegex.owl.model.project.AbstractSettingsMap
AbstractSingleConceptWithConceptCollectionResultTask - Class in edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Aug 17, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm

  An abstract base class for task that take a single concept as a parameter, and return a collection of concepts as a result.
AbstractSingleConceptWithConceptCollectionResultTask(String, OWLClass, ProtegeOWLReasoner) - Constructor for class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.AbstractSingleConceptWithConceptCollectionResultTask
AbstractSingleConceptWithConceptCollectionResultTask - Class in edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Aug 17, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm

  An abstract base class for task that take a single concept as a parameter, and return a collection of concepts as a result.
AbstractSingleConceptWithConceptCollectionResultTask(String, OWLClass, ProtegeReasoner) - Constructor for class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.AbstractSingleConceptWithConceptCollectionResultTask
AbstractSingleLiteralComponent - Class in edu.stanford.smi.protegex.owl.ui.components.singleliteral
AbstractSingleLiteralComponent(RDFProperty) - Constructor for class edu.stanford.smi.protegex.owl.ui.components.singleliteral.AbstractSingleLiteralComponent
AbstractSingleLiteralComponent(RDFProperty, String) - Constructor for class edu.stanford.smi.protegex.owl.ui.components.singleliteral.AbstractSingleLiteralComponent
AbstractSingleLiteralComponent(RDFProperty, String, boolean) - Constructor for class edu.stanford.smi.protegex.owl.ui.components.singleliteral.AbstractSingleLiteralComponent
AbstractStatefulTripleProcessor - Class in edu.stanford.smi.protegex.owl.jena.parser
AbstractStatefulTripleProcessor(TripleProcessor) - Constructor for class edu.stanford.smi.protegex.owl.jena.parser.AbstractStatefulTripleProcessor
AbstractStreamBasedRepositoryImpl - Class in edu.stanford.smi.protegex.owl.repository.impl
AbstractStreamBasedRepositoryImpl() - Constructor for class edu.stanford.smi.protegex.owl.repository.impl.AbstractStreamBasedRepositoryImpl
AbstractSWRLIndividual - Class in edu.stanford.smi.protegex.owl.swrl.model.impl
AbstractSWRLIndividual(KnowledgeBase, FrameID) - Constructor for class edu.stanford.smi.protegex.owl.swrl.model.impl.AbstractSWRLIndividual
AbstractSWRLIndividual() - Constructor for class edu.stanford.smi.protegex.owl.swrl.model.impl.AbstractSWRLIndividual
AbstractSWRLIndividualsAtom - Class in edu.stanford.smi.protegex.owl.swrl.model.impl
AbstractSWRLIndividualsAtom(KnowledgeBase, FrameID) - Constructor for class edu.stanford.smi.protegex.owl.swrl.model.impl.AbstractSWRLIndividualsAtom
AbstractSWRLIndividualsAtom() - Constructor for class edu.stanford.smi.protegex.owl.swrl.model.impl.AbstractSWRLIndividualsAtom
AbstractTabWidget - Class in edu.stanford.smi.protegex.owl.ui.widget
  A convenience wrapper of the standard AbstractTabWidget class to make it easier accessible for OWL programmers.
AbstractTabWidget() - Constructor for class edu.stanford.smi.protegex.owl.ui.widget.AbstractTabWidget
AbstractTask - Class in edu.stanford.smi.protegex.owl.model
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Sep 12, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
AbstractTask(String, boolean, TaskManager) - Constructor for class edu.stanford.smi.protegex.owl.model.AbstractTask
AbstractTask(String, boolean, TaskManager, int, int) - Constructor for class edu.stanford.smi.protegex.owl.model.AbstractTask
AbstractTripleAction - Class in edu.stanford.smi.protegex.owl.ui.actions.triple
AbstractTripleAction(String) - Constructor for class edu.stanford.smi.protegex.owl.ui.actions.triple.AbstractTripleAction
AbstractTripleAction(String, String, Class) - Constructor for class edu.stanford.smi.protegex.owl.ui.actions.triple.AbstractTripleAction
AbstractTriplesComponent - Class in edu.stanford.smi.protegex.owl.ui.components.triples
  A PropertyWidget to edit the values of properties in a table.
AbstractTriplesComponent(RDFProperty) - Constructor for class edu.stanford.smi.protegex.owl.ui.components.triples.AbstractTriplesComponent
AbstractTriplesComponent(RDFProperty, String, Icon) - Constructor for class edu.stanford.smi.protegex.owl.ui.components.triples.AbstractTriplesComponent
AbstractTriplesComponent(RDFProperty, String, Icon, boolean) - Constructor for class edu.stanford.smi.protegex.owl.ui.components.triples.AbstractTriplesComponent
accept(OWLModelVisitor) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLAllDifferent
accept(OWLModelVisitor) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLAllValuesFrom
accept(OWLModelVisitor) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLCardinality
accept(OWLModelVisitor) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLComplementClass
accept(OWLModelVisitor) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLDataRange
accept(OWLModelVisitor) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLDatatypeProperty
accept(OWLModelVisitor) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLEnumeratedClass
accept(OWLModelVisitor) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLHasValue
accept(OWLModelVisitor) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLIndividual
accept(OWLModelVisitor) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLIntersectionClass
accept(OWLModelVisitor) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLMaxCardinality
accept(OWLModelVisitor) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLMinCardinality
accept(OWLModelVisitor) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLNamedClass
accept(OWLModelVisitor) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLObjectProperty
accept(OWLModelVisitor) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLOntology
accept(OWLModelVisitor) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLSomeValuesFrom
accept(OWLModelVisitor) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLUnionClass
accept(OWLModelVisitor) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFExternalResource
accept(OWLModelVisitor) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFIndividual
accept(OWLModelVisitor) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFList
accept(OWLModelVisitor) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
accept(OWLModelVisitor) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFSDatatype
accept(OWLModelVisitor) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFSLiteral
accept(OWLModelVisitor) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFSNamedClass
accept(OWLModelVisitor) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFUntypedResource
accept(OWLModelVisitor) - Method in interface edu.stanford.smi.protegex.owl.model.visitor.Visitable
  This method is provided to be used with the `OWLModelVisitor`, which is part of the visitor design pattern.
accept(OWLModelVisitor) - Method in class edu.stanford.smi.protegex.owl.swrl.model.impl.AbstractSWRLIndividual
accept(OWLModelVisitor) - Method in class edu.stanford.smi.protegex.owl.swrl.model.impl.DefaultSWRLAtomList
ACCEPT - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
acceptSelectedFrame() - Method in class edu.stanford.smi.protegex.owl.swrl.ui.code.SWRLTextArea
acceptSelectedFrame() - Method in class edu.stanford.smi.protegex.owl.ui.code.SymbolTextArea
aClass - Variable in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTableItem
ACTION_GROUP - Static variable in interface edu.stanford.smi.protegex.owl.inference.ui.action.ActionConstants
ACTION_GROUP_DIRECT_REASONER - Static variable in interface edu.stanford.smi.protegex.owl.inference.ui.action.ActionConstants
ActionConstants - Interface in edu.stanford.smi.protegex.owl.inference.ui.action
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Sep 8, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protegex.owl.inference.ui.action.CheckSingleConceptConsistencyAction
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protegex.owl.inference.ui.action.ComputeIndividualsBelongingToClassAction
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protegex.owl.inference.ui.action.ComputeSingleIndividualTypesAction
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protegex.owl.inference.ui.action.GetInferredSubClassesAction
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protegex.owl.inference.ui.action.GetInferredSuperClassesAction
  Invoked when an action occurs.
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protegex.owl.inference.ui.action.GetSingleIndividualPropertyValuesAction
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protegex.owl.javacode.JavaCodeGeneratorResourceAction
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protegex.owl.swrl.ui.actions.EditRuleAction
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protegex.owl.swrl.ui.actions.FindRulesAction
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protegex.owl.swrl.ui.actions.ViewPluginAction
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protegex.owl.swrl.ui.table.CloneRuleAction
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protegex.owl.swrl.ui.table.CreateRuleAction
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protegex.owl.swrl.ui.table.DeleteRuleAction
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protegex.owl.swrl.ui.table.ViewRuleAction
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protegex.owl.ui.actions.AddRDFTypeAction
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protegex.owl.ui.actions.CollapseTreeAction
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protegex.owl.ui.actions.ConvertIndividualToClassAction
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protegex.owl.ui.actions.CopyPropertyValueAction
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protegex.owl.ui.actions.DeleteAllPropertyValuesAction
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protegex.owl.ui.actions.DeleteMatchingPropertyValuesAction
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protegex.owl.ui.actions.DeletePropertyAction
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protegex.owl.ui.actions.ExpandTreeAction
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protegex.owl.ui.actions.RemoveRDFTypeAction
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protegex.owl.ui.actions.SetSubclassesDisjointFalseAction
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protegex.owl.ui.actions.SetSubclassesDisjointTrueAction
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protegex.owl.ui.actions.ShowAboutProtegeOWLAction
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protegex.owl.ui.actions.triple.TripleActionSwingAction
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protegex.owl.ui.classform.component.property.ChangeClosureAxiomButton
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protegex.owl.ui.classform.component.property.DeleteRowAction
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protegex.owl.ui.cls.AddSubclassAction
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protegex.owl.ui.cls.ChangeMetaclassAction
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protegex.owl.ui.cls.ChangeMetaclassOfSubclassesAction
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protegex.owl.ui.cls.ConvertToDefinedClassAction
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protegex.owl.ui.cls.ConvertToPrimitiveClassAction
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protegex.owl.ui.cls.CreateClassUsingMetaclassAction
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protegex.owl.ui.cls.CreateCloneAction
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protegex.owl.ui.cls.CreateRDFListResourceAction
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protegex.owl.ui.cls.CreateSiblingClassAction
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protegex.owl.ui.cls.CreateSubclassAction
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protegex.owl.ui.cls.DeleteClassAction
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protegex.owl.ui.cls.ExtractOntologyAction
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protegex.owl.ui.cls.ExtractTaxonomyAction
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protegex.owl.ui.cls.HideClassAction
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protegex.owl.ui.cls.SortSubclassesAction
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protegex.owl.ui.cls.SortSubclassesTreeAction
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protegex.owl.ui.cls.ToggleSuperclassExplorerAction
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protegex.owl.ui.cls.UnhideClassAction
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protegex.owl.ui.clsproperties.CreatePropertyAction
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protegex.owl.ui.components.annotations.AddTodoAction
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protegex.owl.ui.components.triples.DeleteTripleAction
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protegex.owl.ui.components.triples.DeleteValueAction
  Deprecated.
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protegex.owl.ui.conditions.AddClosureAxiomAction
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protegex.owl.ui.conditions.AddCoveringAxiomAction
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protegex.owl.ui.explorer.ExplorerAction
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protegex.owl.ui.importstree.DownloadImportsAction
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protegex.owl.ui.matrix.cls.ClassMatrixAction
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protegex.owl.ui.matrix.cls.ExistentialMatrixAction
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protegex.owl.ui.matrix.cls.SubclassesMatrixAction
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protegex.owl.ui.matrix.property.PropertyMatrixAction
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protegex.owl.ui.matrix.property.SubpropertiesMatrixAction
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protegex.owl.ui.menu.OWLModelActionAction
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protegex.owl.ui.menu.SyntaxHelpAction
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.imports.wizard.ImportTypePage
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protegex.owl.ui.owltable.DeleteRowAction
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protegex.owl.ui.projectview.ConfigureTabsAction
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protegex.owl.ui.properties.actions.ChangePropertyTypeAction
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protegex.owl.ui.properties.actions.ConvertToDatatypePropertyAction
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protegex.owl.ui.properties.actions.ConvertToObjectPropertyAction
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protegex.owl.ui.properties.actions.CreateSubpropertyAction
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protegex.owl.ui.properties.range.ExInclusiveToggleAction
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protegex.owl.ui.refactoring.RenameAcrossFilesAction
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protegex.owl.ui.refactoring.SetDeprecatedFalseAction
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protegex.owl.ui.refactoring.SetDeprecatedTrueAction
actionPerformed(Repository, AbstractRepositoriesPanel, OWLModel) - Method in interface edu.stanford.smi.protegex.owl.ui.repository.action.RepositoryAction
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protegex.owl.ui.resourcedisplay.CreatePropertyForTypeAction
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protegex.owl.ui.resourcedisplay.EditTypeAction
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protegex.owl.ui.resourcedisplay.EditTypeFormAction
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protegex.owl.ui.resourceselection.ResourceSelectionAction
  Shows the frame picker dialog from `pickFrame` and then calls `resourceSelected` on the selected Frame.
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protegex.owl.ui.search.FindUsageAction
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protegex.owl.ui.search.SearchNamedClassAction
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protegex.owl.ui.testing.AbstractOWLTestAction
actionPerformed(ActionEvent) - Method in class edu.stanford.smi.protegex.owl.ui.triplestore.TripleStoreSelectionAction
activate(AbstractTriplesComponent) - Method in class edu.stanford.smi.protegex.owl.ui.widget.HeaderWidget
activateAnnotationsComponent() - Method in class edu.stanford.smi.protegex.owl.ui.widget.HeaderWidget
activateButton(JButton) - Method in class edu.stanford.smi.protegex.owl.ui.triplestore.TripleStoreSelectionAction
activateComboBox(JButton) - Method in class edu.stanford.smi.protegex.owl.ui.resourceselection.ResourceSelectionAction
  Activates the right mouse click on a given JButton.
activated - Static variable in class edu.stanford.smi.protegex.owl.ui.resourceselection.ResourceSelectionAction
  A ugly global flag that can be used to deactivate the right-click popup when working with huge ontologies (such as in database backend) for performance reasons.
activateTriplesComponent() - Method in class edu.stanford.smi.protegex.owl.ui.widget.HeaderWidget
ActiveOntologyFrameStoreHandler - Class in edu.stanford.smi.protegex.owl.ui.importstree.server
ActiveOntologyFrameStoreHandler(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.ui.importstree.server.ActiveOntologyFrameStoreHandler
add(String, Class<? extends RDFResource>, Class<? extends RDFResource>) - Static method in class edu.stanford.smi.protegex.owl.javacode.ProtegeJavaMapping
add(Triple) - Method in class edu.stanford.smi.protegex.owl.jena.graph.ProtegeGraph
add(Triple) - Method in class edu.stanford.smi.protegex.owl.model.triplestore.impl.TripleStoreImpl
add(RDFResource, RDFProperty, Object) - Method in class edu.stanford.smi.protegex.owl.model.triplestore.impl.TripleStoreImpl
add(Triple) - Method in interface edu.stanford.smi.protegex.owl.model.triplestore.TripleStore
add(RDFResource, RDFProperty, Object) - Method in interface edu.stanford.smi.protegex.owl.model.triplestore.TripleStore
ADD - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLConstants.BuiltIns
  Deprecated.
ADD - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.CoreBuiltIns
add(RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.navigation.NavigationHistoryManager
ADD_DATE_TIME_DURATION_TO_TIME - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLConstants.BuiltIns
  Deprecated.
ADD_DAY_TIME_DURATION_TO_DATE - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLConstants.BuiltIns
  Deprecated.
ADD_DAY_TIME_DURATION_TO_DATE - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.CoreBuiltIns
ADD_DAY_TIME_DURATION_TO_DATE_TIME - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLConstants.BuiltIns
  Deprecated.
ADD_DAY_TIME_DURATION_TO_DATETIME - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.CoreBuiltIns
ADD_DAY_TIME_DURATION_TO_TIME - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.CoreBuiltIns
ADD_DAY_TIME_DURATIONS - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLConstants.BuiltIns
  Deprecated.
ADD_DAY_TIME_DURATIONS - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.CoreBuiltIns
add_escapes(String) - Method in exception edu.stanford.smi.protegex.owl.model.classparser.compact.ParseException
  Used to convert raw characters to their escaped version when these raw version cannot be used as part of an ASCII string literal.
add_escapes(String) - Method in exception edu.stanford.smi.protegex.owl.model.classparser.dl.ParseException
  Used to convert raw characters to their escaped version when these raw version cannot be used as part of an ASCII string literal.
add_escapes(String) - Method in exception edu.stanford.smi.protegex.owl.model.classparser.manchester.ParseException
  Used to convert raw characters to their escaped version when these raw version cannot be used as part of an ASCII string literal.
ADD_OPTION - Static variable in class edu.stanford.smi.protegex.owl.ui.repository.UnresolvedImportUIHandler
ADD_OVERLAY - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
ADD_PROPERTY_TO_CLASS_FORM - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
ADD_YEAR_MONTH_DURATION_TO_DATE - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLConstants.BuiltIns
  Deprecated.
ADD_YEAR_MONTH_DURATION_TO_DATE - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.CoreBuiltIns
ADD_YEAR_MONTH_DURATION_TO_DATE_TIME - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLConstants.BuiltIns
  Deprecated.
ADD_YEAR_MONTH_DURATION_TO_DATETIME - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.CoreBuiltIns
ADD_YEAR_MONTH_DURATIONS - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLConstants.BuiltIns
  Deprecated.
ADD_YEAR_MONTH_DURATIONS - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.CoreBuiltIns
AddablePropertyValuesComponent - Class in edu.stanford.smi.protegex.owl.ui.components
AddablePropertyValuesComponent(RDFProperty) - Constructor for class edu.stanford.smi.protegex.owl.ui.components.AddablePropertyValuesComponent
AddablePropertyValuesComponent(RDFProperty, String) - Constructor for class edu.stanford.smi.protegex.owl.ui.components.AddablePropertyValuesComponent
AddablePropertyValuesComponent(RDFProperty, String, boolean) - Constructor for class edu.stanford.smi.protegex.owl.ui.components.AddablePropertyValuesComponent
addAction(String, String, String, JToolBar) - Method in class edu.stanford.smi.protegex.owl.ui.code.SymbolPanel
addActions(LabeledComponent, OWLModel, CreatePropertyAction.CallBack) - Static method in class edu.stanford.smi.protegex.owl.ui.clsproperties.CreatePropertyAction
addAllowed() - Method in class edu.stanford.smi.protegex.owl.jena.graph.ProtegeCapabilities
addAllowed(boolean) - Method in class edu.stanford.smi.protegex.owl.jena.graph.ProtegeCapabilities
addAllValidClasses() - Method in class edu.stanford.smi.protegex.owl.ui.explorer.filter.DefaultExplorerFilter
addAltEntryForOWLProfiles(OntModel) - Static method in class edu.stanford.smi.protegex.owl.ui.profiles.ProfilesManager
addAnnotationDataPropertyValue(OWLModel, String, String, String, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
addAnnotationDataPropertyValueWithLanguage(OWLModel, String, String, String, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
addAnnotationFlag(FrameRenderer, Cls) - Static method in class edu.stanford.smi.protegex.owl.ui.ResourceRenderer
addAnnotationObjectPropertyValue(OWLModel, String, String, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
addAnnotationPropertyValue(OWLModel, String, String, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
addAnnotationStringDataPropertyValue(OWLModel, String, String, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
addAnonymousClses(Collection, Collection) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
addBackwardCompatibleWith(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLOntology
addBackwardCompatibleWith(String) - Method in interface edu.stanford.smi.protegex.owl.model.OWLOntology
addBuiltInTypes() - Method in class edu.stanford.smi.protegex.owl.swrl.SWRLSystemFrames.SWRLSystemFramesAssertions
addButton(JToolBar, Action) - Method in class edu.stanford.smi.protegex.owl.ui.code.SymbolPanel
addButton(Action) - Method in class edu.stanford.smi.protegex.owl.ui.results.ResultsPanel
addButton(Action) - Method in class edu.stanford.smi.protegex.owl.ui.search.finder.ResourceFinder
addButtons(LabeledComponent) - Method in class edu.stanford.smi.protegex.owl.ui.components.annotations.AnnotationsComponent
addButtons(LabeledComponent) - Method in class edu.stanford.smi.protegex.owl.ui.components.triples.AbstractTriplesComponent
addButtons(LabeledComponent) - Method in class edu.stanford.smi.protegex.owl.ui.components.triples.TriplesComponent
addButtons(Action, LabeledComponent) - Method in class edu.stanford.smi.protegex.owl.ui.individuals.AssertedInstancesListPanel
addButtons(LabeledComponent, Action) - Method in class edu.stanford.smi.protegex.owl.ui.widget.InferredSuperClassesWidget
addChangeListener(ChangeListener) - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.OntologyURIPanel
addChar(char) - Method in class edu.stanford.smi.protegex.owl.ui.resourceselection.ResourceFilterListModel
addClassHierarchy() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames.OWLSystemFramesAssertions
addClassListener(ClassListener) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
addClassListener(ClassListener) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
addClassListener(ClassListener) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Adds a ClassListener to receive events about any class in this OWLModel.
addClassListener(ClassListener) - Method in interface edu.stanford.smi.protegex.owl.model.RDFSClass
  Adds a ClassListener to receive events about this RDFSClass.
AddClassToDomainAction - Class in edu.stanford.smi.protegex.owl.ui.properties.domain
AddClassToDomainAction(OWLDomainWidget) - Constructor for class edu.stanford.smi.protegex.owl.ui.properties.domain.AddClassToDomainAction
addClosureAxiom(OWLNamedClass, OWLExistentialRestriction) - Static method in class edu.stanford.smi.protegex.owl.model.util.ClosureAxiomFactory
AddClosureAxiomAction - Class in edu.stanford.smi.protegex.owl.ui.conditions
  A ResourceAction that adds a closure axiom to the class.
AddClosureAxiomAction() - Constructor for class edu.stanford.smi.protegex.owl.ui.conditions.AddClosureAxiomAction
addClsListener(ClsListener) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeCls
  Deprecated.
addClsListener(ClsListener) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
addClsListener(Cls, ClsListener) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
addColumn(MatrixColumn) - Method in class edu.stanford.smi.protegex.owl.ui.matrix.MatrixTable
addColumn(MatrixColumn) - Method in class edu.stanford.smi.protegex.owl.ui.matrix.MatrixTableModel
  Adds a new MatrixColumn programmatically.
addComment(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
addComment(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFIndividual
addComment(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
addComment(RDFResource, String) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
addComment(String) - Method in interface edu.stanford.smi.protegex.owl.model.RDFResource
  Adds an rdfs:comment to this resource.
addCopyPastePopup(JTextComponent) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.OWLUI
  Add a context menu containing Cut, Copy, Paste and InsertUnicode
AddCoveringAxiomAction - Class in edu.stanford.smi.protegex.owl.ui.conditions
  An Action to add a covering axiom.
AddCoveringAxiomAction() - Constructor for class edu.stanford.smi.protegex.owl.ui.conditions.AddCoveringAxiomAction
addDataPropertyValue(OWLModel, String, String, String, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
addDataPropertyValueWithLanguage(OWLModel, String, String, String, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
addDatatypes(OWLModel, Vector) - Static method in class edu.stanford.smi.protegex.owl.ui.properties.range.OWLRangeWidget
addDefaultAnnotationProperty(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.ui.components.annotations.DefaultAnnotations
addDefaultColumns() - Method in class edu.stanford.smi.protegex.owl.ui.matrix.cls.ClassMatrixTableModel
addDefaultColumns() - Method in class edu.stanford.smi.protegex.owl.ui.matrix.MatrixTableModel
addDefaultColumns() - Method in class edu.stanford.smi.protegex.owl.ui.matrix.property.PropertyMatrixTableModel
addDefaultRepositories() - Method in class edu.stanford.smi.protegex.owl.repository.RepositoryManager
addDeleteAnonymousClassHook(OWLModel, DeleteAnonymousClassHook) - Static method in class edu.stanford.smi.protegex.owl.util.DeleteAnonymousClassUtil
addDifferentFrom(RDFResource) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
addDifferentFrom(RDFResource) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFIndividual
addDifferentFrom(RDFResource) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
addDifferentFrom(RDFResource, RDFResource) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
addDifferentFrom(RDFResource) - Method in interface edu.stanford.smi.protegex.owl.model.RDFResource
  Adds an owl:differentFrom to this resource.
addDirectSuperclass(Cls, Cls) - Method in class edu.stanford.smi.protegex.owl.model.framestore.FacetUpdateFrameStore
addDirectSuperclass(Cls, Cls) - Method in class edu.stanford.smi.protegex.owl.model.framestore.OwlSubclassFrameStore
addDirectSuperclass(Cls) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeCls
  Deprecated.
addDirectSuperclass(Cls, Cls) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
addDirectSuperslot(Slot, Slot) - Method in class edu.stanford.smi.protegex.owl.model.framestore.RangeUpdateFrameStore
addDirectSuperslot(Slot, Slot) - Method in class edu.stanford.smi.protegex.owl.model.framestore.TypeUpdateFrameStore
addDirectSuperslot(Slot, Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
addDirectSuperslot(Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeSlot
  Deprecated.
addDirectTemplateSlot(Cls, Slot) - Method in class edu.stanford.smi.protegex.owl.model.framestore.DomainUpdateFrameStore
addDirectTemplateSlot(Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeCls
  Deprecated.
addDirectTemplateSlot(Cls, Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
addDirectType(Instance, Cls) - Method in class edu.stanford.smi.protegex.owl.model.framestore.TypeUpdateFrameStore
addDirectType(Cls) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeInstance
  Deprecated.
addDirectType(Instance, Cls) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
addDisjointClass(RDFSClass) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLNamedClass
addDisjointClass(RDFSClass) - Method in interface edu.stanford.smi.protegex.owl.model.OWLNamedClass
  Adds a class to the list of disjoint classes of this.
addDistinctMember(RDFResource) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLAllDifferent
addDistinctMember(RDFResource) - Method in interface edu.stanford.smi.protegex.owl.model.OWLAllDifferent
AddedPrefixesTable - Class in edu.stanford.smi.protegex.owl.ui.metadatatab.imports.wizard
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Sep 30, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
AddedPrefixesTable(NamespaceManager, Collection) - Constructor for class edu.stanford.smi.protegex.owl.ui.metadatatab.imports.wizard.AddedPrefixesTable
AddedPrefixesTableModel - Class in edu.stanford.smi.protegex.owl.ui.metadatatab.imports.wizard
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Sep 30, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
AddedPrefixesTableModel(NamespaceManager, Collection) - Constructor for class edu.stanford.smi.protegex.owl.ui.metadatatab.imports.wizard.AddedPrefixesTableModel
addedToTask(ReasonerTaskEvent) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.ClassifyTaxonomyTask
addedToTask(ReasonerTaskEvent) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.ClassifyTaxonomyTask
addedToTask(ReasonerTaskEvent) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.ReasonerTaskAdapter
addedToTask(ReasonerTaskEvent) - Method in interface edu.stanford.smi.protegex.owl.inference.protegeowl.task.ReasonerTaskListener
addedToUnionDomainOf(RDFSClass, RDFProperty, ClsEvent) - Method in class edu.stanford.smi.protegex.owl.model.event.ClassAdapter
addedToUnionDomainOf(RDFSClass, RDFProperty) - Method in class edu.stanford.smi.protegex.owl.model.event.ClassAdapter
addedToUnionDomainOf(RDFSClass, RDFProperty) - Method in interface edu.stanford.smi.protegex.owl.model.event.ClassListener
  Called after a class has been added to the union domain of a property.
addEmptyDefinitionBlock() - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTableModel
addEmptyRow(int) - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.DisjointClassesTableModel
addEmptyRow(int) - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTableModel
addEmptyRow(int) - Method in class edu.stanford.smi.protegex.owl.ui.owltable.AbstractOWLTableModel
  Called to allow for editing.
addEmptyRow(int) - Method in interface edu.stanford.smi.protegex.owl.ui.owltable.OWLTableModel
addEquivalentClass(RDFSClass) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLNamedClass
addEquivalentClass(RDFSClass) - Method in interface edu.stanford.smi.protegex.owl.model.OWLNamedClass
  Adds a given class to the list of equivalent classes of this.
addEquivalentProperty(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
addEquivalentProperty(RDFProperty) - Method in interface edu.stanford.smi.protegex.owl.model.RDFProperty
  Adds a property to the list of equivalent properties of this.
addError(Object) - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.imports.wizard.AbstractImportEntry
addEscapes(String) - Static method in error edu.stanford.smi.protegex.owl.model.classparser.compact.TokenMgrError
  Replaces unprintable characters by their espaced (or unicode escaped) equivalents in the given string
addEscapes(String) - Static method in error edu.stanford.smi.protegex.owl.model.classparser.dl.TokenMgrError
  Replaces unprintable characters by their espaced (or unicode escaped) equivalents in the given string
addEscapes(String) - Static method in error edu.stanford.smi.protegex.owl.model.classparser.manchester.TokenMgrError
  Replaces unprintable characters by their espaced (or unicode escaped) equivalents in the given string
addExtraDirectTypes(Instance, Instance) - Method in class edu.stanford.smi.protegex.owl.storage.KnowledgeBaseCopier
addExtraDirectTypes(Instance, Instance) - Method in class edu.stanford.smi.protegex.owl.storage.ProtegeSaver
addFacetListener(FacetListener) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not needed
addFacetListener(Facet, FacetListener) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not needed
addFrame(Cls) - Method in class edu.stanford.smi.protegex.owl.jena.parser.SuperClsCache
addFrameListener(FrameListener) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeInstance
  Deprecated.
addFrameListener(Frame, FrameListener) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not needed
addFrameListener(FrameListener) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
addFrameListener() - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.OWLMetadataTab
addFrameTreeFinderButton(Finder, Action) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.OWLUI
addGciAxiom(RDFSClass) - Method in class edu.stanford.smi.protegex.owl.jena.parser.GlobalParserCache
addGlobalRepository(Repository) - Method in class edu.stanford.smi.protegex.owl.repository.RepositoryManager
addGlobalRepository(int, Repository) - Method in class edu.stanford.smi.protegex.owl.repository.RepositoryManager
addHeaderButton(Action) - Method in class edu.stanford.smi.protegex.owl.ui.OWLLabeledComponent
addHierarchy(Hierarchy) - Method in class edu.stanford.smi.protegex.owl.ui.cls.HierarchiesPanel
addHierarchy(Hierarchy) - Method in interface edu.stanford.smi.protegex.owl.ui.cls.HierarchyManager
addHierarchyPanel(HierarchyPanel) - Method in class edu.stanford.smi.protegex.owl.ui.cls.HierarchiesPanel
addHierarchyWindow(Hierarchy) - Method in class edu.stanford.smi.protegex.owl.ui.cls.HierarchiesPanel
addIgnoreImport(String) - Method in class edu.stanford.smi.protegex.owl.jena.creator.JenaCreator
addImport(String, String) - Method in class edu.stanford.smi.protegex.owl.jena.OWLFilesCreateProjectPlugin
addImport(String, String) - Method in interface edu.stanford.smi.protegex.owl.jena.OWLFilesPlugin
  Deprecated.
addImport(String) - Method in class edu.stanford.smi.protegex.owl.jena.triplestore.JenaMemoryTripleWriter
addImport(TripleStore) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractNamespaceManager
addImport(TripleStore) - Method in class edu.stanford.smi.protegex.owl.model.impl.ImportingOwlNamespaceManager
addImport(TripleStore) - Method in class edu.stanford.smi.protegex.owl.model.impl.UnmodifiableNamespaceManager
addImport(TripleStore) - Method in interface edu.stanford.smi.protegex.owl.model.NamespaceManager
addImport(String) - Method in class edu.stanford.smi.protegex.owl.model.triplestore.DelegatingTripleWriter
addImport(String) - Method in interface edu.stanford.smi.protegex.owl.model.triplestore.TripleWriter
  Adds an owl:imports statement to the default ontology in this writer.
addImport(URI) - Method in class edu.stanford.smi.protegex.owl.model.util.ImportHelper
  Adds an ontology to the set of ontologies that will be imported.
addImport(InputStream) - Method in class edu.stanford.smi.protegex.owl.model.util.ImportHelper
  Adds the ontology in an input stream to the set of ontologies that will be imported.
addImport(String, String) - Method in class edu.stanford.smi.protegex.owl.storage.ProtegeFromOWLFilesCreateProjectPlugin
addImport(String) - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.imports.ImportsTableModel
addImportEntry(ImportEntry) - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.imports.wizard.ImportWizardData
addImports(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLOntology
  Imprtant - for usage see `OWLOntology`
addImports(URI) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLOntology
addImports(RDFExternalResource) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLOntology
addImports(RDFUntypedResource) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLOntology
addImports(OWLOntology) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLOntology
addImports(String) - Method in interface edu.stanford.smi.protegex.owl.model.OWLOntology
  Adds an URI to the owl:imports statements of this ontology.
addImports(URI) - Method in interface edu.stanford.smi.protegex.owl.model.OWLOntology
addImports(RDFExternalResource) - Method in interface edu.stanford.smi.protegex.owl.model.OWLOntology
  Deprecated. use version with RDFUntypedResource instead
addImports(OWLOntology) - Method in interface edu.stanford.smi.protegex.owl.model.OWLOntology
addImports(RDFUntypedResource) - Method in interface edu.stanford.smi.protegex.owl.model.OWLOntology
addIncompatibleWith(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLOntology
addIncompatibleWith(String) - Method in interface edu.stanford.smi.protegex.owl.model.OWLOntology
addIndexListener(ActionListener) - Method in class edu.stanford.smi.protegex.owl.ui.navigation.NavigationHistoryManager
AddIndividualAction - Class in edu.stanford.smi.protegex.owl.ui.classform.component.property
  A ResourceSelectionAction to add an individual to a PropertyFormTable.
AddIndividualAction(PropertyFormTable) - Constructor for class edu.stanford.smi.protegex.owl.ui.classform.component.property.AddIndividualAction
addInferredSuperclass(RDFSClass) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLNamedClass
addInferredSuperclass(RDFSClass) - Method in interface edu.stanford.smi.protegex.owl.model.OWLNamedClass
  Adds a computed superclass, as the result of a classification.
addInstance(Instance, String, Cls, boolean) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
addInstanceDisplayPluginClass(Class) - Static method in class edu.stanford.smi.protegex.owl.ui.resourcedisplay.ResourceDisplayPluginManager
  A work-around method for InstanceDisplayPlugins from outside the OWL Plugin.
addInstanceListener(InstanceListener) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeInstance
  Deprecated.
addInstanceListener(Instance, InstanceListener) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
addInstanceListener(InstanceListener) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
addInstanceType(Instance, Cls, TripleStore) - Static method in class edu.stanford.smi.protegex.owl.jena.parser.FrameCreatorUtility
addIOAddress(String) - Method in class edu.stanford.smi.protegex.owl.model.triplestore.impl.TripleStoreImpl
addIOAddress(String) - Method in interface edu.stanford.smi.protegex.owl.model.triplestore.TripleStore
addIsDefinedBy(RDFResource) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
addIsDefinedBy(RDFResource) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFIndividual
addIsDefinedBy(RDFResource) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
addIsDefinedBy(Instance, Instance) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
addIsDefinedBy(RDFResource) - Method in interface edu.stanford.smi.protegex.owl.model.RDFResource
  Adds an rdfs:isDefinedBy to this resource.
addItem(int, ConditionsTableItem) - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTableModel
addKeyListener(KeyListener) - Method in class edu.stanford.smi.protegex.owl.ui.search.finder.FindResultsListView
addKeyListener(KeyListener) - Method in class edu.stanford.smi.protegex.owl.ui.search.finder.FindResultsTableView
addKeyword(String, Color, Color) - Method in class edu.stanford.smi.protegex.owl.ui.ResourceRenderer
addKnowledgeBaseListener(KnowledgeBaseListener) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
addLabel(String, String) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
addLabel(String, String) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFIndividual
addLabel(String, String) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
addLabel(RDFResource, String, String) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
addLabel(String, String) - Method in interface edu.stanford.smi.protegex.owl.model.RDFResource
  Adds a label to this.
addListDataListener(ListDataListener) - Method in class edu.stanford.smi.protegex.owl.ui.search.finder.ResultsViewModelFind
addListener(DIGLoggerListener) - Method in class edu.stanford.smi.protegex.owl.inference.dig.reasoner.logger.DIGLogger
addListener(ReasonerLoggerListener) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.log.ReasonerLogger
addListeners() - Method in class edu.stanford.smi.protegex.owl.inference.reasoner.AbstractProtegeReasoner
addLogicalFiller(OWLModel, Frame, Frame, String, TripleStore) - Static method in class edu.stanford.smi.protegex.owl.jena.parser.LogicalClassCreatorUtility
addMappedValues(int, Class<? extends Instance>) - Static method in class edu.stanford.smi.protegex.owl.model.factory.FrameTypeId2OWLJavaClass
addMatchingRDFIndividuals(String, Set<RDFResource>, OWLModel) - Static method in class edu.stanford.smi.protegex.owl.ui.code.OWLResourceNameMatcher
addMatchingRDFProperties(String, Set<RDFResource>, OWLModel) - Static method in class edu.stanford.smi.protegex.owl.ui.code.OWLResourceNameMatcher
addMatchingRDFSNamedClasses(String, Set<RDFResource>, OWLModel) - Static method in class edu.stanford.smi.protegex.owl.ui.code.OWLResourceNameMatcher
addModelListener(ModelListener) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
addModelListener(ModelListener) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Adds a ModelListener to receive notifications when resources have been created, renamed or deleted.
addMouseListener(MouseListener) - Method in class edu.stanford.smi.protegex.owl.ui.search.finder.FindResultsListView
addMouseListener(MouseListener) - Method in class edu.stanford.smi.protegex.owl.ui.search.finder.FindResultsTableView
AddNamedClassAction - Class in edu.stanford.smi.protegex.owl.ui.classform.component.property
AddNamedClassAction(PropertyFormTable) - Constructor for class edu.stanford.smi.protegex.owl.ui.classform.component.property.AddNamedClassAction
addNamespaceManagerListener(NamespaceManagerListener) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractNamespaceManager
addNamespaceManagerListener(NamespaceManagerListener) - Method in class edu.stanford.smi.protegex.owl.model.impl.UnmodifiableNamespaceManager
addNamespaceManagerListener(NamespaceManagerListener) - Method in interface edu.stanford.smi.protegex.owl.model.NamespaceManager
addNavigationMenuItems(RDFResource, JPopupMenu) - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTable
addNavigationMenuItems(RDFResource, JPopupMenu) - Method in class edu.stanford.smi.protegex.owl.ui.owltable.SymbolTable
addNestedWidget(SlotWidget, String, String, String) - Method in class edu.stanford.smi.protegex.owl.ui.widget.MultiWidgetPropertyWidget
  Adds a new nested widget.
addNotify() - Method in class edu.stanford.smi.protegex.owl.ui.resourcedisplay.InstanceNameEditor
addObject(RDFResource, boolean) - Method in class edu.stanford.smi.protegex.owl.ui.components.AddablePropertyValuesComponent
addObject(RDFResource, boolean) - Method in class edu.stanford.smi.protegex.owl.ui.components.superclasses.RDFSSubClassOfComponent
addObjectPropertyValue(OWLModel, String, String, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
addOneOf(RDFResource) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLEnumeratedClass
addOneOf(RDFResource) - Method in interface edu.stanford.smi.protegex.owl.model.OWLEnumeratedClass
  Adds a resource to this enumeration.
addOntologyToTripleStore(OWLModel, TripleStore, String) - Static method in class edu.stanford.smi.protegex.owl.model.factory.FactoryUtils
addOperand(RDFSClass) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLNAryLogicalClass
addOperand(RDFSClass) - Method in interface edu.stanford.smi.protegex.owl.model.OWLNAryLogicalClass
  Adds an operand to this.
addOWLFullModel(OntModel) - Static method in class edu.stanford.smi.protegex.owl.jena.Jena
  Simulates the import of the OWL/RDFS meta ontologies.
addOWLImport(String, String) - Static method in class edu.stanford.smi.protegex.owl.jena.parser.OWLImportsCache
addOWLModelAction(OWLModelAction) - Method in interface edu.stanford.smi.protegex.owl.ui.actions.OWLModelActionManager.Adder
addOWLModelActionsToMenubar(OWLModel, OWLModelActionManager.Adder) - Static method in class edu.stanford.smi.protegex.owl.ui.actions.OWLModelActionManager
addOWLModelActionsToToolbar(OWLModel, OWLModelActionManager.Adder) - Static method in class edu.stanford.smi.protegex.owl.ui.actions.OWLModelActionManager
addOWLPropertyValue(OWLModel, String, String, Object) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
addOWLPropertyValue(OWLModel, OWLIndividual, String, Object) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
addOWLSuperClass(OWLModel, String, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
addOWLSuperClass(OWLModel, URI, URI) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
addOWLSuperClass(OWLClass, OWLClass) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
addOWLTest(OWLTest) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
addOWLTest(OWLTest) - Method in interface edu.stanford.smi.protegex.owl.testing.OWLTestManager
addOWLTestClass(Class) - Static method in class edu.stanford.smi.protegex.owl.testing.OWLTestLibrary
  A work-around method for OWLTests from outside the OWL Plugin.
addOwnFacetValue(Slot, Facet, Object) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeInstance
  Deprecated. no OWL equivalent
addOwnSlotValue(Frame, Slot, Object, TripleStore) - Static method in class edu.stanford.smi.protegex.owl.jena.parser.FrameCreatorUtility
addOwnSlotValue(Slot, Object) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeInstance
  Deprecated.
addOwnSlotValue(Frame, Slot, Object) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
addParserError(MessageError) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
addPlugin(AnnotationsWidgetPlugin) - Static method in class edu.stanford.smi.protegex.owl.ui.components.triples.AbstractTriplesComponent
addPrefix(NamespaceManager) - Static method in class edu.stanford.smi.protegex.owl.ui.metadatatab.prefixes.PrefixesPanel
addPrefixesToModelListener(OWLModel, TripleStore) - Static method in class edu.stanford.smi.protegex.owl.model.factory.FactoryUtils
addPriorVersion(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLOntology
addPriorVersion(String) - Method in interface edu.stanford.smi.protegex.owl.model.OWLOntology
addProjectRepository(Repository) - Method in class edu.stanford.smi.protegex.owl.repository.RepositoryManager
addProjectRepository(int, Repository) - Method in class edu.stanford.smi.protegex.owl.repository.RepositoryManager
AddPropertyAction - Class in edu.stanford.smi.protegex.owl.ui.clsproperties
  An Action to add a selected property to the domain of the currently edited Cls.
AddPropertyAction(PropertyWidget) - Constructor for class edu.stanford.smi.protegex.owl.ui.clsproperties.AddPropertyAction
addPropertyChangeListener(PropertyChangeListener) - Method in class edu.stanford.smi.protegex.owl.ui.actions.AbstractOWLModelAction
addPropertyChangeListener(PropertyChangeListener) - Method in interface edu.stanford.smi.protegex.owl.ui.actions.OWLModelAction
  Adds a PropertyChangeListener to receive events when one of the characteristics of this (name, icon, suitability) have changed.
AddPropertyFormComponentAction - Class in edu.stanford.smi.protegex.owl.ui.classform.form
  A ResourceSelectionAction allowing users to add a property component to a ClassForm.
AddPropertyFormComponentAction(ClassForm) - Constructor for class edu.stanford.smi.protegex.owl.ui.classform.form.AddPropertyFormComponentAction
addPropertyListener(PropertyListener) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
addPropertyListener(PropertyListener) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
addPropertyListener(PropertyListener) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Adds a PropertyListener to receive events about any property in this OWLModel.
addPropertyListener(PropertyListener) - Method in interface edu.stanford.smi.protegex.owl.model.RDFProperty
  Adds a PropertyListener to receive events on changes in the property.
addPropertyTypes() - Method in class edu.stanford.smi.protegex.owl.swrl.SWRLSystemFrames.SWRLSystemFramesAssertions
addPropertyValue(RDFProperty, Object) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
addPropertyValue(RDFProperty, Object) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFIndividual
addPropertyValue(RDFProperty, Object) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
addPropertyValue(RDFResource, RDFProperty, Object) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
addPropertyValue(RDFProperty, Object) - Method in interface edu.stanford.smi.protegex.owl.model.RDFResource
  Adds a value for a given property to this resource.
addPropertyValue(OWLIndividual, OWLProperty, Object) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
addPropertyValueListener(PropertyValueListener) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
addPropertyValueListener(PropertyValueListener) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
addPropertyValueListener(PropertyValueListener) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFIndividual
addPropertyValueListener(PropertyValueListener) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
addPropertyValueListener(RDFResource, PropertyValueListener) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
addPropertyValueListener(PropertyValueListener) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Adds a PropertyValueListener to receive events about any property value change in this OWLModel.
addPropertyValueListener(PropertyValueListener) - Method in interface edu.stanford.smi.protegex.owl.model.RDFResource
  Adds a PropertyValueListener to receive events when property values have changed.
AddPropertyWidgetToFormAction - Class in edu.stanford.smi.protegex.owl.ui.resourcedisplay
  An Action to add a slot widget for a currently invisible slot to the FormWidget of the direct type of a given Instance.
AddPropertyWidgetToFormAction(RDFResource, ResourceDisplay) - Constructor for class edu.stanford.smi.protegex.owl.ui.resourcedisplay.AddPropertyWidgetToFormAction
addProtegeType(RDFSClass) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
addProtegeType(RDFSClass) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFIndividual
addProtegeType(RDFSClass) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
addProtegeType(RDFResource, RDFSClass) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
addProtegeType(RDFSClass) - Method in interface edu.stanford.smi.protegex.owl.model.RDFResource
  Adds an type to this resource.
addPurchases(Purchase) - Method in interface edu.stanford.smi.protegex.owlx.examples.javaDemo.model.Customer_
addPurchases(Purchase) - Method in class edu.stanford.smi.protegex.owlx.examples.javaDemo.model.impl.DefaultCustomer_
addRDFSLabel(RDFResource, String, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
addRDFSLabelPropertyValueWithLanguage(OWLModel, String, String, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
addRDFSSuperClass(RDFSClass, RDFSClass) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
addRDFType(RDFSClass) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
addRDFType(RDFSClass) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFIndividual
addRDFType(RDFSClass) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
addRDFType(RDFResource, RDFSClass) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
addRDFType(RDFSClass) - Method in interface edu.stanford.smi.protegex.owl.model.RDFResource
  Adds an rdf:type to this resource.
AddRDFTypeAction - Class in edu.stanford.smi.protegex.owl.ui.actions
AddRDFTypeAction() - Constructor for class edu.stanford.smi.protegex.owl.ui.actions.AddRDFTypeAction
addRepository(Repository) - Method in class edu.stanford.smi.protegex.owl.database.creator.OwlDatabaseCreator
addRepository(Repository) - Method in class edu.stanford.smi.protegex.owl.database.creator.OwlDatabaseFromFileCreator
addRepository(Repository) - Method in class edu.stanford.smi.protegex.owl.jena.creator.OwlProjectFromReaderCreator
addRepository(Repository) - Method in class edu.stanford.smi.protegex.owl.jena.creator.OwlProjectFromStreamCreator
addRepository(Repository) - Method in class edu.stanford.smi.protegex.owl.jena.creator.OwlProjectFromUriCreator
addRepository(Repository) - Static method in class edu.stanford.smi.protegex.owl.jena.JenaKnowledgeBaseFactory
addRepository(Repository) - Method in class edu.stanford.smi.protegex.owl.ui.repository.AbstractRepositoriesPanel
addRepository(Repository) - Method in class edu.stanford.smi.protegex.owl.ui.repository.GlobalRepositoriesPanel
addRepository(Repository) - Method in class edu.stanford.smi.protegex.owl.ui.repository.ProjectRepositoriesPanel
AddResourceAction - Class in edu.stanford.smi.protegex.owl.ui.components
AddResourceAction(AddablePropertyValuesComponent, boolean) - Constructor for class edu.stanford.smi.protegex.owl.ui.components.AddResourceAction
AddResourceAction - Class in edu.stanford.smi.protegex.owl.ui.components.triples
AddResourceAction(TriplesTable) - Constructor for class edu.stanford.smi.protegex.owl.ui.components.triples.AddResourceAction
AddResourceAction(TriplesTable, String, Icon) - Constructor for class edu.stanford.smi.protegex.owl.ui.components.triples.AddResourceAction
addResourceActionClass(Class) - Static method in class edu.stanford.smi.protegex.owl.ui.actions.ResourceActionManager
  A work-around method for ResourceActions from outside the OWL Plugin.
addResourceActions(JPopupMenu, Component, RDFResource) - Static method in class edu.stanford.smi.protegex.owl.ui.actions.ResourceActionManager
addResourceActions(JToolBar, Component, RDFResource) - Static method in class edu.stanford.smi.protegex.owl.ui.actions.ResourceActionManager
addResourceListener(ResourceListener) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
addResourceListener(ResourceListener) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
addResourceListener(ResourceListener) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFIndividual
addResourceListener(ResourceListener) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
addResourceListener(RDFResource, ResourceListener) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
addResourceListener(ResourceListener) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Adds a ResourceListener to receive events about any RDFResource in this OWLModel.
addResourceListener(ResourceListener) - Method in interface edu.stanford.smi.protegex.owl.model.RDFResource
  Adds a ResourceListener to receive events when the type of this has changed.
AddResourcesWithBrowserTextAction - Class in edu.stanford.smi.protegex.owl.ui.components
AddResourcesWithBrowserTextAction(AddablePropertyValuesComponent, boolean) - Constructor for class edu.stanford.smi.protegex.owl.ui.components.AddResourcesWithBrowserTextAction
addRestriction(OWLRestriction) - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTable
addRestrictionFiller(OWLModel, Frame, Frame, String, TripleStore) - Static method in class edu.stanford.smi.protegex.owl.jena.parser.RestrictionCreatorUtility
addResultListener(SearchListener) - Method in class edu.stanford.smi.protegex.owl.ui.search.finder.BasicFind
addResultListener(SearchListener) - Method in interface edu.stanford.smi.protegex.owl.ui.search.finder.Find
addResultsPanel(ResultsPanel, boolean) - Static method in class edu.stanford.smi.protegex.owl.ui.results.ResultsPanelManager
  Deprecated. use the version with the owlModel argument
addResultsPanel(OWLModel, ResultsPanel, boolean) - Static method in class edu.stanford.smi.protegex.owl.ui.results.ResultsPanelManager
  Adds a ResultsPanel or replaces an existing one.
addRow(RDFSClass, int) - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.DisjointClassesTableModel
addRow(RDFSClass, int) - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.PropertiesDefinitionTableModel
addRow(RDFSClass, int) - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.PropertiesSuperclassesTableModel
addRow(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.ui.components.triples.TriplesTableModel
addRow(RDFProperty, Object) - Method in class edu.stanford.smi.protegex.owl.ui.components.triples.TriplesTableModel
addRow(Cls) - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTable
addRow(RDFSClass, int) - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTableModel
  Adds a given Cls to the class conditions specified by a given row.
addRow(OWLTableModel, RDFSClass, int) - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTableTransferHandler
addRow(RDFSClass, int) - Method in interface edu.stanford.smi.protegex.owl.ui.owltable.OWLTableModel
addRow(OWLTableModel, RDFSClass, int) - Method in class edu.stanford.smi.protegex.owl.ui.owltable.OWLTableTransferHandler
addRowAllowMove(RDFSClass, int) - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTableModel
addRows() - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.PropertiesDefinitionTableModel
addRows() - Method in class edu.stanford.smi.protegex.owl.ui.owltable.AbstractOWLTableModel
  This method completely fills the whole table and assumes that the rows list is empty.
addRuleGroup(String) - Method in class edu.stanford.smi.protegex.owl.swrl.model.impl.DefaultSWRLImp
  Add a rule group name to a rule.
addRuleGroup(String) - Method in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLImp
addSameAs(RDFResource) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
addSameAs(RDFResource) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFIndividual
addSameAs(RDFResource) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
addSameAs(Instance, Instance) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
addSameAs(RDFResource) - Method in interface edu.stanford.smi.protegex.owl.model.RDFResource
  Adds an owl:sameAs to this resource.
addSelectionListener(SelectionListener) - Method in class edu.stanford.smi.protegex.owl.ui.navigation.TabNavigationHistorySelectable
  Adds a global selection listener to this to be notified whenever the user has selected a different resource.
addSelectionListener(SelectionListener) - Method in class edu.stanford.smi.protegex.owl.ui.properties.OWLPropertyHierarchiesPanel
addSelectionListener(SelectionListener) - Method in class edu.stanford.smi.protegex.owl.ui.resourcedisplay.ResourceDisplay
addSeparator() - Method in class edu.stanford.smi.protegex.owl.ui.results.ResultsPanel
addSlotListener(Slot, SlotListener) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
addSlotListener(SlotListener) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
addSlotListener(SlotListener) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeSlot
  Deprecated.
addStringDataPropertyValue(OWLModel, String, String, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
AddSubclassAction - Class in edu.stanford.smi.protegex.owl.ui.cls
AddSubclassAction() - Constructor for class edu.stanford.smi.protegex.owl.ui.cls.AddSubclassAction
addSuperclass(RDFSClass) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
addSuperclass(RDFSClass) - Method in interface edu.stanford.smi.protegex.owl.model.RDFSClass
  Adds a class to the rdfs:subClassOfs of this.
addSuperclasses(RDFSNamedClass, OntClass) - Method in class edu.stanford.smi.protegex.owl.jena.creator.JenaCreator
addSuperproperty(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
addSuperproperty(RDFProperty) - Method in interface edu.stanford.smi.protegex.owl.model.RDFProperty
  Adds a property to the super properties of this.
addSWRLHierarchy() - Method in class edu.stanford.smi.protegex.owl.swrl.SWRLSystemFrames.SWRLSystemFramesAssertions
addSystemFrames(FrameStore) - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
addSystemFrames(FrameStore) - Method in class edu.stanford.smi.protegex.owl.swrl.SWRLSystemFrames
addTable(String) - Method in class edu.stanford.smi.protegex.owl.repository.impl.DatabaseRepository
addTaskListener(ReasonerTaskListener) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.AbstractReasonerTask
  Adds a listener.
addTaskListener(ReasonerTaskListener) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.AbstractReasonerTask
  Adds a listener.
addTaskListener(ReasonerTaskListener) - Method in interface edu.stanford.smi.protegex.owl.inference.protegeowl.task.ReasonerTask
  Adds a `ReasonerTaskListener`, which is notified when the state of the task changes, for example when progress changes, or the task message changes.
addTemplateFacetValue(Slot, Facet, Object) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeCls
  Deprecated. no OWL equivalent
addTemplateFacetValue(Cls, Slot, Facet, Object) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not supported in OWL
addTemplateSlotValue(Slot, Object) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeCls
  Deprecated. no OWL equivalent
addTemplateSlotValue(Cls, Slot, Object) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not supported in OWL
AddTodoAction - Class in edu.stanford.smi.protegex.owl.ui.components.annotations
AddTodoAction(TriplesTable) - Constructor for class edu.stanford.smi.protegex.owl.ui.components.annotations.AddTodoAction
addToTripleStore(OWLModel, TripleStore, RDFResource, RDFProperty, Object) - Static method in class edu.stanford.smi.protegex.owl.model.triplestore.TripleStoreUtil
addToUnionDomainOf(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
addTreeModelListener(TreeModelListener) - Method in class edu.stanford.smi.protegex.owl.ui.existential.ExistentialTreeModel
addTriple(Node, Node, Node) - Method in class edu.stanford.smi.protegex.owl.jena.triplestore.JenaMemoryTripleWriter
addTripleAction(TripleAction) - Method in interface edu.stanford.smi.protegex.owl.ui.actions.triple.TripleActionManager.Adder
addTripleActionsToMenu(Triple, TripleActionManager.Adder) - Static method in class edu.stanford.smi.protegex.owl.ui.actions.triple.TripleActionManager
AddTripleStorePanel - Class in edu.stanford.smi.protegex.owl.ui.triplestore
AddTripleStorePanel(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.ui.triplestore.AddTripleStorePanel
AddTripleStorePanel(OWLModel, String) - Constructor for class edu.stanford.smi.protegex.owl.ui.triplestore.AddTripleStorePanel
addType(Instance, Cls) - Method in class edu.stanford.smi.protegex.owl.jena.parser.MultipleTypesInstanceCache
addType(OWLModel, String, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
addType(OWLModel, URI, URI) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
addType(RDFResource, OWLClass) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
addUndefTriple(UndefTriple, String) - Method in class edu.stanford.smi.protegex.owl.jena.parser.GlobalParserCache
addUndefTriple(AResource, AResource, AResource, String, boolean, TripleStore) - Method in class edu.stanford.smi.protegex.owl.jena.parser.TripleProcessor
addUnionDomainClass(RDFSClass) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
addUnionDomainClass(RDFSClass) - Method in interface edu.stanford.smi.protegex.owl.model.RDFProperty
  Adss a class to the domain of this, applying union semantics.
addUnionRangeClass(RDFSClass) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLObjectProperty
addUnionRangeClass(RDFSClass) - Method in interface edu.stanford.smi.protegex.owl.model.OWLObjectProperty
addValidClass(Class) - Method in class edu.stanford.smi.protegex.owl.ui.explorer.filter.DefaultExplorerFilter
addValue(Instance, Slot, Object) - Method in class edu.stanford.smi.protegex.owl.model.triplestore.impl.TripleStoreImpl
addVersionInfo(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
addVersionInfo(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFIndividual
addVersionInfo(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
addVersionInfo(Instance, String) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
addVersionInfo(String) - Method in interface edu.stanford.smi.protegex.owl.model.RDFResource
  Adds an owl:versionInfo to this resource.
addViewButton(LabeledComponent, Action) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.WidgetUtilities
addViewSettings(PropertyList) - Method in class edu.stanford.smi.protegex.owl.model.factory.AbstractOwlProjectCreator
adjustBeginLineColumn(int, int) - Method in class edu.stanford.smi.protegex.owl.model.classparser.compact.JavaCharStream
  Method to adjust line and column numbers for the start of a token.
adjustBeginLineColumn(int, int) - Method in class edu.stanford.smi.protegex.owl.model.classparser.dl.JavaCharStream
  Method to adjust line and column numbers for the start of a token.
adjustBeginLineColumn(int, int) - Method in class edu.stanford.smi.protegex.owl.model.classparser.manchester.JavaCharStream
  Method to adjust line and column numbers for the start of a token.
adjustBrowserTextBasedOnPreferences(OWLModel) - Static method in class edu.stanford.smi.protegex.owl.model.factory.FactoryUtils
AdjustBuffSize() - Method in class edu.stanford.smi.protegex.owl.model.classparser.compact.JavaCharStream
AdjustBuffSize() - Method in class edu.stanford.smi.protegex.owl.model.classparser.dl.JavaCharStream
AdjustBuffSize() - Method in class edu.stanford.smi.protegex.owl.model.classparser.manchester.JavaCharStream
adjustForClient() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
adjustGUI(Project) - Static method in class edu.stanford.smi.protegex.owl.swrl.ui.SWRLProjectPlugin
adjustOntologyName(String) - Static method in class edu.stanford.smi.protegex.owl.model.factory.FactoryUtils
adjustWidgets(Project) - Static method in class edu.stanford.smi.protegex.owl.swrl.ui.SWRLProjectPlugin
advanceToNextElement() - Method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DefaultDIGQueryResponseIterator
afterCreate(Project) - Method in class edu.stanford.smi.protegex.owl.ui.menu.OWLMenuProjectPlugin
afterLoad(Project) - Method in class edu.stanford.smi.protegex.owl.swrl.ui.SWRLProjectPlugin
afterLoad(Project) - Method in class edu.stanford.smi.protegex.owl.ui.menu.OWLMenuProjectPlugin
afterSave(Project) - Method in class edu.stanford.smi.protegex.owl.ui.menu.OWLMenuProjectPlugin
afterShow(ProjectView, ProjectToolBar, ProjectMenuBar) - Method in class edu.stanford.smi.protegex.owl.ui.menu.OWLMenuProjectPlugin
aggregateFunctionNames - Static variable in class edu.stanford.smi.protegex.owl.swrl.model.SQWRLNames
AL - Static variable in class edu.stanford.smi.protegex.owl.model.util.DLExpressivityChecker
ALL - Static variable in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGVocabulary.Language
ALL - Static variable in interface edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParserConstants
ALL - Static variable in class edu.stanford.smi.protegex.owl.ui.forms.AbsoluteFormsGenerator
ALL_CONCEPT_NAMES - Static variable in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGVocabulary.Ask
ALL_DIFFERENT - Static variable in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGVocabulary.Tell
ALL_DIFFERENT - Static variable in interface edu.stanford.smi.protegex.owl.model.OWLNames.Cls
ALL_INDIVIDUALS - Static variable in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGVocabulary.Ask
ALL_ROLE_NAMES - Static variable in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGVocabulary.Ask
ALL_VALUES_FROM - Static variable in interface edu.stanford.smi.protegex.owl.model.OWLNames.Slot
ALL_VALUES_FROM_RESTRICTION - Static variable in interface edu.stanford.smi.protegex.owl.model.OWLNames.Cls
AllDifferentAction - Class in edu.stanford.smi.protegex.owl.ui.metadatatab.alldifferent
  An OWLModelAction to open a dialog to edit the owl:AllDifferents of a given OWLModel.
AllDifferentAction() - Constructor for class edu.stanford.smi.protegex.owl.ui.metadatatab.alldifferent.AllDifferentAction
AllDifferentEditorPanel - Class in edu.stanford.smi.protegex.owl.ui.metadatatab.alldifferent
AllDifferentEditorPanel(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.ui.metadatatab.alldifferent.AllDifferentEditorPanel
allDifferentMemberChanged() - Method in interface edu.stanford.smi.protegex.owl.ui.metadatatab.alldifferent.AllDifferentMemberChangedListener
allDifferentMemberChanged() - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.alldifferent.AllDifferentSelectionPanel
AllDifferentMemberChangedListener - Interface in edu.stanford.smi.protegex.owl.ui.metadatatab.alldifferent
AllDifferentPanel - Class in edu.stanford.smi.protegex.owl.ui.metadatatab.alldifferent
  A component to edit owl:AllDifferent blocks in the OWL ontology.
AllDifferentPanel(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.ui.metadatatab.alldifferent.AllDifferentPanel
AllDifferentSelectionPanel - Class in edu.stanford.smi.protegex.owl.ui.metadatatab.alldifferent
AllDifferentSelectionPanel(OWLModel, AllDifferentEditorPanel) - Constructor for class edu.stanford.smi.protegex.owl.ui.metadatatab.alldifferent.AllDifferentSelectionPanel
AllDifferentWidget - Class in edu.stanford.smi.protegex.owl.ui.metadatatab.alldifferent
  A property widget to edit the AllDifferent's in a KnowledgeBase.
AllDifferentWidget() - Constructor for class edu.stanford.smi.protegex.owl.ui.metadatatab.alldifferent.AllDifferentWidget
ALLOW_MULTIUSER_SET_ACTIVE_ONTOLOGY - Static variable in class edu.stanford.smi.protegex.owl.ui.importstree.server.CheckSetActiveImportAllowedJob
ALLOWED_PARENT - Static variable in class edu.stanford.smi.protegex.owl.model.ProtegeNames
allowTransition(FrameStore, OwlState, Frame, OwlState, Frame) - Static method in enum edu.stanford.smi.protegex.owl.server.OwlState
AllValuesFrom_Restrictions - Static variable in class edu.stanford.smi.protegex.owl.ui.profiles.OWLProfiles
AllValuesFromRestrictionUpdater - Class in edu.stanford.smi.protegex.owl.model.framestore.updater
AllValuesFromRestrictionUpdater(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.model.framestore.updater.AllValuesFromRestrictionUpdater
AlreadyImportedException - Exception in edu.stanford.smi.protegex.owl.model.factory
AlreadyImportedException() - Constructor for exception edu.stanford.smi.protegex.owl.model.factory.AlreadyImportedException
AlreadyImportedException(String) - Constructor for exception edu.stanford.smi.protegex.owl.model.factory.AlreadyImportedException
AlreadyImportedException(String, Throwable) - Constructor for exception edu.stanford.smi.protegex.owl.model.factory.AlreadyImportedException
AlreadyImportedException(Throwable) - Constructor for exception edu.stanford.smi.protegex.owl.model.factory.AlreadyImportedException
ALT - Static variable in interface edu.stanford.smi.protegex.owl.model.RDFNames.Cls
AmbiguousNameException - Exception in edu.stanford.smi.protegex.owl.model.classparser
AmbiguousNameException(String) - Constructor for exception edu.stanford.smi.protegex.owl.model.classparser.AmbiguousNameException
ANCESTORS - Static variable in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGVocabulary.Ask
AND - Static variable in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGVocabulary.Language
AND - Static variable in interface edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParserConstants
AND_CHAR - Static variable in class edu.stanford.smi.protegex.owl.swrl.parser.SWRLParser
ANNOTATION - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
ANNOTATION_PROPERTY - Static variable in interface edu.stanford.smi.protegex.owl.model.OWLNames.Cls
ANNOTATION_PROPERTY - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
annotationDatatypePropertyTypes - Variable in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames.SystemFramesAsserter
annotationObjectPropertyTypes - Variable in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames.SystemFramesAsserter
AnnotationPropertyMatrixColumn - Class in edu.stanford.smi.protegex.owl.ui.matrix
AnnotationPropertyMatrixColumn(RDFProperty) - Constructor for class edu.stanford.smi.protegex.owl.ui.matrix.AnnotationPropertyMatrixColumn
ANNOTATIONS - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
ANNOTATIONS_TABLE - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
AnnotationsComponent - Class in edu.stanford.smi.protegex.owl.ui.components.annotations
  A PropertyWidget to edit the values of annotation properties.
AnnotationsComponent(RDFProperty) - Constructor for class edu.stanford.smi.protegex.owl.ui.components.annotations.AnnotationsComponent
AnnotationsComponent(RDFProperty, boolean) - Constructor for class edu.stanford.smi.protegex.owl.ui.components.annotations.AnnotationsComponent
AnnotationsLangEditor - Class in edu.stanford.smi.protegex.owl.ui.components.annotations
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Oct 14, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
AnnotationsLangEditor(OWLModel, JTable) - Constructor for class edu.stanford.smi.protegex.owl.ui.components.annotations.AnnotationsLangEditor
AnnotationsTable - Class in edu.stanford.smi.protegex.owl.ui.components.annotations
  A JTable optimized for displaying a AnnotationsTableModel.
AnnotationsTable(Project, AnnotationsTableModel) - Constructor for class edu.stanford.smi.protegex.owl.ui.components.annotations.AnnotationsTable
AnnotationsTableCellHolder - Class in edu.stanford.smi.protegex.owl.ui.components.annotations
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Oct 14, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
AnnotationsTableCellHolder(JComponent, String) - Constructor for class edu.stanford.smi.protegex.owl.ui.components.annotations.AnnotationsTableCellHolder
AnnotationsTableModel - Class in edu.stanford.smi.protegex.owl.ui.components.annotations
  A TriplesTableModel that is restricted to only display annotation properties.
AnnotationsTableModel() - Constructor for class edu.stanford.smi.protegex.owl.ui.components.annotations.AnnotationsTableModel
AnnotationsTableModel(RDFResource) - Constructor for class edu.stanford.smi.protegex.owl.ui.components.annotations.AnnotationsTableModel
AnnotationsValueEditor - Class in edu.stanford.smi.protegex.owl.ui.components.annotations
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Sep 7, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
AnnotationsValueEditor(OWLModel, JTable) - Constructor for class edu.stanford.smi.protegex.owl.ui.components.annotations.AnnotationsValueEditor
AnnotationsValueRenderer - Class in edu.stanford.smi.protegex.owl.ui.components.annotations
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Sep 7, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
AnnotationsValueRenderer() - Constructor for class edu.stanford.smi.protegex.owl.ui.components.annotations.AnnotationsValueRenderer
AnnotationsViewSettingsPanel - Class in edu.stanford.smi.protegex.owl.ui.menu.preferences
AnnotationsViewSettingsPanel(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.ui.menu.preferences.AnnotationsViewSettingsPanel
AnnotationsWidget - Class in edu.stanford.smi.protegex.owl.ui.metadata
  A PropertyWidget to edit the values of annotation properties.
AnnotationsWidget() - Constructor for class edu.stanford.smi.protegex.owl.ui.metadata.AnnotationsWidget
AnnotationsWidgetMetadata - Class in edu.stanford.smi.protegex.owl.ui.metadata
AnnotationsWidgetMetadata() - Constructor for class edu.stanford.smi.protegex.owl.ui.metadata.AnnotationsWidgetMetadata
AnnotationsWidgetPlugin - Interface in edu.stanford.smi.protegex.owl.ui.metadata
  An object that can be used to customize the appearance and behavior of datatype values in the AnnotationsWidget.
AnnotationTextAreaWidget - Class in edu.stanford.smi.protegex.owl.ui.metadata
  A property widget that can be used to edit a value of a (multi-valued) annotation property.
AnnotationTextAreaWidget() - Constructor for class edu.stanford.smi.protegex.owl.ui.metadata.AnnotationTextAreaWidget
ANONYMOUS_BASE - Static variable in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
ANONYMOUS_CLASS - Static variable in interface edu.stanford.smi.protegex.owl.model.OWLNames.Cls
ANONYMOUS_OWL_CLASS - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
ANONYMOUS_ROOT - Static variable in interface edu.stanford.smi.protegex.owl.model.OWLNames.Cls
ANY_TABLE_ENTRY - Variable in class edu.stanford.smi.protegex.owl.ui.repository.wizard.impl.DatabaseWizardPanel
ANY_URI - Static variable in interface edu.stanford.smi.protegex.owl.model.XSDNames
ANY_URI - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLConstants.BuiltIns
  Deprecated.
append(Object) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFList
append(Object) - Method in interface edu.stanford.smi.protegex.owl.model.RDFList
  Appends a value to this list.
Append - Static variable in class edu.stanford.smi.protegex.owl.swrl.model.SQWRLNames
appendListValue(RDFResource, Instance) - Method in class edu.stanford.smi.protegex.owl.ui.components.rdflist.RDFListComponent
APPLICATION_PROPERTY - Static variable in class edu.stanford.smi.protegex.owl.model.classdisplay.OWLClassDisplayFactory
areImpsEqual(SWRLImp, SWRLImp) - Method in class edu.stanford.smi.protegex.owl.swrl.model.SWRLFactory
areValidOwnSlotValues(Slot, Collection) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeInstance
  Deprecated. not needed
areValidOwnSlotValues(Frame, Slot, Collection) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. this method is based on facets which are not supported in OWL
ARGS - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.Slot
ARGUMENT1 - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.Slot
ARGUMENT2 - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.Slot
ARGUMENTS - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.Slot
as(Class) - Method in class edu.stanford.smi.protegex.owl.javacode.AbstractCodeGeneratorIndividual
as(RDFResource, Class<? extends X>) - Static method in class edu.stanford.smi.protegex.owl.javacode.ProtegeJavaMapping
as(RDFResource, Class) - Method in class edu.stanford.smi.protegex.owl.model.factory.OWLJavaFactory
as(Class) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
as(Class) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFIndividual
as(Class) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
as(RDFResource, Class) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
as(Class) - Method in interface edu.stanford.smi.protegex.owl.model.RDFResource
  Converts this dynamically into an instance of a given Java interface.
asDatatypeProperty(Resource) - Static method in class edu.stanford.smi.protegex.owl.jena.Jena
ASKS - Static variable in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGVocabulary
asObjectProperty(Resource) - Static method in class edu.stanford.smi.protegex.owl.jena.Jena
asOntClass(Resource) - Static method in class edu.stanford.smi.protegex.owl.jena.Jena
asOntProperty(Resource) - Static method in class edu.stanford.smi.protegex.owl.jena.Jena
asRDFObject(Object) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
asRDFObject(Object) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets an `RDFObject` for a given value.
asRDFSLiteral(Object) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
asRDFSLiteral(Object) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets an RDFSLiteral for a given value.
asRDFSLiterals(Collection) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
asRDFSLiterals(Collection) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
ASSERT_FALSE - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
ASSERT_TRUE - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
assertDomain(Slot) - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames.SystemFramesAsserter
assertDomain(Slot, Cls) - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames.SystemFramesAsserter
assertDomains(Slot, Cls[]) - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames.SystemFramesAsserter
AssertedClassesPanel - Class in edu.stanford.smi.protegex.owl.ui.cls
  A component displaying the asserted classes tree on the OWLClassesTab.
AssertedClassesPanel(Project, HierarchyManager) - Constructor for class edu.stanford.smi.protegex.owl.ui.cls.AssertedClassesPanel
  Deprecated.
AssertedClassesPanel(OWLModel, HierarchyManager) - Constructor for class edu.stanford.smi.protegex.owl.ui.cls.AssertedClassesPanel
AssertedConditionsWidget - Class in edu.stanford.smi.protegex.owl.ui.conditions
  An AbstractConditionWidget to display and edit the asserted conditions of a class.
AssertedConditionsWidget() - Constructor for class edu.stanford.smi.protegex.owl.ui.conditions.AssertedConditionsWidget
AssertedInstancesListPanel - Class in edu.stanford.smi.protegex.owl.ui.individuals
  The panel that holds the list of direct instances of one or more classes.
AssertedInstancesListPanel(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.ui.individuals.AssertedInstancesListPanel
AssertedSubsumptionTreePanel - Class in edu.stanford.smi.protegex.owl.ui.subsumption
  A SubsumptionTreePanel displaying the asserted superclass relationships.
AssertedSubsumptionTreePanel(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.ui.subsumption.AssertedSubsumptionTreePanel
AssertedSubsumptionTreePanel(Cls) - Constructor for class edu.stanford.smi.protegex.owl.ui.subsumption.AssertedSubsumptionTreePanel
AssertedTypesListPanel - Class in edu.stanford.smi.protegex.owl.ui.individuals
  A panel showing the asserted types of the currently selected instance.
AssertedTypesListPanel(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.ui.individuals.AssertedTypesListPanel
assertFrameName(TripleStore, Frame) - Static method in class edu.stanford.smi.protegex.owl.jena.parser.FrameCreatorUtility
assertFunctional(Slot) - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames.SystemFramesAsserter
assertRange(Slot, Cls) - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames.SystemFramesAsserter
assertTypeAndName(Instance, Cls) - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames.SystemFramesAsserter
assertTypeAndName(Frame, Collection<Cls>) - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames.SystemFramesAsserter
assertTypeAndSubclasses(Cls, Cls, Cls[]) - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames.SystemFramesAsserter
assertValueType(Slot, ValueType) - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames.SystemFramesAsserter
assign(String) - Method in interface edu.stanford.smi.protegex.owl.ui.widget.AssigningTextField.Assign
assignExpression() - Method in interface edu.stanford.smi.protegex.owl.ui.code.SymbolEditor
  Ends the editing process and assigns the expression.
assignExpression() - Method in class edu.stanford.smi.protegex.owl.ui.code.SymbolEditorComponent
assignExpression() - Method in class edu.stanford.smi.protegex.owl.ui.code.SymbolTextArea
assignExpression() - Method in class edu.stanford.smi.protegex.owl.ui.code.SymbolTextField
AssigningTextField - Class in edu.stanford.smi.protegex.owl.ui.widget
  A JTextField that "assigns" its value when it loses its focus and when the user hits enter.
AssigningTextField(AssigningTextField.Assign) - Constructor for class edu.stanford.smi.protegex.owl.ui.widget.AssigningTextField
AssigningTextField.Assign - Interface in edu.stanford.smi.protegex.owl.ui.widget
assignInterval() - Method in interface edu.stanford.smi.protegex.owl.ui.properties.range.ExInclusiveToggleAction.Callback
assignInterval() - Method in class edu.stanford.smi.protegex.owl.ui.properties.range.NumericFacetsPanel
assignInterval(boolean) - Method in class edu.stanford.smi.protegex.owl.ui.properties.range.NumericFacetsPanel
assignRDFTypesToMetaclassInstances(OntModel, Model) - Static method in class edu.stanford.smi.protegex.owl.jena.JenaNormalizer
assignUniqueURI(RDFUntypedResource) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
ATLEAST - Static variable in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGVocabulary.Language
ATMOST - Static variable in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGVocabulary.Language
ATOM - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.Cls
ATOM_LIST - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.Cls
attachDefaultLanguageListener() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
attachListener(Cls) - Method in class edu.stanford.smi.protegex.owl.ui.cls.ClassTreeWithBrowserTextNode
attemptCommit() - Method in class edu.stanford.smi.protegex.owl.ui.resourcedisplay.InstanceNameEditor
attemptDialogClose(int) - Method in class edu.stanford.smi.protegex.owl.ui.dialogs.DefaultModalDialogFactory
attemptDialogClose(int) - Method in interface edu.stanford.smi.protegex.owl.ui.dialogs.ModalDialogFactory
ATTRIBUTE - Static variable in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGVocabulary.Language
autoDeleteOfAnonymousClses - Static variable in class edu.stanford.smi.protegex.owl.model.framestore.OWLFrameStore
  An ugly trick to prevent anonymous classes from being deleted as a side effect
AutoRepairableOWLTest - Interface in edu.stanford.smi.protegex.owl.testing
  A RepairableOWLTest that can be executed efficiently enough to run permanently, i.e.
autoSynchReasoner - Variable in class edu.stanford.smi.protegex.owl.inference.reasoner.AbstractProtegeReasoner
Avg - Static variable in class edu.stanford.smi.protegex.owl.swrl.model.SQWRLNames
AvgAggregateFunction - Static variable in class edu.stanford.smi.protegex.owl.swrl.model.SQWRLNames

## B

back() - Method in class edu.stanford.smi.protegex.owl.ui.navigation.NavigationHistoryManager
backspace() - Method in interface edu.stanford.smi.protegex.owl.ui.code.SymbolEditor
  Performs a backspace operation.
backspace() - Method in class edu.stanford.smi.protegex.owl.ui.code.SymbolEditorComponent
backspace() - Method in class edu.stanford.smi.protegex.owl.ui.code.SymbolTextArea
backspace() - Method in class edu.stanford.smi.protegex.owl.ui.code.SymbolTextField
backspace() - Method in class edu.stanford.smi.protegex.owl.ui.resourceselection.ResourceFilterListModel
backup(int) - Method in class edu.stanford.smi.protegex.owl.model.classparser.compact.JavaCharStream
backup(int) - Method in class edu.stanford.smi.protegex.owl.model.classparser.dl.JavaCharStream
backup(int) - Method in class edu.stanford.smi.protegex.owl.model.classparser.manchester.JavaCharStream
BACKWARD_COMPATIBLE_WITH - Static variable in interface edu.stanford.smi.protegex.owl.model.OWLNames.Slot
BAG - Static variable in interface edu.stanford.smi.protegex.owl.model.RDFNames.Cls
BASE - Static variable in class edu.stanford.smi.protegex.owl.model.XSPNames
  Deprecated. use the helper method `XSPNames.get(OWLModel owlModel, int resourceID)`
BASE_64_BINARY - Static variable in interface edu.stanford.smi.protegex.owl.model.XSDNames
BasicFind - Class in edu.stanford.smi.protegex.owl.ui.search.finder
BasicFind(OWLModel, int) - Constructor for class edu.stanford.smi.protegex.owl.ui.search.finder.BasicFind
beforeHide(ProjectView, ProjectToolBar, ProjectMenuBar) - Method in class edu.stanford.smi.protegex.owl.ui.menu.OWLMenuProjectPlugin
beforeSave(Project) - Method in class edu.stanford.smi.protegex.owl.ui.menu.OWLMenuProjectPlugin
begin(String, boolean) - Method in interface edu.stanford.smi.protegex.owl.model.ProgressManager
  Notifies the manager that a new modal process is about to start.
beginColumn - Variable in class edu.stanford.smi.protegex.owl.model.classparser.compact.Token
  beginLine and beginColumn describe the position of the first character of this token; endLine and endColumn describe the position of the last character of this token.
beginColumn - Variable in class edu.stanford.smi.protegex.owl.model.classparser.dl.Token
  beginLine and beginColumn describe the position of the first character of this token; endLine and endColumn describe the position of the last character of this token.
beginColumn - Variable in class edu.stanford.smi.protegex.owl.model.classparser.manchester.Token
  beginLine and beginColumn describe the position of the first character of this token; endLine and endColumn describe the position of the last character of this token.
beginLine - Variable in class edu.stanford.smi.protegex.owl.model.classparser.compact.Token
  beginLine and beginColumn describe the position of the first character of this token; endLine and endColumn describe the position of the last character of this token.
beginLine - Variable in class edu.stanford.smi.protegex.owl.model.classparser.dl.Token
  beginLine and beginColumn describe the position of the first character of this token; endLine and endColumn describe the position of the last character of this token.
beginLine - Variable in class edu.stanford.smi.protegex.owl.model.classparser.manchester.Token
  beginLine and beginColumn describe the position of the first character of this token; endLine and endColumn describe the position of the last character of this token.
BeginToken() - Method in class edu.stanford.smi.protegex.owl.model.classparser.compact.JavaCharStream
BeginToken() - Method in class edu.stanford.smi.protegex.owl.model.classparser.dl.JavaCharStream
BeginToken() - Method in class edu.stanford.smi.protegex.owl.model.classparser.manchester.JavaCharStream
BODY - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.Slot
BOOLEAN - Static variable in interface edu.stanford.smi.protegex.owl.model.XSDNames
Boolean - Static variable in class edu.stanford.smi.protegex.owl.ui.forms.FormsNames
BOOLEAN_NOT - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLConstants.BuiltIns
  Deprecated.
BOOLEAN_NOT - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.CoreBuiltIns
booleanComboListener - Variable in class edu.stanford.smi.protegex.owl.ui.components.singleliteral.AbstractSingleLiteralComponent
BooleanResultReasonerTask - Interface in edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Aug 17, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm

  Implemented by tasks that return a `boolean` result.
BooleanResultReasonerTask - Interface in edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Aug 17, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm

  Implemented by tasks that return a `boolean` result.
booleanValue - Static variable in class edu.stanford.smi.protegex.owl.ui.forms.FormsNames
BORDER_THICKNESS - Static variable in class edu.stanford.smi.protegex.owl.ui.classform.component.FormComponent
BOTTOM - Static variable in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGVocabulary.Language
browse() - Method in class edu.stanford.smi.protegex.owl.ui.repository.wizard.impl.FileBrowserPanel
browserTextChanged(RDFResource, FrameEvent) - Method in class edu.stanford.smi.protegex.owl.model.event.PropertyValueAdapter
browserTextChanged(RDFResource) - Method in class edu.stanford.smi.protegex.owl.model.event.PropertyValueAdapter
browserTextChanged(FrameEvent) - Method in class edu.stanford.smi.protegex.owl.model.event.PropertyValueAdapter
  Deprecated.
browserTextChanged(RDFResource) - Method in interface edu.stanford.smi.protegex.owl.model.event.PropertyValueListener
  Called when the browser text of an RDFResource has changed.
browserTextChanged(FrameEvent) - Method in interface edu.stanford.smi.protegex.owl.model.event.ProtegeFrameListener
  Deprecated.
bufcolumn - Variable in class edu.stanford.smi.protegex.owl.model.classparser.compact.JavaCharStream
bufcolumn - Variable in class edu.stanford.smi.protegex.owl.model.classparser.dl.JavaCharStream
bufcolumn - Variable in class edu.stanford.smi.protegex.owl.model.classparser.manchester.JavaCharStream
buffer - Variable in class edu.stanford.smi.protegex.owl.model.classparser.compact.JavaCharStream
buffer - Variable in class edu.stanford.smi.protegex.owl.model.classparser.dl.JavaCharStream
buffer - Variable in class edu.stanford.smi.protegex.owl.model.classparser.manchester.JavaCharStream
bufline - Variable in class edu.stanford.smi.protegex.owl.model.classparser.compact.JavaCharStream
bufline - Variable in class edu.stanford.smi.protegex.owl.model.classparser.dl.JavaCharStream
bufline - Variable in class edu.stanford.smi.protegex.owl.model.classparser.manchester.JavaCharStream
bufpos - Variable in class edu.stanford.smi.protegex.owl.model.classparser.compact.JavaCharStream
bufpos - Variable in class edu.stanford.smi.protegex.owl.model.classparser.dl.JavaCharStream
bufpos - Variable in class edu.stanford.smi.protegex.owl.model.classparser.manchester.JavaCharStream
buildGUI() - Method in class edu.stanford.smi.protegex.owl.swrl.ui.widget.SWRLRuleSlotWidget
buildNewProject(KnowledgeBaseFactory) - Method in class edu.stanford.smi.protegex.owl.database.CreateOWLDatabaseFromFileProjectPlugin
buildNewProject(KnowledgeBaseFactory) - Method in class edu.stanford.smi.protegex.owl.database.CreateOWLDatabaseProjectPlugin
buildNewProject(KnowledgeBaseFactory) - Method in class edu.stanford.smi.protegex.owl.jena.OWLFilesCreateProjectPlugin
buildNewProject(KnowledgeBaseFactory) - Method in class edu.stanford.smi.protegex.owl.storage.ProtegeFromOWLFilesCreateProjectPlugin
BUILTIN - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.Cls
BUILTIN - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.Slot
BUILTIN_ATOM - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.Cls
BYTE - Static variable in interface edu.stanford.smi.protegex.owl.model.XSDNames

## C

C - Static variable in class edu.stanford.smi.protegex.owl.model.util.DLExpressivityChecker
calculateMetrics() - Method in class edu.stanford.smi.protegex.owl.model.util.ModelMetrics
calculateTopLevelOntology(OWLModel) - Static method in class edu.stanford.smi.protegex.owl.model.util.ImportUtil
  This is a utility method that calculates the top level ontology from an owlModel.
canAdd(RDFProperty) - Static method in class edu.stanford.smi.protegex.owl.ui.properties.domain.AddClassToDomainAction
canAs(Class) - Method in class edu.stanford.smi.protegex.owl.javacode.AbstractCodeGeneratorIndividual
canAs(RDFResource, Class<? extends RDFResource>) - Static method in class edu.stanford.smi.protegex.owl.javacode.ProtegeJavaMapping
canAs(RDFNode, Resource) - Static method in class edu.stanford.smi.protegex.owl.jena.Jena
  Checks whether a given OntResource has a certain rdf:type, or a subclass thereof.
canAs(RDFResource, Class) - Method in class edu.stanford.smi.protegex.owl.model.factory.OWLJavaFactory
canAs(Class) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
canAs(Class) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFIndividual
canAs(Class) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
canAs(RDFResource, Class) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
canAs(Class) - Method in interface edu.stanford.smi.protegex.owl.model.RDFResource
  Checks whether this can be dynamically morphed into an instance of a given Java interface.
canAsDatatypeProperty(RDFNode) - Static method in class edu.stanford.smi.protegex.owl.jena.Jena
canAsObjectProperty(RDFNode) - Static method in class edu.stanford.smi.protegex.owl.jena.Jena
canAsOntClass(RDFNode) - Static method in class edu.stanford.smi.protegex.owl.jena.Jena
canAsOntProperty(RDFNode) - Static method in class edu.stanford.smi.protegex.owl.jena.Jena
canAsOWLProperty(RDFNode) - Static method in class edu.stanford.smi.protegex.owl.jena.Jena
canBeEmpty() - Method in class edu.stanford.smi.protegex.owl.jena.graph.ProtegeCapabilities
CANCEL_OPTION - Static variable in class edu.stanford.smi.protegex.owl.ui.repository.UnresolvedImportUIHandler
cancelCellEditing() - Method in class edu.stanford.smi.protegex.owl.ui.cls.ClassNameTreeCellEditor
cancelEditing() - Method in class edu.stanford.smi.protegex.owl.ui.code.SymbolCellEditor
cancelEditing() - Method in interface edu.stanford.smi.protegex.owl.ui.code.SymbolEditor
  Cancels the editing process without assigning a value.
cancelEditing() - Method in class edu.stanford.smi.protegex.owl.ui.code.SymbolEditorComponent
cancelEditing() - Method in interface edu.stanford.smi.protegex.owl.ui.code.SymbolEditorHandler
cancelEditing() - Method in class edu.stanford.smi.protegex.owl.ui.code.SymbolTextArea
cancelEditing() - Method in class edu.stanford.smi.protegex.owl.ui.code.SymbolTextField
cancelSearch() - Method in class edu.stanford.smi.protegex.owl.ui.search.finder.BasicFind
cancelSearch() - Method in interface edu.stanford.smi.protegex.owl.ui.search.finder.Find
cancelSearch() - Method in class edu.stanford.smi.protegex.owl.ui.search.finder.ThreadedFind
cancelTask() - Method in class edu.stanford.smi.protegex.owl.model.AbstractTask
cancelTask() - Method in interface edu.stanford.smi.protegex.owl.model.Task
  Requests that the task be cancelled.
canClose(int) - Method in class edu.stanford.smi.protegex.owl.swrl.ui.code.SWRLTextAreaPanel
canClose(int) - Method in class edu.stanford.smi.protegex.owl.ui.code.OWLTextAreaPanel
canClose(int) - Method in interface edu.stanford.smi.protegex.owl.ui.dialogs.ModalDialogFactory.CloseCallback
canClose(int) - Method in class edu.stanford.smi.protegex.owl.ui.restrictions.RestrictionEditorPanel
canCreateProject(KnowledgeBaseFactory, boolean) - Method in class edu.stanford.smi.protegex.owl.database.CreateOWLDatabaseFromFileProjectPlugin
canCreateProject(KnowledgeBaseFactory, boolean) - Method in class edu.stanford.smi.protegex.owl.database.CreateOWLDatabaseProjectPlugin
canCreateProject(KnowledgeBaseFactory, boolean) - Method in class edu.stanford.smi.protegex.owl.jena.OWLFilesCreateProjectPlugin
canCreateProject(KnowledgeBaseFactory, boolean) - Method in class edu.stanford.smi.protegex.owl.storage.ProtegeFromOWLFilesCreateProjectPlugin
canEdit(RDFResource, RDFProperty, Object) - Method in class edu.stanford.smi.protegex.owl.ui.editors.DateTimeValueEditor
canEdit(RDFResource, RDFProperty, Object) - Method in class edu.stanford.smi.protegex.owl.ui.editors.DateValueEditor
canEdit(RDFResource, RDFProperty, Object) - Method in interface edu.stanford.smi.protegex.owl.ui.editors.PropertyValueEditor
  Checks whether this is able to edit values for a certain predicate.
canEdit(RDFResource, RDFProperty, Object) - Method in class edu.stanford.smi.protegex.owl.ui.editors.StringValueEditor
canEdit(RDFResource, RDFProperty, Object) - Method in class edu.stanford.smi.protegex.owl.ui.editors.TimeValueEditor
canImport(JComponent, DataFlavor[]) - Method in class edu.stanford.smi.protegex.owl.ui.owltable.OWLTableTransferHandler
CARDINALITY - Static variable in interface edu.stanford.smi.protegex.owl.model.OWLNames.Slot
CARDINALITY_RESTRICTION - Static variable in interface edu.stanford.smi.protegex.owl.model.OWLNames.Cls
CardinalityRestrictionUpdater - Class in edu.stanford.smi.protegex.owl.model.framestore.updater
CardinalityRestrictionUpdater(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.model.framestore.updater.CardinalityRestrictionUpdater
CardinalityValue() - Method in class edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParser
CATOM - Static variable in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGVocabulary.Language
CEILING - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLConstants.BuiltIns
  Deprecated.
CEILING - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.CoreBuiltIns
CHAIN - Static variable in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGVocabulary.Language
ChangeClosureAxiomButton - Class in edu.stanford.smi.protegex.owl.ui.classform.component.property
  An Action to toggle the closure state of a PropertyFormTable.
ChangeClosureAxiomButton(PropertyFormTable) - Constructor for class edu.stanford.smi.protegex.owl.ui.classform.component.property.ChangeClosureAxiomButton
ChangedClassesChangeComporator - Class in edu.stanford.smi.protegex.owl.ui.subsumption
ChangedClassesChangeComporator() - Constructor for class edu.stanford.smi.protegex.owl.ui.subsumption.ChangedClassesChangeComporator
ChangedClassesPanel - Class in edu.stanford.smi.protegex.owl.ui.subsumption
  A JPanel hosting a table which displays the changed classes.
ChangedClassesPanel(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.ui.subsumption.ChangedClassesPanel
ChangedClassesTableModel - Class in edu.stanford.smi.protegex.owl.ui.subsumption
  A TableModel containing all classes that are either inconsistent or where the asserted subclasses differ from the computed subclasses.
ChangedClassesTableModel(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.ui.subsumption.ChangedClassesTableModel
ChangeMetaclassAction - Class in edu.stanford.smi.protegex.owl.ui.cls
ChangeMetaclassAction() - Constructor for class edu.stanford.smi.protegex.owl.ui.cls.ChangeMetaclassAction
ChangeMetaclassOfSubclassesAction - Class in edu.stanford.smi.protegex.owl.ui.cls
ChangeMetaclassOfSubclassesAction() - Constructor for class edu.stanford.smi.protegex.owl.ui.cls.ChangeMetaclassOfSubclassesAction
ChangePropertyTypeAction - Class in edu.stanford.smi.protegex.owl.ui.properties.actions
ChangePropertyTypeAction() - Constructor for class edu.stanford.smi.protegex.owl.ui.properties.actions.ChangePropertyTypeAction
check() - Method in class edu.stanford.smi.protegex.owl.model.util.DLExpressivityChecker
CHECK_CONSISTENCY - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
checkClass(OWLModel, String) - Method in class edu.stanford.smi.protegex.owl.model.classparser.compact.CompactOWLClassParser
checkClass(OWLModel, String) - Method in class edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxClassParser
checkClass(OWLModel, String) - Method in class edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLClassParser
checkClass(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParser
checkClass(OWLModel, String) - Method in interface edu.stanford.smi.protegex.owl.model.classparser.OWLClassParser
  Performs a test of a given expression and throws an Exception if the expression is currently invalid.
CheckConsistencyAction - Class in edu.stanford.smi.protegex.owl.inference.ui.action
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Jun 20, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
CheckConsistencyAction() - Constructor for class edu.stanford.smi.protegex.owl.inference.ui.action.CheckConsistencyAction
checkExpression(String, RDFProperty, RDFProperty) - Static method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLRestriction
checkExpression(String) - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.ClassDescriptionTextField
checkExpression(String) - Method in class edu.stanford.smi.protegex.owl.ui.clsproperties.NewRestrictionTreeNode
checkExpression(String) - Method in class edu.stanford.smi.protegex.owl.ui.clsproperties.OldRestrictionTreeNode
checkExpression(String) - Method in class edu.stanford.smi.protegex.owl.ui.clsproperties.RestrictionTreeNode
checkExpression(String) - Method in class edu.stanford.smi.protegex.owl.ui.code.OWLTextArea
  Used for error checking during input.
checkExpression(String) - Method in class edu.stanford.smi.protegex.owl.ui.code.OWLTextField
  Used for error checking during input.
checkExpression(String) - Method in class edu.stanford.smi.protegex.owl.ui.restrictions.FillerTextArea
checkFillerText(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLCardinalityBase
checkFillerText(String, RDFProperty) - Static method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLCardinalityBase
checkFillerText(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLQuantifierRestriction
checkFillerText(String, RDFProperty) - Static method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLQuantifierRestriction
checkFillerText(String, RDFProperty, OWLModel) - Static method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLQuantifierRestriction
checkFillerText(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLHasValue
checkFillerText(String, RDFProperty) - Static method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLHasValue
checkFillerText(String) - Method in interface edu.stanford.smi.protegex.owl.model.OWLRestriction
  Checks the filler from a textual expression.
checkHasValueFiller(OWLModel, String) - Method in class edu.stanford.smi.protegex.owl.model.classparser.compact.CompactOWLClassParser
checkHasValueFiller(OWLModel, String) - Method in class edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxClassParser
checkHasValueFiller(OWLModel, String) - Method in class edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLClassParser
checkHasValueFiller(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParser
checkHasValueFiller(OWLModel, String) - Method in interface edu.stanford.smi.protegex.owl.model.classparser.OWLClassParser
checkIfIsValidClassName(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
checkQuantifierFiller(OWLModel, String) - Method in class edu.stanford.smi.protegex.owl.model.classparser.compact.CompactOWLClassParser
checkQuantifierFiller(OWLModel, String) - Method in class edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxClassParser
checkQuantifierFiller(OWLModel, String) - Method in class edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLClassParser
checkQuantifierFiller(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParser
checkQuantifierFiller(OWLModel, String) - Method in interface edu.stanford.smi.protegex.owl.model.classparser.OWLClassParser
CheckSetActiveImportAllowedJob - Class in edu.stanford.smi.protegex.owl.ui.importstree.server
CheckSetActiveImportAllowedJob(OWLOntology) - Constructor for class edu.stanford.smi.protegex.owl.ui.importstree.server.CheckSetActiveImportAllowedJob
CheckSingleConceptConsistencyAction - Class in edu.stanford.smi.protegex.owl.inference.ui.action
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Jul 21, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
CheckSingleConceptConsistencyAction() - Constructor for class edu.stanford.smi.protegex.owl.inference.ui.action.CheckSingleConceptConsistencyAction
checkUndefinedResources(String) - Method in class edu.stanford.smi.protegex.owl.jena.parser.AbstractStatefulTripleProcessor
checkUndefinedResources(String) - Method in class edu.stanford.smi.protegex.owl.jena.parser.TripleProcessor
checkUniCodeExpression(String) - Method in class edu.stanford.smi.protegex.owl.swrl.ui.code.SWRLTextArea
checkUniCodeExpression(String) - Method in class edu.stanford.smi.protegex.owl.swrl.ui.code.SWRLTextField
checkUniCodeExpression(String) - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.manchester.ManchesterOWLTextPane
  Used for error checking during input.
checkUniCodeExpression(String) - Method in class edu.stanford.smi.protegex.owl.ui.code.OWLTextArea
checkUniCodeExpression(String) - Method in class edu.stanford.smi.protegex.owl.ui.code.OWLTextField
checkUniCodeExpression(String) - Method in class edu.stanford.smi.protegex.owl.ui.code.SymbolTextArea
  Used for error checking during input.
checkUniCodeExpression(String) - Method in class edu.stanford.smi.protegex.owl.ui.code.SymbolTextField
  Used for error checking during input.
CHILDREN - Static variable in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGVocabulary.Ask
CLASS_ATOM - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.Cls
CLASS_EXPR_COMMENT - Static variable in interface edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParserConstants
CLASS_FRAME - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
CLASS_ID - Static variable in interface edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxParserConstants
CLASS_MATRIX - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
CLASS_PREDICATE - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.Slot
Class_that_is_also_a_Property - Static variable in class edu.stanford.smi.protegex.owl.ui.profiles.OWLProfiles
Class_Type - Static variable in class edu.stanford.smi.protegex.owl.ui.profiles.OWLProfiles
classAction - Variable in class edu.stanford.smi.protegex.owl.ui.code.SymbolPanel
ClassAdapter - Class in edu.stanford.smi.protegex.owl.model.event
ClassAdapter() - Constructor for class edu.stanford.smi.protegex.owl.model.event.ClassAdapter
ClassAnnotationsAndDescriptionWidget - Class in edu.stanford.smi.protegex.owl.ui.cls
  Author: Matthew Horridge
  The University Of Manchester
  Medical Informatics Group
  Date: Jan 20, 2006

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
ClassAnnotationsAndDescriptionWidget() - Constructor for class edu.stanford.smi.protegex.owl.ui.cls.ClassAnnotationsAndDescriptionWidget
ClassAnnotationsAndDescriptionWidget.MySplitPane - Class in edu.stanford.smi.protegex.owl.ui.cls
classBrowserHeader - Variable in class edu.stanford.smi.protegex.owl.ui.cls.AssertedClassesPanel
ClassCommenter - Class in edu.stanford.smi.protegex.owl.model.util
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Jan 16, 2006

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
ClassCommenter(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.model.util.ClassCommenter
ClassConditionsMatrixColumn - Class in edu.stanford.smi.protegex.owl.ui.matrix.cls
ClassConditionsMatrixColumn() - Constructor for class edu.stanford.smi.protegex.owl.ui.matrix.cls.ClassConditionsMatrixColumn
classCreated(RDFSClass, KnowledgeBaseEvent) - Method in class edu.stanford.smi.protegex.owl.model.event.ModelAdapter
classCreated(RDFSClass) - Method in class edu.stanford.smi.protegex.owl.model.event.ModelAdapter
classCreated(RDFSClass) - Method in interface edu.stanford.smi.protegex.owl.model.event.ModelListener
  Called after a new RDFSClass has been created.
classDeleted(RDFSClass, KnowledgeBaseEvent) - Method in class edu.stanford.smi.protegex.owl.model.event.ModelAdapter
classDeleted(RDFSClass) - Method in class edu.stanford.smi.protegex.owl.model.event.ModelAdapter
classDeleted(RDFSClass) - Method in interface edu.stanford.smi.protegex.owl.model.event.ModelListener
  Called after an RDFSClass has been deleted.
ClassDescriptionEditorComponent - Class in edu.stanford.smi.protegex.owl.ui.clsdesc
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Sep 7, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
ClassDescriptionEditorComponent(OWLModel, SymbolErrorDisplay, boolean) - Constructor for class edu.stanford.smi.protegex.owl.ui.clsdesc.ClassDescriptionEditorComponent
ClassDescriptionTable - Class in edu.stanford.smi.protegex.owl.ui.clsdesc
  A OWLTable for editing the superclasses of a given class.
ClassDescriptionTextField - Class in edu.stanford.smi.protegex.owl.ui.clsdesc
  A OWLTextField to edit a superclass in a ClassDescriptionTable.
ClassDescriptionTextField(OWLModel, SymbolErrorDisplay) - Constructor for class edu.stanford.smi.protegex.owl.ui.clsdesc.ClassDescriptionTextField
ClassDescriptionToolTipGenerator - Class in edu.stanford.smi.protegex.owl.ui.tooltips
ClassDescriptionToolTipGenerator() - Constructor for class edu.stanford.smi.protegex.owl.ui.tooltips.ClassDescriptionToolTipGenerator
ClassDescriptionWidget - Class in edu.stanford.smi.protegex.owl.ui.clsdesc
  An AbstractSlotWidget that displays the superclasses / equivalent classes in a table.
ClassDescriptionWidget() - Constructor for class edu.stanford.smi.protegex.owl.ui.clsdesc.ClassDescriptionWidget
ClassForm - Class in edu.stanford.smi.protegex.owl.ui.classform.form
  A JComponent displaying characteristics of a named class.
ClassForm() - Constructor for class edu.stanford.smi.protegex.owl.ui.classform.form.ClassForm
ClassFormSeparator - Class in edu.stanford.smi.protegex.owl.ui.classform.form
ClassFormSeparator(boolean) - Constructor for class edu.stanford.smi.protegex.owl.ui.classform.form.ClassFormSeparator
ClassFormSwitchableType - Class in edu.stanford.smi.protegex.owl.ui.classform.form
ClassFormSwitchableType() - Constructor for class edu.stanford.smi.protegex.owl.ui.classform.form.ClassFormSwitchableType
ClassFormWidget - Class in edu.stanford.smi.protegex.owl.ui.widget
  A SlotWidget wrapping a ClassForm so that it can be used inside of a traditional Protege form.
ClassFormWidget() - Constructor for class edu.stanford.smi.protegex.owl.ui.widget.ClassFormWidget
CLASSIFICATION_STATUS - Static variable in interface edu.stanford.smi.protegex.owl.model.ProtegeNames.Slot
CLASSIFICATION_STATUS_CONSISTENT_AND_CHANGED - Static variable in interface edu.stanford.smi.protegex.owl.model.OWLNames
CLASSIFICATION_STATUS_CONSISTENT_AND_UNCHANGED - Static variable in interface edu.stanford.smi.protegex.owl.model.OWLNames
CLASSIFICATION_STATUS_INCONSISTENT - Static variable in interface edu.stanford.smi.protegex.owl.model.OWLNames
  Deprecated. Please use the `isConsistent` method on `OWLNamedClass`.
CLASSIFICATION_STATUS_UNDEFINED - Static variable in interface edu.stanford.smi.protegex.owl.model.OWLNames
CLASSIFY - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
CLASSIFY_INDIVIDUAL - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
classifyTaxonomy(ReasonerTaskListener) - Method in class edu.stanford.smi.protegex.owl.inference.dig.DefaultProtegeDIGReasoner
classifyTaxonomy() - Method in class edu.stanford.smi.protegex.owl.inference.dig.DefaultProtegeDIGReasoner
classifyTaxonomy(ReasonerTaskListener) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.DefaultProtegeOWLReasoner
classifyTaxonomy(ReasonerTaskListener) - Method in interface edu.stanford.smi.protegex.owl.inference.protegeowl.ProtegeOWLReasoner
  Deprecated. For each named class in the ontology, this method queries the reasoner for the consistency of the class, its inferred super classes and its inferred equivalent classes.
classifyTaxonomy() - Method in class edu.stanford.smi.protegex.owl.inference.reasoner.AbstractProtegeReasoner
classifyTaxonomy() - Method in interface edu.stanford.smi.protegex.owl.inference.reasoner.ProtegeReasoner
  For each named class in the ontology, this method queries the reasoner for the consistency of the class, its inferred super classes and its inferred equivalent classes.
ClassifyTaxonomyAction - Class in edu.stanford.smi.protegex.owl.inference.ui.action
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Jun 18, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
ClassifyTaxonomyAction() - Constructor for class edu.stanford.smi.protegex.owl.inference.ui.action.ClassifyTaxonomyAction
ClassifyTaxonomyTask - Class in edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Aug 16, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm

  The classify taxonomy task excompases three reasoner tasks:
  a) Checking an updating for inconsistent concepts
  b) Computing the inferred superclasses for consistent concepts
  c) Computing equivalent concepts for consistent concepts
ClassifyTaxonomyTask(ProtegeOWLReasoner) - Constructor for class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.ClassifyTaxonomyTask
ClassifyTaxonomyTask - Class in edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Aug 16, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm

  The classify taxonomy task excompases three reasoner tasks:
  a) Checking an updating for inconsistent concepts
  b) Computing the inferred superclasses for consistent concepts
  c) Computing equivalent concepts for consistent concepts
ClassifyTaxonomyTask(ProtegeReasoner) - Constructor for class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.ClassifyTaxonomyTask
classListener - Variable in class edu.stanford.smi.protegex.owl.inference.reasoner.AbstractProtegeReasoner
ClassListener - Interface in edu.stanford.smi.protegex.owl.model.event
ClassMatrixAction - Class in edu.stanford.smi.protegex.owl.ui.matrix.cls
ClassMatrixAction(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.ui.matrix.cls.ClassMatrixAction
ClassMatrixPanel - Class in edu.stanford.smi.protegex.owl.ui.matrix.cls
ClassMatrixPanel(OWLModel, MatrixFilter) - Constructor for class edu.stanford.smi.protegex.owl.ui.matrix.cls.ClassMatrixPanel
ClassMatrixPanel(OWLModel, MatrixFilter, MatrixTableModel) - Constructor for class edu.stanford.smi.protegex.owl.ui.matrix.cls.ClassMatrixPanel
ClassMatrixTableModel - Class in edu.stanford.smi.protegex.owl.ui.matrix.cls
ClassMatrixTableModel(OWLModel, MatrixFilter) - Constructor for class edu.stanford.smi.protegex.owl.ui.matrix.cls.ClassMatrixTableModel
ClassNameTreeCellEditor - Class in edu.stanford.smi.protegex.owl.ui.cls
  A tree cell editor that allows the name of a class to be edited
ClassNameTreeCellEditor() - Constructor for class edu.stanford.smi.protegex.owl.ui.cls.ClassNameTreeCellEditor
ClassTree - Class in edu.stanford.smi.protegex.owl.ui.cls
ClassTree(Action, LazyTreeRoot) - Constructor for class edu.stanford.smi.protegex.owl.ui.cls.ClassTree
ClassTreeComponent - Class in edu.stanford.smi.protegex.owl.ui.cls
  An panel showing a JTree of all classes in an OWLModel.
ClassTreeComponent(String, OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.ui.cls.ClassTreeComponent
ClassTreeComponent(String, RDFSNamedClass, Action) - Constructor for class edu.stanford.smi.protegex.owl.ui.cls.ClassTreeComponent
ClassTreeFinder - Class in edu.stanford.smi.protegex.owl.ui.search
  This is currently a wrapper of the core Protege ClsTreeFinder, so that we have a greater flexibility with respect to handling search results etc.
ClassTreeFinder(OWLModel, JTree) - Constructor for class edu.stanford.smi.protegex.owl.ui.search.ClassTreeFinder
ClassTreeFinder(OWLModel, JTree, String) - Constructor for class edu.stanford.smi.protegex.owl.ui.search.ClassTreeFinder
ClassTreeNode - Class in edu.stanford.smi.protegex.owl.ui.cls
  Tree node that contains the superclass-subclass relations.
ClassTreeNode(LazyTreeNode, Cls) - Constructor for class edu.stanford.smi.protegex.owl.ui.cls.ClassTreeNode
ClassTreePanel - Interface in edu.stanford.smi.protegex.owl.ui.cls
  An interface for panels that display a class tree.
ClassTreeRoot - Class in edu.stanford.smi.protegex.owl.ui.cls
  Tree Root for the superclass-subclass relationship
ClassTreeRoot(Cls) - Constructor for class edu.stanford.smi.protegex.owl.ui.cls.ClassTreeRoot
ClassTreeRoot(Cls, boolean) - Constructor for class edu.stanford.smi.protegex.owl.ui.cls.ClassTreeRoot
ClassTreeRoot(Collection) - Constructor for class edu.stanford.smi.protegex.owl.ui.cls.ClassTreeRoot
ClassTreeRoot(Collection, boolean) - Constructor for class edu.stanford.smi.protegex.owl.ui.cls.ClassTreeRoot
ClassTreeWithBrowserText - Class in edu.stanford.smi.protegex.owl.ui.cls
ClassTreeWithBrowserText(OWLModel, Action, ClassTreeWithBrowserTextRoot) - Constructor for class edu.stanford.smi.protegex.owl.ui.cls.ClassTreeWithBrowserText
ClassTreeWithBrowserTextNode - Class in edu.stanford.smi.protegex.owl.ui.cls
ClassTreeWithBrowserTextNode(LazyTreeNode, FrameWithBrowserText) - Constructor for class edu.stanford.smi.protegex.owl.ui.cls.ClassTreeWithBrowserTextNode
ClassTreeWithBrowserTextRoot - Class in edu.stanford.smi.protegex.owl.ui.cls
ClassTreeWithBrowserTextRoot(Collection<? extends Cls>, boolean) - Constructor for class edu.stanford.smi.protegex.owl.ui.cls.ClassTreeWithBrowserTextRoot
ClassTreeWithBrowserTextRoot(Cls, boolean) - Constructor for class edu.stanford.smi.protegex.owl.ui.cls.ClassTreeWithBrowserTextRoot
ClassTypeConverterWidget - Class in edu.stanford.smi.protegex.owl.ui.cls
ClassTypeConverterWidget() - Constructor for class edu.stanford.smi.protegex.owl.ui.cls.ClassTypeConverterWidget
cleanup(JComponent, boolean) - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTableTransferHandler
cleanup(JComponent, boolean) - Method in class edu.stanford.smi.protegex.owl.ui.owltable.DefaultOWLTableTransferHandler
cleanup(JComponent, boolean) - Method in class edu.stanford.smi.protegex.owl.ui.owltable.OWLTableTransferHandler
clear() - Method in class edu.stanford.smi.protegex.owl.inference.dig.reasoner.DIGReasonerIdentity
  Clears all of the information in this inference identity object.
clear() - Method in class edu.stanford.smi.protegex.owl.ui.widget.TimePanel
CLEAR_KNOWLEDGE_BASE - Static variable in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGVocabulary.Management
clearAllListeners() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. whatever this does
clearCache() - Method in class edu.stanford.smi.protegex.owl.jena.parser.SuperClsCache
clearCache(String) - Static method in class edu.stanford.smi.protegex.owl.ui.profiles.ProfilesManager
clearErrors() - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.imports.wizard.AbstractImportEntry
clearFiller(OWLQuantifierRestriction) - Method in class edu.stanford.smi.protegex.owl.model.framestore.updater.AllValuesFromRestrictionUpdater
clearFiller(OWLQuantifierRestriction) - Method in class edu.stanford.smi.protegex.owl.model.framestore.updater.QuantifierRestrictionUpdater
clearKnowledgeBase(String) - Method in class edu.stanford.smi.protegex.owl.inference.dig.reasoner.DefaultDIGReasoner
  Clears the knowledge base
clearKnowledgeBase(String) - Method in interface edu.stanford.smi.protegex.owl.inference.dig.reasoner.DIGReasoner
  A helper method that clears the knowledge base
clearKnowledgeBase(ReasonerLogRecord) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.SynchronizeReasonerTask
clearKnowledgeBase(ReasonerLogRecord) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.SynchronizeReasonerTask
clearRepositories() - Method in class edu.stanford.smi.protegex.owl.database.creator.OwlDatabaseCreator
clearRepositories() - Method in class edu.stanford.smi.protegex.owl.database.creator.OwlDatabaseFromFileCreator
clearRepositories() - Method in class edu.stanford.smi.protegex.owl.jena.creator.OwlProjectFromReaderCreator
clearRepositories() - Method in class edu.stanford.smi.protegex.owl.jena.creator.OwlProjectFromStreamCreator
clearRepositories() - Method in class edu.stanford.smi.protegex.owl.jena.creator.OwlProjectFromUriCreator
clearRepositories() - Static method in class edu.stanford.smi.protegex.owl.jena.JenaKnowledgeBaseFactory
clearSelection() - Method in class edu.stanford.smi.protegex.owl.ui.navigation.TabNavigationHistorySelectable
clearSelection() - Method in class edu.stanford.smi.protegex.owl.ui.properties.OWLPropertyHierarchiesPanel
clearSelection() - Method in class edu.stanford.smi.protegex.owl.ui.resourcedisplay.ResourceDisplay
ClientTripleStoreModel - Class in edu.stanford.smi.protegex.owl.server.triplestore
ClientTripleStoreModel(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.server.triplestore.ClientTripleStoreModel
CloneFactory - Class in edu.stanford.smi.protegex.owl.model.util
  A utility class to clone a named class TODO: add methods for copying Properties and Individuals
CloneFactory() - Constructor for class edu.stanford.smi.protegex.owl.model.util.CloneFactory
cloneIt(Iterator) - Static method in class edu.stanford.smi.protegex.owl.jena.Jena
  Just creates a cloning Iterator to avoid concurrent modification exceptions.
cloneOntModel(OntModel) - Static method in class edu.stanford.smi.protegex.owl.jena.Jena
cloneOntModel(OntModel, OntModelSpec) - Static method in class edu.stanford.smi.protegex.owl.jena.Jena
cloneOWLNamedClass(OWLNamedClass) - Static method in class edu.stanford.smi.protegex.owl.model.util.CloneFactory
cloneOWLNamedClass(OWLNamedClass, String) - Static method in class edu.stanford.smi.protegex.owl.model.util.CloneFactory
CloneRuleAction - Class in edu.stanford.smi.protegex.owl.swrl.ui.table
CloneRuleAction(SWRLTable, OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.swrl.ui.table.CloneRuleAction
cloneValues(Collection) - Method in class edu.stanford.smi.protegex.owl.storage.KnowledgeBaseCopier
cloneValues(Collection) - Method in class edu.stanford.smi.protegex.owl.storage.ProtegeSaver
close() - Method in class edu.stanford.smi.protegex.owl.jena.graph.ProtegeGraph
close() - Method in class edu.stanford.smi.protegex.owl.jena.triplestore.JenaMemoryTripleWriter
close() - Method in class edu.stanford.smi.protegex.owl.model.triplestore.DelegatingTripleWriter
close() - Method in interface edu.stanford.smi.protegex.owl.model.triplestore.TripleWriter
  Tells the writer that we're finished.
close(Hierarchy) - Method in class edu.stanford.smi.protegex.owl.ui.cls.HierarchiesPanel
close(Hierarchy) - Method in interface edu.stanford.smi.protegex.owl.ui.cls.HierarchyManager
close() - Method in class edu.stanford.smi.protegex.owl.ui.matrix.MatrixTable
  Programmatically closes the container of this table, which is usually a ResultsPanel.
close() - Method in class edu.stanford.smi.protegex.owl.ui.results.ResultsPanel
closeComboBox() - Method in class edu.stanford.smi.protegex.owl.ui.code.SymbolTextArea
closeInferredHierarchies() - Method in class edu.stanford.smi.protegex.owl.ui.cls.HierarchiesPanel
CLOSEPAR - Static variable in interface edu.stanford.smi.protegex.owl.model.classparser.compact.CompactParserConstants
CLOSEPAR - Static variable in interface edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxParserConstants
CLOSEPAR - Static variable in interface edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParserConstants
closeResultsPanel(ResultsPanel) - Static method in class edu.stanford.smi.protegex.owl.ui.results.ResultsPanelManager
  Deprecated. use the other version instead
closeResultsPanel(OWLModel, ResultsPanel) - Static method in class edu.stanford.smi.protegex.owl.ui.results.ResultsPanelManager
CLOSESQPAR - Static variable in interface edu.stanford.smi.protegex.owl.model.classparser.compact.CompactParserConstants
CLOSESQPAR - Static variable in interface edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxParserConstants
CLOSESQPAR - Static variable in interface edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParserConstants
CLOSURE_CLOSED - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
CLOSURE_OPEN - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
ClosureAxiomFactory - Class in edu.stanford.smi.protegex.owl.model.util
  A utility for creating and detecting closure axioms.
ClosureAxiomFactory() - Constructor for class edu.stanford.smi.protegex.owl.model.util.ClosureAxiomFactory
CLS1_EQUIVALENT_TO_CLS2 - Static variable in interface edu.stanford.smi.protegex.owl.inference.protegeowl.ProtegeOWLReasoner
  Deprecated.
CLS1_SUBSUMED_BY_CLS2 - Static variable in interface edu.stanford.smi.protegex.owl.inference.protegeowl.ProtegeOWLReasoner
  Deprecated.
CLS1_SUBSUMES_CLS2 - Static variable in interface edu.stanford.smi.protegex.owl.inference.protegeowl.ProtegeOWLReasoner
  Deprecated.
clsCreated(KnowledgeBaseEvent) - Method in class edu.stanford.smi.protegex.owl.model.event.ModelAdapter
  Deprecated.
clsCreated(KnowledgeBaseEvent) - Method in interface edu.stanford.smi.protegex.owl.model.event.ProtegeKnowledgeBaseListener
  Deprecated.
clsDeleted(KnowledgeBaseEvent) - Method in class edu.stanford.smi.protegex.owl.model.event.ModelAdapter
  Deprecated.
clsDeleted(KnowledgeBaseEvent) - Method in interface edu.stanford.smi.protegex.owl.model.event.ProtegeKnowledgeBaseListener
  Deprecated.
clsesPanel - Variable in class edu.stanford.smi.protegex.owl.ui.cls.OWLClassesTab
CODE_MENU - Static variable in class edu.stanford.smi.protegex.owl.ui.actions.AbstractOWLModelAction
CODE_MENU - Static variable in class edu.stanford.smi.protegex.owl.ui.widget.OWLUI
  Deprecated. use constant from AbstractOWLModelAction
COL_ACTIVATED - Static variable in class edu.stanford.smi.protegex.owl.ui.testing.OWLTestSettingsTableModel
COL_ALIAS - Static variable in interface edu.stanford.smi.protegex.owl.ui.metadatatab.NamespacesTableColumns
COL_CLS - Static variable in class edu.stanford.smi.protegex.owl.ui.subsumption.ChangedClassesTableModel
COL_COUNT - Static variable in class edu.stanford.smi.protegex.owl.swrl.ui.table.SWRLTableModel
COL_COUNT - Static variable in class edu.stanford.smi.protegex.owl.ui.components.literaltable.LiteralTableModel
COL_COUNT - Static variable in interface edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTableConstants
COL_COUNT - Static variable in class edu.stanford.smi.protegex.owl.ui.metadatatab.imports.ImportsTableModel
COL_COUNT - Static variable in interface edu.stanford.smi.protegex.owl.ui.metadatatab.NamespacesTableColumns
COL_COUNT - Static variable in class edu.stanford.smi.protegex.owl.ui.metadatatab.prefixes.PrefixesTableModel
COL_COUNT - Static variable in class edu.stanford.smi.protegex.owl.ui.subsumption.ChangedClassesTableModel
COL_COUNT - Static variable in class edu.stanford.smi.protegex.owl.ui.testing.OWLTestSettingsTableModel
COL_ENABLED - Static variable in class edu.stanford.smi.protegex.owl.swrl.ui.table.SWRLTableModel
COL_EXPRESSION - Static variable in class edu.stanford.smi.protegex.owl.swrl.ui.table.SWRLTableModel
COL_EXPRESSION - Static variable in interface edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTableConstants
COL_FILLER - Static variable in class edu.stanford.smi.protegex.owl.ui.classform.component.property.PropertyFormTableModel
  The index of the column holding the classes/fillers.
COL_IMPORTED - Static variable in interface edu.stanford.smi.protegex.owl.ui.metadatatab.NamespacesTableColumns
COL_LANG - Static variable in class edu.stanford.smi.protegex.owl.ui.components.literaltable.LiteralTableModel
COL_MULTIPLICITY - Static variable in interface edu.stanford.smi.protegex.owl.ui.clsproperties.RDFPropertiesTableColumns
COL_NAME - Static variable in class edu.stanford.smi.protegex.owl.swrl.ui.table.SWRLTableModel
COL_NAME - Static variable in class edu.stanford.smi.protegex.owl.ui.matrix.MatrixTableModel
COL_NAME - Static variable in class edu.stanford.smi.protegex.owl.ui.testing.OWLTestSettingsTableModel
COL_NAMESPACE - Static variable in interface edu.stanford.smi.protegex.owl.ui.metadatatab.NamespacesTableColumns
COL_NAMESPACE - Static variable in class edu.stanford.smi.protegex.owl.ui.metadatatab.prefixes.PrefixesTableModel
COL_PREFIX - Static variable in class edu.stanford.smi.protegex.owl.ui.matrix.MatrixTableModel
COL_PREFIX - Static variable in interface edu.stanford.smi.protegex.owl.ui.metadatatab.NamespacesTableColumns
COL_PREFIX - Static variable in class edu.stanford.smi.protegex.owl.ui.metadatatab.prefixes.PrefixesTableModel
COL_PROPERTY - Static variable in interface edu.stanford.smi.protegex.owl.ui.clsproperties.RDFPropertiesTableColumns
COL_PROPERTY - Static variable in class edu.stanford.smi.protegex.owl.ui.components.triples.TriplesTableModel
COL_RANGE - Static variable in interface edu.stanford.smi.protegex.owl.ui.clsproperties.RDFPropertiesTableColumns
COL_TEXT - Static variable in class edu.stanford.smi.protegex.owl.ui.subsumption.ChangedClassesTableModel
COL_TYPE - Static variable in class edu.stanford.smi.protegex.owl.ui.components.literaltable.LiteralTableModel
COL_URI - Static variable in class edu.stanford.smi.protegex.owl.ui.metadatatab.imports.ImportsTableModel
COL_VALUE - Static variable in class edu.stanford.smi.protegex.owl.ui.components.literaltable.LiteralTableModel
COL_VALUE - Static variable in class edu.stanford.smi.protegex.owl.ui.components.triples.TriplesTableModel
COLCOUNT - Static variable in interface edu.stanford.smi.protegex.owl.ui.clsproperties.RDFPropertiesTableColumns
CollapseTreeAction - Class in edu.stanford.smi.protegex.owl.ui.actions
CollapseTreeAction() - Constructor for class edu.stanford.smi.protegex.owl.ui.actions.CollapseTreeAction
COLLECTION - Static variable in interface edu.stanford.smi.protegex.owl.model.RDFNames
CollectionResultReasonerTask - Interface in edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Aug 17, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm

  Implemented by tasks that return a `Collection` as a result.
CollectionResultReasonerTask - Interface in edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Aug 17, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm

  Implemented by tasks that return a `Collection` as a result.
column - Variable in class edu.stanford.smi.protegex.owl.model.classparser.compact.JavaCharStream
column - Variable in class edu.stanford.smi.protegex.owl.model.classparser.dl.JavaCharStream
column - Variable in class edu.stanford.smi.protegex.owl.model.classparser.manchester.JavaCharStream
ColumnNames - Static variable in class edu.stanford.smi.protegex.owl.swrl.model.SQWRLNames
COLUMNS - Static variable in class edu.stanford.smi.protegex.owl.ui.metrics.lang.DLExpressivityTableModel
COMMENT - Static variable in interface edu.stanford.smi.protegex.owl.model.RDFSNames.Slot
commitChanges() - Method in class edu.stanford.smi.protegex.owl.swrl.ui.widget.SWRLRuleSlotWidget
commitChanges() - Method in class edu.stanford.smi.protegex.owl.ui.resourcedisplay.InstanceNameComponent
commitChanges() - Method in class edu.stanford.smi.protegex.owl.ui.widget.ExternalResourceURLWidget
CompactOWLClassDisplay - Class in edu.stanford.smi.protegex.owl.model.classdisplay.compact
CompactOWLClassDisplay() - Constructor for class edu.stanford.smi.protegex.owl.model.classdisplay.compact.CompactOWLClassDisplay
CompactOWLClassParser - Class in edu.stanford.smi.protegex.owl.model.classparser.compact
CompactOWLClassParser() - Constructor for class edu.stanford.smi.protegex.owl.model.classparser.compact.CompactOWLClassParser
CompactParserConstants - Interface in edu.stanford.smi.protegex.owl.model.classparser.compact
CompactParserTokenManager - Class in edu.stanford.smi.protegex.owl.model.classparser.compact
CompactParserTokenManager(JavaCharStream) - Constructor for class edu.stanford.smi.protegex.owl.model.classparser.compact.CompactParserTokenManager
CompactParserTokenManager(JavaCharStream, int) - Constructor for class edu.stanford.smi.protegex.owl.model.classparser.compact.CompactParserTokenManager
CompactParserUtil - Class in edu.stanford.smi.protegex.owl.model.classparser.compact
CompactParserUtil() - Constructor for class edu.stanford.smi.protegex.owl.model.classparser.compact.CompactParserUtil
compare(RDFResource, RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.ResourceComparator
compare(Object, Object) - Method in class edu.stanford.smi.protegex.owl.ui.resourceselection.ResourceIgnoreCaseComparator
compare(ChangedClassItem, ChangedClassItem) - Method in class edu.stanford.smi.protegex.owl.ui.subsumption.ChangedClassesChangeComporator
compare(Object, Object) - Method in class edu.stanford.smi.protegex.owl.writer.rdfxml.rdfwriter.NativeValueComparator
compare(RDFResource, RDFResource) - Method in class edu.stanford.smi.protegex.owl.writer.rdfxml.rdfwriter.NativeWriterComparator
compareTo(Object) - Method in class edu.stanford.smi.protegex.owl.javacode.RDFPropertyAtClassCode
compareTo(Object) - Method in class edu.stanford.smi.protegex.owl.javacode.RDFPropertyCode
compareTo(RDFSLiteral) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFSLiteral
compareTo(Object) - Method in class edu.stanford.smi.protegex.owl.ui.actions.ResourceAction
compareTo(Object) - Method in class edu.stanford.smi.protegex.owl.ui.clsproperties.PropertyTreeNode
compareTo(Object) - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTableItem
  Sorts according to the following order: 1) Equivalent classes > superclasses > inherited superclasses 2) NamedClasses by name 3) Anonymous classes > restrictions 4) Restrictions by slot name
COMPLEMENT_CLASS - Static variable in interface edu.stanford.smi.protegex.owl.model.OWLNames.Cls
Complement_Classes - Static variable in class edu.stanford.smi.protegex.owl.ui.profiles.OWLProfiles
COMPLEMENT_OF - Static variable in interface edu.stanford.smi.protegex.owl.model.OWLNames.Slot
component - Variable in class edu.stanford.smi.protegex.owl.ui.components.AddResourceAction
ComponentDragger - Class in edu.stanford.smi.protegex.owl.ui.code
  An object that can be used to drag and drop a Component in its parent.
ComponentDragger(Component) - Constructor for class edu.stanford.smi.protegex.owl.ui.code.ComponentDragger
ComponentUtil - Class in edu.stanford.smi.protegex.owl.ui.components
ComponentUtil() - Constructor for class edu.stanford.smi.protegex.owl.ui.components.ComponentUtil
ComponentUtil.DatatypeCellRenderer - Class in edu.stanford.smi.protegex.owl.ui.components
ComponentUtil.DatatypeCellRenderer() - Constructor for class edu.stanford.smi.protegex.owl.ui.components.ComponentUtil.DatatypeCellRenderer
computeEquivalentConcepts(ReasonerTaskListener) - Method in class edu.stanford.smi.protegex.owl.inference.dig.DefaultProtegeDIGReasoner
computeEquivalentConcepts() - Method in class edu.stanford.smi.protegex.owl.inference.dig.DefaultProtegeDIGReasoner
computeEquivalentConcepts(ReasonerTaskListener) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.DefaultProtegeOWLReasoner
computeEquivalentConcepts(ReasonerTaskListener) - Method in interface edu.stanford.smi.protegex.owl.inference.protegeowl.ProtegeOWLReasoner
  Deprecated.
computeEquivalentConcepts() - Method in class edu.stanford.smi.protegex.owl.inference.reasoner.AbstractProtegeReasoner
computeEquivalentConcepts() - Method in interface edu.stanford.smi.protegex.owl.inference.reasoner.ProtegeReasoner
  This method queries the reasoner the equivalent classes for each class in the ontology, and updates protege-owl with the information.
computeInconsistentConcepts(ReasonerTaskListener) - Method in class edu.stanford.smi.protegex.owl.inference.dig.DefaultProtegeDIGReasoner
computeInconsistentConcepts() - Method in class edu.stanford.smi.protegex.owl.inference.dig.DefaultProtegeDIGReasoner
computeInconsistentConcepts(ReasonerTaskListener) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.DefaultProtegeOWLReasoner
computeInconsistentConcepts(ReasonerTaskListener) - Method in interface edu.stanford.smi.protegex.owl.inference.protegeowl.ProtegeOWLReasoner
  Deprecated. This method queries the reasoner for the consistency of all classes in the ontology, and updates protege-owl with the information.
computeInconsistentConcepts() - Method in class edu.stanford.smi.protegex.owl.inference.reasoner.AbstractProtegeReasoner
computeInconsistentConcepts() - Method in interface edu.stanford.smi.protegex.owl.inference.reasoner.ProtegeReasoner
  This method queries the reasoner for the consistency of all classes in the ontology, and updates protege-owl with the information.
ComputeIndividualsBelongingToClassAction - Class in edu.stanford.smi.protegex.owl.inference.ui.action
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Aug 17, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
ComputeIndividualsBelongingToClassAction() - Constructor for class edu.stanford.smi.protegex.owl.inference.ui.action.ComputeIndividualsBelongingToClassAction
computeInferredHierarchy(ReasonerTaskListener) - Method in class edu.stanford.smi.protegex.owl.inference.dig.DefaultProtegeDIGReasoner
computeInferredHierarchy() - Method in class edu.stanford.smi.protegex.owl.inference.dig.DefaultProtegeDIGReasoner
computeInferredHierarchy(ReasonerTaskListener) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.DefaultProtegeOWLReasoner
computeInferredHierarchy(ReasonerTaskListener) - Method in interface edu.stanford.smi.protegex.owl.inference.protegeowl.ProtegeOWLReasoner
  Deprecated. For each named class in the ontology, this method queries the reasoner to obtain its inferred superclasses.
computeInferredHierarchy() - Method in class edu.stanford.smi.protegex.owl.inference.reasoner.AbstractProtegeReasoner
computeInferredHierarchy() - Method in interface edu.stanford.smi.protegex.owl.inference.reasoner.ProtegeReasoner
  For each named class in the ontology, this method queries the reasoner to obtain its inferred superclasses.
computeInferredIndividualTypes(ReasonerTaskListener) - Method in class edu.stanford.smi.protegex.owl.inference.dig.DefaultProtegeDIGReasoner
computeInferredIndividualTypes() - Method in class edu.stanford.smi.protegex.owl.inference.dig.DefaultProtegeDIGReasoner
computeInferredIndividualTypes(ReasonerTaskListener) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.DefaultProtegeOWLReasoner
computeInferredIndividualTypes(ReasonerTaskListener) - Method in interface edu.stanford.smi.protegex.owl.inference.protegeowl.ProtegeOWLReasoner
  Deprecated.
computeInferredIndividualTypes() - Method in class edu.stanford.smi.protegex.owl.inference.reasoner.AbstractProtegeReasoner
computeInferredIndividualTypes() - Method in interface edu.stanford.smi.protegex.owl.inference.reasoner.ProtegeReasoner
  This method queries the reasoner for the types of all individuals in the ontology, and updates protege-owl with the information.
ComputeInferredTypesAction - Class in edu.stanford.smi.protegex.owl.inference.ui.action
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Aug 28, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
ComputeInferredTypesAction() - Constructor for class edu.stanford.smi.protegex.owl.inference.ui.action.ComputeInferredTypesAction
ComputeSingleIndividualTypesAction - Class in edu.stanford.smi.protegex.owl.inference.ui.action
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Aug 17, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
ComputeSingleIndividualTypesAction() - Constructor for class edu.stanford.smi.protegex.owl.inference.ui.action.ComputeSingleIndividualTypesAction
CONCEPT_SET - Static variable in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGVocabulary.Response
CONCRETE - Static variable in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGVocabulary.Language
ConditionsCellRenderer - Class in edu.stanford.smi.protegex.owl.ui.matrix.cls
ConditionsCellRenderer() - Constructor for class edu.stanford.smi.protegex.owl.ui.matrix.cls.ConditionsCellRenderer
ConditionsTable - Class in edu.stanford.smi.protegex.owl.ui.conditions
  A JTable used to display a class definition.
ConditionsTable(OWLModel, ConditionsTableModel) - Constructor for class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTable
ConditionsTableConstants - Interface in edu.stanford.smi.protegex.owl.ui.conditions
  Constants for the ConditionsTableModel.
ConditionsTableItem - Class in edu.stanford.smi.protegex.owl.ui.conditions
  An object representing an entry in the table.
ConditionsTableItem(RDFSClass, int, OWLNamedClass, OWLIntersectionClass, boolean) - Constructor for class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTableItem
ConditionsTableModel - Class in edu.stanford.smi.protegex.owl.ui.conditions
  The TableModel used by the AssertedConditionsWidget.
ConditionsTableModel(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTableModel
  Constructs a new ConditionsTableModel with default superslot.
ConditionsTableModel(Slot) - Constructor for class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTableModel
  Constructs a new ConditionsTableModel with customized superslot.
ConditionsTableModel(OWLNamedClass, Slot) - Constructor for class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTableModel
  Constructs a new ConditionsTableModel for a given Cls.
ConditionsTableTransferHandler - Class in edu.stanford.smi.protegex.owl.ui.conditions
  An OWLTableTransferHandler that does not assume that the class maintain their rows after changing something.
ConditionsTableTransferHandler(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTableTransferHandler
ConditionsWidget - Class in edu.stanford.smi.protegex.owl.ui.conditions
  A MultiWidgetPropertyWidget showing asserted and inferred conditions.
ConditionsWidget() - Constructor for class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsWidget
configureEnclosingScrollPane() - Method in class edu.stanford.smi.protegex.owl.ui.owltable.SymbolTable
  Overloaded to prevent the creation of the table header.
configureEnclosingScrollPane() - Method in class edu.stanford.smi.protegex.owl.ui.properties.domain.OWLDomainTable
  Overloaded to prevent the creation of the table header.
ConfigureTabsAction - Class in edu.stanford.smi.protegex.owl.ui.projectview
  An Action to configure the tabs in the current ProjectView.
ConfigureTabsAction(ProjectView) - Constructor for class edu.stanford.smi.protegex.owl.ui.projectview.ConfigureTabsAction
ConfigureTabsPanel - Class in edu.stanford.smi.protegex.owl.ui.projectview
  Configure the tab in the application.
ConfigureTabsPanel(ProjectView) - Constructor for class edu.stanford.smi.protegex.owl.ui.projectview.ConfigureTabsPanel
confirmSaveAndReload() - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
  Deprecated. use the version with project parameter instead
confirmSaveAndReload(Project) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
connect() - Method in class edu.stanford.smi.protegex.owl.repository.impl.DatabaseRepository
CONSTRAINT_CHECKING - Static variable in class edu.stanford.smi.protegex.owl.ui.widget.OWLUI
CONSTRAINTS - Static variable in interface edu.stanford.smi.protegex.owl.model.ProtegeNames.Slot
CONTAINER - Static variable in interface edu.stanford.smi.protegex.owl.model.RDFSNames.Cls
contains(Object) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFList
contains(Object) - Method in interface edu.stanford.smi.protegex.owl.model.RDFList
  Checks whether a given value is among the entries in this list.
contains(Triple) - Method in class edu.stanford.smi.protegex.owl.model.triplestore.impl.TripleStoreImpl
contains(RDFResource, RDFProperty, Object) - Method in class edu.stanford.smi.protegex.owl.model.triplestore.impl.TripleStoreImpl
contains(Triple) - Method in interface edu.stanford.smi.protegex.owl.model.triplestore.TripleStore
contains(RDFResource, RDFProperty, Object) - Method in interface edu.stanford.smi.protegex.owl.model.triplestore.TripleStore
contains(URI) - Method in class edu.stanford.smi.protegex.owl.repository.impl.AbstractLocalRepository
contains(URI) - Method in class edu.stanford.smi.protegex.owl.repository.impl.DatabaseRepository
contains(URI) - Method in class edu.stanford.smi.protegex.owl.repository.impl.DublinCoreDLVersionRedirectRepository
contains(URI) - Method in class edu.stanford.smi.protegex.owl.repository.impl.ForcedURLRetrievalRepository
contains(URI) - Method in class edu.stanford.smi.protegex.owl.repository.impl.FTPRepository
contains(URI) - Method in class edu.stanford.smi.protegex.owl.repository.impl.HTTPRepository
contains(URI) - Method in interface edu.stanford.smi.protegex.owl.repository.Repository
  Determines if the repository contains the specified ontology.
Contains - Static variable in class edu.stanford.smi.protegex.owl.swrl.model.SQWRLNames
CONTAINS - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLConstants.BuiltIns
  Deprecated.
CONTAINS - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.CoreBuiltIns
contains(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.ui.properties.OWLSubpropertyPane
CONTAINS - Static variable in interface edu.stanford.smi.protegex.owl.ui.search.finder.Find
contains(Frame) - Method in class edu.stanford.smi.protegex.owl.ui.search.FindUsageTableItem
contains(Cls) - Method in class edu.stanford.smi.protegex.owl.ui.subsumption.ChangedClassesPanel
contains(Cls) - Method in class edu.stanford.smi.protegex.owl.ui.subsumption.ChangedClassesTableModel
CONTAINS_IGNORE_CASE - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLConstants.BuiltIns
  Deprecated.
CONTAINS_IGNORE_CASE - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.CoreBuiltIns
containsAnonymousClass(Collection) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
containsFrame(String) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not needed
convert(Object) - Method in class edu.stanford.smi.protegex.owl.model.framestore.OWLFrameFactoryInvocationHandler
  Deprecated.
convertCollection(Collection) - Method in class edu.stanford.smi.protegex.owl.model.framestore.OWLFrameFactoryInvocationHandler
  Deprecated.
convertEquivalentClsIntoSuperClses(RDFSClass, RDFSClass) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
ConvertIndividualToClassAction - Class in edu.stanford.smi.protegex.owl.ui.actions
ConvertIndividualToClassAction() - Constructor for class edu.stanford.smi.protegex.owl.ui.actions.ConvertIndividualToClassAction
convertInstance(Instance) - Method in class edu.stanford.smi.protegex.owl.model.framestore.OWLFrameFactoryInvocationHandler
  Deprecated.
convertOntModel() - Method in class edu.stanford.smi.protegex.owl.jena.JenaDLConverter
convertRDFSLiteralsToInternalFormat(Collection) - Static method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
convertRDFSLiteralToInternalFormat(Object) - Static method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
convertSuperClsIntoEquivalentCls(OWLNamedClass, RDFSClass) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
convertSuperClsIntoEquivalentCls(OWLNamedClass, RDFSClass, RDFSClass) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
convertSyntax(JTextComponent) - Method in class edu.stanford.smi.protegex.owl.swrl.ui.code.SWRLSyntaxConverter
convertSyntax(JTextComponent) - Method in class edu.stanford.smi.protegex.owl.ui.code.OWLSyntaxConverter
convertSyntax(JTextComponent) - Method in interface edu.stanford.smi.protegex.owl.ui.code.SyntaxConverter
ConvertToDatatypePropertyAction - Class in edu.stanford.smi.protegex.owl.ui.properties.actions
ConvertToDatatypePropertyAction() - Constructor for class edu.stanford.smi.protegex.owl.ui.properties.actions.ConvertToDatatypePropertyAction
ConvertToDefinedClassAction - Class in edu.stanford.smi.protegex.owl.ui.cls
ConvertToDefinedClassAction() - Constructor for class edu.stanford.smi.protegex.owl.ui.cls.ConvertToDefinedClassAction
ConvertToObjectPropertyAction - Class in edu.stanford.smi.protegex.owl.ui.properties.actions
ConvertToObjectPropertyAction() - Constructor for class edu.stanford.smi.protegex.owl.ui.properties.actions.ConvertToObjectPropertyAction
convertToOWLTestResult(WarningMessageLogRecord) - Static method in class edu.stanford.smi.protegex.owl.inference.protegeowl.log.ReasonerLoggerUtil
ConvertToPrimitiveClassAction - Class in edu.stanford.smi.protegex.owl.ui.cls
  A ResourceAction to convert a primitive class into a defined class.
ConvertToPrimitiveClassAction() - Constructor for class edu.stanford.smi.protegex.owl.ui.cls.ConvertToPrimitiveClassAction
convertTypedAnnotationPropertiesIntoUntyped(OntModel) - Static method in class edu.stanford.smi.protegex.owl.jena.Jena
convertValueListToRDFLiterals(OWLModel, Collection) - Static method in class edu.stanford.smi.protegex.owl.util.OWLFrameStoreUtils
copy(KnowledgeBase, Map, boolean) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeInstance
  Deprecated. not needed
copyAnnotations(Instance, Instance) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
copyFacetValuesIntoNamedClass(RDFSNamedClass, OWLRestriction) - Method in class edu.stanford.smi.protegex.owl.model.framestore.updater.AllValuesFromRestrictionUpdater
copyFacetValuesIntoNamedClass(RDFSNamedClass, OWLRestriction) - Method in class edu.stanford.smi.protegex.owl.model.framestore.updater.CardinalityRestrictionUpdater
copyFacetValuesIntoNamedClass(RDFSNamedClass, OWLRestriction) - Method in class edu.stanford.smi.protegex.owl.model.framestore.updater.HasValueRestrictionUpdater
copyFacetValuesIntoNamedClass(RDFSNamedClass, OWLRestriction) - Method in interface edu.stanford.smi.protegex.owl.model.framestore.updater.RestrictionUpdater
copyFacetValuesIntoNamedClses() - Method in class edu.stanford.smi.protegex.owl.model.framestore.FacetUpdateFrameStore
copyFacetValuesIntoNamedClses() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
  Copies all facet values of restriction superclasses into their named subclasses and thus makes sure that both values are synchronized.
copyFacetValuesIntoProperties() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
copyImps(OWLModel) - Method in class edu.stanford.smi.protegex.owl.swrl.model.SWRLFactory
copyMultipleSlotValues(RDFResource, RDFResource) - Method in class edu.stanford.smi.protegex.owl.model.util.ResourceCopier
CopyPropertyValueAction - Class in edu.stanford.smi.protegex.owl.ui.actions
CopyPropertyValueAction(String, RDFProperty, Object, Collection) - Constructor for class edu.stanford.smi.protegex.owl.ui.actions.CopyPropertyValueAction
CopyPropertyValueAction(String, RDFProperty, Object, Collection, String) - Constructor for class edu.stanford.smi.protegex.owl.ui.actions.CopyPropertyValueAction
CopyPropertyValueAction(String, RDFProperty, Object, Collection, String, Icon) - Constructor for class edu.stanford.smi.protegex.owl.ui.actions.CopyPropertyValueAction
copyPropertyValues(Resource, Resource) - Static method in class edu.stanford.smi.protegex.owl.jena.Jena
COPYRIGHT - Static variable in class edu.stanford.smi.protegex.owl.jena.JenaOWLModel
copySlotValues(RDFResource, RDFResource, Slot) - Method in class edu.stanford.smi.protegex.owl.model.util.ResourceCopier
copyValueListToRDFLiterals(OWLModel, Collection) - Static method in class edu.stanford.smi.protegex.owl.util.OWLFrameStoreUtils
COS - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLConstants.BuiltIns
  Deprecated.
COS - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.CoreBuiltIns
couldBeClass(OWLModel, String) - Method in class edu.stanford.smi.protegex.owl.swrl.ui.code.SWRLResourceNameMatcher
couldBeClass(OWLModel, String) - Method in class edu.stanford.smi.protegex.owl.ui.code.OWLResourceNameMatcher
couldBeDatatype(OWLModel, String) - Method in class edu.stanford.smi.protegex.owl.swrl.ui.code.SWRLResourceNameMatcher
couldBeDatatype(OWLModel, String) - Method in class edu.stanford.smi.protegex.owl.ui.code.OWLResourceNameMatcher
couldBeIndividual(OWLModel, String) - Method in class edu.stanford.smi.protegex.owl.swrl.ui.code.SWRLResourceNameMatcher
couldBeIndividual(OWLModel, String) - Method in class edu.stanford.smi.protegex.owl.ui.code.OWLResourceNameMatcher
couldBeProperty(OWLModel, String) - Method in class edu.stanford.smi.protegex.owl.swrl.ui.code.SWRLResourceNameMatcher
couldBeProperty(OWLModel, String) - Method in class edu.stanford.smi.protegex.owl.ui.code.OWLResourceNameMatcher
Count - Static variable in class edu.stanford.smi.protegex.owl.swrl.model.SQWRLNames
CountAggregateFunction - Static variable in class edu.stanford.smi.protegex.owl.swrl.model.SQWRLNames
CountDistinct - Static variable in class edu.stanford.smi.protegex.owl.swrl.model.SQWRLNames
CountDistinctAggregateFunction - Static variable in class edu.stanford.smi.protegex.owl.swrl.model.SQWRLNames
create(Collection) - Method in class edu.stanford.smi.protegex.owl.database.creator.AbstractOwlDatabaseCreator
create(Collection) - Method in class edu.stanford.smi.protegex.owl.database.creator.OwlDatabaseCreator
create(Collection) - Method in class edu.stanford.smi.protegex.owl.database.creator.OwlDatabaseFromFileCreator
create(OWLModel, Class<? extends X>, String) - Static method in class edu.stanford.smi.protegex.owl.javacode.ProtegeJavaMapping
create(Collection) - Method in class edu.stanford.smi.protegex.owl.jena.creator.NewOwlProjectCreator
create(Collection) - Method in class edu.stanford.smi.protegex.owl.jena.creator.OwlProjectFromReaderCreator
create(Collection) - Method in class edu.stanford.smi.protegex.owl.jena.creator.OwlProjectFromStreamCreator
create(Collection) - Method in class edu.stanford.smi.protegex.owl.jena.creator.OwlProjectFromUriCreator
create(Collection) - Method in class edu.stanford.smi.protegex.owl.model.factory.AbstractOwlProjectCreator
create(Class) - Method in class edu.stanford.smi.protegex.owl.model.framestore.OWLFrameStoreManager
create(OWLModel, Object) - Static method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFSLiteral
create(OWLModel, String, RDFSDatatype) - Static method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFSLiteral
create(OWLModel, String, String) - Static method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFSLiteral
create(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.model.query.SPARQLQueryResults
  Creates QueryResults from a given query string (which should already include prefix declarations).
create(RDFSClass, int) - Static method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTableItem
create(LazyTreeNode, RDFSClass, ExplorerFilter) - Static method in class edu.stanford.smi.protegex.owl.ui.explorer.ExplorerTreeNodeFactory
create(RDFResource) - Static method in class edu.stanford.smi.protegex.owl.ui.search.FindUsagePanel
Create_DatatypeProperty - Static variable in class edu.stanford.smi.protegex.owl.ui.profiles.OWLProfiles
CREATE_IMPORTED_TRIPLESTORE - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
Create_ObjectProperty - Static variable in class edu.stanford.smi.protegex.owl.ui.profiles.OWLProfiles
CREATE_OVERLAY - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
Create_OWLClass - Static variable in class edu.stanford.smi.protegex.owl.ui.profiles.OWLProfiles
Create_OWLIndividual - Static variable in class edu.stanford.smi.protegex.owl.ui.profiles.OWLProfiles
CREATE_UNTYPED_RESOURCES - Static variable in class edu.stanford.smi.protegex.owl.jena.parser.ProtegeOWLParser
createActiveImportedTripleStore(NarrowFrameStore) - Method in class edu.stanford.smi.protegex.owl.model.triplestore.impl.TripleStoreModelImpl
createActiveImportedTripleStore(NarrowFrameStore) - Method in interface edu.stanford.smi.protegex.owl.model.triplestore.TripleStoreModel
  A low level method that creates and adds a new TripleStore to implement imports.
createActiveImportedTripleStore(NarrowFrameStore) - Method in class edu.stanford.smi.protegex.owl.server.triplestore.ClientTripleStoreModel
createAddAction(ClassDescriptionTable) - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.ClassDescriptionWidget
createAddAction(ClassDescriptionTable) - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.DisjointClassesWidget
createAddAction(ClassDescriptionTable) - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.PropertiesSuperclassesWidget
createAddAction(boolean) - Method in class edu.stanford.smi.protegex.owl.ui.components.multiresource.MultiResourceComponent
createAdditionalAnonymousSuperclassesOfIncludedClass(OWLNamedClass) - Method in class edu.stanford.smi.protegex.owl.jena.creator.JenaCreator
createAll() - Method in class edu.stanford.smi.protegex.owl.javacode.JavaCodeGenerator
createAllConceptNamesQuery(Document, String) - Method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DefaultDIGTranslator
createAllConceptNamesQuery(Document, String) - Method in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGTranslator
  Creates a DIG Query that will return a list of the primitive concepts in the knowledge base.
createAllIndividualsQuery(Document, String) - Method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DefaultDIGTranslator
createAllIndividualsQuery(Document, String) - Method in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGTranslator
  Create a DIG Query that will return a list of the individuals in the knowledge base.
createAllInterfaces() - Method in class edu.stanford.smi.protegex.owl.emf.EMFGenerator
createAllPropertyNamesQuery(Document, String) - Method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DefaultDIGTranslator
createAllPropertyNamesQuery(Document, String) - Method in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGTranslator
  Creates a DIG Query that will return a list of properties in the knowledge base.
createAncestorConceptsQuery(Document, String, RDFSClass) - Method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DefaultDIGTranslator
createAncestorConceptsQuery(Document, String, RDFSClass) - Method in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGTranslator
  Creates a query that asks for the ancestor concepts of a given concept, this includes all super concepts (not just direct ones).
createAncestorPropertiesQuery(Document, String, OWLProperty) - Method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DefaultDIGTranslator
createAncestorPropertiesQuery(Document, String, OWLProperty) - Method in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGTranslator
  Creates a query that asks for the ancestor properties (i.e.
createAndEditRow() - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTable
createAnnotationOWLDatatypeProperty(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
createAnnotationOWLDatatypeProperty(String) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
createAnnotationOWLObjectProperty(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
createAnnotationOWLObjectProperty(String) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
createAnnotationProperty(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
createAnnotationProperty(String) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Creates a simple owl:AnnotationProperty.
createAnonymousDatatype(RDFSDatatype) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFSDatatypeFactory
createAnonymousDatatype(RDFSDatatype) - Method in interface edu.stanford.smi.protegex.owl.model.RDFSDatatypeFactory
createAnonymousInstance() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFSNamedClass
createAnonymousInstance() - Method in interface edu.stanford.smi.protegex.owl.model.RDFSNamedClass
  Creates an instance of this class so that Protege will recognize this as an "anonymous" node in the RDF rendering.
createARP(TripleStore) - Method in class edu.stanford.smi.protegex.owl.jena.parser.ProtegeOWLParser
createAsksDocument(String) - Method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DefaultDIGTranslator
createAsksDocument(String) - Method in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGTranslator
  A convenience method that creates an XML DIG Asks document.
createAssertedClsesPane() - Method in class edu.stanford.smi.protegex.owl.ui.cls.OWLClassesTab
createAssertedInstancesListPanel() - Method in class edu.stanford.smi.protegex.owl.ui.individuals.OWLIndividualsTab
createAtomList() - Method in class edu.stanford.smi.protegex.owl.swrl.model.SWRLFactory
createAtomList(Collection<SWRLAtom>) - Method in class edu.stanford.smi.protegex.owl.swrl.model.SWRLFactory
createBuiltin(String) - Method in class edu.stanford.smi.protegex.owl.swrl.model.SWRLFactory
createBuiltinAtom(SWRLBuiltin, Iterator<RDFObject>) - Method in class edu.stanford.smi.protegex.owl.swrl.model.SWRLFactory
createBuiltinAtom(SWRLBuiltin, RDFList) - Method in class edu.stanford.smi.protegex.owl.swrl.model.SWRLFactory
createChildObjects() - Method in class edu.stanford.smi.protegex.owl.ui.explorer.ExplorerTreeNode
createChildObjects() - Method in class edu.stanford.smi.protegex.owl.ui.explorer.LeafExplorerTreeNode
createChildObjects() - Method in class edu.stanford.smi.protegex.owl.ui.explorer.OWLLogicalClassTreeNode
createChildObjects() - Method in class edu.stanford.smi.protegex.owl.ui.explorer.OWLQuantifierRestrictionTreeNode
createChildObjects() - Method in class edu.stanford.smi.protegex.owl.ui.explorer.RDFSNamedClassTreeNode
createClassAtom(RDFSNamedClass, RDFResource) - Method in class edu.stanford.smi.protegex.owl.swrl.model.SWRLFactory
createClassHierarchyTree() - Method in class edu.stanford.smi.protegex.owl.ui.dialogs.SelectResourcesPanel
CreateClassSuggestion - Class in edu.stanford.smi.protegex.owl.ui.clsdesc.manchester
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Sep 7, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
CreateClassSuggestion(OWLModel, String) - Constructor for class edu.stanford.smi.protegex.owl.ui.clsdesc.manchester.CreateClassSuggestion
CreateClassUsingMetaclassAction - Class in edu.stanford.smi.protegex.owl.ui.cls
CreateClassUsingMetaclassAction() - Constructor for class edu.stanford.smi.protegex.owl.ui.cls.CreateClassUsingMetaclassAction
createClone() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
createClone(Cls) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
  Deprecated. use CloneFactory and ResourceCopier instead
createClone(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
  Deprecated. use CloneFactory and ResourceCopier instead
createClone() - Method in interface edu.stanford.smi.protegex.owl.model.RDFSClass
  Creates a copy of anonymous classes which contain a completely new expression tree.
createClone() - Method in class edu.stanford.smi.protegex.owl.swrl.model.impl.DefaultSWRLImp
createClone() - Method in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLImp
createClone(ResourceAction) - Static method in class edu.stanford.smi.protegex.owl.ui.actions.ResourceActionManager
createClone() - Method in class edu.stanford.smi.protegex.owl.ui.cls.AssertedClassesPanel
createClone(OWLNamedClass) - Static method in class edu.stanford.smi.protegex.owl.ui.cls.CreateCloneAction
createClone(OWLNamedClass, String) - Static method in class edu.stanford.smi.protegex.owl.ui.cls.CreateCloneAction
createClone() - Method in interface edu.stanford.smi.protegex.owl.ui.cls.Hierarchy
  Creates a clone of this, i.e.
createClone() - Method in class edu.stanford.smi.protegex.owl.ui.existential.ExistentialTreePanel
createClone() - Method in class edu.stanford.smi.protegex.owl.ui.explorer.ExplorerTreePanel
createClone() - Method in class edu.stanford.smi.protegex.owl.ui.subsumption.AssertedSubsumptionTreePanel
createClone() - Method in class edu.stanford.smi.protegex.owl.ui.subsumption.HiddenClassesPanel
createClone() - Method in class edu.stanford.smi.protegex.owl.ui.subsumption.InferredSubsumptionTreePanel
CreateCloneAction - Class in edu.stanford.smi.protegex.owl.ui.cls
CreateCloneAction() - Constructor for class edu.stanford.smi.protegex.owl.ui.cls.CreateCloneAction
createCls(FrameID, Collection) - Method in class edu.stanford.smi.protegex.owl.model.factory.OWLJavaFactory
  Creates instances of the corresponding subclass of DefaultCls if one of the metaclasses of the directTypes list is an OWL metaclass.
createCls(FrameID, Collection, Collection, boolean) - Method in class edu.stanford.smi.protegex.owl.model.framestore.OWLFrameStore
createCls(FrameID, Collection, Collection, boolean) - Method in class edu.stanford.smi.protegex.owl.model.framestore.OwlSubclassFrameStore
createCls(FrameID, Collection, Collection, boolean) - Method in class edu.stanford.smi.protegex.owl.model.framestore.TypeUpdateFrameStore
createCls(FrameID, Collection, Collection, boolean) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
createCls(String, Collection) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
createCls(String, Collection, Cls) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
createCls(String, Collection, Cls, boolean) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not needed in OWL
createCls(FrameID, Collection, Collection, boolean) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not needed in OWL
createCls(String, Cls) - Method in class edu.stanford.smi.protegex.owl.storage.KnowledgeBaseCopier
createCls(String, Cls) - Method in class edu.stanford.smi.protegex.owl.storage.ProtegeSaver
createClsBrowserHeader() - Method in class edu.stanford.smi.protegex.owl.ui.cls.AssertedClassesPanel
createClses() - Method in class edu.stanford.smi.protegex.owl.storage.KnowledgeBaseCopier
createClses() - Method in class edu.stanford.smi.protegex.owl.storage.OWL2OWLCopier
createClsesLabeledComponent(KnowledgeBase, Collection) - Method in class edu.stanford.smi.protegex.owl.ui.dialogs.SelectResourcesPanel
createComponent(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.ui.metadata.AnnotationsWidget
createComponent(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.ui.widget.AbstractPropertyValuesWidget
createComponent(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.ui.widget.DataRangeFieldWidget
createComponent(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.ui.widget.MultiLiteralWidget
createComponent(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.ui.widget.MultiResourceWidget
createComponent(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.ui.widget.RDFListWidget
createComponent(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.ui.widget.RDFSSubClassOfWidget
createComponent(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.ui.widget.SingleLiteralAreaWidget
createComponent(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.ui.widget.SingleLiteralWidget
createComponent(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.ui.widget.SingleResourceWidget
createConceptConsistencyLogRecord(RDFSClass, boolean, ReasonerLogRecord) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.log.ReasonerLogRecordFactory
createConfigureAction() - Method in class edu.stanford.smi.protegex.owl.ui.individuals.AssertedInstancesListPanel
createCopyAction() - Method in class edu.stanford.smi.protegex.owl.ui.individuals.AssertedInstancesListPanel
createCreateAction(ClassDescriptionTable) - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.ClassDescriptionWidget
createCreateAction(ClassDescriptionTable) - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.DisjointClassesWidget
createCreateAction(ClassDescriptionTable) - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.PropertiesSuperclassesWidget
createCreateAction() - Method in class edu.stanford.smi.protegex.owl.ui.components.multiresource.MultiResourceComponent
createCreateAction() - Method in class edu.stanford.smi.protegex.owl.ui.components.superclasses.RDFSSubClassOfComponent
createCreateAction() - Method in class edu.stanford.smi.protegex.owl.ui.individuals.AssertedInstancesListPanel
createCreateAction() - Method in class edu.stanford.smi.protegex.owl.ui.subsumption.EditableSubsumptionTreePanel
createCreateAnonymousAction() - Method in class edu.stanford.smi.protegex.owl.ui.individuals.AssertedInstancesListPanel
createCreateProjectWizardPage(CreateProjectWizard, boolean) - Method in class edu.stanford.smi.protegex.owl.database.CreateOWLDatabaseFromFileProjectPlugin
createCreateProjectWizardPage(CreateProjectWizard, boolean) - Method in class edu.stanford.smi.protegex.owl.database.CreateOWLDatabaseProjectPlugin
createCreateProjectWizardPage(CreateProjectWizard, boolean) - Method in class edu.stanford.smi.protegex.owl.jena.OWLFilesCreateProjectPlugin
createCreateProjectWizardPage(CreateProjectWizard, boolean) - Method in class edu.stanford.smi.protegex.owl.storage.ProtegeFromOWLFilesCreateProjectPlugin
createCustomActions(ClassDescriptionTable) - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.ClassDescriptionWidget
createCustomActions(ClassDescriptionTable) - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.DisjointClassesWidget
createCustomActions(ClassDescriptionTable) - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.PropertiesSuperclassesWidget
createCustomer(String) - Method in class edu.stanford.smi.protegex.owlx.examples.javaDemo.model.MyFactory
createDataRange(OWLDataRange, OntModel) - Static method in class edu.stanford.smi.protegex.owl.jena.creator.JenaCreator
createDataRangeAtom(OWLDataRange, RDFObject) - Method in class edu.stanford.smi.protegex.owl.swrl.model.SWRLFactory
createDatatype(RDFSDatatype, String) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFSDatatypeFactory
createDatatype(RDFSDatatype, String) - Method in interface edu.stanford.smi.protegex.owl.model.RDFSDatatypeFactory
createDatatypeComboBox(OWLModel) - Static method in class edu.stanford.smi.protegex.owl.ui.components.ComponentUtil
CreateDatatypePropertySuggestion - Class in edu.stanford.smi.protegex.owl.ui.clsdesc.manchester
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Sep 7, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
CreateDatatypePropertySuggestion(OWLModel, String) - Constructor for class edu.stanford.smi.protegex.owl.ui.clsdesc.manchester.CreateDatatypePropertySuggestion
createDatavaluedPropertyAtom(OWLDatatypeProperty, RDFResource, RDFObject) - Method in class edu.stanford.smi.protegex.owl.swrl.model.SWRLFactory
createDefaultLanguageListener() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
createDefaultValue(RDFResource, RDFProperty) - Method in class edu.stanford.smi.protegex.owl.ui.editors.DateTimeValueEditor
createDefaultValue(RDFResource, RDFProperty) - Method in class edu.stanford.smi.protegex.owl.ui.editors.DateValueEditor
createDefaultValue(RDFResource, RDFProperty) - Method in interface edu.stanford.smi.protegex.owl.ui.editors.PropertyValueEditor
  Creates a default value for a given predicate at a given subject.
createDefaultValue(RDFResource, RDFProperty) - Method in class edu.stanford.smi.protegex.owl.ui.editors.StringValueEditor
createDefaultValue(RDFResource, RDFProperty) - Method in class edu.stanford.smi.protegex.owl.ui.editors.TimeValueEditor
CreateDefinedClass - Class in edu.stanford.smi.protegex.owlx.examples
  Creates a "defined" class, i.e.
CreateDefinedClass() - Constructor for class edu.stanford.smi.protegex.owlx.examples.CreateDefinedClass
createDeleteAction() - Method in class edu.stanford.smi.protegex.owl.ui.individuals.AssertedInstancesListPanel
createDeleteAction() - Method in class edu.stanford.smi.protegex.owl.ui.subsumption.EditableSubsumptionTreePanel
createDescendantConceptsQuery(Document, String, RDFSClass) - Method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DefaultDIGTranslator
createDescendantConceptsQuery(Document, String, RDFSClass) - Method in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGTranslator
  Creates a query that asks for the descendant concepts of a given concept.
createDescendantPropertiesQuery(Document, String, OWLProperty) - Method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DefaultDIGTranslator
createDescendantPropertiesQuery(Document, String, OWLProperty) - Method in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGTranslator
  Creates a query that asks for the descendant properties (i.e.
createDifferentFromWidget() - Method in class edu.stanford.smi.protegex.owl.ui.metadata.OWLMetadataWidget
  Deprecated.
createDifferentIndividualsAtom(RDFResource, RDFResource) - Method in class edu.stanford.smi.protegex.owl.swrl.model.SWRLFactory
createDIGDocument(String, String) - Method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DefaultDIGTranslator
createDIGDocument(String) - Method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DefaultDIGTranslator
createDIGDocument(String, String) - Method in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGTranslator
  Creates an XML DIG Document, whose root contains the appropriate namespaces etc.
createDIGDocument(String) - Method in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGTranslator
  Creates an XML DIG Document, whose root contains the appropriate name spaces etc.
createDIGReasonerExceptionLogRecord(DIGReasonerException, ReasonerLogRecord) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.log.ReasonerLogRecordFactory
createDirectAllInstanceComboBox() - Method in class edu.stanford.smi.protegex.owl.ui.dialogs.SelectResourcesPanel
createDirectAllInstanceComboBox() - Method in class edu.stanford.smi.protegex.owl.ui.dialogs.SelectResourcesWithBrowserTextPanel
createDirectInstance(String) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeCls
  Deprecated.
createDirectSubConceptsQuery(Document, String, RDFSClass) - Method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DefaultDIGTranslator
createDirectSubConceptsQuery(Document, String, RDFSClass) - Method in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGTranslator
  Creates a query that asks for the direct sub concepts of a given concept.
createDirectSubPropertiesQuery(Document, String, OWLProperty) - Method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DefaultDIGTranslator
createDirectSubPropertiesQuery(Document, String, OWLProperty) - Method in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGTranslator
  Creates a query that asks for the direct sub properties of a given property.
createDirectSuperConceptsQuery(Document, String, RDFSClass) - Method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DefaultDIGTranslator
createDirectSuperConceptsQuery(Document, String, RDFSClass[]) - Method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DefaultDIGTranslator
createDirectSuperConceptsQuery(Document, String, RDFSClass) - Method in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGTranslator
  Creates a query that asks for the direct super concepts of a given concept.
createDirectSuperConceptsQuery(Document, String, RDFSClass[]) - Method in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGTranslator
  Creates a query that asks for the direct super concepts of an intersection of classes.
createDirectSuperPropertiesQuery(Document, String, OWLProperty) - Method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DefaultDIGTranslator
createDirectSuperPropertiesQuery(Document, String, OWLProperty) - Method in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGTranslator
  Creates a query that asks for the direct super properties of a given property.
createDirectTypesList() - Method in class edu.stanford.smi.protegex.owl.ui.individuals.OWLIndividualsTab
createDisjointQuery(Document, String, RDFSClass, RDFSClass) - Method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DefaultDIGTranslator
createDisjointQuery(Document, String, RDFSClass, RDFSClass) - Method in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGTranslator
  Creates a query that asks if one concept is disjoint with another concept.
createEquivalentConceptsQuery(Document, String, RDFSClass) - Method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DefaultDIGTranslator
createEquivalentConceptsQuery(Document, String, RDFSClass) - Method in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGTranslator
  Creates a query that asks for the concepts that are equivalent (i.e.
createErrorMessageLogRecord(String, ReasonerLogRecord) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.log.ReasonerLogRecordFactory
createExtraWidgets() - Method in class edu.stanford.smi.protegex.owl.ui.metadata.OWLMetadataWidget
  Deprecated. Can be overloaded by subclasses to add extra widgets after the labels, or to suppress sameAs and differentFrom.
createExtraWidgets() - Method in class edu.stanford.smi.protegex.owl.ui.metadata.RDFSNamedClassMetadataWidget
createFacet(String) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. no OWL equivalent
createFacet(String, Cls) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
createFacet(String, Cls, boolean) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. no OWL equivalent
createFacetOverrides(Cls) - Method in class edu.stanford.smi.protegex.owl.storage.KnowledgeBaseCopier
createFacetOverrides(Cls) - Method in class edu.stanford.smi.protegex.owl.storage.OWL2OWLCopier
createFactoryClass() - Method in class edu.stanford.smi.protegex.owl.javacode.JavaCodeGenerator
createFindResult(RDFResource, Slot, String) - Static method in class edu.stanford.smi.protegex.owl.ui.search.finder.FindResult
createFrameFactory() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
createFrameFromClassId(int, FrameID) - Method in class edu.stanford.smi.protegex.owl.model.factory.OWLJavaFactory
createFrameFromClassId(int, FrameID) - Method in class edu.stanford.smi.protegex.owl.swrl.model.factory.SWRLJavaFactory
createFrameStoreManager() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
createFrameWithBrowserText(Frame) - Method in class edu.stanford.smi.protegex.owl.ui.cls.ClassTreeWithBrowserTextNode
createFrameWithType(OWLModel, FrameID, Cls, TripleStore) - Static method in class edu.stanford.smi.protegex.owl.jena.parser.FrameCreatorUtility
createGoodCustomer(String) - Method in class edu.stanford.smi.protegex.owlx.examples.javaDemo.model.MyFactory
createHeaderIcon() - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.ClassDescriptionWidget
createHeaderIcon() - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.DisjointClassesWidget
createHeaderIcon() - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.PropertiesSuperclassesWidget
createHelpPanel(String, String) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.OWLUI
createHelpPanel(String, String, int) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.OWLUI
createHelpPanel(String, String, int, Icon) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.OWLUI
createImp() - Method in class edu.stanford.smi.protegex.owl.swrl.model.SWRLFactory
createImp(String) - Method in class edu.stanford.smi.protegex.owl.swrl.model.SWRLFactory
createImp(String, String) - Method in class edu.stanford.smi.protegex.owl.swrl.model.SWRLFactory
createImp(SWRLAtom, List<SWRLAtom>) - Method in class edu.stanford.smi.protegex.owl.swrl.model.SWRLFactory
createImp(SWRLAtomList, SWRLAtomList) - Method in class edu.stanford.smi.protegex.owl.swrl.model.SWRLFactory
createImplementation(RDFSNamedClass) - Method in class edu.stanford.smi.protegex.owl.javacode.JavaCodeGenerator
CreateImportedTripleStorePanel - Class in edu.stanford.smi.protegex.owl.ui.metadatatab.imports
CreateImportedTripleStorePanel(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.ui.metadatatab.imports.CreateImportedTripleStorePanel
createImportLocalCopy(OWLModel, URI, File) - Static method in class edu.stanford.smi.protegex.owl.repository.util.RepositoryUtil
createImpWithGivenName(String) - Method in class edu.stanford.smi.protegex.owl.swrl.model.SWRLFactory
createIncludedProjectsList() - Method in class edu.stanford.smi.protegex.owl.jena.JenaKnowledgeBaseSourcesEditor
createIndividual(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
createIndividual(OWLModel, URI) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
createIndividualInstanceOfConceptQuery(Document, String, RDFIndividual, RDFSClass) - Method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DefaultDIGTranslator
createIndividualInstanceOfConceptQuery(Document, String, RDFIndividual, RDFSClass) - Method in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGTranslator
  Creates a query that asks if an individual is an instance (member of) a given class.
createIndividualOfClass(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
createIndividualOfClass(OWLModel, String, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
createIndividualOfClass(OWLModel, OWLClass) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
createIndividualOfClass(OWLModel, OWLClass, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
createIndividualPropertyAtom(OWLObjectProperty, RDFResource, RDFResource) - Method in class edu.stanford.smi.protegex.owl.swrl.model.SWRLFactory
CreateIndividualSuggestion - Class in edu.stanford.smi.protegex.owl.ui.clsdesc.manchester
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Sep 7, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
CreateIndividualSuggestion(OWLModel, String) - Constructor for class edu.stanford.smi.protegex.owl.ui.clsdesc.manchester.CreateIndividualSuggestion
createIndividualTypesQuery(Document, String, RDFIndividual) - Method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DefaultDIGTranslator
createIndividualTypesQuery(Document, String, RDFIndividual) - Method in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGTranslator
  Creates a query that asks for the types (concepts) that an individual belongs to.
createInferredInstancesListPanel() - Method in class edu.stanford.smi.protegex.owl.ui.individuals.OWLIndividualsTab
createInformationMessageLogRecord(String, ReasonerLogRecord) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.log.ReasonerLogRecordFactory
createInherited(RDFSClass, OWLNamedClass) - Static method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTableItem
createInstance(FrameID, Class<? extends Instance>) - Method in class edu.stanford.smi.protegex.owl.model.factory.OWLJavaFactory
createInstance(String, Cls) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
createInstance(String, Collection) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
createInstance(FrameID, Collection, boolean) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
createInstance(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
createInstance(String, Cls) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
createInstance(String, Cls, boolean) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not needed
createInstance(FrameID, Cls, boolean) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not needed
createInstance(FrameID, Collection, boolean) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not needed
createInstance(String) - Method in interface edu.stanford.smi.protegex.owl.model.RDFSClass
  Creates a new instance of this class.
createInstance(String, Cls) - Method in class edu.stanford.smi.protegex.owl.storage.KnowledgeBaseCopier
createInstance(String, Cls) - Method in class edu.stanford.smi.protegex.owl.storage.ProtegeSaver
createInstanceLabeledComponent() - Method in class edu.stanford.smi.protegex.owl.ui.dialogs.SelectResourcesPanel
createInstanceList() - Method in class edu.stanford.smi.protegex.owl.ui.dialogs.SelectResourcesWithBrowserTextPanel
createInstancesOfConceptQuery(Document, String, RDFSClass) - Method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DefaultDIGTranslator
createInstancesOfConceptQuery(Document, String, RDFSClass) - Method in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGTranslator
  Creates a query that asks for the instances (individuals belonging to) a given concept.
createInterface(RDFSNamedClass) - Method in class edu.stanford.smi.protegex.owl.emf.EMFGenerator
createInterface(RDFSNamedClass) - Method in class edu.stanford.smi.protegex.owl.javacode.JavaCodeGenerator
createInterfaceCode(PrintWriter, RDFSNamedClass) - Method in class edu.stanford.smi.protegex.owl.emf.EMFGenerator
createInterfacePropertyCode(PrintWriter, RDFPropertyAtClassCode) - Method in class edu.stanford.smi.protegex.owl.javacode.JavaCodeGenerator
createInverseSlot(Slot, Collection) - Static method in class edu.stanford.smi.protegex.owl.ui.properties.actions.CreateSubpropertyAction
createJenaOWLModel() - Static method in class edu.stanford.smi.protegex.owl.ProtegeOWL
  Creates a new, empty JenaOWLModel.
createJenaOWLModel(String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
createJenaOWLModel() - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
createJenaOWLModelFromInputStream(InputStream) - Static method in class edu.stanford.smi.protegex.owl.ProtegeOWL
createJenaOWLModelFromReader(Reader) - Static method in class edu.stanford.smi.protegex.owl.ProtegeOWL
createJenaOWLModelFromURI(String) - Static method in class edu.stanford.smi.protegex.owl.ProtegeOWL
createJFileChooser(String, String) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.OWLUI
createKnowledgeBase(Collection) - Method in class edu.stanford.smi.protegex.owl.database.OWLDatabaseKnowledgeBaseFactory
createKnowledgeBase() - Method in class edu.stanford.smi.protegex.owl.inference.dig.reasoner.DefaultDIGReasoner
  A helper method that asks the reasoner to create a new knowledgebase.
createKnowledgeBase() - Method in interface edu.stanford.smi.protegex.owl.inference.dig.reasoner.DIGReasoner
  A helper method that asks the inference to create a new knowledgebase.
createKnowledgeBase(Collection) - Method in class edu.stanford.smi.protegex.owl.jena.JenaKnowledgeBaseFactory
createKnowledgeBaseSourcesEditor(String, PropertyList) - Method in class edu.stanford.smi.protegex.owl.jena.JenaKnowledgeBaseFactory
createLangCellEditor(OWLModel, JTable) - Static method in class edu.stanford.smi.protegex.owl.ui.components.ComponentUtil
createLanguageComboBox(OWLModel) - Static method in class edu.stanford.smi.protegex.owl.ui.components.ComponentUtil
createLanguageComboBox(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.ui.components.ComponentUtil
createListFinder() - Method in class edu.stanford.smi.protegex.owl.ui.dialogs.SelectResourcesWithBrowserTextPanel
createLogicalClass(OWLModel, FrameID, String, TripleStore) - Static method in class edu.stanford.smi.protegex.owl.jena.parser.LogicalClassCreatorUtility
createMainIcon(Cls) - Method in class edu.stanford.smi.protegex.owl.ui.restrictions.RestrictionKindRenderer
createMainSplitPane() - Method in class edu.stanford.smi.protegex.owl.ui.cls.OWLClassesTab
createMainText(Cls) - Method in class edu.stanford.smi.protegex.owl.ui.restrictions.RestrictionKindRenderer
createMatrixTable(MatrixTableModel) - Method in class edu.stanford.smi.protegex.owl.ui.matrix.MatrixPanel
createModel(OWLModel) - Static method in class edu.stanford.smi.protegex.owl.jena.graph.JenaModelFactory
  Creates a new Jena Model from a given OWLModel.
createModel(TripleStore, boolean) - Method in class edu.stanford.smi.protegex.owl.ui.forms.AbsoluteFormsGenerator
  Creates a Jena Model that can be saved etc.
CreateNamedClasses - Class in edu.stanford.smi.protegex.owlx.examples
CreateNamedClasses() - Constructor for class edu.stanford.smi.protegex.owlx.examples.CreateNamedClasses
createNestedWidgets() - Method in class edu.stanford.smi.protegex.owl.ui.cls.AbstractClassDefinitionWidget
createNestedWidgets() - Method in class edu.stanford.smi.protegex.owl.ui.cls.ClassAnnotationsAndDescriptionWidget
createNestedWidgets() - Method in class edu.stanford.smi.protegex.owl.ui.cls.LogicClassDefinitionWidget
createNestedWidgets() - Method in class edu.stanford.smi.protegex.owl.ui.cls.PropertiesClassDefinitionWidget
createNestedWidgets() - Method in class edu.stanford.smi.protegex.owl.ui.cls.SwitchableClassDefinitionWidget
createNestedWidgets() - Method in class edu.stanford.smi.protegex.owl.ui.metadata.NameDocumentationWidget
  Deprecated.
createNestedWidgets() - Method in class edu.stanford.smi.protegex.owl.ui.metadata.OWLMetadataWidget
  Deprecated.
createNestedWidgets() - Method in class edu.stanford.smi.protegex.owl.ui.widget.MultiWidgetPropertyWidget
  Adds the user-defined tabs to the widget.
createNew(int) - Static method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTableItem
createNewProject(KnowledgeBaseFactory) - Method in class edu.stanford.smi.protegex.owl.database.CreateOWLDatabaseProjectPlugin
createNewProject(KnowledgeBaseFactory) - Method in class edu.stanford.smi.protegex.owl.jena.OWLFilesCreateProjectPlugin
createNewResourceName(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
createNewResourceName(String) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Creates a unique name from a given local name prefix.
createNewResourceName(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
createNewResourceURI(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
createNode(Object) - Method in class edu.stanford.smi.protegex.owl.ui.cls.ClassTreeNode
createNode(Object) - Method in class edu.stanford.smi.protegex.owl.ui.cls.ClassTreeRoot
createNode(Object) - Method in class edu.stanford.smi.protegex.owl.ui.cls.ClassTreeWithBrowserTextNode
createNode(Object) - Method in class edu.stanford.smi.protegex.owl.ui.cls.ClassTreeWithBrowserTextRoot
createNode(Object) - Method in class edu.stanford.smi.protegex.owl.ui.cls.HiddenClassTreeNode
createNode(Object) - Method in class edu.stanford.smi.protegex.owl.ui.cls.HiddenClassTreeRoot
createNode(Object) - Method in class edu.stanford.smi.protegex.owl.ui.existential.ExistentialTreeNode
createNode(Object) - Method in class edu.stanford.smi.protegex.owl.ui.existential.ExistentialTreeRoot
createNode(Object) - Method in class edu.stanford.smi.protegex.owl.ui.explorer.ExplorerTreeNode
createNode(Object) - Method in class edu.stanford.smi.protegex.owl.ui.explorer.ExplorerTreeRoot
createNode(Object) - Method in class edu.stanford.smi.protegex.owl.ui.importstree.ImportsTreeNode
createNode(Object) - Method in class edu.stanford.smi.protegex.owl.ui.importstree.ImportsTreeRoot
createNode(Object) - Method in class edu.stanford.smi.protegex.owl.ui.properties.OWLPropertySubpropertyRoot
createNode(Object) - Method in class edu.stanford.smi.protegex.owl.ui.subsumption.SubsumptionTreeNode
createNode(Object) - Method in class edu.stanford.smi.protegex.owl.ui.subsumption.SubsumptionTreeRoot
createObject() - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.manchester.AbstractNamedObjectCreationSuggestion
createObject() - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.manchester.CreateClassSuggestion
createObject() - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.manchester.CreateDatatypePropertySuggestion
createObject() - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.manchester.CreateIndividualSuggestion
createObject() - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.manchester.CreateObjectPropertySuggestion
createObject() - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.manchester.CreateSubClassSuggestion
CreateObjectPropertySuggestion - Class in edu.stanford.smi.protegex.owl.ui.clsdesc.manchester
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Sep 7, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
CreateObjectPropertySuggestion(OWLModel, String) - Constructor for class edu.stanford.smi.protegex.owl.ui.clsdesc.manchester.CreateObjectPropertySuggestion
createOntModel() - Method in class edu.stanford.smi.protegex.owl.jena.creator.JenaCreator
createOntModel(OntModelSpec) - Method in class edu.stanford.smi.protegex.owl.jena.creator.JenaCreator
createOntModel(OWLModel) - Static method in class edu.stanford.smi.protegex.owl.jena.protege2jena.Protege2Jena
createOntModel(OWLModel, Collection) - Static method in class edu.stanford.smi.protegex.owl.jena.protege2jena.Protege2Jena
createOntModel(OWLModel, Collection, Map) - Static method in class edu.stanford.smi.protegex.owl.jena.protege2jena.Protege2Jena
createOntModel(OWLModel, OntModelSpec, Collection) - Static method in class edu.stanford.smi.protegex.owl.jena.protege2jena.Protege2Jena
createOntModel(OWLModel, OntModelSpec, Collection, Map) - Static method in class edu.stanford.smi.protegex.owl.jena.protege2jena.Protege2Jena
createOntModelWithoutOWLFullModel() - Method in class edu.stanford.smi.protegex.owl.jena.creator.JenaCreator
createOntologyBrowserHeader() - Method in class edu.stanford.smi.protegex.owl.ui.importstree.ImportsTreePanel
createOntRepository(OWLModel, String) - Method in class edu.stanford.smi.protegex.owl.repository.factory.RepositoryFactory
createOWLAllDifferent() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
createOWLAllDifferent() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
createOWLAllValuesFrom() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
createOWLAllValuesFrom(RDFProperty, RDFResource) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
createOWLAllValuesFrom(RDFProperty, RDFSLiteral[]) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
createOWLAllValuesFrom() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
createOWLAllValuesFrom(RDFProperty, RDFResource) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
createOWLAllValuesFrom(RDFProperty, RDFSLiteral[]) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
createOWLAnnotationProperty(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
createOWLAnnotationProperty(OWLModel, URI) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
createOWLCardinality() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
createOWLCardinality(RDFProperty, int) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
createOWLCardinality(RDFProperty, int, RDFSClass) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
createOWLCardinality() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
createOWLCardinality(RDFProperty, int) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
createOWLCardinality(RDFProperty, int, RDFSClass) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
createOWLClassDescription(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
createOWLComplementClass() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
createOWLComplementClass(RDFSClass) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
createOWLComplementClass() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
createOWLComplementClass(RDFSClass) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
CreateOWLDatabaseFromFileProjectPlugin - Class in edu.stanford.smi.protegex.owl.database
CreateOWLDatabaseFromFileProjectPlugin() - Constructor for class edu.stanford.smi.protegex.owl.database.CreateOWLDatabaseFromFileProjectPlugin
CreateOWLDatabaseProjectPlugin - Class in edu.stanford.smi.protegex.owl.database
CreateOWLDatabaseProjectPlugin() - Constructor for class edu.stanford.smi.protegex.owl.database.CreateOWLDatabaseProjectPlugin
CreateOWLDatabaseProjectPlugin(String) - Constructor for class edu.stanford.smi.protegex.owl.database.CreateOWLDatabaseProjectPlugin
createOWLDataPropertyUsingLabelAnnotation(OWLModel, String, String, String, boolean) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
createOWLDataRange() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
createOWLDataRange(RDFSLiteral[]) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
createOWLDataRange() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Creates an empty owl:DataRange.
createOWLDataRange(RDFSLiteral[]) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Creates a new owl:DataRange consisting of a given set of values.
createOWLDatatypeProperty(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
createOWLDatatypeProperty(String, OWLNamedClass) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
createOWLDatatypeProperty(String, RDFSDatatype) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
createOWLDatatypeProperty(String, RDFSLiteral[]) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
createOWLDatatypeProperty(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
createOWLDatatypeProperty(String) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Creates a new OWLDatatypeProperty (with default settings, e.g.
createOWLDatatypeProperty(String, OWLNamedClass) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Creates a new OWLDatatypeProperty with a given rdf:type as metaclass.
createOWLDatatypeProperty(String, RDFSDatatype) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Creates a new OWLDatatypeProperty with a given RDFSDatatype as range.
createOWLDatatypeProperty(String, RDFSLiteral[]) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
createOWLDatatypeProperty(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
createOWLDatatypeProperty(OWLModel, URI) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
createOWLEnumeratedClass() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
createOWLEnumeratedClass(Collection) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
createOWLEnumeratedClass() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
createOWLEnumeratedClass(Collection) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
createOWLEnumeratedCls(OWLModel, String, TripleStore) - Static method in class edu.stanford.smi.protegex.owl.jena.parser.FrameCreatorUtility
createOWLFrameRenderer() - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTable
createOWLFrameRenderer() - Method in class edu.stanford.smi.protegex.owl.ui.owltable.OWLTable
createOWLFrameRenderer() - Method in class edu.stanford.smi.protegex.owl.ui.owltable.SymbolTable
createOWLHasValue() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
createOWLHasValue(RDFProperty, Object) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
createOWLHasValue() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
createOWLHasValue(RDFProperty, Object) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Creates a new OWLHasValue for a given Slot.
createOWLIndividual(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLNamedClass
createOWLIndividual(String) - Method in interface edu.stanford.smi.protegex.owl.model.OWLNamedClass
  Creates a new individual of this (assuming this is not a metaclass).
createOWLIndividual(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
createOWLIndividual(OWLModel, URI) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
createOWLIndividual(OWLModel) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
createOWLIndividualsLabledComponent() - Method in class edu.stanford.smi.protegex.owl.ui.dialogs.SelectResourcesPanel
createOWLIndividualWithRDFSLabel(OWLModel, String, String, String, boolean) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
createOWLInstanceLogRecord(RDFResource, ReasonerLogRecord) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.log.ReasonerLogRecordFactory
createOWLIntersectionClass() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
createOWLIntersectionClass(Collection) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
createOWLIntersectionClass() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
createOWLIntersectionClass(Collection) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
createOWLMaxCardinality() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
createOWLMaxCardinality(RDFProperty, int) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
createOWLMaxCardinality(RDFProperty, int, RDFSClass) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
createOWLMaxCardinality() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
createOWLMaxCardinality(RDFProperty, int) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
createOWLMaxCardinality(RDFProperty, int, RDFSClass) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
createOWLMinCardinality() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
createOWLMinCardinality(RDFProperty, int) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
createOWLMinCardinality(RDFProperty, int, RDFSClass) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
createOWLMinCardinality() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
createOWLMinCardinality(RDFProperty, int) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
createOWLMinCardinality(RDFProperty, int, RDFSClass) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
createOWLNamedClass(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
createOWLNamedClass(String, boolean) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
createOWLNamedClass(String, OWLNamedClass) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
createOWLNamedClass(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
createOWLNamedClass(String) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
createOWLNamedClass(String, boolean) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
createOWLNamedClass(String, OWLNamedClass) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Creates a new named OWL class with a given metaclass, which must be a subclass of owl:Class.
createOWLNamedClass(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
createOWLNamedClass(OWLModel, URI) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
createOWLNamedClass(OWLModel) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
createOWLNamedClassWithRDFSLabel(OWLModel, String, String, String, boolean) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
createOWLNamedSubclass(String, OWLNamedClass) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
createOWLNamedSubclass(String, OWLNamedClass) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
createOWLObjectProperty(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
createOWLObjectProperty(String, OWLNamedClass) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
createOWLObjectProperty(String, Collection) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
createOWLObjectProperty(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
createOWLObjectProperty(String) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Creates a new OWLObjectProperty.
createOWLObjectProperty(String, OWLNamedClass) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
createOWLObjectProperty(String, Collection) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
createOWLObjectProperty(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
createOWLObjectProperty(OWLModel, URI) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
createOWLObjectProperty(OWLModel) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
createOWLObjectPropertyUsingLabelAnnotation(OWLModel, String, String, String, boolean) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
createOWLOntology(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
createOWLOntology(String, String) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
  Deprecated.
createOWLOntology(String) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Deprecated. developers should not need to create an owl ontology. There is a rename method in OWLUtils.
createOWLOntology(String, String) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Deprecated. use the other createOWLOntology method instead
CreateOWLProjectFromFilePlugin - Class in edu.stanford.smi.protegex.owl.jena
CreateOWLProjectFromFilePlugin() - Constructor for class edu.stanford.smi.protegex.owl.jena.CreateOWLProjectFromFilePlugin
createOWLPropertyList(OWLModel, Resource, PropertyList) - Static method in class edu.stanford.smi.protegex.owl.ui.forms.OWLWidgetPropertyListUtil
createOWLPropertyLogRecord(RDFProperty, ReasonerLogRecord) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.log.ReasonerLogRecordFactory
createOWLSomeValuesFrom() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
createOWLSomeValuesFrom(RDFProperty, RDFResource) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
createOWLSomeValuesFrom(RDFProperty, RDFSLiteral[]) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
createOWLSomeValuesFrom() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
createOWLSomeValuesFrom(RDFProperty, RDFSLiteral[]) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
createOWLSomeValuesFrom(RDFProperty, RDFResource) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
createOWLUnionClass() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
createOWLUnionClass(Collection) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
createOWLUnionClass() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
createOWLUnionClass(Collection) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
createPanes() - Method in class edu.stanford.smi.protegex.owl.ui.cls.AssertedClassesPanel
createPopupMenu() - Method in class edu.stanford.smi.protegex.owl.swrl.ui.table.SWRLTable
createPopupMenu() - Method in class edu.stanford.smi.protegex.owl.ui.cls.OWLSubclassPane
createPopupMenu() - Method in class edu.stanford.smi.protegex.owl.ui.components.multiresource.MultiResourceList
createPopupMenu() - Method in class edu.stanford.smi.protegex.owl.ui.components.singleresource.SingleResourceComponent
createPopupMenu(String) - Method in class edu.stanford.smi.protegex.owl.ui.components.triples.TriplesTable
createPopupMenu() - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTable
createPopupMenu(Cls) - Method in class edu.stanford.smi.protegex.owl.ui.existential.ExistentialTreePanel
createPopupMenu(RDFSClass) - Method in class edu.stanford.smi.protegex.owl.ui.explorer.ExplorerTreePanel
createPopupMenu() - Method in class edu.stanford.smi.protegex.owl.ui.owltable.SymbolTable
createPopupMenu(Cls) - Method in class edu.stanford.smi.protegex.owl.ui.subsumption.SubsumptionTreePanel
createPrefixDeclarations(OWLModel) - Static method in class edu.stanford.smi.protegex.owl.model.query.SPARQLQueryResults
  Creates the SPARQL PREFIX and BASE declarations for a given OWLModel.
createPrefixForNamespace(String) - Method in class edu.stanford.smi.protegex.owl.writer.xml.XMLWriterNamespaceManager
createProduct(String) - Method in class edu.stanford.smi.protegex.owlx.examples.javaDemo.model.MyFactory
createProfile(String) - Static method in class edu.stanford.smi.protegex.owl.ui.profiles.ProfilesManager
createProject(File, Collection) - Method in class edu.stanford.smi.protegex.owl.jena.CreateOWLProjectFromFilePlugin
CreatePropertyAction - Class in edu.stanford.smi.protegex.owl.ui.clsproperties
CreatePropertyAction(RDFSNamedClass, String, String, CreatePropertyAction.CallBack) - Constructor for class edu.stanford.smi.protegex.owl.ui.clsproperties.CreatePropertyAction
CreatePropertyAction.CallBack - Interface in edu.stanford.smi.protegex.owl.ui.clsproperties
createPropertyFillersQuery(Document, String, RDFIndividual, OWLProperty) - Method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DefaultDIGTranslator
createPropertyFillersQuery(Document, String, RDFIndividual, OWLProperty) - Method in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGTranslator
  Creates a query that asks for the fillers for a qiven individual/property pair.
CreatePropertyForTypeAction - Class in edu.stanford.smi.protegex.owl.ui.resourcedisplay
  An Action to add a new slot to the direct type of a given Instance.
CreatePropertyForTypeAction(RDFResource) - Constructor for class edu.stanford.smi.protegex.owl.ui.resourcedisplay.CreatePropertyForTypeAction
createPropertyValue(Date) - Method in class edu.stanford.smi.protegex.owl.ui.widget.OWLDateTimeWidget
createPropertyValue(Date) - Method in class edu.stanford.smi.protegex.owl.ui.widget.OWLDateWidget
createProtegeReasoner(OWLModel) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.ReasonerManager
createProtegeReasoner(OWLModel, Class) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.ReasonerManager
createPurchase(String) - Method in class edu.stanford.smi.protegex.owlx.examples.javaDemo.model.MyFactory
createQuery(Document) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.AbstractSingleConceptWithConceptCollectionResultTask
  This method must be implemented by concrete subclasses.
createQuery(Document) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.GetAncestorConceptsTask
createQuery(Document) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.GetDescendantConceptsTask
createQuery(Document) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.GetEquivalentConceptsTask
createQuery(Document) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.GetSubConceptsTask
createQuery(Document) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.GetSuperConceptsTask
createQueryElement(Document, String, String) - Method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DefaultDIGTranslator
createRDFExternalResource(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
  Deprecated.
createRDFExternalResource(String) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Deprecated. use createRDFUntypedResource instead
createRDFIndividual(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFSNamedClass
createRDFIndividual(String) - Method in interface edu.stanford.smi.protegex.owl.model.RDFSNamedClass
  Creates a new individual of this (assuming this is not a metaclass).
createRDFList() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
createRDFList(Iterator) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
createRDFList() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Creates a new empty rdf:List
createRDFList(Iterator) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Creates a new rdf:List.
CreateRDFListResourceAction - Class in edu.stanford.smi.protegex.owl.ui.cls
CreateRDFListResourceAction() - Constructor for class edu.stanford.smi.protegex.owl.ui.cls.CreateRDFListResourceAction
createRDFProperty(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
createRDFProperty(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
createRDFProperty(String) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
CreateRDFProperty - Static variable in class edu.stanford.smi.protegex.owl.ui.profiles.OWLProfiles
CreateRDFSClass - Static variable in class edu.stanford.smi.protegex.owl.ui.profiles.OWLProfiles
createRDFSClassFromExpression(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
createRDFSClassFromExpression(String) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets or creates an RDFSClass based on a parsable expression.
createRDFSDatatype(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
createRDFSDatatype(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
createRDFSDatatype(String) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
createRDFSLiteral(Object) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
createRDFSLiteral(String, RDFSDatatype) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
createRDFSLiteral(String, String) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
createRDFSLiteral(Object) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Creates a new RDFSLiteral with a default datatype derived from the value.
createRDFSLiteral(String, RDFSDatatype) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Creates a new RDFSLiteral with a given datatype.
createRDFSLiteral(String, String) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Creates a new string-typed literal with a given language.
createRDFSLiteral(OWLModel, String, RDFSDatatype) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
createRDFSLiteralOrString(String, String) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
createRDFSLiteralOrString(String, String) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Creates a new string-typed literal with a given language.
createRDFSNamedClass(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
createRDFSNamedClass(String, boolean) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
createRDFSNamedClass(String, Collection, RDFSClass) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
createRDFSNamedClass(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
createRDFSNamedClass(String) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
createRDFSNamedClass(String, boolean) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
createRDFSNamedClass(String, Collection, RDFSClass) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Creates an RDFSNamedClass (or perhaps an OWLNamedClass) with given name, superclasses and rdf:type.
createRDFSNamedClass(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
createRDFSNamedClassUsingLabelAnnotation(OWLModel, String, boolean) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
createRDFSNamedSubclass(String, RDFSNamedClass) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
createRDFSNamedSubclass(String, RDFSNamedClass) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Creates a new named OWL class which has exactly a given superclass.
createRDFUntypedResource(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
createRDFUntypedResource(String) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Creates an untyped rdf:Resource for a given URI.
createReasoner(OWLModel) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.ReasonerManager
  Deprecated. Use `createProtegeReasoner(owlModel, DefaultProtegeOWLReasoner.class)`
createReasonerExceptionLogRecord(ProtegeReasonerException, ReasonerLogRecord) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.log.ReasonerLogRecordFactory
createReferencersAction() - Method in class edu.stanford.smi.protegex.owl.ui.individuals.AssertedInstancesListPanel
createRelatedIndividualsQuery(Document, String, OWLProperty) - Method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DefaultDIGTranslator
createRelatedIndividualsQuery(Document, String, OWLProperty) - Method in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGTranslator
  Creates a query that asks for the individuals that are related to each other via a given property.
createRenderer() - Method in class edu.stanford.smi.protegex.owl.ui.components.multiresource.MultiResourceList
createRepository(OWLModel, String) - Method in interface edu.stanford.smi.protegex.owl.repository.factory.RepositoryFactoryPlugin
  Creates a repository from the specified repository descriptor.
createRepository(OWLModel, String) - Method in class edu.stanford.smi.protegex.owl.repository.impl.DatabaseRepositoryFactoryPlugin
createRepository(OWLModel, String) - Method in class edu.stanford.smi.protegex.owl.repository.impl.DublinCoreDLVersionRedirectRepositoryFactoryPlugin
createRepository(OWLModel, String) - Method in class edu.stanford.smi.protegex.owl.repository.impl.FTPRepositoryFactoryPlugin
createRepository(OWLModel, String) - Method in class edu.stanford.smi.protegex.owl.repository.impl.HTTPRepositoryFactoryPlugin
createRepository(OWLModel, String) - Method in class edu.stanford.smi.protegex.owl.repository.impl.LocalFileRepositoryFactoryPlugin
createRepository(OWLModel, String) - Method in class edu.stanford.smi.protegex.owl.repository.impl.LocalFolderRepositoryFactoryPlugin
createRepository(OWLModel, String) - Method in class edu.stanford.smi.protegex.owl.repository.impl.RelativeFileRepositoryFactoryPlugin
createRepository(OWLModel, String) - Method in class edu.stanford.smi.protegex.owl.repository.impl.RelativeFolderRepositoryFactoryPlugin
createRepository() - Method in class edu.stanford.smi.protegex.owl.ui.repository.wizard.impl.DatabaseWizardPanel
createRepository(File, boolean, boolean) - Method in class edu.stanford.smi.protegex.owl.ui.repository.wizard.impl.FileSelectionWizardPanel
createRepository() - Method in class edu.stanford.smi.protegex.owl.ui.repository.wizard.impl.FileSelectionWizardPanel
createRepository() - Method in class edu.stanford.smi.protegex.owl.ui.repository.wizard.impl.HTTPRepositoryCreatorWizardPanel
createRepository() - Method in class edu.stanford.smi.protegex.owl.ui.repository.wizard.impl.RelativeFileURLSpecificationWizardPanel
createRepository() - Method in class edu.stanford.smi.protegex.owl.ui.repository.wizard.impl.RelativeURLSpecificationWizardPanel
createRepository() - Method in class edu.stanford.smi.protegex.owl.ui.repository.wizard.RepositoryCreatorWizardPanel
createRepositoryCreatorWizardPanel(WizardPage, OWLModel) - Method in class edu.stanford.smi.protegex.owl.ui.repository.wizard.impl.DatabaseRepositoryCreatorWizardPlugin
createRepositoryCreatorWizardPanel(WizardPage, OWLModel) - Method in class edu.stanford.smi.protegex.owl.ui.repository.wizard.impl.HTTPRepositoryCreatorWizardPlugin
createRepositoryCreatorWizardPanel(WizardPage, OWLModel) - Method in class edu.stanford.smi.protegex.owl.ui.repository.wizard.impl.LocalFileRepositoryCreatorWizardPlugin
createRepositoryCreatorWizardPanel(WizardPage, OWLModel) - Method in class edu.stanford.smi.protegex.owl.ui.repository.wizard.impl.LocalFolderRepositoryCreatorWizardPlugin
createRepositoryCreatorWizardPanel(WizardPage, OWLModel) - Method in class edu.stanford.smi.protegex.owl.ui.repository.wizard.impl.RelativeFileRepositoryCreatorWizardPlugin
createRepositoryCreatorWizardPanel(WizardPage, OWLModel) - Method in class edu.stanford.smi.protegex.owl.ui.repository.wizard.impl.RelativeFolderRepositoryCreatorWizardPlugin
createRepositoryCreatorWizardPanel(WizardPage, OWLModel) - Method in interface edu.stanford.smi.protegex.owl.ui.repository.wizard.RepositoryCreatorWizardPlugin
createResourcePanel() - Method in class edu.stanford.smi.protegex.owl.ui.cls.OWLClassesTab
createResourcePanel() - Method in class edu.stanford.smi.protegex.owl.ui.properties.OWLPropertiesTab
createResourcePanel(OWLModel, int) - Method in class edu.stanford.smi.protegex.owl.ui.resourcedisplay.DefaultResourcePanelFactory
createResourcePanel(OWLModel, int) - Method in interface edu.stanford.smi.protegex.owl.ui.resourcedisplay.ResourcePanelFactory
  Creates a new ResourcePanel.
createRestriction(String, String, TripleStore) - Method in class edu.stanford.smi.protegex.owl.jena.parser.AbstractStatefulTripleProcessor
createRestriction(OWLModel, FrameID, String, TripleStore) - Static method in class edu.stanford.smi.protegex.owl.jena.parser.RestrictionCreatorUtility
CreateRestriction - Class in edu.stanford.smi.protegex.owlx.examples
  Creates a class Parent as a subclass of Person, where each Parent has the necessary condition that he or she has at least one child.
CreateRestriction() - Constructor for class edu.stanford.smi.protegex.owlx.examples.CreateRestriction
createRoot() - Method in class edu.stanford.smi.protegex.owl.ui.properties.OWLAnnotationPropertySubpropertyPane
createRoot() - Method in class edu.stanford.smi.protegex.owl.ui.properties.OWLDatatypePropertySubpropertyPane
createRoot() - Method in class edu.stanford.smi.protegex.owl.ui.properties.OWLObjectPropertySubpropertyPane
createRoot() - Method in class edu.stanford.smi.protegex.owl.ui.properties.OWLSubpropertyPane
CreateRuleAction - Class in edu.stanford.smi.protegex.owl.swrl.ui.table
CreateRuleAction(SWRLTable, OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.swrl.ui.table.CreateRuleAction
createSameAsWidget() - Method in class edu.stanford.smi.protegex.owl.ui.metadata.OWLMetadataWidget
  Deprecated.
createSameIndividualAtom(RDFResource, RDFResource) - Method in class edu.stanford.smi.protegex.owl.swrl.model.SWRLFactory
createSatisfiableQuery(Document, String, RDFSClass) - Method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DefaultDIGTranslator
createSatisfiableQuery(Document, String, RDFSClass[]) - Method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DefaultDIGTranslator
createSatisfiableQuery(Document, String, RDFSClass) - Method in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGTranslator
  Creates a query that asks if a given class is satisfiable.
createSatisfiableQuery(Document, String, RDFSClass[]) - Method in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGTranslator
  Creates a query that asks if the intersection of a list of classes is satisfiable/consistent.
createSelectableTree(Action, Cls) - Method in class edu.stanford.smi.protegex.owl.ui.cls.OWLSubclassPane
createSelectableTree(Action, LazyTreeRoot) - Method in class edu.stanford.smi.protegex.owl.ui.existential.ExistentialTreePanel
createSelectableTree(Action, LazyTreeRoot) - Method in class edu.stanford.smi.protegex.owl.ui.explorer.ExplorerTreePanel
createSelectableTree(Action, LazyTreeRoot) - Method in class edu.stanford.smi.protegex.owl.ui.subsumption.InferredSubsumptionTreePanel
createSelectableTree(Action, LazyTreeRoot) - Method in class edu.stanford.smi.protegex.owl.ui.subsumption.SubsumptionTreePanel
createSeparator(int) - Static method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTableItem
createSetDisplaySlotMenuItem() - Method in class edu.stanford.smi.protegex.owl.ui.individuals.AssertedInstancesListPanel
createSetDisplaySlotMultipleAction() - Method in class edu.stanford.smi.protegex.owl.ui.individuals.AssertedInstancesListPanel
createSetDisplaySlotsMenuItem() - Method in class edu.stanford.smi.protegex.owl.ui.individuals.AssertedInstancesListPanel
createShowAllInstancesAction() - Method in class edu.stanford.smi.protegex.owl.ui.individuals.AssertedInstancesListPanel
CreateSiblingClassAction - Class in edu.stanford.smi.protegex.owl.ui.cls
  A ResourceAction for named classes, to create a sibling of the currently selected class.
CreateSiblingClassAction() - Constructor for class edu.stanford.smi.protegex.owl.ui.cls.CreateSiblingClassAction
createSimpleInstance(FrameID, Collection) - Method in class edu.stanford.smi.protegex.owl.model.factory.OWLJavaFactory
createSimpleInstance(FrameID, Collection, boolean) - Method in class edu.stanford.smi.protegex.owl.model.framestore.TypeUpdateFrameStore
createSimpleInstance(FrameID, Collection, boolean) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
createSimpleInstance(FrameID, Collection) - Method in class edu.stanford.smi.protegex.owl.swrl.model.factory.SWRLJavaFactory
CreateSimpleOWLModel - Class in edu.stanford.smi.protegex.owlx.examples
  An example program that creates an empty OWLModel, fills it with some example classes, properties and individuals, and finally prints it in RDF syntax to the screen.
CreateSimpleOWLModel() - Constructor for class edu.stanford.smi.protegex.owlx.examples.CreateSimpleOWLModel
createSlot(FrameID, Collection) - Method in class edu.stanford.smi.protegex.owl.model.factory.OWLJavaFactory
createSlot(FrameID, Collection, Collection, boolean) - Method in class edu.stanford.smi.protegex.owl.model.framestore.DomainUpdateFrameStore
createSlot(FrameID, Collection, Collection, boolean) - Method in class edu.stanford.smi.protegex.owl.model.framestore.FacetUpdateFrameStore
createSlot(FrameID, Collection, Collection, boolean) - Method in class edu.stanford.smi.protegex.owl.model.framestore.RangeUpdateFrameStore
createSlot(FrameID, Collection, Collection, boolean) - Method in class edu.stanford.smi.protegex.owl.model.framestore.TypeUpdateFrameStore
createSlot(String) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
createSlot(String, Cls) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
createSlot(String, Cls, boolean) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not needed
createSlot(String, Cls, Collection, boolean) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
createSlot(String, ValueType) - Method in class edu.stanford.smi.protegex.owl.storage.KnowledgeBaseCopier
createSlot(String, ValueType) - Method in class edu.stanford.smi.protegex.owl.storage.ProtegeSaver
createSlotCode(PrintWriter, RDFSNamedClass, RDFProperty) - Method in class edu.stanford.smi.protegex.owl.emf.EMFGenerator
createSubclass(String, RDFSNamedClass) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
createSubclass(String, Collection) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
createSubclass(String, RDFSNamedClass) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Creates a subclass of a superclass.
createSubclass(String, Collection) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Creates a subclass of a number of superclasses.
CreateSubclassAction - Class in edu.stanford.smi.protegex.owl.ui.cls
  A ResourceAction for named classes, to create a subclass of the currently selected class.
CreateSubclassAction() - Constructor for class edu.stanford.smi.protegex.owl.ui.cls.CreateSubclassAction
createSubclassOf(Cls, Cls, TripleStore) - Static method in class edu.stanford.smi.protegex.owl.jena.parser.FrameCreatorUtility
createSubclassPane(Action, RDFSNamedClass, Action, Action) - Method in class edu.stanford.smi.protegex.owl.ui.cls.AssertedClassesPanel
  Deprecated.
createSubclassPane(Action, RDFSNamedClass, Action) - Method in class edu.stanford.smi.protegex.owl.ui.cls.AssertedClassesPanel
CreateSubClassSuggestion - Class in edu.stanford.smi.protegex.owl.ui.clsdesc.manchester
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Sep 7, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
CreateSubClassSuggestion(OWLModel, String) - Constructor for class edu.stanford.smi.protegex.owl.ui.clsdesc.manchester.CreateSubClassSuggestion
createSubproperty(String, RDFProperty) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
createSubproperty(String, RDFProperty) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Creates a new property as a subproperty of an existing property.
CreateSubpropertyAction - Class in edu.stanford.smi.protegex.owl.ui.properties.actions
CreateSubpropertyAction() - Constructor for class edu.stanford.smi.protegex.owl.ui.properties.actions.CreateSubpropertyAction
createSubpropertyOf(Slot, Slot, TripleStore) - Static method in class edu.stanford.smi.protegex.owl.jena.parser.FrameCreatorUtility
createSubsumesQuery(Document, String, RDFSClass, RDFSClass) - Method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DefaultDIGTranslator
createSubsumesQuery(Document, String, RDFSClass, RDFSClass) - Method in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGTranslator
  Creates a query that asks if one concept subsumes another concept.
createSufficient(RDFSClass, int, OWLIntersectionClass) - Static method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTableItem
createSWRLPluginGUI(OWLModel, String, String, Icon, Icon) - Method in interface edu.stanford.smi.protegex.owl.swrl.ui.P3SWRLTabPluginCreator
createSymbolEditorComponent(OWLModel, SymbolErrorDisplay) - Method in class edu.stanford.smi.protegex.owl.swrl.ui.table.SWRLTable
createSymbolEditorComponent(OWLModel, SymbolErrorDisplay) - Method in class edu.stanford.smi.protegex.owl.ui.classform.component.property.PropertyFormTable
createSymbolEditorComponent(OWLModel, SymbolErrorDisplay) - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.ClassDescriptionTable
createSymbolEditorComponent(OWLModel, SymbolErrorDisplay) - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTable
createSymbolEditorComponent(OWLModel, SymbolErrorDisplay) - Method in class edu.stanford.smi.protegex.owl.ui.owltable.SymbolTable
createSymbolTextField(OWLModel, SymbolErrorDisplay) - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTable
createSystemFrames() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
createTable(Project) - Method in class edu.stanford.smi.protegex.owl.ui.components.annotations.AnnotationsComponent
createTable(Project) - Method in class edu.stanford.smi.protegex.owl.ui.components.triples.AbstractTriplesComponent
createTableModel() - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.ClassDescriptionWidget
createTableModel() - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.DisjointClassesWidget
createTableModel() - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.PropertiesSuperclassesWidget
createTableModel() - Method in class edu.stanford.smi.protegex.owl.ui.components.annotations.AnnotationsComponent
createTableModel() - Method in class edu.stanford.smi.protegex.owl.ui.components.triples.AbstractTriplesComponent
createTellsDocument(String) - Method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DefaultDIGTranslator
createTellsDocument(String) - Method in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGTranslator
  A convenience method that creates an XML DIG Tells document.
createTextComponent() - Method in class edu.stanford.smi.protegex.owl.ui.components.singleliteral.AbstractSingleLiteralComponent
createTextComponent() - Method in class edu.stanford.smi.protegex.owl.ui.components.singleliteral.SingleLiteralAreaComponent
createTextComponent() - Method in class edu.stanford.smi.protegex.owl.ui.components.singleliteral.SingleLiteralComponent
createTextComponentHolder(JTextComponent) - Method in class edu.stanford.smi.protegex.owl.ui.components.singleliteral.AbstractSingleLiteralComponent
createTextComponentHolder(JTextComponent) - Method in class edu.stanford.smi.protegex.owl.ui.components.singleliteral.SingleLiteralAreaComponent
createTextComponentHolder(JTextComponent) - Method in class edu.stanford.smi.protegex.owl.ui.components.singleliteral.SingleLiteralComponent
createToolBar() - Static method in class edu.stanford.smi.protegex.owl.ui.widget.OWLUI
createTransferable(JComponent) - Method in class edu.stanford.smi.protegex.owl.ui.owltable.OWLTableTransferHandler
createTranslator() - Method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DIGTranslatorFactory
  Creates an instance of an implementation of DIGTranslator
createTriple(RDFResource, RDFProperty, Object) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
createTriple(RDFResource, RDFProperty, Object) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Creates a new Triple.
CreateTripleStorePanel - Class in edu.stanford.smi.protegex.owl.ui.triplestore
CreateTripleStorePanel(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.ui.triplestore.CreateTripleStorePanel
createUniqueNewFrameName(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
createUntypedResources() - Method in class edu.stanford.smi.protegex.owl.jena.parser.TripleProcessor
createUserImplementation(RDFSNamedClass) - Method in class edu.stanford.smi.protegex.owl.javacode.JavaCodeGenerator
CreateValueAction - Class in edu.stanford.smi.protegex.owl.ui.components.triples
CreateValueAction(TriplesTable) - Constructor for class edu.stanford.smi.protegex.owl.ui.components.triples.CreateValueAction
CreateValueAction(TriplesTable, String, Icon) - Constructor for class edu.stanford.smi.protegex.owl.ui.components.triples.CreateValueAction
createVariable(String) - Method in class edu.stanford.smi.protegex.owl.swrl.model.SWRLFactory
createVeryGoodCustomer(String) - Method in class edu.stanford.smi.protegex.owlx.examples.javaDemo.model.MyFactory
createViewAction() - Method in class edu.stanford.smi.protegex.owl.ui.individuals.AssertedInstancesListPanel
createViewClassAction() - Method in class edu.stanford.smi.protegex.owl.ui.explorer.ExplorerTreePanel
createViewClsAction() - Method in class edu.stanford.smi.protegex.owl.ui.existential.ExistentialTreePanel
createViewClsAction() - Method in class edu.stanford.smi.protegex.owl.ui.subsumption.InferredSubsumptionTreePanel
createViewClsAction() - Method in class edu.stanford.smi.protegex.owl.ui.subsumption.SubsumptionTreePanel
createWarningMessageLogRecord(RDFResource, String, ReasonerLogRecord) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.log.ReasonerLogRecordFactory
createWidgetConfigurationPanel() - Method in class edu.stanford.smi.protegex.owl.ui.clsproperties.PropertyRestrictionsTreeWidget
createWidgetConfigurationPanel() - Method in class edu.stanford.smi.protegex.owl.ui.widget.AbstractPropertyValuesWidget
createWidgetConfigurationPanel() - Method in class edu.stanford.smi.protegex.owl.ui.widget.MultiWidgetPropertyWidget
createWidgetConfigurationPanel() - Method in class edu.stanford.smi.protegex.owl.ui.widget.OWLDateWidget
createWidgetDescriptor(SlotWidget, Cls, Slot) - Method in class edu.stanford.smi.protegex.owl.ui.widget.MultiWidgetPropertyWidget
createXMLWriter(Writer, XMLWriterNamespaceManager, String) - Method in class edu.stanford.smi.protegex.owl.writer.xml.XMLWriterFactory
  Creates an XMLWriter.
curChar - Variable in class edu.stanford.smi.protegex.owl.model.classparser.compact.CompactParserTokenManager
curChar - Variable in class edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxParserTokenManager
curChar - Variable in class edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParserTokenManager
CURRENT_REASONER_PROPERTY - Static variable in class edu.stanford.smi.protegex.owl.inference.protegeowl.ReasonerManager
currentToken - Variable in exception edu.stanford.smi.protegex.owl.model.classparser.compact.ParseException
  This is the last token that has been consumed successfully.
currentToken - Variable in exception edu.stanford.smi.protegex.owl.model.classparser.dl.ParseException
  This is the last token that has been consumed successfully.
currentToken - Variable in exception edu.stanford.smi.protegex.owl.model.classparser.manchester.ParseException
  This is the last token that has been consumed successfully.
currentToken - Variable in exception edu.stanford.smi.protegex.owl.model.classparser.OWLClassParseException
CUSTOM_PROFILE_KEY - Static variable in class edu.stanford.smi.protegex.owl.ui.profiles.ProfilesManager
Customer - Interface in edu.stanford.smi.protegex.owlx.examples.javaDemo.model
  An extension of Customer_ with extra methods.
Customer_ - Interface in edu.stanford.smi.protegex.owlx.examples.javaDemo.model
  Generated by Protege-OWL (http://protege.stanford.edu/plugins/owl).

## D

DATA_RANGE - Static variable in interface edu.stanford.smi.protegex.owl.model.OWLNames.Cls
DATA_RANGE - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.Slot
DATA_RANGE_ATOM - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.Cls
DATABASE_FIELDS - Static variable in class edu.stanford.smi.protegex.owl.repository.impl.DatabaseRepository
databaseExists(Connection) - Method in class edu.stanford.smi.protegex.owl.database.OWLDatabaseWizardPage
DatabaseFactoryUtils - Class in edu.stanford.smi.protegex.owl.database
  This class is for internal use only.
DatabaseFactoryUtils() - Constructor for class edu.stanford.smi.protegex.owl.database.DatabaseFactoryUtils
DatabaseRepository - Class in edu.stanford.smi.protegex.owl.repository.impl
DatabaseRepository(String, String, String, String) - Constructor for class edu.stanford.smi.protegex.owl.repository.impl.DatabaseRepository
DatabaseRepository(String, String, String, String, String) - Constructor for class edu.stanford.smi.protegex.owl.repository.impl.DatabaseRepository
DatabaseRepository(String) - Constructor for class edu.stanford.smi.protegex.owl.repository.impl.DatabaseRepository
DatabaseRepositoryCreatorWizardPlugin - Class in edu.stanford.smi.protegex.owl.ui.repository.wizard.impl
DatabaseRepositoryCreatorWizardPlugin() - Constructor for class edu.stanford.smi.protegex.owl.ui.repository.wizard.impl.DatabaseRepositoryCreatorWizardPlugin
DatabaseRepositoryFactoryPlugin - Class in edu.stanford.smi.protegex.owl.repository.impl
DatabaseRepositoryFactoryPlugin() - Constructor for class edu.stanford.smi.protegex.owl.repository.impl.DatabaseRepositoryFactoryPlugin
DatabaseWizardPanel - Class in edu.stanford.smi.protegex.owl.ui.repository.wizard.impl
DatabaseWizardPanel(WizardPage, OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.ui.repository.wizard.impl.DatabaseWizardPanel
dataIcon - Static variable in class edu.stanford.smi.protegex.owl.ui.metrics.MetricsPanel
DataRangeFieldComponent - Class in edu.stanford.smi.protegex.owl.ui.components.datarangefield
DataRangeFieldComponent(RDFProperty) - Constructor for class edu.stanford.smi.protegex.owl.ui.components.datarangefield.DataRangeFieldComponent
DataRangeFieldComponent(RDFProperty, String) - Constructor for class edu.stanford.smi.protegex.owl.ui.components.datarangefield.DataRangeFieldComponent
DataRangeFieldComponent(RDFProperty, String, boolean) - Constructor for class edu.stanford.smi.protegex.owl.ui.components.datarangefield.DataRangeFieldComponent
DataRangeFieldWidget - Class in edu.stanford.smi.protegex.owl.ui.widget
DataRangeFieldWidget() - Constructor for class edu.stanford.smi.protegex.owl.ui.widget.DataRangeFieldWidget
DataRangeFieldWidgetMetadata - Class in edu.stanford.smi.protegex.owl.ui.widget
DataRangeFieldWidgetMetadata() - Constructor for class edu.stanford.smi.protegex.owl.ui.widget.DataRangeFieldWidgetMetadata
DataRanges - Static variable in class edu.stanford.smi.protegex.owl.ui.profiles.OWLProfiles
Datatype() - Method in class edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxParser
DataType() - Method in class edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParser
DATATYPE - Static variable in interface edu.stanford.smi.protegex.owl.model.RDFNames.Slot
DATATYPE - Static variable in interface edu.stanford.smi.protegex.owl.model.RDFSNames.Cls
DATATYPE - Static variable in class edu.stanford.smi.protegex.owl.model.util.DLExpressivityChecker
DATATYPE_ID - Static variable in interface edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxParserConstants
DATATYPE_PREFIX - Static variable in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFSLiteral
DATATYPE_PROPERTY - Static variable in interface edu.stanford.smi.protegex.owl.model.OWLNames.Cls
DATATYPE_PROPERTY_ID - Static variable in interface edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxParserConstants
DATATYPE_TRIPLE - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
datatypeComboListener - Variable in class edu.stanford.smi.protegex.owl.ui.components.singleliteral.AbstractSingleLiteralComponent
DATATYPEID - Static variable in interface edu.stanford.smi.protegex.owl.model.classparser.compact.CompactParserConstants
DATATYPEID - Static variable in interface edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParserConstants
DatatypeNameChecker - Class in edu.stanford.smi.protegex.owl.model.classparser
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Jan 16, 2006

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
DatatypeNameChecker(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.model.classparser.DatatypeNameChecker
DatatypeProperty() - Method in class edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxParser
DatatypeProperty_Type - Static variable in class edu.stanford.smi.protegex.owl.ui.profiles.OWLProfiles
DatatypeSettingsPanel - Class in edu.stanford.smi.protegex.owl.ui.menu.preferences
DatatypeSettingsPanel(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.ui.menu.preferences.DatatypeSettingsPanel
DATAVALUED_PROPERTY_ATOM - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.Cls
DATE - Static variable in interface edu.stanford.smi.protegex.owl.model.XSDNames
DATE - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.CoreBuiltIns
DATE_TIME - Static variable in interface edu.stanford.smi.protegex.owl.model.XSDNames
DATE_TIME - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLConstants.BuiltIns
  Deprecated.
DateAnnotationsWidgetPlugin - Class in edu.stanford.smi.protegex.owl.ui.metadata
DateAnnotationsWidgetPlugin() - Constructor for class edu.stanford.smi.protegex.owl.ui.metadata.DateAnnotationsWidgetPlugin
DATETIME - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.CoreBuiltIns
DateTimeAnnotationsWidgetPlugin - Class in edu.stanford.smi.protegex.owl.ui.metadata
DateTimeAnnotationsWidgetPlugin() - Constructor for class edu.stanford.smi.protegex.owl.ui.metadata.DateTimeAnnotationsWidgetPlugin
DateTimeValueEditor - Class in edu.stanford.smi.protegex.owl.ui.editors
DateTimeValueEditor() - Constructor for class edu.stanford.smi.protegex.owl.ui.editors.DateTimeValueEditor
DateValueEditor - Class in edu.stanford.smi.protegex.owl.ui.editors
DateValueEditor() - Constructor for class edu.stanford.smi.protegex.owl.ui.editors.DateValueEditor
DAY_TIME_DURATION - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLConstants.BuiltIns
  Deprecated.
DAY_TIME_DURATION - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.CoreBuiltIns
DC - Static variable in class edu.stanford.smi.protegex.owl.repository.impl.DublinCoreDLVersionRedirectRepository
DC_ALT - Static variable in class edu.stanford.smi.protegex.owl.repository.impl.DublinCoreDLVersionRedirectRepository
debugStream - Variable in class edu.stanford.smi.protegex.owl.model.classparser.compact.CompactParserTokenManager
debugStream - Variable in class edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxParserTokenManager
debugStream - Variable in class edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParserTokenManager
DECIMAL - Static variable in interface edu.stanford.smi.protegex.owl.model.XSDNames
deepCopy(KnowledgeBase, Map) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeInstance
  Deprecated. not needed
DEF_ATTRIBUTE - Static variable in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGVocabulary.Tell
DEF_CONCEPT - Static variable in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGVocabulary.Tell
DEF_FEATURE - Static variable in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGVocabulary.Tell
DEF_INDIVIDUAL - Static variable in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGVocabulary.Tell
DEF_ROLE - Static variable in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGVocabulary.Tell
DEFAULT - Static variable in interface edu.stanford.smi.protegex.owl.model.classparser.compact.CompactParserConstants
DEFAULT - Static variable in interface edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxParserConstants
DEFAULT - Static variable in interface edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParserConstants
DEFAULT - Static variable in interface edu.stanford.smi.protegex.owl.ui.widget.OWLWidgetMetadata
  Indicates that this widget is the default widget unless some other plugin declares a widget with higher suitability
DEFAULT_ANNOTATION_PROPERTY_NAME - Static variable in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
DEFAULT_BASE - Static variable in class edu.stanford.smi.protegex.owl.ui.metadatatab.OntologyURIPanel
DEFAULT_BROWSER_SLOT_PROP - Static variable in class edu.stanford.smi.protegex.owl.ui.menu.preferences.RenderingPanel
DEFAULT_CLASS_NAME - Static variable in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
DEFAULT_DATATYPE_PROPERTY_NAME - Static variable in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
DEFAULT_DEFAULT_BASE - Static variable in class edu.stanford.smi.protegex.owl.model.ProtegeNames
DEFAULT_DEFAULT_NAMESPACE - Static variable in class edu.stanford.smi.protegex.owl.model.ProtegeNames
DEFAULT_HEIGHT - Static variable in class edu.stanford.smi.protegex.owl.ui.wizard.OWLWizard
DEFAULT_INDIVIDUAL_NAME - Static variable in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
DEFAULT_LANGUAGE - Static variable in class edu.stanford.smi.protegex.owl.model.ProtegeNames
DEFAULT_LANGUATE_PROPERTY - Static variable in class edu.stanford.smi.protegex.owl.ui.menu.preferences.RenderingPanel
DEFAULT_NAMESPACE_PREFIX - Static variable in class edu.stanford.smi.protegex.owl.model.impl.AbstractNamespaceManager
DEFAULT_NAMESPACE_SEPARATOR - Static variable in class edu.stanford.smi.protegex.owl.jena.Jena
DEFAULT_OBJECT_PROPERTY_NAME - Static variable in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
DEFAULT_ONT_POLICY_FILE_PATH - Static variable in class edu.stanford.smi.protegex.owl.jena.Jena
DEFAULT_ONTOLOGY - Static variable in class edu.stanford.smi.protegex.owl.model.ProtegeNames
DEFAULT_PREFIX - Static variable in class edu.stanford.smi.protegex.owl.jena.JenaOWLModel
DEFAULT_PREFIX - Static variable in class edu.stanford.smi.protegex.owl.model.XSPNames
DEFAULT_PREFIX_START - Static variable in class edu.stanford.smi.protegex.owl.model.impl.AbstractNamespaceManager
DEFAULT_PROFILE_KEY - Static variable in class edu.stanford.smi.protegex.owl.ui.profiles.ProfileSelectionWizardPage
DEFAULT_PROFILES - Static variable in class edu.stanford.smi.protegex.owl.ui.profiles.ProfileSelectionPanel
DEFAULT_PROPERTY_NAME - Static variable in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
DEFAULT_REASONER_URL - Static variable in class edu.stanford.smi.protegex.owl.inference.util.ReasonerPreferences
DEFAULT_RULE_ENGINE - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames
DEFAULT_TODO_PREFIX - Static variable in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
DEFAULT_TYPE_CLASS - Static variable in interface edu.stanford.smi.protegex.owl.ui.resourcedisplay.ResourcePanel
DEFAULT_TYPE_CLS - Static variable in class edu.stanford.smi.protegex.owl.ui.resourcedisplay.ResourceDisplay
  Deprecated.
DEFAULT_TYPE_INDIVIDUAL - Static variable in interface edu.stanford.smi.protegex.owl.ui.resourcedisplay.ResourcePanel
DEFAULT_TYPE_INSTANCE - Static variable in class edu.stanford.smi.protegex.owl.ui.resourcedisplay.ResourceDisplay
  Deprecated.
DEFAULT_TYPE_ONTOLOGY - Static variable in interface edu.stanford.smi.protegex.owl.ui.resourcedisplay.ResourcePanel
DEFAULT_TYPE_PROPERTY - Static variable in interface edu.stanford.smi.protegex.owl.ui.resourcedisplay.ResourcePanel
DEFAULT_TYPE_SLOT - Static variable in class edu.stanford.smi.protegex.owl.ui.resourcedisplay.ResourceDisplay
  Deprecated.
DEFAULT_URL_PROPERTY - Static variable in class edu.stanford.smi.protegex.owl.inference.dig.reasoner.DefaultDIGReasoner
DEFAULT_USED_LANGUAGES - Static variable in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
DEFAULT_WIDTH - Static variable in class edu.stanford.smi.protegex.owl.ui.wizard.OWLWizard
DefaultAnnotations - Class in edu.stanford.smi.protegex.owl.ui.components.annotations
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Oct 20, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
DefaultAnnotations(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.ui.components.annotations.DefaultAnnotations
DefaultClassFind - Class in edu.stanford.smi.protegex.owl.ui.search.finder
DefaultClassFind(OWLModel, int) - Constructor for class edu.stanford.smi.protegex.owl.ui.search.finder.DefaultClassFind
defaultClsMetaClsChanged(KnowledgeBaseEvent) - Method in class edu.stanford.smi.protegex.owl.model.event.ModelAdapter
  Deprecated.
defaultClsMetaClsChanged(KnowledgeBaseEvent) - Method in interface edu.stanford.smi.protegex.owl.model.event.ProtegeKnowledgeBaseListener
  Deprecated. not needed
DefaultConceptConsistencyLogRecord - Class in edu.stanford.smi.protegex.owl.inference.protegeowl.log
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Aug 23, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
DefaultConceptConsistencyLogRecord(RDFSClass, boolean, ReasonerLogRecord) - Constructor for class edu.stanford.smi.protegex.owl.inference.protegeowl.log.DefaultConceptConsistencyLogRecord
DefaultCustomer - Class in edu.stanford.smi.protegex.owlx.examples.javaDemo.model.impl
DefaultCustomer(OWLModel, FrameID) - Constructor for class edu.stanford.smi.protegex.owlx.examples.javaDemo.model.impl.DefaultCustomer
DefaultCustomer() - Constructor for class edu.stanford.smi.protegex.owlx.examples.javaDemo.model.impl.DefaultCustomer
DefaultCustomer_ - Class in edu.stanford.smi.protegex.owlx.examples.javaDemo.model.impl
  Generated by Protege-OWL (http://protege.stanford.edu/plugins/owl).
DefaultCustomer_(OWLModel, FrameID) - Constructor for class edu.stanford.smi.protegex.owlx.examples.javaDemo.model.impl.DefaultCustomer_
DefaultCustomer_() - Constructor for class edu.stanford.smi.protegex.owlx.examples.javaDemo.model.impl.DefaultCustomer_
DefaultDIGQueryResponse - Class in edu.stanford.smi.protegex.owl.inference.dig.translator
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Jul 20, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
DefaultDIGQueryResponse(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.inference.dig.translator.DefaultDIGQueryResponse
DefaultDIGQueryResponseIterator - Class in edu.stanford.smi.protegex.owl.inference.dig.translator
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Jun 29, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
DefaultDIGQueryResponseIterator(Document, OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.inference.dig.translator.DefaultDIGQueryResponseIterator
DefaultDIGReasoner - Class in edu.stanford.smi.protegex.owl.inference.dig.reasoner
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Jun 4, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
DefaultDIGReasoner() - Constructor for class edu.stanford.smi.protegex.owl.inference.dig.reasoner.DefaultDIGReasoner
DefaultDIGRenderer - Class in edu.stanford.smi.protegex.owl.inference.dig.translator
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Sep 4, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
DefaultDIGRenderer() - Constructor for class edu.stanford.smi.protegex.owl.inference.dig.translator.DefaultDIGRenderer
DefaultDIGTranslator - Class in edu.stanford.smi.protegex.owl.inference.dig.translator
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Jun 28, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
DefaultDIGTranslator() - Constructor for class edu.stanford.smi.protegex.owl.inference.dig.translator.DefaultDIGTranslator
DefaultExplorerFilter - Class in edu.stanford.smi.protegex.owl.ui.explorer.filter
DefaultExplorerFilter() - Constructor for class edu.stanford.smi.protegex.owl.ui.explorer.filter.DefaultExplorerFilter
defaultFacetMetaClsChanged(KnowledgeBaseEvent) - Method in class edu.stanford.smi.protegex.owl.model.event.ModelAdapter
  Deprecated.
defaultFacetMetaClsChanged(KnowledgeBaseEvent) - Method in interface edu.stanford.smi.protegex.owl.model.event.ProtegeKnowledgeBaseListener
  Deprecated. not needed
DefaultGoodCustomer - Class in edu.stanford.smi.protegex.owlx.examples.javaDemo.model.impl
  Generated by Protege-OWL (http://protege.stanford.edu/plugins/owl).
DefaultGoodCustomer(OWLModel, FrameID) - Constructor for class edu.stanford.smi.protegex.owlx.examples.javaDemo.model.impl.DefaultGoodCustomer
DefaultGoodCustomer() - Constructor for class edu.stanford.smi.protegex.owlx.examples.javaDemo.model.impl.DefaultGoodCustomer
DefaultIconFactory - Class in edu.stanford.smi.protegex.owl.ui.icons
  The default implementation of IconFactory.
DefaultIconFactory() - Constructor for class edu.stanford.smi.protegex.owl.ui.icons.DefaultIconFactory
DefaultIndividualFind - Class in edu.stanford.smi.protegex.owl.ui.search.finder
DefaultIndividualFind(OWLModel, int) - Constructor for class edu.stanford.smi.protegex.owl.ui.search.finder.DefaultIndividualFind
DefaultModalDialogFactory - Class in edu.stanford.smi.protegex.owl.ui.dialogs
DefaultModalDialogFactory() - Constructor for class edu.stanford.smi.protegex.owl.ui.dialogs.DefaultModalDialogFactory
defaultNamespaceChanged(String, String) - Method in class edu.stanford.smi.protegex.owl.model.NamespaceManagerAdapter
defaultNamespaceChanged(String, String) - Method in interface edu.stanford.smi.protegex.owl.model.NamespaceManagerListener
DefaultOWLAllDifferent - Class in edu.stanford.smi.protegex.owl.model.impl
DefaultOWLAllDifferent(KnowledgeBase, FrameID) - Constructor for class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLAllDifferent
DefaultOWLAllDifferent() - Constructor for class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLAllDifferent
DefaultOWLAllValuesFrom - Class in edu.stanford.smi.protegex.owl.model.impl
  The default implementation of OWLAllValuesFrom.
DefaultOWLAllValuesFrom(KnowledgeBase, FrameID) - Constructor for class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLAllValuesFrom
DefaultOWLAllValuesFrom() - Constructor for class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLAllValuesFrom
DefaultOWLCardinality - Class in edu.stanford.smi.protegex.owl.model.impl
  A class representing a cardinality restriction.
DefaultOWLCardinality(KnowledgeBase, FrameID) - Constructor for class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLCardinality
DefaultOWLCardinality() - Constructor for class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLCardinality
DefaultOWLComplementClass - Class in edu.stanford.smi.protegex.owl.model.impl
DefaultOWLComplementClass(KnowledgeBase, FrameID) - Constructor for class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLComplementClass
DefaultOWLComplementClass() - Constructor for class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLComplementClass
DefaultOWLDataRange - Class in edu.stanford.smi.protegex.owl.model.impl
DefaultOWLDataRange(KnowledgeBase, FrameID) - Constructor for class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLDataRange
DefaultOWLDataRange() - Constructor for class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLDataRange
DefaultOWLDatatypeProperty - Class in edu.stanford.smi.protegex.owl.model.impl
  The default implementation of the OWLDatatypeProperty interface.
DefaultOWLDatatypeProperty(KnowledgeBase, FrameID) - Constructor for class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLDatatypeProperty
DefaultOWLDatatypeProperty() - Constructor for class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLDatatypeProperty
DefaultOWLEnumeratedClass - Class in edu.stanford.smi.protegex.owl.model.impl
  The default implementation of OWLEnumeratedClass.
DefaultOWLEnumeratedClass(KnowledgeBase, FrameID) - Constructor for class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLEnumeratedClass
DefaultOWLEnumeratedClass() - Constructor for class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLEnumeratedClass
DefaultOWLHasValue - Class in edu.stanford.smi.protegex.owl.model.impl
  A Cls representing a hasValue restriction.
DefaultOWLHasValue(KnowledgeBase, FrameID) - Constructor for class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLHasValue
DefaultOWLHasValue() - Constructor for class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLHasValue
DefaultOWLIndividual - Class in edu.stanford.smi.protegex.owl.model.impl
DefaultOWLIndividual(KnowledgeBase, FrameID) - Constructor for class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLIndividual
DefaultOWLIndividual() - Constructor for class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLIndividual
DefaultOWLIntersectionClass - Class in edu.stanford.smi.protegex.owl.model.impl
  The default implementation of the OWLIntersectionClass interface.
DefaultOWLIntersectionClass(KnowledgeBase, FrameID) - Constructor for class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLIntersectionClass
DefaultOWLIntersectionClass() - Constructor for class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLIntersectionClass
DefaultOWLMaxCardinality - Class in edu.stanford.smi.protegex.owl.model.impl
  A Cls representing a maximumCardinality restriction.
DefaultOWLMaxCardinality(KnowledgeBase, FrameID) - Constructor for class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLMaxCardinality
DefaultOWLMaxCardinality() - Constructor for class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLMaxCardinality
DefaultOWLMinCardinality - Class in edu.stanford.smi.protegex.owl.model.impl
  A Cls representing a minimumCardinality restriction.
DefaultOWLMinCardinality(KnowledgeBase, FrameID) - Constructor for class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLMinCardinality
DefaultOWLMinCardinality() - Constructor for class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLMinCardinality
DefaultOWLNamedClass - Class in edu.stanford.smi.protegex.owl.model.impl
  The default implementation of the OWLNamedClass interface.
DefaultOWLNamedClass(KnowledgeBase, FrameID) - Constructor for class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLNamedClass
DefaultOWLNamedClass() - Constructor for class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLNamedClass
DefaultOWLObjectProperty - Class in edu.stanford.smi.protegex.owl.model.impl
  The default implementation of the OWLObjectProperty interface.
DefaultOWLObjectProperty(KnowledgeBase, FrameID) - Constructor for class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLObjectProperty
DefaultOWLObjectProperty() - Constructor for class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLObjectProperty
DefaultOWLOntology - Class in edu.stanford.smi.protegex.owl.model.impl
  The default implementation of the OWLObjectProperty interface.
DefaultOWLOntology(KnowledgeBase, FrameID) - Constructor for class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLOntology
DefaultOWLOntology() - Constructor for class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLOntology
DefaultOWLProject - Class in edu.stanford.smi.protegex.owl.model.project
  An OWLProject wrapping a traditional Protege Project.
DefaultOWLProject(Project) - Constructor for class edu.stanford.smi.protegex.owl.model.project.DefaultOWLProject
DefaultOWLSomeValuesFrom - Class in edu.stanford.smi.protegex.owl.model.impl
  The default implementation of OWLSomeValuesFrom.
DefaultOWLSomeValuesFrom(KnowledgeBase, FrameID) - Constructor for class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLSomeValuesFrom
DefaultOWLSomeValuesFrom() - Constructor for class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLSomeValuesFrom
DefaultOWLTableTransferHandler - Class in edu.stanford.smi.protegex.owl.ui.owltable
  A default OWLTableTransferHandler that assumes that the class maintain their rows after changing something.
DefaultOWLTableTransferHandler(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.ui.owltable.DefaultOWLTableTransferHandler
DefaultOWLTestResult - Class in edu.stanford.smi.protegex.owl.testing
DefaultOWLTestResult(String, RDFResource, int, OWLTest) - Constructor for class edu.stanford.smi.protegex.owl.testing.DefaultOWLTestResult
DefaultOWLTestResult(String, RDFResource, int, OWLTest, Icon) - Constructor for class edu.stanford.smi.protegex.owl.testing.DefaultOWLTestResult
DefaultOWLUnionClass - Class in edu.stanford.smi.protegex.owl.model.impl
  The default implementation of OWLUnionClass.
DefaultOWLUnionClass(KnowledgeBase, FrameID) - Constructor for class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLUnionClass
DefaultOWLUnionClass() - Constructor for class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLUnionClass
DefaultProduct - Class in edu.stanford.smi.protegex.owlx.examples.javaDemo.model.impl
  Generated by Protege-OWL (http://protege.stanford.edu/plugins/owl).
DefaultProduct(OWLModel, FrameID) - Constructor for class edu.stanford.smi.protegex.owlx.examples.javaDemo.model.impl.DefaultProduct
DefaultProduct() - Constructor for class edu.stanford.smi.protegex.owlx.examples.javaDemo.model.impl.DefaultProduct
DefaultPropertyFind - Class in edu.stanford.smi.protegex.owl.ui.search.finder
DefaultPropertyFind(OWLModel, int) - Constructor for class edu.stanford.smi.protegex.owl.ui.search.finder.DefaultPropertyFind
DefaultPropertyValueValidator - Class in edu.stanford.smi.protegex.owl.model.validator
DefaultPropertyValueValidator() - Constructor for class edu.stanford.smi.protegex.owl.model.validator.DefaultPropertyValueValidator
DefaultProtegeDIGReasoner - Class in edu.stanford.smi.protegex.owl.inference.dig
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Jun 14, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
DefaultProtegeDIGReasoner() - Constructor for class edu.stanford.smi.protegex.owl.inference.dig.DefaultProtegeDIGReasoner
DefaultProtegeOWLParserLogger - Class in edu.stanford.smi.protegex.owl.jena.parser
DefaultProtegeOWLParserLogger() - Constructor for class edu.stanford.smi.protegex.owl.jena.parser.DefaultProtegeOWLParserLogger
DefaultProtegeOWLReasoner - Class in edu.stanford.smi.protegex.owl.inference.protegeowl
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Jun 14, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
DefaultProtegeOWLReasoner(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.inference.protegeowl.DefaultProtegeOWLReasoner
DefaultPurchase - Class in edu.stanford.smi.protegex.owlx.examples.javaDemo.model.impl
  Generated by Protege-OWL (http://protege.stanford.edu/plugins/owl).
DefaultPurchase(OWLModel, FrameID) - Constructor for class edu.stanford.smi.protegex.owlx.examples.javaDemo.model.impl.DefaultPurchase
DefaultPurchase() - Constructor for class edu.stanford.smi.protegex.owlx.examples.javaDemo.model.impl.DefaultPurchase
DefaultRDFExternalResource - Class in edu.stanford.smi.protegex.owl.model.impl
DefaultRDFExternalResource(KnowledgeBase, FrameID) - Constructor for class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFExternalResource
DefaultRDFExternalResource() - Constructor for class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFExternalResource
DefaultRDFIndividual - Class in edu.stanford.smi.protegex.owl.model.impl
DefaultRDFIndividual(KnowledgeBase, FrameID) - Constructor for class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFIndividual
DefaultRDFIndividual() - Constructor for class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFIndividual
DefaultRDFList - Class in edu.stanford.smi.protegex.owl.model.impl
DefaultRDFList(KnowledgeBase, FrameID) - Constructor for class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFList
DefaultRDFList() - Constructor for class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFList
DefaultRDFProperty - Class in edu.stanford.smi.protegex.owl.model.impl
  The default implementation of the OWLProperty interface.
DefaultRDFProperty(KnowledgeBase, FrameID) - Constructor for class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
DefaultRDFProperty() - Constructor for class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
DefaultRDFSDatatype - Class in edu.stanford.smi.protegex.owl.model.impl
DefaultRDFSDatatype(KnowledgeBase, FrameID) - Constructor for class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFSDatatype
DefaultRDFSDatatype() - Constructor for class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFSDatatype
DefaultRDFSDatatypeFactory - Class in edu.stanford.smi.protegex.owl.model.impl
DefaultRDFSDatatypeFactory(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFSDatatypeFactory
DefaultRDFSLiteral - Class in edu.stanford.smi.protegex.owl.model.impl
DefaultRDFSLiteral(OWLModel, String) - Constructor for class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFSLiteral
DefaultRDFSNamedClass - Class in edu.stanford.smi.protegex.owl.model.impl
DefaultRDFSNamedClass(KnowledgeBase, FrameID) - Constructor for class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFSNamedClass
DefaultRDFSNamedClass() - Constructor for class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFSNamedClass
DefaultRDFUntypedResource - Class in edu.stanford.smi.protegex.owl.model.impl
  The default implementation of RDFUntypedResource.
DefaultRDFUntypedResource(KnowledgeBase, FrameID) - Constructor for class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFUntypedResource
DefaultRDFUntypedResource() - Constructor for class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFUntypedResource
DefaultReasonerIdentity - Class in edu.stanford.smi.protegex.owl.inference.dig.reasoner
DefaultReasonerIdentity() - Constructor for class edu.stanford.smi.protegex.owl.inference.dig.reasoner.DefaultReasonerIdentity
DefaultReasonerIdentity(String) - Constructor for class edu.stanford.smi.protegex.owl.inference.dig.reasoner.DefaultReasonerIdentity
DefaultResourcePanelFactory - Class in edu.stanford.smi.protegex.owl.ui.resourcedisplay
DefaultResourcePanelFactory() - Constructor for class edu.stanford.smi.protegex.owl.ui.resourcedisplay.DefaultResourcePanelFactory
DefaultSelectionDialogFactory - Class in edu.stanford.smi.protegex.owl.ui.dialogs
  The default implementation based on the core Protege dialogs.
DefaultSelectionDialogFactory() - Constructor for class edu.stanford.smi.protegex.owl.ui.dialogs.DefaultSelectionDialogFactory
DefaultSettingsMap - Class in edu.stanford.smi.protegex.owl.model.project
  An OWLProject wrapping a traditional Protege Project.
DefaultSettingsMap(PropertyList) - Constructor for class edu.stanford.smi.protegex.owl.model.project.DefaultSettingsMap
defaultSlotMetaClsChanged(KnowledgeBaseEvent) - Method in class edu.stanford.smi.protegex.owl.model.event.ModelAdapter
  Deprecated.
defaultSlotMetaClsChanged(KnowledgeBaseEvent) - Method in interface edu.stanford.smi.protegex.owl.model.event.ProtegeKnowledgeBaseListener
  Deprecated. not needed
DefaultSWRLAtom - Class in edu.stanford.smi.protegex.owl.swrl.model.impl
DefaultSWRLAtom(KnowledgeBase, FrameID) - Constructor for class edu.stanford.smi.protegex.owl.swrl.model.impl.DefaultSWRLAtom
DefaultSWRLAtom() - Constructor for class edu.stanford.smi.protegex.owl.swrl.model.impl.DefaultSWRLAtom
DefaultSWRLAtomList - Class in edu.stanford.smi.protegex.owl.swrl.model.impl
DefaultSWRLAtomList(KnowledgeBase, FrameID) - Constructor for class edu.stanford.smi.protegex.owl.swrl.model.impl.DefaultSWRLAtomList
DefaultSWRLAtomList() - Constructor for class edu.stanford.smi.protegex.owl.swrl.model.impl.DefaultSWRLAtomList
DefaultSWRLBuiltin - Class in edu.stanford.smi.protegex.owl.swrl.model.impl
DefaultSWRLBuiltin(KnowledgeBase, FrameID) - Constructor for class edu.stanford.smi.protegex.owl.swrl.model.impl.DefaultSWRLBuiltin
DefaultSWRLBuiltin() - Constructor for class edu.stanford.smi.protegex.owl.swrl.model.impl.DefaultSWRLBuiltin
DefaultSWRLBuiltinAtom - Class in edu.stanford.smi.protegex.owl.swrl.model.impl
DefaultSWRLBuiltinAtom(KnowledgeBase, FrameID) - Constructor for class edu.stanford.smi.protegex.owl.swrl.model.impl.DefaultSWRLBuiltinAtom
DefaultSWRLBuiltinAtom() - Constructor for class edu.stanford.smi.protegex.owl.swrl.model.impl.DefaultSWRLBuiltinAtom
DefaultSWRLClassAtom - Class in edu.stanford.smi.protegex.owl.swrl.model.impl
DefaultSWRLClassAtom(KnowledgeBase, FrameID) - Constructor for class edu.stanford.smi.protegex.owl.swrl.model.impl.DefaultSWRLClassAtom
DefaultSWRLClassAtom() - Constructor for class edu.stanford.smi.protegex.owl.swrl.model.impl.DefaultSWRLClassAtom
DefaultSWRLDataRangeAtom - Class in edu.stanford.smi.protegex.owl.swrl.model.impl
DefaultSWRLDataRangeAtom(KnowledgeBase, FrameID) - Constructor for class edu.stanford.smi.protegex.owl.swrl.model.impl.DefaultSWRLDataRangeAtom
DefaultSWRLDataRangeAtom() - Constructor for class edu.stanford.smi.protegex.owl.swrl.model.impl.DefaultSWRLDataRangeAtom
DefaultSWRLDatavaluedPropertyAtom - Class in edu.stanford.smi.protegex.owl.swrl.model.impl
DefaultSWRLDatavaluedPropertyAtom(KnowledgeBase, FrameID) - Constructor for class edu.stanford.smi.protegex.owl.swrl.model.impl.DefaultSWRLDatavaluedPropertyAtom
DefaultSWRLDatavaluedPropertyAtom() - Constructor for class edu.stanford.smi.protegex.owl.swrl.model.impl.DefaultSWRLDatavaluedPropertyAtom
DefaultSWRLDifferentIndividualsAtom - Class in edu.stanford.smi.protegex.owl.swrl.model.impl
DefaultSWRLDifferentIndividualsAtom(KnowledgeBase, FrameID) - Constructor for class edu.stanford.smi.protegex.owl.swrl.model.impl.DefaultSWRLDifferentIndividualsAtom
DefaultSWRLDifferentIndividualsAtom() - Constructor for class edu.stanford.smi.protegex.owl.swrl.model.impl.DefaultSWRLDifferentIndividualsAtom
DefaultSWRLImp - Class in edu.stanford.smi.protegex.owl.swrl.model.impl
DefaultSWRLImp(KnowledgeBase, FrameID) - Constructor for class edu.stanford.smi.protegex.owl.swrl.model.impl.DefaultSWRLImp
DefaultSWRLImp() - Constructor for class edu.stanford.smi.protegex.owl.swrl.model.impl.DefaultSWRLImp
DefaultSWRLIndividualPropertyAtom - Class in edu.stanford.smi.protegex.owl.swrl.model.impl
DefaultSWRLIndividualPropertyAtom(KnowledgeBase, FrameID) - Constructor for class edu.stanford.smi.protegex.owl.swrl.model.impl.DefaultSWRLIndividualPropertyAtom
DefaultSWRLIndividualPropertyAtom() - Constructor for class edu.stanford.smi.protegex.owl.swrl.model.impl.DefaultSWRLIndividualPropertyAtom
DefaultSWRLSameIndividualAtom - Class in edu.stanford.smi.protegex.owl.swrl.model.impl
DefaultSWRLSameIndividualAtom(KnowledgeBase, FrameID) - Constructor for class edu.stanford.smi.protegex.owl.swrl.model.impl.DefaultSWRLSameIndividualAtom
DefaultSWRLSameIndividualAtom() - Constructor for class edu.stanford.smi.protegex.owl.swrl.model.impl.DefaultSWRLSameIndividualAtom
DefaultSWRLVariable - Class in edu.stanford.smi.protegex.owl.swrl.model.impl
DefaultSWRLVariable(KnowledgeBase, FrameID) - Constructor for class edu.stanford.smi.protegex.owl.swrl.model.impl.DefaultSWRLVariable
DefaultSWRLVariable() - Constructor for class edu.stanford.smi.protegex.owl.swrl.model.impl.DefaultSWRLVariable
DefaultTaskManager - Class in edu.stanford.smi.protegex.owl.model
  The default implementation of TaskManager.
DefaultTaskManager() - Constructor for class edu.stanford.smi.protegex.owl.model.DefaultTaskManager
DefaultTestPerson - Class in edu.stanford.smi.protegex.owl.model.factory.tests.impl
DefaultTestPerson(KnowledgeBase, FrameID) - Constructor for class edu.stanford.smi.protegex.owl.model.factory.tests.impl.DefaultTestPerson
DefaultTestPerson() - Constructor for class edu.stanford.smi.protegex.owl.model.factory.tests.impl.DefaultTestPerson
DefaultTriple - Class in edu.stanford.smi.protegex.owl.model.triplestore.impl
DefaultTriple(RDFResource, RDFProperty, Object) - Constructor for class edu.stanford.smi.protegex.owl.model.triplestore.impl.DefaultTriple
DefaultTuple - Class in edu.stanford.smi.protegex.owl.model.triplestore.impl
DefaultTuple(RDFResource, RDFProperty) - Constructor for class edu.stanford.smi.protegex.owl.model.triplestore.impl.DefaultTuple
DefaultUncaughtExceptionHandler - Class in edu.stanford.smi.protegex.owl.inference.util
DefaultUncaughtExceptionHandler() - Constructor for class edu.stanford.smi.protegex.owl.inference.util.DefaultUncaughtExceptionHandler
DefaultUnresolvedImportHandler - Class in edu.stanford.smi.protegex.owl.jena.parser
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Sep 21, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
DefaultUnresolvedImportHandler() - Constructor for class edu.stanford.smi.protegex.owl.jena.parser.DefaultUnresolvedImportHandler
DefaultVeryGoodCustomer - Class in edu.stanford.smi.protegex.owlx.examples.javaDemo.model.impl
  Generated by Protege-OWL (http://protege.stanford.edu/plugins/owl).
DefaultVeryGoodCustomer(OWLModel, FrameID) - Constructor for class edu.stanford.smi.protegex.owlx.examples.javaDemo.model.impl.DefaultVeryGoodCustomer
DefaultVeryGoodCustomer() - Constructor for class edu.stanford.smi.protegex.owlx.examples.javaDemo.model.impl.DefaultVeryGoodCustomer
DefaultWidgetClassMapper - Class in edu.stanford.smi.protegex.owl.ui.forms
DefaultWidgetClassMapper() - Constructor for class edu.stanford.smi.protegex.owl.ui.forms.DefaultWidgetClassMapper
DefaultXMLWriter - Class in edu.stanford.smi.protegex.owl.writer.xml
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Mar 22, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
DefaultXMLWriter(Writer, XMLWriterNamespaceManager) - Constructor for class edu.stanford.smi.protegex.owl.writer.xml.DefaultXMLWriter
DefaultXMLWriter(Writer, XMLWriterNamespaceManager, String) - Constructor for class edu.stanford.smi.protegex.owl.writer.xml.DefaultXMLWriter
DefaultXMLWriter.XMLElement - Class in edu.stanford.smi.protegex.owl.writer.xml
DefaultXMLWriter.XMLElement(String) - Constructor for class edu.stanford.smi.protegex.owl.writer.xml.DefaultXMLWriter.XMLElement
DefaultXMLWriter.XMLElement(String, int) - Constructor for class edu.stanford.smi.protegex.owl.writer.xml.DefaultXMLWriter.XMLElement
DEFINED - Static variable in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGVocabulary.Language
DEFINED_OWL_CLASS - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
DelegatingTripleWriter - Class in edu.stanford.smi.protegex.owl.model.triplestore
  A TripleWriter that forwards all calls into a delegate TripleWriter.
DelegatingTripleWriter(TripleWriter) - Constructor for class edu.stanford.smi.protegex.owl.model.triplestore.DelegatingTripleWriter
delete() - Method in interface edu.stanford.smi.protegex.owl.model.RDFResource
  Deletes this resource from the model.
DELETE - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
delete(OWLAnonymousClass, OWLAnonymousClass) - Method in interface edu.stanford.smi.protegex.owl.util.DeleteAnonymousClassHook
DELETE_OVERLAY - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
deleteAction - Variable in class edu.stanford.smi.protegex.owl.ui.cls.AssertedClassesPanel
deleteAllFrames(OWLModel) - Static method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
  Deletes all Frames that are not system classes (including OWL system classes).
deleteAllowed() - Method in class edu.stanford.smi.protegex.owl.jena.graph.ProtegeCapabilities
deleteAllowed(boolean) - Method in class edu.stanford.smi.protegex.owl.jena.graph.ProtegeCapabilities
DeleteAllPropertyValuesAction - Class in edu.stanford.smi.protegex.owl.ui.actions
DeleteAllPropertyValuesAction(String, RDFProperty, Collection, String) - Constructor for class edu.stanford.smi.protegex.owl.ui.actions.DeleteAllPropertyValuesAction
DeleteAllPropertyValuesAction(String, RDFProperty, Collection, Icon) - Constructor for class edu.stanford.smi.protegex.owl.ui.actions.DeleteAllPropertyValuesAction
DeleteAnonymousClassHook - Interface in edu.stanford.smi.protegex.owl.util
DeleteAnonymousClassUtil - Class in edu.stanford.smi.protegex.owl.util
DeleteAnonymousClassUtil() - Constructor for class edu.stanford.smi.protegex.owl.util.DeleteAnonymousClassUtil
DeleteClassAction - Class in edu.stanford.smi.protegex.owl.ui.cls
  A ResourceAction for deleted the selected named classes inside a ClassTreePanel.
DeleteClassAction() - Constructor for class edu.stanford.smi.protegex.owl.ui.cls.DeleteClassAction
deleteCls(Cls) - Method in class edu.stanford.smi.protegex.owl.model.framestore.LocalClassificationFrameStore
deleteCls(Cls) - Method in class edu.stanford.smi.protegex.owl.model.framestore.OWLFrameStore
deleteCls(Cls) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
deleteCls(Cls) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
deleted(FrameEvent) - Method in class edu.stanford.smi.protegex.owl.model.event.PropertyValueAdapter
  Deprecated.
deleted(FrameEvent) - Method in interface edu.stanford.smi.protegex.owl.model.event.ProtegeFrameListener
  Deprecated. did not work in Protege anyway
deleteFacet(Facet) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not needed in OWL
deleteFrame(Frame) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
deleteImp() - Method in class edu.stanford.smi.protegex.owl.swrl.model.impl.DefaultSWRLImp
deleteImp(String) - Method in class edu.stanford.smi.protegex.owl.swrl.model.SWRLFactory
deleteImp() - Method in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLImp
  Deletes this and all depending objects of the rule.
deleteImps() - Method in class edu.stanford.smi.protegex.owl.swrl.model.SWRLFactory
deleteInstance(Instance) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
DeleteMatchingPropertyValuesAction - Class in edu.stanford.smi.protegex.owl.ui.actions
DeleteMatchingPropertyValuesAction(String, RDFProperty, Object, Collection) - Constructor for class edu.stanford.smi.protegex.owl.ui.actions.DeleteMatchingPropertyValuesAction
DeleteMatchingPropertyValuesAction(String, RDFProperty, Object, Collection, String) - Constructor for class edu.stanford.smi.protegex.owl.ui.actions.DeleteMatchingPropertyValuesAction
DeletePropertyAction - Class in edu.stanford.smi.protegex.owl.ui.actions
DeletePropertyAction() - Constructor for class edu.stanford.smi.protegex.owl.ui.actions.DeletePropertyAction
deleteQuantifierRestrictions(OWLProperty) - Method in class edu.stanford.smi.protegex.owl.model.framestore.OWLFrameStore
  Deletes all QuantifierRestrictions (and the expressions where they are used) which restrict a given propertyerty.
deleteRow(int) - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.DisjointClassesTableModel
deleteRow(int) - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.PropertiesDefinitionTableModel
deleteRow(int) - Method in class edu.stanford.smi.protegex.owl.ui.components.triples.TriplesTableModel
deleteRow(int) - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTableModel
deleteRow(int, boolean) - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTableModel
deleteRow(int) - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.imports.ImportsTableModel
deleteRow(int) - Method in class edu.stanford.smi.protegex.owl.ui.owltable.AbstractOWLTableModel
  Deletes the superclass in a given row.
deleteRow(int) - Method in interface edu.stanford.smi.protegex.owl.ui.owltable.OWLTableModel
DeleteRowAction - Class in edu.stanford.smi.protegex.owl.ui.classform.component.property
DeleteRowAction(PropertyFormTable) - Constructor for class edu.stanford.smi.protegex.owl.ui.classform.component.property.DeleteRowAction
DeleteRowAction - Class in edu.stanford.smi.protegex.owl.ui.owltable
  A OWLTableAction that deletes the selected row from the table.
DeleteRowAction(OWLTable) - Constructor for class edu.stanford.smi.protegex.owl.ui.owltable.DeleteRowAction
DeleteRuleAction - Class in edu.stanford.smi.protegex.owl.swrl.ui.table
DeleteRuleAction(SWRLTable) - Constructor for class edu.stanford.smi.protegex.owl.swrl.ui.table.DeleteRuleAction
deleteSimpleInstance(SimpleInstance) - Method in class edu.stanford.smi.protegex.owl.model.framestore.OWLFrameStore
deleteSlot(Slot) - Method in class edu.stanford.smi.protegex.owl.model.framestore.OWLFrameStore
  Deletes the depending classes (anonymous domains and ranges) of the slot being deleted.
deleteSlot(Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
DeleteTripleAction - Class in edu.stanford.smi.protegex.owl.ui.actions.triple
DeleteTripleAction() - Constructor for class edu.stanford.smi.protegex.owl.ui.actions.triple.DeleteTripleAction
DeleteTripleAction - Class in edu.stanford.smi.protegex.owl.ui.components.triples
DeleteTripleAction(TriplesTable) - Constructor for class edu.stanford.smi.protegex.owl.ui.components.triples.DeleteTripleAction
DeleteTripleAction(TriplesTable, String, Icon) - Constructor for class edu.stanford.smi.protegex.owl.ui.components.triples.DeleteTripleAction
deleteTripleStore(TripleStore) - Method in class edu.stanford.smi.protegex.owl.model.triplestore.impl.TripleStoreModelImpl
deleteTripleStore(TripleStore) - Method in interface edu.stanford.smi.protegex.owl.model.triplestore.TripleStoreModel
  Deletes an imported TripleStore.
deleteTripleStore(TripleStore) - Method in class edu.stanford.smi.protegex.owl.server.triplestore.ClientTripleStoreModel
deleteValue() - Method in class edu.stanford.smi.protegex.owl.ui.widget.OWLDateTimeWidget
deleteValue() - Method in class edu.stanford.smi.protegex.owl.ui.widget.OWLDateWidget
DeleteValueAction - Class in edu.stanford.smi.protegex.owl.ui.components.triples
  Deprecated. should be deleted
DeleteValueAction(TriplesTable) - Constructor for class edu.stanford.smi.protegex.owl.ui.components.triples.DeleteValueAction
  Deprecated.
delimiters - Static variable in class edu.stanford.smi.protegex.owl.swrl.parser.SWRLParser
DependentMatrixColumn - Interface in edu.stanford.smi.protegex.owl.ui.matrix
  A MatrixColumn that needs to be closed if a certain instance has been deleted.
DependentMatrixFilter - Interface in edu.stanford.smi.protegex.owl.ui.matrix
dependsOn(Graph) - Method in class edu.stanford.smi.protegex.owl.jena.graph.ProtegeGraph
Deprecatable - Interface in edu.stanford.smi.protegex.owl.model
  A common interface for resources that can be deprecated, i.e.
DEPRECATED_CLASS - Static variable in interface edu.stanford.smi.protegex.owl.model.OWLNames.Cls
DEPRECATED_PROPERTY - Static variable in interface edu.stanford.smi.protegex.owl.model.OWLNames.Cls
DeprecationOWLTest - Class in edu.stanford.smi.protegex.owl.testing.todo
DeprecationOWLTest() - Constructor for class edu.stanford.smi.protegex.owl.testing.todo.DeprecationOWLTest
dequoteIdentifier(String) - Static method in class edu.stanford.smi.protegex.owl.model.classparser.ParserUtils
DESCENDANTS - Static variable in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGVocabulary.Ask
DESCRIPTION - Static variable in interface edu.stanford.smi.protegex.owl.model.RDFNames.Cls
descriptionChanged(ReasonerTaskEvent) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.ClassifyTaxonomyTask
descriptionChanged(ReasonerTaskEvent) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.ClassifyTaxonomyTask
descriptionChanged(ReasonerTaskEvent) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.ReasonerTaskAdapter
descriptionChanged(ReasonerTaskEvent) - Method in interface edu.stanford.smi.protegex.owl.inference.protegeowl.task.ReasonerTaskListener
DESCRIPTOR - Static variable in class edu.stanford.smi.protegex.owl.repository.impl.DublinCoreDLVersionRedirectRepository
detachDefaultLanguageListener() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
detachListeners(Cls) - Method in class edu.stanford.smi.protegex.owl.ui.cls.ClassTreeWithBrowserTextNode
Difference - Static variable in class edu.stanford.smi.protegex.owl.swrl.model.SQWRLNames
DIFFERENT_FROM - Static variable in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGVocabulary.Tell
DIFFERENT_FROM - Static variable in interface edu.stanford.smi.protegex.owl.model.OWLNames.Slot
DIFFERENT_INDIVIDUALS_ATOM - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.Cls
DifferentFrom_between_Classes - Static variable in class edu.stanford.smi.protegex.owl.ui.profiles.OWLProfiles
DifferentFrom_between_Properties - Static variable in class edu.stanford.smi.protegex.owl.ui.profiles.OWLProfiles
DIGAction - Class in edu.stanford.smi.protegex.owl.ui.menu.code
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Sep 15, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
DIGAction() - Constructor for class edu.stanford.smi.protegex.owl.ui.menu.code.DIGAction
DIGDataTypes - Class in edu.stanford.smi.protegex.owl.inference.dig.translator
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Aug 30, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
DIGDataTypes(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.inference.dig.translator.DIGDataTypes
DIGError - Class in edu.stanford.smi.protegex.owl.inference.dig.exception
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Jun 19, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
DIGError(String, String, int) - Constructor for class edu.stanford.smi.protegex.owl.inference.dig.exception.DIGError
DIGError(String, String, String) - Constructor for class edu.stanford.smi.protegex.owl.inference.dig.exception.DIGError
DIGErrorException - Exception in edu.stanford.smi.protegex.owl.inference.dig.exception
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Jun 14, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
DIGErrorException(ArrayList) - Constructor for exception edu.stanford.smi.protegex.owl.inference.dig.exception.DIGErrorException
DIGErrorExceptionLogRecord - Class in edu.stanford.smi.protegex.owl.inference.protegeowl.log
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Aug 26, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
DIGErrorExceptionLogRecord(DIGReasonerException, ReasonerLogRecord) - Constructor for class edu.stanford.smi.protegex.owl.inference.protegeowl.log.DIGErrorExceptionLogRecord
DIGIT - Static variable in interface edu.stanford.smi.protegex.owl.model.classparser.compact.CompactParserConstants
DIGIT - Static variable in interface edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxParserConstants
DIGIT - Static variable in interface edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParserConstants
digLogger - Static variable in interface edu.stanford.smi.protegex.owl.inference.dig.reasoner.DIGReasoner
DIGLogger - Class in edu.stanford.smi.protegex.owl.inference.dig.reasoner.logger
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Feb 15, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
DIGLoggerListener - Interface in edu.stanford.smi.protegex.owl.inference.dig.reasoner.logger
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Feb 15, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
DIGQueryResponse - Interface in edu.stanford.smi.protegex.owl.inference.dig.translator
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Jul 19, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
DIGReasoner - Interface in edu.stanford.smi.protegex.owl.inference.dig.reasoner
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Jun 14, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
DIGReasonerException - Exception in edu.stanford.smi.protegex.owl.inference.dig.exception
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Jun 4, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
DIGReasonerException(String) - Constructor for exception edu.stanford.smi.protegex.owl.inference.dig.exception.DIGReasonerException
DIGReasonerException(String, Throwable) - Constructor for exception edu.stanford.smi.protegex.owl.inference.dig.exception.DIGReasonerException
DIGReasonerIdentity - Class in edu.stanford.smi.protegex.owl.inference.dig.reasoner
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Jun 4, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
DIGReasonerIdentity() - Constructor for class edu.stanford.smi.protegex.owl.inference.dig.reasoner.DIGReasonerIdentity
DIGReasonerPreferences - Class in edu.stanford.smi.protegex.owl.inference.dig.reasoner
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Feb 15, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
DIGRenderer - Interface in edu.stanford.smi.protegex.owl.inference.dig.translator
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Sep 4, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm

  Most of the methods of the DIGRenderer produce XML document elements to represent different Protege-OWL classes in the DIG format.
DIGTranslator - Interface in edu.stanford.smi.protegex.owl.inference.dig.translator
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Jun 28, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm

  The DIGTranslator represents a converter that translates back and forth between the OWLModel and DIG.
DIGTranslatorFactory - Class in edu.stanford.smi.protegex.owl.inference.dig.translator
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Sep 9, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm

  The factory responsible for creating instances of DIGTranslator.
DIGTranslatorFactory() - Constructor for class edu.stanford.smi.protegex.owl.inference.dig.translator.DIGTranslatorFactory
DIGTranslatorPreferences - Class in edu.stanford.smi.protegex.owl.inference.dig.translator
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Oct 24, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
DIGVocabulary - Interface in edu.stanford.smi.protegex.owl.inference.dig.translator
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Jun 4, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm

  This class contains the vocabulary used by the DIG Interface
DIGVocabulary.Ask - Interface in edu.stanford.smi.protegex.owl.inference.dig.translator
  Supported ask operations/queries
DIGVocabulary.Language - Interface in edu.stanford.smi.protegex.owl.inference.dig.translator
  Supported language elements
DIGVocabulary.Management - Interface in edu.stanford.smi.protegex.owl.inference.dig.translator
DIGVocabulary.Response - Interface in edu.stanford.smi.protegex.owl.inference.dig.translator
  Response elements
DIGVocabulary.Tell - Interface in edu.stanford.smi.protegex.owl.inference.dig.translator
  Supported tell operations
DIRECT_INFERENCE_GROUP - Static variable in interface edu.stanford.smi.protegex.owl.ui.actions.OWLModelActionConstants
DIRECTED_BINARY_RELATION - Static variable in interface edu.stanford.smi.protegex.owl.model.ProtegeNames.Cls
directInstanceAdded(ClsEvent) - Method in class edu.stanford.smi.protegex.owl.model.event.ClassAdapter
  Deprecated.
directInstanceAdded(ClsEvent) - Method in interface edu.stanford.smi.protegex.owl.model.event.ProtegeClsListener
  Deprecated.
directInstanceRemoved(ClsEvent) - Method in class edu.stanford.smi.protegex.owl.model.event.ClassAdapter
  Deprecated.
directInstanceRemoved(ClsEvent) - Method in interface edu.stanford.smi.protegex.owl.model.event.ProtegeClsListener
  Deprecated.
directSubclassAdded(ClsEvent) - Method in class edu.stanford.smi.protegex.owl.model.event.ClassAdapter
  Deprecated.
directSubclassAdded(ClsEvent) - Method in interface edu.stanford.smi.protegex.owl.model.event.ProtegeClsListener
  Deprecated.
directSubclassMoved(ClsEvent) - Method in class edu.stanford.smi.protegex.owl.model.event.ClassAdapter
  Deprecated.
directSubclassMoved(ClsEvent) - Method in interface edu.stanford.smi.protegex.owl.model.event.ProtegeClsListener
  Deprecated. not supported by OWL
directSubclassRemoved(ClsEvent) - Method in class edu.stanford.smi.protegex.owl.model.event.ClassAdapter
  Deprecated.
directSubclassRemoved(ClsEvent) - Method in interface edu.stanford.smi.protegex.owl.model.event.ProtegeClsListener
  Deprecated.
directSubslotAdded(SlotEvent) - Method in class edu.stanford.smi.protegex.owl.model.event.PropertyAdapter
  Deprecated.
directSubslotAdded(SlotEvent) - Method in interface edu.stanford.smi.protegex.owl.model.event.ProtegeSlotListener
  Deprecated.
directSubslotMoved(SlotEvent) - Method in class edu.stanford.smi.protegex.owl.model.event.PropertyAdapter
  Deprecated.
directSubslotMoved(SlotEvent) - Method in interface edu.stanford.smi.protegex.owl.model.event.ProtegeSlotListener
  Deprecated. not supported in OWL
directSubslotRemoved(SlotEvent) - Method in class edu.stanford.smi.protegex.owl.model.event.PropertyAdapter
  Deprecated.
directSubslotRemoved(SlotEvent) - Method in interface edu.stanford.smi.protegex.owl.model.event.ProtegeSlotListener
  Deprecated.
directSuperclassAdded(ClsEvent) - Method in class edu.stanford.smi.protegex.owl.model.event.ClassAdapter
  Deprecated.
directSuperclassAdded(ClsEvent) - Method in interface edu.stanford.smi.protegex.owl.model.event.ProtegeClsListener
  Deprecated.
directSuperclassRemoved(ClsEvent) - Method in class edu.stanford.smi.protegex.owl.model.event.ClassAdapter
  Deprecated.
directSuperclassRemoved(ClsEvent) - Method in interface edu.stanford.smi.protegex.owl.model.event.ProtegeClsListener
  Deprecated.
directSuperslotAdded(SlotEvent) - Method in class edu.stanford.smi.protegex.owl.model.event.PropertyAdapter
  Deprecated.
directSuperslotAdded(SlotEvent) - Method in interface edu.stanford.smi.protegex.owl.model.event.ProtegeSlotListener
  Deprecated.
directSuperslotRemoved(SlotEvent) - Method in class edu.stanford.smi.protegex.owl.model.event.PropertyAdapter
  Deprecated.
directSuperslotRemoved(SlotEvent) - Method in interface edu.stanford.smi.protegex.owl.model.event.ProtegeSlotListener
  Deprecated.
directTypeAdded(InstanceEvent) - Method in interface edu.stanford.smi.protegex.owl.model.event.ProtegeInstanceListener
  Deprecated.
directTypeRemoved(InstanceEvent) - Method in interface edu.stanford.smi.protegex.owl.model.event.ProtegeInstanceListener
  Deprecated.
disable() - Method in class edu.stanford.smi.protegex.owl.swrl.model.impl.DefaultSWRLImp
disable(String) - Method in class edu.stanford.smi.protegex.owl.swrl.model.impl.DefaultSWRLImp
disable(Set<String>) - Method in class edu.stanford.smi.protegex.owl.swrl.model.impl.DefaultSWRLImp
disable() - Method in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLImp
disable(String) - Method in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLImp
disable(Set<String>) - Method in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLImp
disable_tracing() - Method in class edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxParser
disable_tracing() - Method in class edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParser
disableAll() - Method in class edu.stanford.smi.protegex.owl.swrl.model.SWRLFactory
disableAll(Set<String>) - Method in class edu.stanford.smi.protegex.owl.swrl.model.SWRLFactory
disableAll(String) - Method in class edu.stanford.smi.protegex.owl.swrl.model.SWRLFactory
disableAll() - Method in class edu.stanford.smi.protegex.owl.swrl.ui.table.SWRLTableModel
disableCompListeners() - Method in class edu.stanford.smi.protegex.owl.ui.components.datarangefield.DataRangeFieldComponent
disableCompListeners() - Method in class edu.stanford.smi.protegex.owl.ui.widget.OWLDateWidget
disableComponentListeners() - Method in class edu.stanford.smi.protegex.owl.ui.components.singleliteral.AbstractSingleLiteralComponent
DISABLED_BY_USER - Static variable in class edu.stanford.smi.protegex.owl.ui.widget.OWLFormWidget
disconnect() - Method in class edu.stanford.smi.protegex.owl.repository.impl.DatabaseRepository
DISJOINT - Static variable in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGVocabulary.Ask
DISJOINT - Static variable in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGVocabulary.Tell
DISJOINT_CLASS - Static variable in class edu.stanford.smi.protegex.owl.ui.search.FindUsageTableItem
Disjoint_Classes - Static variable in class edu.stanford.smi.protegex.owl.ui.profiles.OWLProfiles
DISJOINT_WITH - Static variable in interface edu.stanford.smi.protegex.owl.model.OWLNames.Slot
DisjointClassesTableModel - Class in edu.stanford.smi.protegex.owl.ui.clsdesc
  An AbstractTableModel that represents each disjoint class with one row.
DisjointClassesTableModel() - Constructor for class edu.stanford.smi.protegex.owl.ui.clsdesc.DisjointClassesTableModel
disjointClassesWidget - Variable in class edu.stanford.smi.protegex.owl.ui.cls.AbstractClassDefinitionWidget
DisjointClassesWidget - Class in edu.stanford.smi.protegex.owl.ui.clsdesc
  An AbstractSlotWidget that displays the disjoint classes in a table.
DisjointClassesWidget() - Constructor for class edu.stanford.smi.protegex.owl.ui.clsdesc.DisjointClassesWidget
displayError() - Method in interface edu.stanford.smi.protegex.owl.ui.code.SymbolEditor
  Checks the syntax of the current input and displays the error.
displayError() - Method in class edu.stanford.smi.protegex.owl.ui.code.SymbolEditorComponent
displayError(Throwable) - Method in interface edu.stanford.smi.protegex.owl.ui.code.SymbolErrorDisplay
displayError(String) - Method in interface edu.stanford.smi.protegex.owl.ui.code.SymbolErrorDisplay
displayError(Throwable) - Method in class edu.stanford.smi.protegex.owl.ui.code.SymbolPanel
displayError(String) - Method in class edu.stanford.smi.protegex.owl.ui.code.SymbolPanel
displayError() - Method in class edu.stanford.smi.protegex.owl.ui.code.SymbolTextArea
displayError() - Method in class edu.stanford.smi.protegex.owl.ui.code.SymbolTextField
displayHostInstance(Instance) - Method in class edu.stanford.smi.protegex.owl.ui.resourcedisplay.ResourceDisplay
  Deprecated.
displayHostResource(RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.cls.ClassTree
displayHostResource(RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.cls.OWLClassesTab
displayHostResource(RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.importstree.ImportsTree
displayHostResource(RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.importstree.ImportsTreePanel
displayHostResource(RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.individuals.InstancesList
displayHostResource(RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.individuals.OWLIndividualsTab
displayHostResource(RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.OWLMetadataTab
displayHostResource(RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.properties.OWLPropertiesTab
displayHostResource(RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.properties.OWLPropertyHierarchiesPanel
displayHostResource(RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.properties.OWLSubpropertyPane
displayHostResource(RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.resourcedisplay.ResourceDisplay
displayHostResource(RDFResource) - Method in interface edu.stanford.smi.protegex.owl.ui.results.HostResourceDisplay
  Called by actions such as the view action in the FindUsagePanel or the OWLTestResultsPanel.
displayHostResource(RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.widget.OWLFormsTab
displayRowsWithProperty(OWLProperty) - Method in class edu.stanford.smi.protegex.owl.ui.conditions.AbstractConditionsWidget
displayRowsWithProperty(OWLProperty) - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTable
displayRowsWithProperty(OWLProperty) - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsWidget
displayRowsWithProperty(OWLProperty) - Method in interface edu.stanford.smi.protegex.owl.ui.conditions.PropertyConditionsDisplay
displaySemanticError(String) - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.DisjointClassesTableModel
displaySemanticError(String) - Method in class edu.stanford.smi.protegex.owl.ui.clsproperties.PropertyRestrictionsTree
displaySemanticError(String) - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTableModel
displaySemanticError(String) - Method in class edu.stanford.smi.protegex.owl.ui.owltable.AbstractOWLTableModel
displaySemanticError(String) - Method in interface edu.stanford.smi.protegex.owl.ui.owltable.OWLTableModel
  Displays an illegal assignment error dialog, e.g.
displayTriple(Triple) - Method in class edu.stanford.smi.protegex.owl.ui.components.triples.TriplesTable
displayTriple(Triple) - Method in interface edu.stanford.smi.protegex.owl.ui.results.TripleDisplay
  Attempts to display a given triple.
displayTriple(Component, Triple) - Static method in class edu.stanford.smi.protegex.owl.ui.results.TripleDisplayUtil
  Does a simple depth-first traversal into the component tree and asks all of them whether they can display a given Triple, until one of them says Yes.
dispose() - Method in class edu.stanford.smi.protegex.owl.inference.dig.DefaultProtegeDIGReasoner
dispose() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.ReasonerManager
dispose() - Method in class edu.stanford.smi.protegex.owl.inference.reasoner.AbstractProtegeReasoner
dispose() - Method in class edu.stanford.smi.protegex.owl.inference.util.ReasonerUtil
dispose() - Method in class edu.stanford.smi.protegex.owl.jena.export.AbstractJenaFileExportPlugin
dispose() - Method in class edu.stanford.smi.protegex.owl.jena.export.JenaExportPlugin
dispose() - Method in class edu.stanford.smi.protegex.owl.jena.importer.JenaImportPlugin
dispose() - Method in class edu.stanford.smi.protegex.owl.jena.parser.GlobalParserCache
dispose() - Method in class edu.stanford.smi.protegex.owl.jena.parser.MultipleTypesInstanceCache
dispose() - Static method in class edu.stanford.smi.protegex.owl.jena.parser.OWLImportsCache
dispose() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
dispose() - Method in class edu.stanford.smi.protegex.owl.model.triplestore.impl.TripleStoreImpl
dispose() - Method in class edu.stanford.smi.protegex.owl.model.triplestore.impl.TripleStoreModelImpl
dispose() - Method in interface edu.stanford.smi.protegex.owl.model.triplestore.TripleStore
  Disposes this triple store.
dispose() - Method in interface edu.stanford.smi.protegex.owl.model.triplestore.TripleStoreModel
  Cleans up all the triple stores managed by this.
dispose() - Method in class edu.stanford.smi.protegex.owl.server.triplestore.ClientTripleStoreModel
dispose() - Method in class edu.stanford.smi.protegex.owl.swrl.ui.table.SWRLResultsPanel
dispose() - Method in class edu.stanford.smi.protegex.owl.swrl.ui.table.SWRLTable
dispose() - Method in class edu.stanford.smi.protegex.owl.swrl.ui.table.SWRLTableModel
dispose() - Method in class edu.stanford.smi.protegex.owl.swrl.ui.table.SWRLTablePanel
dispose() - Method in class edu.stanford.smi.protegex.owl.swrl.ui.widget.SWRLRuleSlotWidget
dispose() - Method in class edu.stanford.smi.protegex.owl.ui.actions.AbstractOWLModelAction
dispose() - Method in class edu.stanford.smi.protegex.owl.ui.classform.component.property.PropertyFormComponent
dispose() - Method in class edu.stanford.smi.protegex.owl.ui.classform.component.property.PropertyFormTable
dispose() - Method in class edu.stanford.smi.protegex.owl.ui.classform.component.property.PropertyFormTableModel
dispose() - Method in class edu.stanford.smi.protegex.owl.ui.cls.AbstractClassDefinitionWidget
dispose() - Method in class edu.stanford.smi.protegex.owl.ui.cls.ClassTreeNode
dispose() - Method in class edu.stanford.smi.protegex.owl.ui.cls.ClassTreeWithBrowserTextNode
dispose() - Method in class edu.stanford.smi.protegex.owl.ui.cls.ClassTypeConverterWidget
dispose() - Method in class edu.stanford.smi.protegex.owl.ui.cls.HierarchyPanel
dispose() - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.ClassDescriptionWidget
dispose() - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.DisjointClassesTableModel
  Clears any dangling listeners.
dispose() - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.PropertiesSuperclassesWidget
dispose() - Method in class edu.stanford.smi.protegex.owl.ui.clsproperties.PropertyRestrictionsTree
dispose() - Method in class edu.stanford.smi.protegex.owl.ui.clsproperties.PropertyTreeNode
dispose() - Method in class edu.stanford.smi.protegex.owl.ui.clsproperties.RDFPropertiesTable
dispose() - Method in class edu.stanford.smi.protegex.owl.ui.clsproperties.RDFPropertiesTableModel
dispose() - Method in class edu.stanford.smi.protegex.owl.ui.clsproperties.RestrictionTreeNode
dispose() - Method in class edu.stanford.smi.protegex.owl.ui.components.AbstractPropertyValuesComponent
dispose() - Method in class edu.stanford.smi.protegex.owl.ui.components.multiresource.MultiResourceList
dispose() - Method in class edu.stanford.smi.protegex.owl.ui.components.multiresource.MultiResourceListModel
dispose() - Method in class edu.stanford.smi.protegex.owl.ui.components.rdflist.RDFListComponent
dispose() - Method in class edu.stanford.smi.protegex.owl.ui.components.singleresource.SingleResourceComponent
dispose() - Method in class edu.stanford.smi.protegex.owl.ui.components.triples.AbstractTriplesComponent
dispose() - Method in class edu.stanford.smi.protegex.owl.ui.components.triples.TriplesTableModel
dispose() - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTableItem
dispose() - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTableModel
dispose() - Method in class edu.stanford.smi.protegex.owl.ui.existential.ExistentialTreeNode
dispose() - Method in class edu.stanford.smi.protegex.owl.ui.explorer.ExplorerTreeNode
dispose() - Method in class edu.stanford.smi.protegex.owl.ui.explorer.ExplorerTreePanel
dispose() - Method in class edu.stanford.smi.protegex.owl.ui.importstree.ImportsTreeNode
dispose() - Method in class edu.stanford.smi.protegex.owl.ui.importstree.ImportsTreePanel
dispose() - Method in class edu.stanford.smi.protegex.owl.ui.individuals.AssertedInstancesListPanel
dispose() - Method in class edu.stanford.smi.protegex.owl.ui.individuals.InferredInstancesListPanel
dispose() - Method in class edu.stanford.smi.protegex.owl.ui.matrix.MatrixPanel
dispose() - Method in class edu.stanford.smi.protegex.owl.ui.matrix.MatrixTableModel
dispose() - Method in class edu.stanford.smi.protegex.owl.ui.menu.OWLBackwardsCompatibilityProjectFixups
dispose() - Method in class edu.stanford.smi.protegex.owl.ui.menu.OWLModelActionAction
dispose() - Method in class edu.stanford.smi.protegex.owl.ui.metadata.AnnotationTextAreaWidget
dispose() - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.alldifferent.AllDifferentEditorPanel
dispose() - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.alldifferent.AllDifferentSelectionPanel
dispose() - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.imports.ImportsPanel
dispose() - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.imports.ImportsTableModel
dispose() - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.OWLMetadataTab
dispose() - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.OWLNamespacesPanel
dispose() - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.OWLNamespacesWidget
dispose() - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.prefixes.PrefixesPanel
dispose() - Method in class edu.stanford.smi.protegex.owl.ui.navigation.NavigationHistoryManager
dispose() - Method in class edu.stanford.smi.protegex.owl.ui.navigation.TabNavigationHistorySelectable
dispose() - Method in class edu.stanford.smi.protegex.owl.ui.owltable.AbstractOWLTableModel
  Clears any dangling listeners.
dispose() - Method in interface edu.stanford.smi.protegex.owl.ui.owltable.OWLTableModel
dispose() - Method in class edu.stanford.smi.protegex.owl.ui.properties.domain.OWLDomainTableModel
dispose() - Method in class edu.stanford.smi.protegex.owl.ui.properties.domain.OWLDomainWidget
dispose() - Method in class edu.stanford.smi.protegex.owl.ui.properties.OWLInversePropertyWidget
dispose() - Method in class edu.stanford.smi.protegex.owl.ui.properties.OWLPropertySubpropertyRoot
dispose() - Method in class edu.stanford.smi.protegex.owl.ui.properties.range.UnionRangeClassesComponent
dispose() - Method in class edu.stanford.smi.protegex.owl.ui.query.SPARQLResultsPanel
dispose() - Method in class edu.stanford.smi.protegex.owl.ui.resourcedisplay.InstanceNameComponent
dispose() - Method in class edu.stanford.smi.protegex.owl.ui.resourcedisplay.InstanceNameEditor
dispose() - Method in class edu.stanford.smi.protegex.owl.ui.resourcedisplay.ResourceDisplay
dispose() - Method in interface edu.stanford.smi.protegex.owl.ui.resourcedisplay.ResourcePanel
dispose() - Method in class edu.stanford.smi.protegex.owl.ui.results.ResultsPanel
  Called when this is closed by the user.
dispose() - Method in class edu.stanford.smi.protegex.owl.ui.search.FindUsagePanel
dispose() - Method in class edu.stanford.smi.protegex.owl.ui.search.FindUsageTableModel
dispose() - Method in class edu.stanford.smi.protegex.owl.ui.subsumption.ChangedClassesPanel
dispose(OWLModel) - Static method in class edu.stanford.smi.protegex.owl.ui.subsumption.ChangedClassesPanel
  Should be called to clean up any dangling (memory-expensive) references to OWLModels when a project is closed.
dispose() - Method in class edu.stanford.smi.protegex.owl.ui.subsumption.ChangedClassesTableModel
dispose() - Method in class edu.stanford.smi.protegex.owl.ui.subsumption.SubsumptionTreeNode
dispose() - Method in class edu.stanford.smi.protegex.owl.ui.testing.AbstractOWLModelTestAction
dispose() - Method in class edu.stanford.smi.protegex.owl.ui.testing.OWLTestResultsPanel
dispose() - Method in class edu.stanford.smi.protegex.owl.ui.testing.OWLTestResultsTableModel
dispose() - Method in class edu.stanford.smi.protegex.owl.ui.widget.AbstractPropertyValuesWidget
dispose() - Method in class edu.stanford.smi.protegex.owl.ui.widget.HeaderWidget
dispose() - Method in class edu.stanford.smi.protegex.owl.ui.widget.MultiWidgetPropertyWidget
disposeReasoner(OWLModel) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.ReasonerManager
DISTINCT_MEMBERS - Static variable in interface edu.stanford.smi.protegex.owl.model.OWLNames.Slot
DIVIDE - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLConstants.BuiltIns
  Deprecated.
DIVIDE - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.CoreBuiltIns
DIVIDE_DAY_TIME_DURATION - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.CoreBuiltIns
DIVIDE_DAY_TIME_DURATIONS - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLConstants.BuiltIns
  Deprecated.
DIVIDE_YEAR_MONTH_DURATIONS - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLConstants.BuiltIns
  Deprecated.
DIVIDE_YEAR_MONTH_DURATIONS - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.CoreBuiltIns
DL_NAMESPACE - Static variable in class edu.stanford.smi.protegex.owl.inference.dig.translator.DefaultDIGTranslator
DLExpressivityChecker - Class in edu.stanford.smi.protegex.owl.model.util
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Oct 22, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
DLExpressivityChecker(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.model.util.DLExpressivityChecker
DLExpressivityExplanation - Class in edu.stanford.smi.protegex.owl.ui.metrics.lang
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Oct 22, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
DLExpressivityExplanation() - Constructor for class edu.stanford.smi.protegex.owl.ui.metrics.lang.DLExpressivityExplanation
DLExpressivityPanel - Class in edu.stanford.smi.protegex.owl.ui.metrics.lang
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Oct 22, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
DLExpressivityPanel(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.ui.metrics.lang.DLExpressivityPanel
DLExpressivityTableModel - Class in edu.stanford.smi.protegex.owl.ui.metrics.lang
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Oct 22, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
DLExpressivityTableModel(List) - Constructor for class edu.stanford.smi.protegex.owl.ui.metrics.lang.DLExpressivityTableModel
DLNamePanel - Class in edu.stanford.smi.protegex.owl.ui.metrics.lang
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Oct 22, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
DLNamePanel(List) - Constructor for class edu.stanford.smi.protegex.owl.ui.metrics.lang.DLNamePanel
DLSymbolGenerator - Class in edu.stanford.smi.protegex.owl.model.classdisplay.dl
  Author: Matthew Horridge
  The University Of Manchester
  Medical Informatics Group
  Date: Jan 25, 2006

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
DLSymbolGenerator() - Constructor for class edu.stanford.smi.protegex.owl.model.classdisplay.dl.DLSymbolGenerator
DLSyntaxBrowserTextGenerator - Class in edu.stanford.smi.protegex.owl.model.classdisplay.dl
  Author: Matthew Horridge
  The University Of Manchester
  Medical Informatics Group
  Date: Jan 25, 2006

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
DLSyntaxBrowserTextGenerator() - Constructor for class edu.stanford.smi.protegex.owl.model.classdisplay.dl.DLSyntaxBrowserTextGenerator
DLSyntaxClassDisplay - Class in edu.stanford.smi.protegex.owl.model.classdisplay.dl
  Author: Matthew Horridge
  The University Of Manchester
  Medical Informatics Group
  Date: Jan 25, 2006

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
DLSyntaxClassDisplay() - Constructor for class edu.stanford.smi.protegex.owl.model.classdisplay.dl.DLSyntaxClassDisplay
DLSyntaxClassParser - Class in edu.stanford.smi.protegex.owl.model.classparser.dl
  Author: Matthew Horridge
  The University Of Manchester
  Medical Informatics Group
  Date: Jan 25, 2006

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
DLSyntaxClassParser() - Constructor for class edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxClassParser
DLSyntaxParser - Class in edu.stanford.smi.protegex.owl.model.classparser.dl
DLSyntaxParser(InputStream) - Constructor for class edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxParser
DLSyntaxParser(InputStream, String) - Constructor for class edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxParser
DLSyntaxParser(Reader) - Constructor for class edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxParser
DLSyntaxParser(DLSyntaxParserTokenManager) - Constructor for class edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxParser
DLSyntaxParserConstants - Interface in edu.stanford.smi.protegex.owl.model.classparser.dl
DLSyntaxParserTokenManager - Class in edu.stanford.smi.protegex.owl.model.classparser.dl
DLSyntaxParserTokenManager(JavaCharStream) - Constructor for class edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxParserTokenManager
DLSyntaxParserTokenManager(JavaCharStream, int) - Constructor for class edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxParserTokenManager
DLSyntaxParserUtil - Class in edu.stanford.smi.protegex.owl.model.classparser.dl
  Author: Matthew Horridge
  The University Of Manchester
  Medical Informatics Group
  Date: Jan 25, 2006

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
DLSyntaxParserUtil() - Constructor for class edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxParserUtil
doAbortCheck() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.AbstractReasonerTask
doAbortCheck() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.AbstractReasonerTask
doFinalPostProcessing(OWLModel) - Static method in class edu.stanford.smi.protegex.owl.jena.parser.ProtegeOWLParser
doLayout() - Method in class edu.stanford.smi.protegex.owl.ui.classform.form.ClassForm
DOMAIN - Static variable in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGVocabulary.Tell
DOMAIN - Static variable in interface edu.stanford.smi.protegex.owl.model.RDFSNames.Slot
DomainUpdateFrameStore - Class in edu.stanford.smi.protegex.owl.model.framestore
DomainUpdateFrameStore(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.model.framestore.DomainUpdateFrameStore
doMove(Collection) - Method in class edu.stanford.smi.protegex.owl.ui.cls.OWLClassesTreeDragSourceListener
Done() - Method in class edu.stanford.smi.protegex.owl.model.classparser.compact.JavaCharStream
Done() - Method in class edu.stanford.smi.protegex.owl.model.classparser.dl.JavaCharStream
Done() - Method in class edu.stanford.smi.protegex.owl.model.classparser.manchester.JavaCharStream
doneSlots - Variable in class edu.stanford.smi.protegex.owl.storage.KnowledgeBaseCopier
doNotCopySlots - Static variable in class edu.stanford.smi.protegex.owl.model.util.ResourceCopier
doPostProcessing() - Method in class edu.stanford.smi.protegex.owl.jena.parser.AbstractStatefulTripleProcessor
doPostProcessing() - Method in class edu.stanford.smi.protegex.owl.jena.parser.TripleProcessor
DOUBLE - Static variable in interface edu.stanford.smi.protegex.owl.model.XSDNames
download(String, File) - Static method in class edu.stanford.smi.protegex.owl.ui.importstree.DownloadImportsAction
DownloadImportsAction - Class in edu.stanford.smi.protegex.owl.ui.importstree
DownloadImportsAction(ImportsTree) - Constructor for class edu.stanford.smi.protegex.owl.ui.importstree.DownloadImportsAction
DragClient - Interface in edu.stanford.smi.protegex.owl.ui.classform.form.drag
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Oct 9, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
DragPane - Class in edu.stanford.smi.protegex.owl.ui.classform.form.drag
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Oct 9, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
DragPane() - Constructor for class edu.stanford.smi.protegex.owl.ui.classform.form.drag.DragPane
DroolsIcons - Class in edu.stanford.smi.protegex.owl.swrl.ui.icons
DroolsIcons() - Constructor for class edu.stanford.smi.protegex.owl.swrl.ui.icons.DroolsIcons
DropDownOverlayIcon - Class in edu.stanford.smi.protegex.owl.ui.resourceselection
DropDownOverlayIcon(Icon, JButton) - Constructor for class edu.stanford.smi.protegex.owl.ui.resourceselection.DropDownOverlayIcon
DublinCoreAction - Class in edu.stanford.smi.protegex.owl.ui.menu
DublinCoreAction() - Constructor for class edu.stanford.smi.protegex.owl.ui.menu.DublinCoreAction
DublinCoreDLVersionRedirectRepository - Class in edu.stanford.smi.protegex.owl.repository.impl
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Oct 4, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
DublinCoreDLVersionRedirectRepository() - Constructor for class edu.stanford.smi.protegex.owl.repository.impl.DublinCoreDLVersionRedirectRepository
DublinCoreDLVersionRedirectRepositoryFactoryPlugin - Class in edu.stanford.smi.protegex.owl.repository.impl
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Oct 11, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
DublinCoreDLVersionRedirectRepositoryFactoryPlugin() - Constructor for class edu.stanford.smi.protegex.owl.repository.impl.DublinCoreDLVersionRedirectRepositoryFactoryPlugin
dump(Level) - Method in class edu.stanford.smi.protegex.owl.model.triplestore.impl.TripleStoreImpl
dump(Level) - Method in interface edu.stanford.smi.protegex.owl.model.triplestore.TripleStore
  Debugging only.
dumpItems() - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTableModel
dumpRDF(OntModel) - Static method in class edu.stanford.smi.protegex.owl.jena.Jena
dumpRDF(OntModel, Logger, Level) - Static method in class edu.stanford.smi.protegex.owl.jena.Jena
dumpRDF(OntModel, OutputStream) - Static method in class edu.stanford.smi.protegex.owl.jena.Jena
dumpRDFTopLevel(OntModel) - Static method in class edu.stanford.smi.protegex.owl.jena.Jena
dumpUndefTriples(Level) - Method in class edu.stanford.smi.protegex.owl.jena.parser.GlobalParserCache
DuplicateValuesFrameStore - Class in edu.stanford.smi.protegex.owl.model.framestore
DuplicateValuesFrameStore() - Constructor for class edu.stanford.smi.protegex.owl.model.framestore.DuplicateValuesFrameStore
DURATION - Static variable in interface edu.stanford.smi.protegex.owl.model.XSDNames

## E

E - Static variable in class edu.stanford.smi.protegex.owl.model.util.DLExpressivityChecker
EditableEMFGeneratorOptions - Interface in edu.stanford.smi.protegex.owl.emf
EditableExistentialTreePanel - Class in edu.stanford.smi.protegex.owl.ui.existential
EditableExistentialTreePanel(RDFSNamedClass, Slot, OWLObjectProperty) - Constructor for class edu.stanford.smi.protegex.owl.ui.existential.EditableExistentialTreePanel
EditableJavaCodeGeneratorOptions - Interface in edu.stanford.smi.protegex.owl.javacode
EditableMatrixColumn - Interface in edu.stanford.smi.protegex.owl.ui.matrix
  A MatrixColumn that can be edited by the user.
EditableSubsumptionTreePanel - Class in edu.stanford.smi.protegex.owl.ui.subsumption
  A SubsumptionTreePanel with additional support for editing the class hierarchy.
EditableSubsumptionTreePanel(Cls, Slot, Slot) - Constructor for class edu.stanford.smi.protegex.owl.ui.subsumption.EditableSubsumptionTreePanel
editAnnotations(Component, RDFResource) - Static method in class edu.stanford.smi.protegex.owl.ui.metadata.AnnotationsWidget
editAnnotations() - Method in class edu.stanford.smi.protegex.owl.ui.owltable.SymbolTable
editAnnotationsAction - Variable in class edu.stanford.smi.protegex.owl.ui.owltable.SymbolTable
editAnonExpression(OWLAnonymousClass) - Method in class edu.stanford.smi.protegex.owl.ui.individuals.AssertedTypesListPanel
editCell(Object) - Method in class edu.stanford.smi.protegex.owl.ui.components.literaltable.LiteralTable
editCell(int) - Method in class edu.stanford.smi.protegex.owl.ui.components.literaltable.LiteralTable
editCell(int) - Method in class edu.stanford.smi.protegex.owl.ui.components.triples.TriplesTable
editCellAt(int, int, EventObject) - Method in class edu.stanford.smi.protegex.owl.ui.owltable.SymbolTable
editExpression(int) - Method in class edu.stanford.smi.protegex.owl.ui.owltable.SymbolTable
  Programmatically starts editing the OWL Expression of a given row.
EDITING_MARGIN - Static variable in class edu.stanford.smi.protegex.owl.ui.components.annotations.AnnotationsValueEditor
editingStopped(ChangeEvent) - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTable
editMultiLine(RDFResource) - Method in class edu.stanford.smi.protegex.owl.swrl.ui.table.SWRLTable
editMultiLine(RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.classform.component.property.PropertyFormTable
editMultiLine() - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTable
editMultiLine(RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.owltable.OWLTable
editMultiLine() - Method in class edu.stanford.smi.protegex.owl.ui.owltable.SymbolTable
editMultiLine(RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.owltable.SymbolTable
editMultiLineAction - Variable in class edu.stanford.smi.protegex.owl.ui.owltable.SymbolTable
EditProfilePanel - Class in edu.stanford.smi.protegex.owl.ui.profiles
  A JPanel that can be used to specify the language elements supported by the user interface.
EditProfilePanel(OWLModel, OntModel, String, Collection) - Constructor for class edu.stanford.smi.protegex.owl.ui.profiles.EditProfilePanel
EditRuleAction - Class in edu.stanford.smi.protegex.owl.swrl.ui.actions
  A ResourceAction to edit a SWRLImp in a multi-line editor.
EditRuleAction() - Constructor for class edu.stanford.smi.protegex.owl.swrl.ui.actions.EditRuleAction
EditTypeAction - Class in edu.stanford.smi.protegex.owl.ui.resourcedisplay
  An Action that shows the direct type of a given Instance.
EditTypeAction(RDFResource) - Constructor for class edu.stanford.smi.protegex.owl.ui.resourcedisplay.EditTypeAction
EditTypeFormAction - Class in edu.stanford.smi.protegex.owl.ui.resourcedisplay
  An Action that shows the form editor for the direct type of a given Instance.
EditTypeFormAction(RDFResource) - Constructor for class edu.stanford.smi.protegex.owl.ui.resourcedisplay.EditTypeFormAction
editValue(Component, RDFResource, RDFProperty, Object) - Method in class edu.stanford.smi.protegex.owl.ui.editors.DateTimeValueEditor
editValue(Component, RDFResource, RDFProperty, Object) - Method in class edu.stanford.smi.protegex.owl.ui.editors.DateValueEditor
editValue(Component, RDFResource, RDFProperty, Object) - Method in interface edu.stanford.smi.protegex.owl.ui.editors.PropertyValueEditor
  Edits a given value for a given resource/predicate pair.
editValue(Component, RDFResource, RDFProperty, Object) - Method in class edu.stanford.smi.protegex.owl.ui.editors.StringValueEditor
editValue(Component, RDFResource, RDFProperty, Object) - Method in class edu.stanford.smi.protegex.owl.ui.editors.TimeValueEditor
edu.stanford.smi.protegex.owl - package edu.stanford.smi.protegex.owl
edu.stanford.smi.protegex.owl.database - package edu.stanford.smi.protegex.owl.database
edu.stanford.smi.protegex.owl.database.creator - package edu.stanford.smi.protegex.owl.database.creator
edu.stanford.smi.protegex.owl.emf - package edu.stanford.smi.protegex.owl.emf
edu.stanford.smi.protegex.owl.inference.dig - package edu.stanford.smi.protegex.owl.inference.dig
edu.stanford.smi.protegex.owl.inference.dig.exception - package edu.stanford.smi.protegex.owl.inference.dig.exception
edu.stanford.smi.protegex.owl.inference.dig.reasoner - package edu.stanford.smi.protegex.owl.inference.dig.reasoner
edu.stanford.smi.protegex.owl.inference.dig.reasoner.logger - package edu.stanford.smi.protegex.owl.inference.dig.reasoner.logger
edu.stanford.smi.protegex.owl.inference.dig.translator - package edu.stanford.smi.protegex.owl.inference.dig.translator
edu.stanford.smi.protegex.owl.inference.protegeowl - package edu.stanford.smi.protegex.owl.inference.protegeowl
edu.stanford.smi.protegex.owl.inference.protegeowl.log - package edu.stanford.smi.protegex.owl.inference.protegeowl.log
edu.stanford.smi.protegex.owl.inference.protegeowl.task - package edu.stanford.smi.protegex.owl.inference.protegeowl.task
edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner - package edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner
edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner - package edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner
edu.stanford.smi.protegex.owl.inference.reasoner - package edu.stanford.smi.protegex.owl.inference.reasoner
edu.stanford.smi.protegex.owl.inference.reasoner.exception - package edu.stanford.smi.protegex.owl.inference.reasoner.exception
edu.stanford.smi.protegex.owl.inference.ui - package edu.stanford.smi.protegex.owl.inference.ui
edu.stanford.smi.protegex.owl.inference.ui.action - package edu.stanford.smi.protegex.owl.inference.ui.action
edu.stanford.smi.protegex.owl.inference.ui.icons - package edu.stanford.smi.protegex.owl.inference.ui.icons
edu.stanford.smi.protegex.owl.inference.ui.inspector - package edu.stanford.smi.protegex.owl.inference.ui.inspector
edu.stanford.smi.protegex.owl.inference.util - package edu.stanford.smi.protegex.owl.inference.util
edu.stanford.smi.protegex.owl.javacode - package edu.stanford.smi.protegex.owl.javacode
edu.stanford.smi.protegex.owl.jena - package edu.stanford.smi.protegex.owl.jena
edu.stanford.smi.protegex.owl.jena.creator - package edu.stanford.smi.protegex.owl.jena.creator
edu.stanford.smi.protegex.owl.jena.export - package edu.stanford.smi.protegex.owl.jena.export
edu.stanford.smi.protegex.owl.jena.graph - package edu.stanford.smi.protegex.owl.jena.graph
edu.stanford.smi.protegex.owl.jena.importer - package edu.stanford.smi.protegex.owl.jena.importer
edu.stanford.smi.protegex.owl.jena.parser - package edu.stanford.smi.protegex.owl.jena.parser
edu.stanford.smi.protegex.owl.jena.protege2jena - package edu.stanford.smi.protegex.owl.jena.protege2jena
edu.stanford.smi.protegex.owl.jena.rdf2owl - package edu.stanford.smi.protegex.owl.jena.rdf2owl
edu.stanford.smi.protegex.owl.jena.triplestore - package edu.stanford.smi.protegex.owl.jena.triplestore
edu.stanford.smi.protegex.owl.jena.writersettings - package edu.stanford.smi.protegex.owl.jena.writersettings
edu.stanford.smi.protegex.owl.model - package edu.stanford.smi.protegex.owl.model
edu.stanford.smi.protegex.owl.model.classdisplay - package edu.stanford.smi.protegex.owl.model.classdisplay
edu.stanford.smi.protegex.owl.model.classdisplay.compact - package edu.stanford.smi.protegex.owl.model.classdisplay.compact
edu.stanford.smi.protegex.owl.model.classdisplay.dl - package edu.stanford.smi.protegex.owl.model.classdisplay.dl
edu.stanford.smi.protegex.owl.model.classdisplay.manchester - package edu.stanford.smi.protegex.owl.model.classdisplay.manchester
edu.stanford.smi.protegex.owl.model.classparser - package edu.stanford.smi.protegex.owl.model.classparser
edu.stanford.smi.protegex.owl.model.classparser.compact - package edu.stanford.smi.protegex.owl.model.classparser.compact
edu.stanford.smi.protegex.owl.model.classparser.dl - package edu.stanford.smi.protegex.owl.model.classparser.dl
edu.stanford.smi.protegex.owl.model.classparser.manchester - package edu.stanford.smi.protegex.owl.model.classparser.manchester
edu.stanford.smi.protegex.owl.model.event - package edu.stanford.smi.protegex.owl.model.event
edu.stanford.smi.protegex.owl.model.factory - package edu.stanford.smi.protegex.owl.model.factory
edu.stanford.smi.protegex.owl.model.factory.tests - package edu.stanford.smi.protegex.owl.model.factory.tests
edu.stanford.smi.protegex.owl.model.factory.tests.impl - package edu.stanford.smi.protegex.owl.model.factory.tests.impl
edu.stanford.smi.protegex.owl.model.framestore - package edu.stanford.smi.protegex.owl.model.framestore
edu.stanford.smi.protegex.owl.model.framestore.updater - package edu.stanford.smi.protegex.owl.model.framestore.updater
edu.stanford.smi.protegex.owl.model.impl - package edu.stanford.smi.protegex.owl.model.impl
edu.stanford.smi.protegex.owl.model.project - package edu.stanford.smi.protegex.owl.model.project
edu.stanford.smi.protegex.owl.model.query - package edu.stanford.smi.protegex.owl.model.query
edu.stanford.smi.protegex.owl.model.triplestore - package edu.stanford.smi.protegex.owl.model.triplestore
edu.stanford.smi.protegex.owl.model.triplestore.impl - package edu.stanford.smi.protegex.owl.model.triplestore.impl
edu.stanford.smi.protegex.owl.model.util - package edu.stanford.smi.protegex.owl.model.util
edu.stanford.smi.protegex.owl.model.validator - package edu.stanford.smi.protegex.owl.model.validator
edu.stanford.smi.protegex.owl.model.visitor - package edu.stanford.smi.protegex.owl.model.visitor
edu.stanford.smi.protegex.owl.prose - package edu.stanford.smi.protegex.owl.prose
edu.stanford.smi.protegex.owl.repository - package edu.stanford.smi.protegex.owl.repository
edu.stanford.smi.protegex.owl.repository.factory - package edu.stanford.smi.protegex.owl.repository.factory
edu.stanford.smi.protegex.owl.repository.impl - package edu.stanford.smi.protegex.owl.repository.impl
edu.stanford.smi.protegex.owl.repository.util - package edu.stanford.smi.protegex.owl.repository.util
edu.stanford.smi.protegex.owl.resource - package edu.stanford.smi.protegex.owl.resource
edu.stanford.smi.protegex.owl.server - package edu.stanford.smi.protegex.owl.server
edu.stanford.smi.protegex.owl.server.metaproject - package edu.stanford.smi.protegex.owl.server.metaproject
edu.stanford.smi.protegex.owl.server.triplestore - package edu.stanford.smi.protegex.owl.server.triplestore
edu.stanford.smi.protegex.owl.storage - package edu.stanford.smi.protegex.owl.storage
edu.stanford.smi.protegex.owl.swrl - package edu.stanford.smi.protegex.owl.swrl
edu.stanford.smi.protegex.owl.swrl.model - package edu.stanford.smi.protegex.owl.swrl.model
edu.stanford.smi.protegex.owl.swrl.model.examples - package edu.stanford.smi.protegex.owl.swrl.model.examples
edu.stanford.smi.protegex.owl.swrl.model.factory - package edu.stanford.smi.protegex.owl.swrl.model.factory
edu.stanford.smi.protegex.owl.swrl.model.impl - package edu.stanford.smi.protegex.owl.swrl.model.impl
edu.stanford.smi.protegex.owl.swrl.parser - package edu.stanford.smi.protegex.owl.swrl.parser
edu.stanford.smi.protegex.owl.swrl.ui - package edu.stanford.smi.protegex.owl.swrl.ui
edu.stanford.smi.protegex.owl.swrl.ui.actions - package edu.stanford.smi.protegex.owl.swrl.ui.actions
edu.stanford.smi.protegex.owl.swrl.ui.code - package edu.stanford.smi.protegex.owl.swrl.ui.code
edu.stanford.smi.protegex.owl.swrl.ui.icons - package edu.stanford.smi.protegex.owl.swrl.ui.icons
edu.stanford.smi.protegex.owl.swrl.ui.tab - package edu.stanford.smi.protegex.owl.swrl.ui.tab
edu.stanford.smi.protegex.owl.swrl.ui.table - package edu.stanford.smi.protegex.owl.swrl.ui.table
edu.stanford.smi.protegex.owl.swrl.ui.widget - package edu.stanford.smi.protegex.owl.swrl.ui.widget
edu.stanford.smi.protegex.owl.swrl.util - package edu.stanford.smi.protegex.owl.swrl.util
edu.stanford.smi.protegex.owl.testing - package edu.stanford.smi.protegex.owl.testing
edu.stanford.smi.protegex.owl.testing.constraints - package edu.stanford.smi.protegex.owl.testing.constraints
edu.stanford.smi.protegex.owl.testing.owldl - package edu.stanford.smi.protegex.owl.testing.owldl
edu.stanford.smi.protegex.owl.testing.sanity - package edu.stanford.smi.protegex.owl.testing.sanity
edu.stanford.smi.protegex.owl.testing.style - package edu.stanford.smi.protegex.owl.testing.style
edu.stanford.smi.protegex.owl.testing.todo - package edu.stanford.smi.protegex.owl.testing.todo
edu.stanford.smi.protegex.owl.ui - package edu.stanford.smi.protegex.owl.ui
edu.stanford.smi.protegex.owl.ui.actions - package edu.stanford.smi.protegex.owl.ui.actions
edu.stanford.smi.protegex.owl.ui.actions.triple - package edu.stanford.smi.protegex.owl.ui.actions.triple
edu.stanford.smi.protegex.owl.ui.classform.component - package edu.stanford.smi.protegex.owl.ui.classform.component
edu.stanford.smi.protegex.owl.ui.classform.component.property - package edu.stanford.smi.protegex.owl.ui.classform.component.property
edu.stanford.smi.protegex.owl.ui.classform.form - package edu.stanford.smi.protegex.owl.ui.classform.form
edu.stanford.smi.protegex.owl.ui.classform.form.drag - package edu.stanford.smi.protegex.owl.ui.classform.form.drag
edu.stanford.smi.protegex.owl.ui.classform.form.layout - package edu.stanford.smi.protegex.owl.ui.classform.form.layout
edu.stanford.smi.protegex.owl.ui.cls - package edu.stanford.smi.protegex.owl.ui.cls
edu.stanford.smi.protegex.owl.ui.clsdesc - package edu.stanford.smi.protegex.owl.ui.clsdesc
edu.stanford.smi.protegex.owl.ui.clsdesc.manchester - package edu.stanford.smi.protegex.owl.ui.clsdesc.manchester
edu.stanford.smi.protegex.owl.ui.clsproperties - package edu.stanford.smi.protegex.owl.ui.clsproperties
edu.stanford.smi.protegex.owl.ui.code - package edu.stanford.smi.protegex.owl.ui.code
edu.stanford.smi.protegex.owl.ui.components - package edu.stanford.smi.protegex.owl.ui.components
edu.stanford.smi.protegex.owl.ui.components.annotations - package edu.stanford.smi.protegex.owl.ui.components.annotations
edu.stanford.smi.protegex.owl.ui.components.datarangefield - package edu.stanford.smi.protegex.owl.ui.components.datarangefield
edu.stanford.smi.protegex.owl.ui.components.literaltable - package edu.stanford.smi.protegex.owl.ui.components.literaltable
edu.stanford.smi.protegex.owl.ui.components.multiresource - package edu.stanford.smi.protegex.owl.ui.components.multiresource
edu.stanford.smi.protegex.owl.ui.components.rdflist - package edu.stanford.smi.protegex.owl.ui.components.rdflist
edu.stanford.smi.protegex.owl.ui.components.singleliteral - package edu.stanford.smi.protegex.owl.ui.components.singleliteral
edu.stanford.smi.protegex.owl.ui.components.singleresource - package edu.stanford.smi.protegex.owl.ui.components.singleresource
edu.stanford.smi.protegex.owl.ui.components.superclasses - package edu.stanford.smi.protegex.owl.ui.components.superclasses
edu.stanford.smi.protegex.owl.ui.components.triples - package edu.stanford.smi.protegex.owl.ui.components.triples
edu.stanford.smi.protegex.owl.ui.conditions - package edu.stanford.smi.protegex.owl.ui.conditions
edu.stanford.smi.protegex.owl.ui.dialogs - package edu.stanford.smi.protegex.owl.ui.dialogs
edu.stanford.smi.protegex.owl.ui.editors - package edu.stanford.smi.protegex.owl.ui.editors
edu.stanford.smi.protegex.owl.ui.existential - package edu.stanford.smi.protegex.owl.ui.existential
edu.stanford.smi.protegex.owl.ui.explorer - package edu.stanford.smi.protegex.owl.ui.explorer
edu.stanford.smi.protegex.owl.ui.explorer.filter - package edu.stanford.smi.protegex.owl.ui.explorer.filter
edu.stanford.smi.protegex.owl.ui.forms - package edu.stanford.smi.protegex.owl.ui.forms
edu.stanford.smi.protegex.owl.ui.icons - package edu.stanford.smi.protegex.owl.ui.icons
edu.stanford.smi.protegex.owl.ui.importstree - package edu.stanford.smi.protegex.owl.ui.importstree
edu.stanford.smi.protegex.owl.ui.importstree.server - package edu.stanford.smi.protegex.owl.ui.importstree.server
edu.stanford.smi.protegex.owl.ui.individuals - package edu.stanford.smi.protegex.owl.ui.individuals
edu.stanford.smi.protegex.owl.ui.jena - package edu.stanford.smi.protegex.owl.ui.jena
edu.stanford.smi.protegex.owl.ui.matrix - package edu.stanford.smi.protegex.owl.ui.matrix
edu.stanford.smi.protegex.owl.ui.matrix.cls - package edu.stanford.smi.protegex.owl.ui.matrix.cls
edu.stanford.smi.protegex.owl.ui.matrix.property - package edu.stanford.smi.protegex.owl.ui.matrix.property
edu.stanford.smi.protegex.owl.ui.menu - package edu.stanford.smi.protegex.owl.ui.menu
edu.stanford.smi.protegex.owl.ui.menu.code - package edu.stanford.smi.protegex.owl.ui.menu.code
edu.stanford.smi.protegex.owl.ui.menu.preferences - package edu.stanford.smi.protegex.owl.ui.menu.preferences
edu.stanford.smi.protegex.owl.ui.metadata - package edu.stanford.smi.protegex.owl.ui.metadata
edu.stanford.smi.protegex.owl.ui.metadatatab - package edu.stanford.smi.protegex.owl.ui.metadatatab
edu.stanford.smi.protegex.owl.ui.metadatatab.alldifferent - package edu.stanford.smi.protegex.owl.ui.metadatatab.alldifferent
edu.stanford.smi.protegex.owl.ui.metadatatab.imports - package edu.stanford.smi.protegex.owl.ui.metadatatab.imports
edu.stanford.smi.protegex.owl.ui.metadatatab.imports.emptyimport - package edu.stanford.smi.protegex.owl.ui.metadatatab.imports.emptyimport
edu.stanford.smi.protegex.owl.ui.metadatatab.imports.wizard - package edu.stanford.smi.protegex.owl.ui.metadatatab.imports.wizard
edu.stanford.smi.protegex.owl.ui.metadatatab.prefixes - package edu.stanford.smi.protegex.owl.ui.metadatatab.prefixes
edu.stanford.smi.protegex.owl.ui.metrics - package edu.stanford.smi.protegex.owl.ui.metrics
edu.stanford.smi.protegex.owl.ui.metrics.lang - package edu.stanford.smi.protegex.owl.ui.metrics.lang
edu.stanford.smi.protegex.owl.ui.navigation - package edu.stanford.smi.protegex.owl.ui.navigation
edu.stanford.smi.protegex.owl.ui.owltable - package edu.stanford.smi.protegex.owl.ui.owltable
edu.stanford.smi.protegex.owl.ui.profiles - package edu.stanford.smi.protegex.owl.ui.profiles
edu.stanford.smi.protegex.owl.ui.projectview - package edu.stanford.smi.protegex.owl.ui.projectview
edu.stanford.smi.protegex.owl.ui.properties - package edu.stanford.smi.protegex.owl.ui.properties
edu.stanford.smi.protegex.owl.ui.properties.actions - package edu.stanford.smi.protegex.owl.ui.properties.actions
edu.stanford.smi.protegex.owl.ui.properties.domain - package edu.stanford.smi.protegex.owl.ui.properties.domain
edu.stanford.smi.protegex.owl.ui.properties.range - package edu.stanford.smi.protegex.owl.ui.properties.range
edu.stanford.smi.protegex.owl.ui.properties.types - package edu.stanford.smi.protegex.owl.ui.properties.types
edu.stanford.smi.protegex.owl.ui.query - package edu.stanford.smi.protegex.owl.ui.query
edu.stanford.smi.protegex.owl.ui.refactoring - package edu.stanford.smi.protegex.owl.ui.refactoring
edu.stanford.smi.protegex.owl.ui.repository - package edu.stanford.smi.protegex.owl.ui.repository
edu.stanford.smi.protegex.owl.ui.repository.action - package edu.stanford.smi.protegex.owl.ui.repository.action
edu.stanford.smi.protegex.owl.ui.repository.wizard - package edu.stanford.smi.protegex.owl.ui.repository.wizard
edu.stanford.smi.protegex.owl.ui.repository.wizard.impl - package edu.stanford.smi.protegex.owl.ui.repository.wizard.impl
edu.stanford.smi.protegex.owl.ui.resourcedisplay - package edu.stanford.smi.protegex.owl.ui.resourcedisplay
edu.stanford.smi.protegex.owl.ui.resourceselection - package edu.stanford.smi.protegex.owl.ui.resourceselection
edu.stanford.smi.protegex.owl.ui.restrictions - package edu.stanford.smi.protegex.owl.ui.restrictions
edu.stanford.smi.protegex.owl.ui.results - package edu.stanford.smi.protegex.owl.ui.results
edu.stanford.smi.protegex.owl.ui.search - package edu.stanford.smi.protegex.owl.ui.search
edu.stanford.smi.protegex.owl.ui.search.finder - package edu.stanford.smi.protegex.owl.ui.search.finder
edu.stanford.smi.protegex.owl.ui.subsumption - package edu.stanford.smi.protegex.owl.ui.subsumption
edu.stanford.smi.protegex.owl.ui.testing - package edu.stanford.smi.protegex.owl.ui.testing
edu.stanford.smi.protegex.owl.ui.tooltips - package edu.stanford.smi.protegex.owl.ui.tooltips
edu.stanford.smi.protegex.owl.ui.triplestore - package edu.stanford.smi.protegex.owl.ui.triplestore
edu.stanford.smi.protegex.owl.ui.widget - package edu.stanford.smi.protegex.owl.ui.widget
edu.stanford.smi.protegex.owl.ui.wizard - package edu.stanford.smi.protegex.owl.ui.wizard
edu.stanford.smi.protegex.owl.util - package edu.stanford.smi.protegex.owl.util
edu.stanford.smi.protegex.owl.util.job - package edu.stanford.smi.protegex.owl.util.job
edu.stanford.smi.protegex.owl.writer.rdfxml.rdfwriter - package edu.stanford.smi.protegex.owl.writer.rdfxml.rdfwriter
edu.stanford.smi.protegex.owl.writer.rdfxml.renderer - package edu.stanford.smi.protegex.owl.writer.rdfxml.renderer
edu.stanford.smi.protegex.owl.writer.rdfxml.util - package edu.stanford.smi.protegex.owl.writer.rdfxml.util
edu.stanford.smi.protegex.owl.writer.xml - package edu.stanford.smi.protegex.owl.writer.xml
edu.stanford.smi.protegex.owlx.examples - package edu.stanford.smi.protegex.owlx.examples
edu.stanford.smi.protegex.owlx.examples.javaDemo - package edu.stanford.smi.protegex.owlx.examples.javaDemo
edu.stanford.smi.protegex.owlx.examples.javaDemo.model - package edu.stanford.smi.protegex.owlx.examples.javaDemo.model
edu.stanford.smi.protegex.owlx.examples.javaDemo.model.impl - package edu.stanford.smi.protegex.owlx.examples.javaDemo.model.impl
Element - Static variable in class edu.stanford.smi.protegex.owl.swrl.model.SQWRLNames
EMFAction - Class in edu.stanford.smi.protegex.owl.ui.menu.code
EMFAction() - Constructor for class edu.stanford.smi.protegex.owl.ui.menu.code.EMFAction
EMFGenerator - Class in edu.stanford.smi.protegex.owl.emf
  A class that can create Jave interfaces in the EMF format from an OWL model.
EMFGenerator(OWLModel, EMFGeneratorOptions) - Constructor for class edu.stanford.smi.protegex.owl.emf.EMFGenerator
EMFGeneratorOptions - Interface in edu.stanford.smi.protegex.owl.emf
EMFPanel - Class in edu.stanford.smi.protegex.owl.ui.menu.code
EMFPanel(EditableEMFGeneratorOptions) - Constructor for class edu.stanford.smi.protegex.owl.ui.menu.code.EMFPanel
EMPTY - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLConstants.BuiltIns
  Deprecated.
EMPTY_PROPERTY_URI - Static variable in class edu.stanford.smi.protegex.owl.testing.constraints.SPARQLAssertTest
EMPTY_RULE_TEXT - Static variable in class edu.stanford.smi.protegex.owl.swrl.model.impl.DefaultSWRLImp
EmptyImportExplanationPage - Class in edu.stanford.smi.protegex.owl.ui.metadatatab.imports.emptyimport
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Oct 5, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
EmptyImportExplanationPage(OWLWizard, OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.ui.metadatatab.imports.emptyimport.EmptyImportExplanationPage
EmptyImportWizard - Class in edu.stanford.smi.protegex.owl.ui.metadatatab.imports.emptyimport
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Oct 5, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
EmptyImportWizard(JComponent, OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.ui.metadatatab.imports.emptyimport.EmptyImportWizard
EmptyOntologyURIPage - Class in edu.stanford.smi.protegex.owl.ui.metadatatab.imports.emptyimport
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Oct 5, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
EmptyOntologyURIPage(OWLWizard, OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.ui.metadatatab.imports.emptyimport.EmptyOntologyURIPage
enable() - Method in class edu.stanford.smi.protegex.owl.swrl.model.impl.DefaultSWRLImp
enable(String) - Method in class edu.stanford.smi.protegex.owl.swrl.model.impl.DefaultSWRLImp
enable(Set<String>) - Method in class edu.stanford.smi.protegex.owl.swrl.model.impl.DefaultSWRLImp
enable() - Method in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLImp
enable(String) - Method in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLImp
enable(Set<String>) - Method in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLImp
enable_tracing() - Method in class edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxParser
enable_tracing() - Method in class edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParser
enableActions(Slot, Cls) - Method in class edu.stanford.smi.protegex.owl.ui.code.OWLSymbolPanel
enableActions(boolean, boolean) - Method in class edu.stanford.smi.protegex.owl.ui.code.OWLSymbolPanel
enableActions(boolean, boolean, boolean, boolean) - Method in class edu.stanford.smi.protegex.owl.ui.code.OWLSymbolPanel
enableActions(boolean, boolean) - Method in class edu.stanford.smi.protegex.owl.ui.code.SymbolPanel
enableActions(Collection) - Method in class edu.stanford.smi.protegex.owl.ui.owltable.OWLTable
enableActions() - Method in class edu.stanford.smi.protegex.owl.ui.owltable.SymbolTable
enableActions(Collection) - Method in class edu.stanford.smi.protegex.owl.ui.owltable.SymbolTable
enableAll() - Method in class edu.stanford.smi.protegex.owl.swrl.model.SWRLFactory
enableAll(Set<String>) - Method in class edu.stanford.smi.protegex.owl.swrl.model.SWRLFactory
enableAll(String) - Method in class edu.stanford.smi.protegex.owl.swrl.model.SWRLFactory
enableAll() - Method in class edu.stanford.smi.protegex.owl.swrl.ui.table.SWRLTableModel
enableComponentListeners() - Method in class edu.stanford.smi.protegex.owl.ui.components.singleliteral.AbstractSingleLiteralComponent
enabledCompListeners() - Method in class edu.stanford.smi.protegex.owl.ui.components.datarangefield.DataRangeFieldComponent
enabledCompListeners() - Method in class edu.stanford.smi.protegex.owl.ui.widget.OWLDateWidget
EnableSWRLTabAction - Class in edu.stanford.smi.protegex.owl.swrl.ui.actions
EnableSWRLTabAction() - Constructor for class edu.stanford.smi.protegex.owl.swrl.ui.actions.EnableSWRLTabAction
encodeNamespaceIntoModel(OWLModel, TripleStore) - Static method in class edu.stanford.smi.protegex.owl.model.factory.FactoryUtils
end(Task) - Method in class edu.stanford.smi.protegex.owl.model.impl.NoopProgressDisplay
end() - Method in interface edu.stanford.smi.protegex.owl.model.ProgressManager
  Notifies the manager that the recently started process has ended.
end(Task) - Method in interface edu.stanford.smi.protegex.owl.model.TaskProgressDisplay
  Stops (hides) the progress display.
end(Task) - Method in class edu.stanford.smi.protegex.owl.ui.ProgressDisplayDialog
endColumn - Variable in class edu.stanford.smi.protegex.owl.model.classparser.compact.Token
  beginLine and beginColumn describe the position of the first character of this token; endLine and endColumn describe the position of the last character of this token.
endColumn - Variable in class edu.stanford.smi.protegex.owl.model.classparser.dl.Token
  beginLine and beginColumn describe the position of the first character of this token; endLine and endColumn describe the position of the last character of this token.
endColumn - Variable in class edu.stanford.smi.protegex.owl.model.classparser.manchester.Token
  beginLine and beginColumn describe the position of the first character of this token; endLine and endColumn describe the position of the last character of this token.
endDocument() - Method in class edu.stanford.smi.protegex.owl.writer.xml.DefaultXMLWriter
endDocument() - Method in interface edu.stanford.smi.protegex.owl.writer.xml.XMLWriter
  Causes all open elements, including the document root element, to be closed.
endLine - Variable in class edu.stanford.smi.protegex.owl.model.classparser.compact.Token
  beginLine and beginColumn describe the position of the first character of this token; endLine and endColumn describe the position of the last character of this token.
endLine - Variable in class edu.stanford.smi.protegex.owl.model.classparser.dl.Token
  beginLine and beginColumn describe the position of the first character of this token; endLine and endColumn describe the position of the last character of this token.
endLine - Variable in class edu.stanford.smi.protegex.owl.model.classparser.manchester.Token
  beginLine and beginColumn describe the position of the first character of this token; endLine and endColumn describe the position of the last character of this token.
ENDS_WITH - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLConstants.BuiltIns
  Deprecated.
ENDS_WITH - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.CoreBuiltIns
ENDS_WITH - Static variable in interface edu.stanford.smi.protegex.owl.ui.search.finder.Find
endTransaction() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
ensureActiveTripleStore(RDFResource) - Static method in class edu.stanford.smi.protegex.owl.model.triplestore.impl.TripleStoreModelImpl
ensureActiveTripleStore(RDFResource) - Static method in class edu.stanford.smi.protegex.owl.model.triplestore.TripleStoreUtil
ensureClassSelected(RDFSNamedClass, int) - Method in class edu.stanford.smi.protegex.owl.ui.cls.OWLClassesTab
ensureClsSelected(Cls, int) - Method in class edu.stanford.smi.protegex.owl.ui.cls.OWLClassesTab
  Deprecated.
ensureDIGReasonerHasRightURL(ProtegeOWLReasoner) - Method in class edu.stanford.smi.protegex.owl.inference.ui.ReasonerActionRunner
ensureEditedClassSelectedInExplorer(OWLClassesTab) - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTable
ensureNoSurvivingClsesAreDeleted(Cls, Slot, Collection, Cls) - Method in class edu.stanford.smi.protegex.owl.model.framestore.updater.QuantifierRestrictionUpdater
ensureOWLFullModelIsLastModel(OntModel, Model) - Static method in class edu.stanford.smi.protegex.owl.jena.Jena
ensureResourcesHaveVisibility(Collection, boolean) - Static method in class edu.stanford.smi.protegex.owl.ui.dialogs.DefaultSelectionDialogFactory
  Makes sure that the resources in the specified collection have the specified visibility.
ensureSubclassesDisjoint(OWLNamedClass) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
ENUMERATED_CLASS - Static variable in interface edu.stanford.smi.protegex.owl.model.OWLNames.Cls
Enumerated_Classes - Static variable in class edu.stanford.smi.protegex.owl.ui.profiles.OWLProfiles
EnumeratedClassExample - Class in edu.stanford.smi.protegex.owlx.examples
EnumeratedClassExample() - Constructor for class edu.stanford.smi.protegex.owlx.examples.EnumeratedClassExample
EOF - Static variable in interface edu.stanford.smi.protegex.owl.model.classparser.compact.CompactParserConstants
EOF - Static variable in interface edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxParserConstants
EOF - Static variable in interface edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParserConstants
eol - Variable in exception edu.stanford.smi.protegex.owl.model.classparser.compact.ParseException
  The end of line string for this machine.
eol - Variable in exception edu.stanford.smi.protegex.owl.model.classparser.dl.ParseException
  The end of line string for this machine.
eol - Variable in exception edu.stanford.smi.protegex.owl.model.classparser.manchester.ParseException
  The end of line string for this machine.
Equal - Static variable in class edu.stanford.smi.protegex.owl.swrl.model.SQWRLNames
EQUAL - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLConstants.BuiltIns
  Deprecated.
EQUAL - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.CoreBuiltIns
EQUAL_C - Static variable in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGVocabulary.Tell
EQUAL_IGNORE_CASE - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLConstants.BuiltIns
  Deprecated.
EQUAL_R - Static variable in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGVocabulary.Tell
equals(Object) - Method in class edu.stanford.smi.protegex.owl.jena.parser.UndefTriple
equals(Object) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFSLiteral
equals(Object) - Method in class edu.stanford.smi.protegex.owl.model.triplestore.impl.DefaultTriple
equals(Object) - Method in class edu.stanford.smi.protegex.owl.model.triplestore.impl.DefaultTuple
equals(Object) - Method in class edu.stanford.smi.protegex.owl.model.triplestore.impl.TripleStoreImpl
equals(Object) - Method in class edu.stanford.smi.protegex.owl.repository.impl.DublinCoreDLVersionRedirectRepository
equalsStructurally(RDFObject) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLCardinalityBase
equalsStructurally(RDFObject) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLNAryLogicalClass
equalsStructurally(RDFObject) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLQuantifierRestriction
equalsStructurally(RDFObject) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLAllDifferent
equalsStructurally(RDFObject) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLComplementClass
equalsStructurally(RDFObject) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLDataRange
equalsStructurally(RDFObject) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLEnumeratedClass
equalsStructurally(RDFObject) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLHasValue
equalsStructurally(RDFObject) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLIndividual
equalsStructurally(RDFSClass) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLNamedClass
equalsStructurally(RDFObject) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLOntology
equalsStructurally(RDFObject) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFIndividual
equalsStructurally(RDFObject) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFList
equalsStructurally(RDFObject) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
equalsStructurally(RDFObject) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFSDatatype
equalsStructurally(RDFObject) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFSLiteral
equalsStructurally(RDFObject) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFSNamedClass
equalsStructurally(Collection, Collection) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
equalsStructurally(RDFObject) - Method in interface edu.stanford.smi.protegex.owl.model.RDFObject
  Determines whether or not the specified class is structurally equal to this class.
EQUIVALENT - Static variable in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGVocabulary.Ask
EQUIVALENT_CLASS - Static variable in interface edu.stanford.smi.protegex.owl.model.OWLNames.Slot
EQUIVALENT_CLASS - Static variable in class edu.stanford.smi.protegex.owl.ui.search.FindUsageTableItem
EQUIVALENT_PROPERTIES - Static variable in interface edu.stanford.smi.protegex.owl.model.OWLNames.Slot
  Deprecated. use EQUIVALENT_PROPERTY instead
EQUIVALENT_PROPERTY - Static variable in interface edu.stanford.smi.protegex.owl.model.OWLNames.Slot
ERROR - Static variable in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGVocabulary.Response
ERROR - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
errorLogged(DIGError) - Method in interface edu.stanford.smi.protegex.owl.inference.dig.reasoner.logger.DIGLoggerListener
errorMessage - Static variable in class edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParser
ErrorMessageLogRecord - Class in edu.stanford.smi.protegex.owl.inference.protegeowl.log
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Sep 13, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
ErrorMessageLogRecord(RDFResource, String, ReasonerLogRecord) - Constructor for class edu.stanford.smi.protegex.owl.inference.protegeowl.log.ErrorMessageLogRecord
EXACT - Static variable in interface edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParserConstants
EXACTLY_MATCHES - Static variable in interface edu.stanford.smi.protegex.owl.ui.search.finder.Find
EXCLUDE_STANDARD_IMPORTS - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames
EXCLUDED_TEST - Static variable in class edu.stanford.smi.protegex.owl.model.ProtegeNames
execute() - Method in class edu.stanford.smi.protegex.owl.inference.ui.ReasonerActionRunner
  Executes the reasoner actions that are specified in the RunnableReasonerAction's `executeReasonerActions` method.
execute() - Method in class edu.stanford.smi.protegex.owl.ui.importstree.server.CheckSetActiveImportAllowedJob
execute() - Method in class edu.stanford.smi.protegex.owl.ui.importstree.server.SetActiveOntologyJob
execute() - Method in class edu.stanford.smi.protegex.owl.util.job.GetIsIncludedJob
execute() - Method in class edu.stanford.smi.protegex.owl.util.job.GetTripleStoreOfTripleJob
executeQuery(Query, QueryCallback) - Method in class edu.stanford.smi.protegex.owl.model.framestore.OWLFrameFactoryInvocationHandler
  Deprecated.
executeQuery(Query, QueryCallback) - Method in class edu.stanford.smi.protegex.owl.ui.importstree.server.ActiveOntologyFrameStoreHandler
executeQuery(String) - Method in class edu.stanford.smi.protegex.owl.ui.query.SPARQLResultsPanel
executeReasonerActions(ReasonerTaskListener) - Method in class edu.stanford.smi.protegex.owl.inference.ui.action.CheckSingleConceptConsistencyAction
executeReasonerActions(ReasonerTaskListener) - Method in class edu.stanford.smi.protegex.owl.inference.ui.action.ClassifyTaxonomyAction
executeReasonerActions(ReasonerTaskListener) - Method in class edu.stanford.smi.protegex.owl.inference.ui.action.ComputeIndividualsBelongingToClassAction
executeReasonerActions(ReasonerTaskListener) - Method in class edu.stanford.smi.protegex.owl.inference.ui.action.ComputeSingleIndividualTypesAction
executeReasonerActions(ReasonerTaskListener) - Method in class edu.stanford.smi.protegex.owl.inference.ui.action.GetSingleIndividualPropertyValuesAction
executeReasonerActions(ReasonerTaskListener) - Method in interface edu.stanford.smi.protegex.owl.inference.ui.RunnableReasonerAction
  Will be called by the runner to execute some reasoner actions.
executeSPARQLQuery(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
executeSPARQLQuery(String) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Executes a SPARQL query on this OWLModel.
ExInclusiveToggleAction - Class in edu.stanford.smi.protegex.owl.ui.properties.range
ExInclusiveToggleAction(String, String, String, ExInclusiveToggleAction.Callback) - Constructor for class edu.stanford.smi.protegex.owl.ui.properties.range.ExInclusiveToggleAction
ExInclusiveToggleAction.Callback - Interface in edu.stanford.smi.protegex.owl.ui.properties.range
Existential - Class in edu.stanford.smi.protegex.owl.ui.existential
  Deprecated. This class should not be used - it has been replaced with ExistentialFillerProvider
Existential() - Constructor for class edu.stanford.smi.protegex.owl.ui.existential.Existential
  Deprecated.
ExistentialAction - Class in edu.stanford.smi.protegex.owl.ui.existential
ExistentialAction(Component, HierarchyManager, OWLNamedClass) - Constructor for class edu.stanford.smi.protegex.owl.ui.existential.ExistentialAction
ExistentialFillerProvider - Class in edu.stanford.smi.protegex.owl.ui.existential
  Author: Matthew Horridge
  The University Of Manchester
  Medical Informatics Group
  Date: Feb 5, 2006

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
ExistentialFillerProvider(OWLObjectProperty) - Constructor for class edu.stanford.smi.protegex.owl.ui.existential.ExistentialFillerProvider
ExistentialMatrixAction - Class in edu.stanford.smi.protegex.owl.ui.matrix.cls
ExistentialMatrixAction() - Constructor for class edu.stanford.smi.protegex.owl.ui.matrix.cls.ExistentialMatrixAction
ExistentialMatrixColumn - Class in edu.stanford.smi.protegex.owl.ui.matrix.cls
ExistentialMatrixColumn(RDFProperty) - Constructor for class edu.stanford.smi.protegex.owl.ui.matrix.cls.ExistentialMatrixColumn
ExistentialTreeModel - Class in edu.stanford.smi.protegex.owl.ui.existential
  Author: Matthew Horridge
  The University Of Manchester
  Medical Informatics Group
  Date: Feb 5, 2006

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
ExistentialTreeModel(OWLClass, OWLObjectProperty) - Constructor for class edu.stanford.smi.protegex.owl.ui.existential.ExistentialTreeModel
ExistentialTreeNode - Class in edu.stanford.smi.protegex.owl.ui.existential
  A LazyTreeNode for a relationship between classes via someValuesFrom restrictions on a (transitive) property.
ExistentialTreeNode(LazyTreeNode, OWLClass, Slot, OWLObjectProperty) - Constructor for class edu.stanford.smi.protegex.owl.ui.existential.ExistentialTreeNode
ExistentialTreePanel - Class in edu.stanford.smi.protegex.owl.ui.existential
  A component that displays an existential relationship between classes.
ExistentialTreePanel(Cls, Slot, OWLObjectProperty) - Constructor for class edu.stanford.smi.protegex.owl.ui.existential.ExistentialTreePanel
ExistentialTreePanel.SuperClsesPanel - Interface in edu.stanford.smi.protegex.owl.ui.existential
ExistentialTreeRoot - Class in edu.stanford.smi.protegex.owl.ui.existential
  A LazyTreeRoot for the root of a transitivity tree.
ExistentialTreeRoot(Cls, Slot, OWLObjectProperty) - Constructor for class edu.stanford.smi.protegex.owl.ui.existential.ExistentialTreeRoot
ExpandBuff(boolean) - Method in class edu.stanford.smi.protegex.owl.model.classparser.compact.JavaCharStream
ExpandBuff(boolean) - Method in class edu.stanford.smi.protegex.owl.model.classparser.dl.JavaCharStream
ExpandBuff(boolean) - Method in class edu.stanford.smi.protegex.owl.model.classparser.manchester.JavaCharStream
expandPrefix(String) - Method in class edu.stanford.smi.protegex.owl.jena.graph.ProtegePrefixMapping
expandRoot() - Method in class edu.stanford.smi.protegex.owl.ui.existential.ExistentialTreePanel
expandRoot() - Method in class edu.stanford.smi.protegex.owl.ui.subsumption.SubsumptionTreePanel
expandRootsOfInferredTrees() - Method in class edu.stanford.smi.protegex.owl.ui.cls.HierarchiesPanel
expandToFillSpace() - Method in class edu.stanford.smi.protegex.owl.ui.explorer.ExplorerTreePanel
expandTree() - Method in class edu.stanford.smi.protegex.owl.ui.metrics.MetricsPanel
ExpandTreeAction - Class in edu.stanford.smi.protegex.owl.ui.actions
ExpandTreeAction() - Constructor for class edu.stanford.smi.protegex.owl.ui.actions.ExpandTreeAction
ExpansionKeyListener - Class in edu.stanford.smi.protegex.owl.ui.code
  A key listener that can be used for auto-completion.
ExpansionKeyListener(JTextComponent, OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.ui.code.ExpansionKeyListener
expectedTokenSequences - Variable in exception edu.stanford.smi.protegex.owl.model.classparser.compact.ParseException
  Each entry in this array is an array of integers.
expectedTokenSequences - Variable in exception edu.stanford.smi.protegex.owl.model.classparser.dl.ParseException
  Each entry in this array is an array of integers.
expectedTokenSequences - Variable in exception edu.stanford.smi.protegex.owl.model.classparser.manchester.ParseException
  Each entry in this array is an array of integers.
EXPLANATION_COLUMN - Static variable in class edu.stanford.smi.protegex.owl.ui.metrics.lang.DLExpressivityTableModel
ExplorerAction - Class in edu.stanford.smi.protegex.owl.ui.explorer
ExplorerAction() - Constructor for class edu.stanford.smi.protegex.owl.ui.explorer.ExplorerAction
ExplorerFilter - Interface in edu.stanford.smi.protegex.owl.ui.explorer
  An interface for objects that define the policy by which child nodes are added to an ExplorerNode.
ExplorerFilterPanel - Class in edu.stanford.smi.protegex.owl.ui.explorer.filter
ExplorerFilterPanel(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.ui.explorer.filter.ExplorerFilterPanel
ExplorerFilterPanel(OWLModel, DefaultExplorerFilter) - Constructor for class edu.stanford.smi.protegex.owl.ui.explorer.filter.ExplorerFilterPanel
ExplorerRenderer - Class in edu.stanford.smi.protegex.owl.ui.explorer
ExplorerRenderer() - Constructor for class edu.stanford.smi.protegex.owl.ui.explorer.ExplorerRenderer
ExplorerTreeNode - Class in edu.stanford.smi.protegex.owl.ui.explorer
ExplorerTreeNode(LazyTreeNode, RDFSClass, ExplorerFilter) - Constructor for class edu.stanford.smi.protegex.owl.ui.explorer.ExplorerTreeNode
ExplorerTreeNodeFactory - Class in edu.stanford.smi.protegex.owl.ui.explorer
ExplorerTreeNodeFactory() - Constructor for class edu.stanford.smi.protegex.owl.ui.explorer.ExplorerTreeNodeFactory
ExplorerTreePanel - Class in edu.stanford.smi.protegex.owl.ui.explorer
  A component that displays a generic explorer tree for classes.
ExplorerTreePanel(RDFSClass, ExplorerFilter, String, boolean) - Constructor for class edu.stanford.smi.protegex.owl.ui.explorer.ExplorerTreePanel
ExplorerTreeRoot - Class in edu.stanford.smi.protegex.owl.ui.explorer
  A LazyTreeRoot for the explorer tree.
ExplorerTreeRoot(RDFSClass, ExplorerFilter) - Constructor for class edu.stanford.smi.protegex.owl.ui.explorer.ExplorerTreeRoot
EXPONENT - Static variable in interface edu.stanford.smi.protegex.owl.model.classparser.compact.CompactParserConstants
EXPONENT - Static variable in interface edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxParserConstants
EXPONENT - Static variable in interface edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParserConstants
exportAsDrag(JComponent, InputEvent, int) - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTableTransferHandler
exportDone(JComponent, Transferable, int) - Method in class edu.stanford.smi.protegex.owl.ui.owltable.OWLTableTransferHandler
exportOWLClses(JComponent) - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTableTransferHandler
exportOWLClses(JComponent) - Method in class edu.stanford.smi.protegex.owl.ui.owltable.OWLTableTransferHandler
exportToClipboard(JComponent, Clipboard, int) - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTableTransferHandler
ExpressionInfo<E extends OWLAnonymousClass> - Class in edu.stanford.smi.protegex.owl.util
  This class represents information that should be collected about parts of expressions when they are parsed from the Protege Frames knowledge base.
ExpressionInfo(E, OWLAnonymousClass, OWLNamedClass) - Constructor for class edu.stanford.smi.protegex.owl.util.ExpressionInfo
ExpressionInfoUtils - Class in edu.stanford.smi.protegex.owl.util
ExpressionInfoUtils() - Constructor for class edu.stanford.smi.protegex.owl.util.ExpressionInfoUtils
ExpressivityIcons - Class in edu.stanford.smi.protegex.owl.ui.metrics.lang
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Oct 22, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
ExpressivityIcons() - Constructor for class edu.stanford.smi.protegex.owl.ui.metrics.lang.ExpressivityIcons
extendPartialName(String, String) - Method in class edu.stanford.smi.protegex.owl.ui.code.SymbolTextArea
extendSelection(Cls) - Method in class edu.stanford.smi.protegex.owl.ui.cls.OWLSubclassPane
extendSelection(Cls) - Method in class edu.stanford.smi.protegex.owl.ui.existential.ExistentialTreePanel
extendSelection(RDFSClass) - Method in class edu.stanford.smi.protegex.owl.ui.explorer.ExplorerTreePanel
extendSelection(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.ui.properties.OWLSubpropertyPane
extendSelection(Cls) - Method in class edu.stanford.smi.protegex.owl.ui.subsumption.SubsumptionTreePanel
EXTENSION - Static variable in class edu.stanford.smi.protegex.owl.jena.JenaKnowledgeBaseSourcesEditor
EXTENSION - Static variable in class edu.stanford.smi.protegex.owl.ui.jena.AbstractOWLFilesWizardPage
EXTERNAL_CLASS - Static variable in interface edu.stanford.smi.protegex.owl.model.ProtegeNames.Cls
EXTERNAL_CLASS - Static variable in interface edu.stanford.smi.protegex.owl.model.RDFNames.Cls
EXTERNAL_PROPERTY - Static variable in interface edu.stanford.smi.protegex.owl.model.RDFNames.Cls
EXTERNAL_RESOURCE - Static variable in interface edu.stanford.smi.protegex.owl.model.RDFNames.Cls
ExternalResourceURLWidget - Class in edu.stanford.smi.protegex.owl.ui.widget
ExternalResourceURLWidget() - Constructor for class edu.stanford.smi.protegex.owl.ui.widget.ExternalResourceURLWidget
EXTRA_SPACING - Static variable in class edu.stanford.smi.protegex.owl.ui.components.annotations.AnnotationsValueRenderer
ExtractOntologyAction - Class in edu.stanford.smi.protegex.owl.ui.cls
  Currently only working in database mode!
ExtractOntologyAction() - Constructor for class edu.stanford.smi.protegex.owl.ui.cls.ExtractOntologyAction
ExtractTaxonomyAction - Class in edu.stanford.smi.protegex.owl.ui.cls
ExtractTaxonomyAction() - Constructor for class edu.stanford.smi.protegex.owl.ui.cls.ExtractTaxonomyAction

## F

F - Static variable in class edu.stanford.smi.protegex.owl.model.util.DLExpressivityChecker
FacetConstraintsTest - Class in edu.stanford.smi.protegex.owl.testing.sanity
FacetConstraintsTest() - Constructor for class edu.stanford.smi.protegex.owl.testing.sanity.FacetConstraintsTest
facetCreated(KnowledgeBaseEvent) - Method in class edu.stanford.smi.protegex.owl.model.event.ModelAdapter
  Deprecated.
facetCreated(KnowledgeBaseEvent) - Method in interface edu.stanford.smi.protegex.owl.model.event.ProtegeKnowledgeBaseListener
  Deprecated. not needed
facetDeleted(KnowledgeBaseEvent) - Method in class edu.stanford.smi.protegex.owl.model.event.ModelAdapter
  Deprecated.
facetDeleted(KnowledgeBaseEvent) - Method in interface edu.stanford.smi.protegex.owl.model.event.ProtegeKnowledgeBaseListener
  Deprecated. not needed
facetHandlingBlocked - Variable in class edu.stanford.smi.protegex.owl.model.framestore.FacetUpdateFrameStore
  A flag to prevent infinite recursion when a superclass has been added or removed
FacetsPanel - Class in edu.stanford.smi.protegex.owl.ui.properties.range
FacetsPanel(OWLRangeWidget) - Constructor for class edu.stanford.smi.protegex.owl.ui.properties.range.FacetsPanel
FacetUpdateFrameStore - Class in edu.stanford.smi.protegex.owl.model.framestore
FacetUpdateFrameStore(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.model.framestore.FacetUpdateFrameStore
factory - Variable in class edu.stanford.smi.protegex.owl.model.factory.AbstractOwlProjectCreator
FACTORY_CLASS_NAME - Static variable in class edu.stanford.smi.protegex.owl.javacode.ProjectBasedJavaCodeGeneratorOptions
FactoryUtils - Class in edu.stanford.smi.protegex.owl.model.factory
FactoryUtils() - Constructor for class edu.stanford.smi.protegex.owl.model.factory.FactoryUtils
fails(RDFSClass) - Static method in class edu.stanford.smi.protegex.owl.testing.owldl.NoCardiRestrictionOnTransitivePropertiesOWLDLTest
fails(RDFSClass) - Static method in class edu.stanford.smi.protegex.owl.testing.owldl.NoClassesOrPropertiesInEnumerationsOWLDLTest
fails(RDFSClass) - Static method in class edu.stanford.smi.protegex.owl.testing.owldl.NoMetaclassOWLDLTest
fails(RDFProperty) - Static method in class edu.stanford.smi.protegex.owl.testing.owldl.NoPropertiesWithClassAsRangeOWLDLTest
fails(RDFProperty) - Static method in class edu.stanford.smi.protegex.owl.testing.owldl.NoSuperOrSubPropertiesOfAnnotationPropertiesTest
fails(RDFProperty) - Static method in class edu.stanford.smi.protegex.owl.testing.owldl.TransitivePropertiesCannotBeFunctionalOWLDLTest
fails(RDFProperty) - Static method in class edu.stanford.smi.protegex.owl.testing.sanity.InverseOfFunctionalMustBeInverseFunctionalTest
fails(RDFProperty) - Static method in class edu.stanford.smi.protegex.owl.testing.sanity.InverseOfInverseFunctionalMustBeFunctionalTest
fails(RDFProperty) - Static method in class edu.stanford.smi.protegex.owl.testing.sanity.InverseOfSubpropertyMustBeSubpropertyOfInverseOfSuperpropertyTest
fails(RDFProperty) - Static method in class edu.stanford.smi.protegex.owl.testing.sanity.InverseOfSymmetricPropertyMustBeSymmetricPropertyTest
fails(RDFProperty) - Static method in class edu.stanford.smi.protegex.owl.testing.sanity.InverseOfTopLevelPropertyMustBeTopLevelPropertyTest
fails(RDFProperty) - Static method in class edu.stanford.smi.protegex.owl.testing.sanity.InverseOfTransitivePropertyMustBeTransitivePropertyTest
fails(RDFProperty) - Static method in class edu.stanford.smi.protegex.owl.testing.sanity.InversePropertyMustHaveMatchingRangeAndDomainTest
fails(RDFProperty) - Static method in class edu.stanford.smi.protegex.owl.testing.sanity.PropertyDomainEmptyTest
fails(OWLObjectProperty) - Static method in class edu.stanford.smi.protegex.owl.testing.sanity.PropertyDomainRedundancyTest
fails(OWLObjectProperty) - Static method in class edu.stanford.smi.protegex.owl.testing.sanity.PropertyRangeRedundancyTest
fails(OWLObjectProperty) - Static method in class edu.stanford.smi.protegex.owl.testing.sanity.SubpropertyDomainMustNarrowTest
fails(OWLObjectProperty) - Static method in class edu.stanford.smi.protegex.owl.testing.sanity.SubpropertyRangeMustNarrowTest
fails(RDFProperty) - Static method in class edu.stanford.smi.protegex.owl.testing.sanity.SymmetricPropertyMustHaveEqualRangeAndDomainTest
fails(RDFSClass) - Static method in class edu.stanford.smi.protegex.owl.testing.style.SubclassesRestrictionDuplicatesThatOfSuperTest
FALSE - Static variable in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGVocabulary.Response
FEATURE - Static variable in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGVocabulary.Language
FILE - Static variable in class edu.stanford.smi.protegex.owl.jena.parser.ImplicitImports
FILE - Static variable in class edu.stanford.smi.protegex.owl.model.ProtegeNames
  Deprecated. use `ProtegeNames.PROTEGE_OWL_ONTOLOGY`
FILE - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
FILE_NAME - Static variable in class edu.stanford.smi.protegex.owl.emf.ProjectBasedEMFGeneratorOptions
FILE_NAME - Static variable in class edu.stanford.smi.protegex.owl.javacode.ProjectBasedJavaCodeGeneratorOptions
FILE_NAME - Static variable in class edu.stanford.smi.protegex.owl.ui.forms.AbsoluteFormsGenerator
FILE_PREFIX - Static variable in class edu.stanford.smi.protegex.owl.repository.impl.LocalFileRepositoryFactoryPlugin
FileBrowserPanel - Class in edu.stanford.smi.protegex.owl.ui.repository.wizard.impl
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Sep 26, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
FileBrowserPanel(WizardPage, String, boolean, String) - Constructor for class edu.stanford.smi.protegex.owl.ui.repository.wizard.impl.FileBrowserPanel
FileImportEntry - Class in edu.stanford.smi.protegex.owl.ui.metadatatab.imports.wizard
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Dec 7, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
FileImportEntry(File) - Constructor for class edu.stanford.smi.protegex.owl.ui.metadatatab.imports.wizard.FileImportEntry
FileImportPage - Class in edu.stanford.smi.protegex.owl.ui.metadatatab.imports.wizard
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Oct 1, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
FileImportPage(ImportWizard) - Constructor for class edu.stanford.smi.protegex.owl.ui.metadatatab.imports.wizard.FileImportPage
FileInputSource - Class in edu.stanford.smi.protegex.owl.repository.util
FileInputSource(File) - Constructor for class edu.stanford.smi.protegex.owl.repository.util.FileInputSource
fileLanguages - Static variable in class edu.stanford.smi.protegex.owl.jena.JenaKnowledgeBaseFactory
FileSelectionWizardPanel - Class in edu.stanford.smi.protegex.owl.ui.repository.wizard.impl
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Sep 26, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
FileSelectionWizardPanel(WizardPage, boolean, String) - Constructor for class edu.stanford.smi.protegex.owl.ui.repository.wizard.impl.FileSelectionWizardPanel
FillBuff() - Method in class edu.stanford.smi.protegex.owl.model.classparser.compact.JavaCharStream
FillBuff() - Method in class edu.stanford.smi.protegex.owl.model.classparser.dl.JavaCharStream
FillBuff() - Method in class edu.stanford.smi.protegex.owl.model.classparser.manchester.JavaCharStream
FillerTextArea - Class in edu.stanford.smi.protegex.owl.ui.restrictions
  A OWLTextArea to edit the filler in a RestrictionsTable.
FillerTextArea(OWLModel, SymbolErrorDisplay) - Constructor for class edu.stanford.smi.protegex.owl.ui.restrictions.FillerTextArea
fillInheritedItems(Collection) - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTableModel
fillReasoningMenu(OWLModel, JMenu) - Static method in class edu.stanford.smi.protegex.owl.inference.protegeowl.ReasonerPluginMenuManager
filter(Collection) - Static method in class edu.stanford.smi.protegex.owl.ui.cls.HiddenClassTreeRoot
filter - Variable in class edu.stanford.smi.protegex.owl.ui.explorer.ExplorerTreeNode
filterRGB(int, int, int) - Method in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons.DefaultReadOnlyFilter
filterRGB(int, int, int) - Method in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons.InheritedColorfulFilter
filterRGB(int, int, int) - Method in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons.MulticoloredReadOnlyFilter
Find - Interface in edu.stanford.smi.protegex.owl.ui.search.finder
Find.FindStatus - Enum in edu.stanford.smi.protegex.owl.ui.search.finder
FIND_ASSERTS - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
FindAction - Interface in edu.stanford.smi.protegex.owl.ui.search.finder
FindAssertionsAction - Class in edu.stanford.smi.protegex.owl.ui.query
FindAssertionsAction(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.ui.query.FindAssertionsAction
findClass(String) - Method in class edu.stanford.smi.protegex.owl.ui.menu.code.KazukiAction.VocabularyClassLoader
findComponent(Container, Class) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.OWLUI
  Descends into the component tree of a given Container and returns the first sub-component of a given Java class.
findContractSafe() - Method in class edu.stanford.smi.protegex.owl.jena.graph.ProtegeCapabilities
findFirstMatchingFrame() - Method in class edu.stanford.smi.protegex.owl.ui.resourceselection.ResourceFilterListModel
  Finds the first Frame that matches the suffix
FindInDialogAction - Class in edu.stanford.smi.protegex.owl.ui.search.finder
FindInDialogAction(ResultsViewModelFind, Icon, HostResourceDisplay, boolean) - Constructor for class edu.stanford.smi.protegex.owl.ui.search.finder.FindInDialogAction
FindInPanelAction - Class in edu.stanford.smi.protegex.owl.ui.search.finder
FindInPanelAction(ResultsViewModelFind, Icon, HostResourceDisplay, boolean) - Constructor for class edu.stanford.smi.protegex.owl.ui.search.finder.FindInPanelAction
FindResult - Class in edu.stanford.smi.protegex.owl.ui.search.finder
FindResultsListView - Class in edu.stanford.smi.protegex.owl.ui.search.finder
FindResultsListView(ResultsViewModelFind, HostResourceDisplay) - Constructor for class edu.stanford.smi.protegex.owl.ui.search.finder.FindResultsListView
FindResultsPanel - Class in edu.stanford.smi.protegex.owl.ui.search.finder
  A JPanel for modal dialogs that can be used to String-matching search for a certain value of a selected Slot.
FindResultsPanel(Find, AbstractFindResultsView) - Constructor for class edu.stanford.smi.protegex.owl.ui.search.finder.FindResultsPanel
FindResultsTableView - Class in edu.stanford.smi.protegex.owl.ui.search.finder
FindResultsTableView(ResultsViewModelFind, HostResourceDisplay) - Constructor for class edu.stanford.smi.protegex.owl.ui.search.finder.FindResultsTableView
FindRulesAction - Class in edu.stanford.smi.protegex.owl.swrl.ui.actions
  An Action to search for SWRL rules for the selected frame.
FindRulesAction(Selectable) - Constructor for class edu.stanford.smi.protegex.owl.swrl.ui.actions.FindRulesAction
FindRulesAction(Selectable, String) - Constructor for class edu.stanford.smi.protegex.owl.swrl.ui.actions.FindRulesAction
FindSPARQLAssertsTest - Class in edu.stanford.smi.protegex.owl.testing.constraints
FindSPARQLAssertsTest() - Constructor for class edu.stanford.smi.protegex.owl.testing.constraints.FindSPARQLAssertsTest
findSplittingPoint(String) - Static method in class edu.stanford.smi.protegex.owl.model.classparser.ParserUtils
  This routine tries a simple approach to splitting the portion of the text String between 0 and pos-1 into the prefix (which hopefully is well formed) and the suffix which needs to be auto-completed.
FindUsage - Class in edu.stanford.smi.protegex.owl.ui.search
FindUsage() - Constructor for class edu.stanford.smi.protegex.owl.ui.search.FindUsage
FindUsageAction - Class in edu.stanford.smi.protegex.owl.ui.search
FindUsageAction(Selectable) - Constructor for class edu.stanford.smi.protegex.owl.ui.search.FindUsageAction
FindUsageAction(Selectable, String) - Constructor for class edu.stanford.smi.protegex.owl.ui.search.FindUsageAction
FindUsagePanel - Class in edu.stanford.smi.protegex.owl.ui.search
  A JPanel to display the results of a "Find usage" search.
FindUsagePanel(RDFResource, Collection) - Constructor for class edu.stanford.smi.protegex.owl.ui.search.FindUsagePanel
FindUsageTableItem - Class in edu.stanford.smi.protegex.owl.ui.search
  An entry in the FindUsageTableModel.
FindUsageTableItem(int, RDFResource, RDFResource) - Constructor for class edu.stanford.smi.protegex.owl.ui.search.FindUsageTableItem
FindUsageTableModel - Class in edu.stanford.smi.protegex.owl.ui.search
  A TableModel displaying the results of a "find usage" run.
FindUsageTableModel(OWLModel, Collection<FindUsageTableItem>) - Constructor for class edu.stanford.smi.protegex.owl.ui.search.FindUsageTableModel
fireDescriptionChangedEvent() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.AbstractReasonerTask
  Informs registered listeners of a change in task description.
fireDescriptionChangedEvent() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.AbstractReasonerTask
  Informs registered listeners of a change in task description.
fireEditingStopped() - Method in class edu.stanford.smi.protegex.owl.ui.cls.ClassNameTreeCellEditor
fireLogRecordPosted(ReasonerLogRecord) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.log.ReasonerLogger
fireMessageChangedEvent() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.AbstractReasonerTask
  Informs registered listeners of a change in task message
fireMessageChangedEvent() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.AbstractReasonerTask
  Informs registered listeners of a change in task message
firePopupMenuWillBecomeInvisible() - Method in class edu.stanford.smi.protegex.owl.ui.resourceselection.ResourceSelectionComboBox
fireProgressChangedEvent() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.AbstractReasonerTask
  Informs registered listeners of a change in task progress
fireProgressChangedEvent() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.AbstractReasonerTask
  Informs registered listeners of a change in task progress
fireProgressIndeterminateChnaged() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.AbstractReasonerTask
  Informs registered listeners of a change in the state of whether the task progress can be determined or not.
fireProgressIndeterminateChnaged() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.AbstractReasonerTask
  Informs registered listeners of a change in the state of whether the task progress can be determined or not.
fireTaskCompletedEvent() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.AbstractReasonerTask
  Informs registered listeners that the task was completed.
fireTaskCompletedEvent() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.AbstractReasonerTask
  Informs registered listeners that the task was completed.
fireTaskFailedEvent() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.AbstractReasonerTask
  Informs registered listeners that the task failed.
fireTaskFailedEvent() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.AbstractReasonerTask
  Informs registered listeners that the task failed.
FIRST - Static variable in interface edu.stanford.smi.protegex.owl.model.RDFNames.Slot
First - Static variable in class edu.stanford.smi.protegex.owl.swrl.model.SQWRLNames
FIRST - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLConstants.BuiltIns
  Deprecated.
FirstN - Static variable in class edu.stanford.smi.protegex.owl.swrl.model.SQWRLNames
fix(OWLNamedClass) - Static method in class edu.stanford.smi.protegex.owl.testing.style.SubclassesRestrictionDuplicatesThatOfSuperTest
fix(OWLModel) - Static method in class edu.stanford.smi.protegex.owl.ui.menu.OWLBackwardsCompatibilityProjectFixups
fixBrowserSlotPattern(Project, Cls) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.OWLUI
fixBrowserSlotPatterns(Project) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.OWLUI
fixProject(KnowledgeBase) - Method in class edu.stanford.smi.protegex.owl.ui.menu.OWLBackwardsCompatibilityProjectFixups
FL0 - Static variable in class edu.stanford.smi.protegex.owl.model.util.DLExpressivityChecker
FL_MINUS - Static variable in class edu.stanford.smi.protegex.owl.model.util.DLExpressivityChecker
FLOAT - Static variable in interface edu.stanford.smi.protegex.owl.model.XSDNames
FLOATING_POINT_LITERAL - Static variable in interface edu.stanford.smi.protegex.owl.model.classparser.compact.CompactParserConstants
FLOATING_POINT_LITERAL - Static variable in interface edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxParserConstants
FLOATING_POINT_LITERAL - Static variable in interface edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParserConstants
floatTypes - Static variable in class edu.stanford.smi.protegex.owl.model.impl.XMLSchemaDatatypes
FLOOR - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLConstants.BuiltIns
  Deprecated.
FLOOR - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.CoreBuiltIns
FOCUS_COLOR - Static variable in class edu.stanford.smi.protegex.owl.ui.ResourceRenderer
FORCE_READ_ONLY_FLAG - Static variable in class edu.stanford.smi.protegex.owl.repository.util.RepositoryUtil
ForcedURLRetrievalRepository - Class in edu.stanford.smi.protegex.owl.repository.impl
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Sep 21, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
ForcedURLRetrievalRepository(URL) - Constructor for class edu.stanford.smi.protegex.owl.repository.impl.ForcedURLRetrievalRepository
forceReasonerReSynchronization() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.DefaultProtegeOWLReasoner
forceReasonerReSynchronization() - Method in interface edu.stanford.smi.protegex.owl.inference.protegeowl.ProtegeOWLReasoner
  Deprecated. Depending on the implementation of the ProtegeOWLReasoner, some kind of caching may be used.
forceReasonerReSynchronization() - Method in class edu.stanford.smi.protegex.owl.inference.reasoner.AbstractProtegeReasoner
forceReasonerReSynchronization() - Method in interface edu.stanford.smi.protegex.owl.inference.reasoner.ProtegeReasoner
  Depending on the implementation of the ProtegeGenericReasoner, some kind of caching may be used.
forClass - Static variable in class edu.stanford.smi.protegex.owl.ui.forms.FormsNames
FORMAL_COMMENT - Static variable in interface edu.stanford.smi.protegex.owl.model.classparser.compact.CompactParserConstants
FORMAL_COMMENT - Static variable in interface edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxParserConstants
format(LogRecord) - Method in class edu.stanford.smi.protegex.owl.jena.parser.TriplePostProcessorLogFormatter
FormComponent - Class in edu.stanford.smi.protegex.owl.ui.classform.component
FormComponent() - Constructor for class edu.stanford.smi.protegex.owl.ui.classform.component.FormComponent
FormInStandAloneApplicationExample - Class in edu.stanford.smi.protegex.owlx.examples
  An example that allows the user to open a pprj file (with form customizations) and then asks for an individual to edit in a stand-alone window.
FormInStandAloneApplicationExample() - Constructor for class edu.stanford.smi.protegex.owlx.examples.FormInStandAloneApplicationExample
FORMS_FILENAME - Static variable in class edu.stanford.smi.protegex.owl.ui.forms.ProtegeFormsNames
FORMS_ONTOLOGY - Static variable in class edu.stanford.smi.protegex.owl.ui.forms.ProtegeFormsNames
FORMS_RELATIVE_DIR - Static variable in class edu.stanford.smi.protegex.owl.ui.forms.ProtegeFormsNames
FormsNames - Class in edu.stanford.smi.protegex.owl.ui.forms
  Vocabulary definitions from /work/src/protege-owl/plugins/edu.stanford.smi.protegex.owl/forms/forms.owl
FormsNames() - Constructor for class edu.stanford.smi.protegex.owl.ui.forms.FormsNames
FormsSettingsPanel - Class in edu.stanford.smi.protegex.owl.ui.menu.preferences
FormsSettingsPanel(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.ui.menu.preferences.FormsSettingsPanel
FormWidget - Static variable in class edu.stanford.smi.protegex.owl.ui.forms.FormsNames
forProperty - Static variable in class edu.stanford.smi.protegex.owl.ui.forms.FormsNames
forward() - Method in class edu.stanford.smi.protegex.owl.ui.navigation.NavigationHistoryManager
FRACTION_DIGITS - Static variable in class edu.stanford.smi.protegex.owl.model.XSPNames
  Deprecated. use the helper method `XSPNames.get(int resourceID)`
FrameCreatorUtility - Class in edu.stanford.smi.protegex.owl.jena.parser
FrameCreatorUtility() - Constructor for class edu.stanford.smi.protegex.owl.jena.parser.FrameCreatorUtility
FrameListPopupMenuMouseListener - Class in edu.stanford.smi.protegex.owl.ui.actions
FrameListPopupMenuMouseListener(JList) - Constructor for class edu.stanford.smi.protegex.owl.ui.actions.FrameListPopupMenuMouseListener
frameNameChanged(KnowledgeBaseEvent) - Method in class edu.stanford.smi.protegex.owl.model.event.ModelAdapter
  Deprecated.
frameNameChanged(KnowledgeBaseEvent) - Method in interface edu.stanford.smi.protegex.owl.model.event.ProtegeKnowledgeBaseListener
  Deprecated.
FrameTypeId2OWLJavaClass - Class in edu.stanford.smi.protegex.owl.model.factory
  Class for storing the mapping between the frame type ids and the corresponding Java classes.
FrameTypeId2OWLJavaClass() - Constructor for class edu.stanford.smi.protegex.owl.model.factory.FrameTypeId2OWLJavaClass
FROM - Static variable in interface edu.stanford.smi.protegex.owl.model.ProtegeNames.Slot
fs - Variable in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames.SystemFramesAsserter
ftpGet() - Method in class edu.stanford.smi.protegex.owl.repository.impl.FTPRepository
ftpPut() - Method in class edu.stanford.smi.protegex.owl.repository.impl.FTPRepository
FTPRepository - Class in edu.stanford.smi.protegex.owl.repository.impl
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Oct 3, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
FTPRepository(URI, URI) - Constructor for class edu.stanford.smi.protegex.owl.repository.impl.FTPRepository
FTPRepositoryFactoryPlugin - Class in edu.stanford.smi.protegex.owl.repository.impl
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Oct 3, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
FTPRepositoryFactoryPlugin() - Constructor for class edu.stanford.smi.protegex.owl.repository.impl.FTPRepositoryFactoryPlugin
FTPRepositoryPasswordProvider - Interface in edu.stanford.smi.protegex.owl.repository.impl
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Oct 3, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
FUNCTIONAL - Static variable in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGVocabulary.Tell
FUNCTIONAL_PROPERTY - Static variable in interface edu.stanford.smi.protegex.owl.model.OWLNames.Cls
functionalDatatypePropertyTypes - Variable in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames.SystemFramesAsserter

## G

generate(OntModelProvider, File, String) - Static method in class edu.stanford.smi.protegex.owl.ui.jena.JenaSchemagenAction
generate(OntModelProvider, File, String, String, boolean) - Static method in class edu.stanford.smi.protegex.owl.ui.menu.code.KazukiAction
generateFiles(String) - Method in class edu.stanford.smi.protegex.owl.ui.forms.AbsoluteFormsGenerator
generateOntologyURIBase() - Static method in class edu.stanford.smi.protegex.owl.model.factory.FactoryUtils
generateParseException() - Method in class edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxParser
generateParseException() - Method in class edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParser
get(int) - Method in class edu.stanford.smi.protegex.owl.ui.search.finder.FindResult
get(OWLModel) - Static method in class edu.stanford.smi.protegex.owl.ui.subsumption.ChangedClassesPanel
GET_IDENTIFIER - Static variable in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGVocabulary.Management
GET_INFERRED_SUBCLASSES - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
GET_INFERRED_SUPERCLASSES - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
getAboutURL() - Static method in class edu.stanford.smi.protegex.owl.resource.OWLText
getAbstractMode() - Method in interface edu.stanford.smi.protegex.owl.javacode.JavaCodeGeneratorOptions
getAbstractMode() - Method in class edu.stanford.smi.protegex.owl.javacode.ProjectBasedJavaCodeGeneratorOptions
getAbstractOWLModel() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
getAbstractProperty(OntModel) - Static method in class edu.stanford.smi.protegex.owl.model.ProtegeNames
getActions() - Method in class edu.stanford.smi.protegex.owl.ui.properties.OWLAnnotationPropertySubpropertyPane
getActions() - Method in class edu.stanford.smi.protegex.owl.ui.properties.OWLDatatypePropertySubpropertyPane
getActions() - Method in class edu.stanford.smi.protegex.owl.ui.properties.OWLObjectPropertySubpropertyPane
getActions() - Method in class edu.stanford.smi.protegex.owl.ui.properties.OWLSubpropertyPane
getActions(Repository, OWLModel) - Method in class edu.stanford.smi.protegex.owl.ui.repository.action.RepositoryActionManager
getActiveOntology(OWLModel) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
getActiveTripleStore() - Method in class edu.stanford.smi.protegex.owl.model.triplestore.impl.TripleStoreModelImpl
getActiveTripleStore() - Method in interface edu.stanford.smi.protegex.owl.model.triplestore.TripleStoreModel
  Gets the currently "active" TripleStore, which all future set operations will be operating on.
getActiveTripleStore() - Method in class edu.stanford.smi.protegex.owl.server.triplestore.ClientTripleStoreModel
getActiveTripleStore() - Method in class edu.stanford.smi.protegex.owl.server.triplestore.Package
getActiveWidgetClass() - Method in class edu.stanford.smi.protegex.owl.ui.cls.SwitchableClassDefinitionWidget
getAddIcon() - Static method in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
getAddIcon(String) - Static method in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
getAddIcon(String, Class) - Static method in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
getAllImports() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getAllImports() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets all (transitive) imports in this OWLModel.
getAllKeyword() - Static method in class edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParserUtil
getAllOntologies() - Static method in class edu.stanford.smi.protegex.owl.jena.parser.OWLImportsCache
getAllowedClses(Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
getAllowedClses() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeSlot
  Deprecated.
getAllowedParentProperty(OntModel) - Static method in class edu.stanford.smi.protegex.owl.model.ProtegeNames
getAllowedParents(Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not supported in OWL
getAllowedParents() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeSlot
  Deprecated. set the value of the protege:allowedParents property directly
getAllowedProperties(OWLModel) - Method in class edu.stanford.smi.protegex.owl.ui.components.triples.AddResourceAction
getAllowedProperties(OWLModel) - Method in class edu.stanford.smi.protegex.owl.ui.components.triples.CreateValueAction
getAllowedValues(Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
getAllowedValues() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeSlot
  Deprecated. compare to OWLDataRange as range
getAllOWLIndividuals(OWLModel) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getAllowsMultipleValues(Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
getAllowsMultipleValues() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeSlot
  Deprecated.
getAllRepositories() - Method in class edu.stanford.smi.protegex.owl.repository.RepositoryManager
getAllRestrictionIcon() - Static method in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
getAllTypes() - Static method in class edu.stanford.smi.protegex.owl.model.impl.XMLSchemaDatatypes
getAllValuesFrom() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLAllValuesFrom
getAllValuesFrom(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLNamedClass
getAllValuesFrom() - Method in interface edu.stanford.smi.protegex.owl.model.OWLAllValuesFrom
  Gets the owl:allValuesFrom filler.
getAllValuesFrom(RDFProperty) - Method in interface edu.stanford.smi.protegex.owl.model.OWLNamedClass
  Gets the allowed class for a given property.
getAllValuesFromCount() - Method in class edu.stanford.smi.protegex.owl.model.util.ModelMetrics
getAllValuesFromOnTypes(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
getAllValuesFromOnTypes(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFIndividual
getAllValuesFromOnTypes(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
getAllValuesFromOnTypes(RDFResource, RDFProperty) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
getAllValuesFromOnTypes(RDFProperty) - Method in interface edu.stanford.smi.protegex.owl.model.RDFResource
  Checks for rdfs:range or owl:allValuesFrom restrictions on the types of this resource.
getAncestorClasses(OWLClass, ReasonerTaskListener) - Method in class edu.stanford.smi.protegex.owl.inference.dig.DefaultProtegeDIGReasoner
getAncestorClasses(OWLClass) - Method in class edu.stanford.smi.protegex.owl.inference.dig.DefaultProtegeDIGReasoner
getAncestorClasses(OWLClass, ReasonerTaskListener) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.DefaultProtegeOWLReasoner
getAncestorClasses(OWLClass, ReasonerTaskListener) - Method in interface edu.stanford.smi.protegex.owl.inference.protegeowl.ProtegeOWLReasoner
  Deprecated. Gets the inferred ancestor classes of the specified class.
getAncestorClasses(OWLClass) - Method in class edu.stanford.smi.protegex.owl.inference.reasoner.AbstractProtegeReasoner
getAncestorClasses(OWLClass) - Method in interface edu.stanford.smi.protegex.owl.inference.reasoner.ProtegeReasoner
  Gets the inferred ancestor classes of the specified class.
GetAncestorConceptsTask - Class in edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Aug 17, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
GetAncestorConceptsTask(OWLClass, ProtegeOWLReasoner) - Constructor for class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.GetAncestorConceptsTask
GetAncestorConceptsTask - Class in edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Aug 17, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
GetAncestorConceptsTask(OWLClass, ProtegeReasoner) - Constructor for class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.GetAncestorConceptsTask
getAncestorProperties(OWLProperty) - Method in class edu.stanford.smi.protegex.owl.inference.reasoner.AbstractProtegeReasoner
getAncestorProperties(OWLProperty) - Method in interface edu.stanford.smi.protegex.owl.inference.reasoner.ProtegeReasoner
getAndIcon() - Static method in class edu.stanford.smi.protegex.owl.swrl.ui.icons.SWRLIcons
getAndKeyword() - Static method in class edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParserUtil
getAnnotationProperty() - Method in class edu.stanford.smi.protegex.owl.ui.matrix.AnnotationPropertyMatrixColumn
getAnnotationPropertyCount() - Method in class edu.stanford.smi.protegex.owl.model.util.ModelMetrics
getAnnotationTextAreaWidget() - Method in class edu.stanford.smi.protegex.owl.ui.metadata.NameDocumentationWidget
  Deprecated.
getAnonymousClassMetaCls() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getAnonymousClassMetaCls() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getAnonymousRootCls() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getAnonymousRootCls() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getAnonymousRootCls() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Deprecated. internal Protege detail
getArchiveProjectIcon() - Static method in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
getArgsProperty() - Method in class edu.stanford.smi.protegex.owl.swrl.SWRLSystemFrames
getArgument1() - Method in class edu.stanford.smi.protegex.owl.swrl.model.impl.AbstractSWRLIndividualsAtom
getArgument1() - Method in class edu.stanford.smi.protegex.owl.swrl.model.impl.DefaultSWRLClassAtom
getArgument1() - Method in class edu.stanford.smi.protegex.owl.swrl.model.impl.DefaultSWRLDataRangeAtom
  This argument is either an RDFList of RDFSLiterals, or a SWRLVariable.
getArgument1() - Method in class edu.stanford.smi.protegex.owl.swrl.model.impl.DefaultSWRLDatavaluedPropertyAtom
getArgument1() - Method in class edu.stanford.smi.protegex.owl.swrl.model.impl.DefaultSWRLIndividualPropertyAtom
getArgument1() - Method in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLClassAtom
getArgument1() - Method in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLDataRangeAtom
  This argument is either an RDFList of RDFSLiterals, or a SWRLVariable.
getArgument1() - Method in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLDatavaluedPropertyAtom
getArgument1() - Method in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLIndividualPropertyAtom
getArgument1() - Method in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLIndividualsAtom
getArgument1Property() - Method in class edu.stanford.smi.protegex.owl.swrl.SWRLSystemFrames
getArgument2() - Method in class edu.stanford.smi.protegex.owl.swrl.model.impl.AbstractSWRLIndividualsAtom
getArgument2() - Method in class edu.stanford.smi.protegex.owl.swrl.model.impl.DefaultSWRLDatavaluedPropertyAtom
getArgument2() - Method in class edu.stanford.smi.protegex.owl.swrl.model.impl.DefaultSWRLIndividualPropertyAtom
getArgument2() - Method in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLDatavaluedPropertyAtom
getArgument2() - Method in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLIndividualPropertyAtom
getArgument2() - Method in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLIndividualsAtom
getArgument2Property() - Method in class edu.stanford.smi.protegex.owl.swrl.SWRLSystemFrames
getArguments() - Method in class edu.stanford.smi.protegex.owl.swrl.model.impl.DefaultSWRLBuiltinAtom
getArguments() - Method in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLBuiltinAtom
getArgumentsProperty() - Method in class edu.stanford.smi.protegex.owl.swrl.SWRLSystemFrames
getAssertChangeIcon() - Static method in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
getAssertedConditionsWidget() - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsWidget
  Deprecated.
getAssociatedFacet(Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not supported in OWL
getAssociatedFacet() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeSlot
  Deprecated. no OWL equivalent
getAssociatedProperties() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLNamedClass
getAssociatedProperties() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFSNamedClass
getAssociatedProperties() - Method in interface edu.stanford.smi.protegex.owl.model.RDFSNamedClass
  Gets all properties that have been associated with this class.
getAssociatedSlot(Facet) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not needed
getAtomCls() - Method in class edu.stanford.smi.protegex.owl.swrl.SWRLSystemFrames
getAtomListCls() - Method in class edu.stanford.smi.protegex.owl.swrl.SWRLSystemFrames
getAvailableDisplayClasses() - Static method in class edu.stanford.smi.protegex.owl.model.classdisplay.OWLClassDisplayFactory
getAvailableReasonerPluginClasses() - Static method in class edu.stanford.smi.protegex.owl.inference.protegeowl.ReasonerPluginManager
getBackAction() - Method in class edu.stanford.smi.protegex.owl.ui.navigation.NavigationHistoryManager
getBackspaceIcon() - Static method in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
getBackwardCompatibleWith() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLOntology
getBackwardCompatibleWith() - Method in interface edu.stanford.smi.protegex.owl.model.OWLOntology
getBaseDatatype() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFSDatatype
getBaseDatatype() - Method in interface edu.stanford.smi.protegex.owl.model.RDFSDatatype
  If this is a user-defined datatype, then this method gets the restricted base type.
getBaseImageIcon() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLProperty
getBaseImageIcon() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
getBaseImplementation(RDFSNamedClass) - Method in class edu.stanford.smi.protegex.owl.javacode.JavaCodeGenerator
getBaseInterface(RDFSNamedClass) - Method in class edu.stanford.smi.protegex.owl.javacode.JavaCodeGenerator
getBaseInterfaces(RDFSNamedClass) - Method in class edu.stanford.smi.protegex.owl.emf.EMFGenerator
getBasePropertyMetaclass() - Method in class edu.stanford.smi.protegex.owl.ui.clsproperties.AddPropertyAction
getBaseURL() - Method in class edu.stanford.smi.protegex.owl.ui.repository.wizard.impl.RelativeURLSpecificationWizardPanel
getBeginColumn() - Method in class edu.stanford.smi.protegex.owl.model.classparser.compact.JavaCharStream
getBeginColumn() - Method in class edu.stanford.smi.protegex.owl.model.classparser.dl.JavaCharStream
getBeginColumn() - Method in class edu.stanford.smi.protegex.owl.model.classparser.manchester.JavaCharStream
getBeginLine() - Method in class edu.stanford.smi.protegex.owl.model.classparser.compact.JavaCharStream
getBeginLine() - Method in class edu.stanford.smi.protegex.owl.model.classparser.dl.JavaCharStream
getBeginLine() - Method in class edu.stanford.smi.protegex.owl.model.classparser.manchester.JavaCharStream
getBestMatch(List, String) - Method in class edu.stanford.smi.protegex.owl.ui.subsumption.SubsumptionTreeFinder
getBlockSize(int) - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTableModel
getBlockText(int) - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTableModel
  Gets a string of the form [& ] from all rows of a given block.
getBody() - Method in class edu.stanford.smi.protegex.owl.swrl.model.impl.DefaultSWRLImp
getBody() - Method in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLImp
getBodyProperty() - Method in class edu.stanford.smi.protegex.owl.swrl.SWRLSystemFrames
getBoolean() - Method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DefaultDIGQueryResponse
getBoolean() - Method in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGQueryResponse
  If the query resultied in a boolean response, for example asking if a concept was satisfiable, then this method may be used to get the boolean result.
getBoolean() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFSLiteral
getBoolean(String) - Method in class edu.stanford.smi.protegex.owl.model.project.DefaultSettingsMap
getBoolean(String) - Method in interface edu.stanford.smi.protegex.owl.model.project.SettingsMap
getBoolean() - Method in interface edu.stanford.smi.protegex.owl.model.RDFSLiteral
  Gets the value as a boolean.
getBooleanProperty(String, String) - Static method in class edu.stanford.smi.protegex.owl.repository.util.RepositoryUtil
getBrowserSlotPattern() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
getBrowserSlotPattern() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeCls
getBrowserText() - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.dl.DLSyntaxBrowserTextGenerator
getBrowserText() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLAnonymousClass
getBrowserText(Instance) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getBrowserText() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLAllDifferent
getBrowserText() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLDataRange
getBrowserText() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLOntology
getBrowserText() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFExternalResource
getBrowserText() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFList
getBrowserText() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFSDatatype
getBrowserText() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFSLiteral
getBrowserText() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeInstance
getBrowserText(Instance) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
getBrowserText() - Method in interface edu.stanford.smi.protegex.owl.model.RDFObject
getBrowserText() - Method in interface edu.stanford.smi.protegex.owl.model.RDFResource
  Gets a human-readable visual representation of this resource.
getBrowserText() - Method in class edu.stanford.smi.protegex.owl.swrl.model.impl.AbstractSWRLIndividualsAtom
getBrowserText() - Method in class edu.stanford.smi.protegex.owl.swrl.model.impl.DefaultSWRLAtom
getBrowserText() - Method in class edu.stanford.smi.protegex.owl.swrl.model.impl.DefaultSWRLAtomList
getBrowserText() - Method in class edu.stanford.smi.protegex.owl.swrl.model.impl.DefaultSWRLBuiltinAtom
getBrowserText() - Method in class edu.stanford.smi.protegex.owl.swrl.model.impl.DefaultSWRLClassAtom
getBrowserText() - Method in class edu.stanford.smi.protegex.owl.swrl.model.impl.DefaultSWRLDataRangeAtom
getBrowserText() - Method in class edu.stanford.smi.protegex.owl.swrl.model.impl.DefaultSWRLDatavaluedPropertyAtom
getBrowserText() - Method in class edu.stanford.smi.protegex.owl.swrl.model.impl.DefaultSWRLImp
getBrowserText() - Method in class edu.stanford.smi.protegex.owl.swrl.model.impl.DefaultSWRLIndividualPropertyAtom
getBrowserText() - Method in class edu.stanford.smi.protegex.owl.swrl.model.impl.DefaultSWRLVariable
getBrowserText(Instance) - Method in class edu.stanford.smi.protegex.owl.util.OWLBrowserSlotPattern
getBrowserText() - Method in class edu.stanford.smi.protegex.owlx.examples.javaDemo.model.impl.DefaultCustomer
getBrowserTextFiller() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLRestriction
getBrowserTextPattern() - Method in class edu.stanford.smi.protegex.owl.ui.individuals.MultiSlotPanel
getBrowserTextPropertyName() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLRestriction
  Gets a displayable form of the restricted slot.
getBuildInfo() - Static method in class edu.stanford.smi.protegex.owl.resource.OWLText
getBuildNumber() - Static method in class edu.stanford.smi.protegex.owl.resource.OWLText
getBuildProjectURI(File) - Method in class edu.stanford.smi.protegex.owl.jena.CreateOWLProjectFromFilePlugin
getBuildProjectURI() - Method in class edu.stanford.smi.protegex.owl.jena.creator.OwlProjectFromUriCreator
getBuildProjectURI() - Method in class edu.stanford.smi.protegex.owl.storage.ProtegeFromOWLFilesCreateProjectPlugin
getBuiltin() - Method in class edu.stanford.smi.protegex.owl.swrl.model.impl.DefaultSWRLBuiltinAtom
getBuiltin() - Method in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLBuiltinAtom
getBuiltin(String) - Method in class edu.stanford.smi.protegex.owl.swrl.model.SWRLFactory
getBuiltinAtomCls() - Method in class edu.stanford.smi.protegex.owl.swrl.SWRLSystemFrames
getBuiltInCls() - Method in class edu.stanford.smi.protegex.owl.swrl.SWRLSystemFrames
getBuiltinIcon() - Static method in class edu.stanford.smi.protegex.owl.swrl.ui.icons.SWRLIcons
getBuiltInProperty() - Method in class edu.stanford.smi.protegex.owl.swrl.SWRLSystemFrames
getBuiltins() - Method in class edu.stanford.smi.protegex.owl.swrl.model.SWRLFactory
getButtonText() - Method in class edu.stanford.smi.protegex.owl.ui.classform.form.ClassFormSwitchableType
getButtonText() - Method in class edu.stanford.smi.protegex.owl.ui.cls.LogicClassDefinitionWidgetType
getButtonText() - Method in class edu.stanford.smi.protegex.owl.ui.cls.PropertiesClassDefinitionWidgetType
getButtonText() - Method in interface edu.stanford.smi.protegex.owl.ui.cls.SwitchableType
getBytes() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFSLiteral
getBytes() - Method in interface edu.stanford.smi.protegex.owl.model.RDFSLiteral
  Gets the appropriate byte array if the value has datatype xsd:base64Binary
getCachedFramesWithNoSuperclass() - Method in class edu.stanford.smi.protegex.owl.jena.parser.SuperClsCache
getCacheMachine() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getCapabilities() - Method in class edu.stanford.smi.protegex.owl.jena.graph.ProtegeGraph
getCardinality() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLCardinalityBase
getCardinality() - Method in interface edu.stanford.smi.protegex.owl.model.OWLCardinalityBase
  Gets the cardinality value in this restriction.
getCardinalityCount() - Method in class edu.stanford.smi.protegex.owl.model.util.ModelMetrics
getCause() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.log.MessageLogRecord
  Gets the cause of this warning.
getCellEditor(int, int) - Method in class edu.stanford.smi.protegex.owl.ui.components.literaltable.LiteralTable
getCellEditor(int, int) - Method in class edu.stanford.smi.protegex.owl.ui.components.triples.TriplesTable
getCellEditor(int, int) - Method in class edu.stanford.smi.protegex.owl.ui.matrix.MatrixTable
getCellEditorValue() - Method in class edu.stanford.smi.protegex.owl.ui.cls.ClassNameTreeCellEditor
getCellEditorValue() - Method in class edu.stanford.smi.protegex.owl.ui.code.SymbolCellEditor
getCellEditorValue() - Method in class edu.stanford.smi.protegex.owl.ui.components.annotations.AnnotationsLangEditor
getCellEditorValue() - Method in class edu.stanford.smi.protegex.owl.ui.components.annotations.AnnotationsValueEditor
getCellRenderer(int, int) - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTable
getCellRenderer() - Method in class edu.stanford.smi.protegex.owl.ui.matrix.AbstractMatrixColumn
getCellRenderer() - Method in class edu.stanford.smi.protegex.owl.ui.matrix.AnnotationPropertyMatrixColumn
getCellRenderer() - Method in class edu.stanford.smi.protegex.owl.ui.matrix.cls.ClassConditionsMatrixColumn
getCellRenderer() - Method in class edu.stanford.smi.protegex.owl.ui.matrix.cls.ExistentialMatrixColumn
getCellRenderer() - Method in interface edu.stanford.smi.protegex.owl.ui.matrix.MatrixColumn
getCellRenderer() - Method in class edu.stanford.smi.protegex.owl.ui.matrix.NameMatrixColumn
getCellRenderer() - Method in class edu.stanford.smi.protegex.owl.ui.matrix.PrefixMatrixColumn
getCellRenderer() - Method in class edu.stanford.smi.protegex.owl.ui.matrix.property.InversePropertyMatrixColumn
getCellRenderer() - Method in class edu.stanford.smi.protegex.owl.ui.matrix.property.PropertyCharacteristicsMatrixColumn
getCellRenderer() - Method in class edu.stanford.smi.protegex.owl.ui.matrix.property.PropertyDomainMatrixColumn
getCellRenderer() - Method in class edu.stanford.smi.protegex.owl.ui.matrix.property.PropertyRangeMatrixColumn
getCenterComponent() - Method in class edu.stanford.smi.protegex.owl.ui.widget.OWLDateTimeWidget
getCenterComponent() - Method in class edu.stanford.smi.protegex.owl.ui.widget.OWLDateWidget
getChangeCount() - Method in class edu.stanford.smi.protegex.owl.ui.subsumption.ChangedClassesPanel
getChangedInferredClasses() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getChangedInferredClasses() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets all named classes where the classification status is OWLNames.CLASSIFICATION_STATUS_CONSISTENT_AND_CHANGED, i.e.
getChangeText(Cls) - Method in class edu.stanford.smi.protegex.owl.ui.subsumption.ChangedClassesPanel
getChangeText(Cls) - Method in class edu.stanford.smi.protegex.owl.ui.subsumption.ChangedClassesTableModel
getCheckConsistencyIcon() - Static method in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
getChecker() - Static method in class edu.stanford.smi.protegex.owl.writer.rdfxml.renderer.RDFAxiomRenderer
getChild(Object, int) - Method in class edu.stanford.smi.protegex.owl.ui.existential.ExistentialTreeModel
getChildCount(Object) - Method in class edu.stanford.smi.protegex.owl.ui.existential.ExistentialTreeModel
getChildNode(int) - Method in class edu.stanford.smi.protegex.owl.ui.explorer.ExplorerTreeNode
getChildObjectCount() - Method in class edu.stanford.smi.protegex.owl.ui.cls.ClassTreeNode
getChildObjectCount() - Method in class edu.stanford.smi.protegex.owl.ui.cls.ClassTreeWithBrowserTextNode
getChildObjectCount() - Method in class edu.stanford.smi.protegex.owl.ui.cls.HiddenClassTreeNode
getChildObjectCount() - Method in class edu.stanford.smi.protegex.owl.ui.existential.ExistentialTreeNode
getChildObjectCount() - Method in class edu.stanford.smi.protegex.owl.ui.explorer.ExplorerTreeNode
getChildObjectCount() - Method in class edu.stanford.smi.protegex.owl.ui.importstree.ImportsTreeNode
getChildObjectCount() - Method in class edu.stanford.smi.protegex.owl.ui.subsumption.SubsumptionTreeNode
getChildObjects() - Method in class edu.stanford.smi.protegex.owl.ui.cls.ClassTreeNode
getChildObjects() - Method in class edu.stanford.smi.protegex.owl.ui.cls.ClassTreeWithBrowserTextNode
getChildObjects() - Method in class edu.stanford.smi.protegex.owl.ui.cls.HiddenClassTreeNode
getChildObjects() - Method in class edu.stanford.smi.protegex.owl.ui.existential.ExistentialTreeNode
getChildObjects() - Method in class edu.stanford.smi.protegex.owl.ui.explorer.ExplorerTreeNode
getChildObjects() - Method in class edu.stanford.smi.protegex.owl.ui.importstree.ImportsTreeNode
getChildObjects() - Method in class edu.stanford.smi.protegex.owl.ui.properties.OWLPropertySubpropertyNode
getChildObjects() - Method in class edu.stanford.smi.protegex.owl.ui.subsumption.SubsumptionTreeNode
getChildren(Object) - Method in class edu.stanford.smi.protegex.owl.ui.existential.ExistentialTreeModel
getClass(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getClass(OWLModel, URI) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getClass(int) - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.DisjointClassesTableModel
getClass(int) - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTableModel
  Gets the RDFSClass displayed at a given row.
getClass(int) - Method in class edu.stanford.smi.protegex.owl.ui.owltable.AbstractOWLTableModel
getClass(int) - Method in interface edu.stanford.smi.protegex.owl.ui.owltable.OWLTableModel
getClassAtomCls() - Method in class edu.stanford.smi.protegex.owl.swrl.SWRLSystemFrames
getClassesIcon() - Static method in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
getClassesOfIndividual(OWLIndividual) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getClassesTree() - Method in class edu.stanford.smi.protegex.owl.ui.explorer.ExplorerTreePanel
getClassificationResults() - Method in class edu.stanford.smi.protegex.owl.ui.subsumption.ChangedClassesPanel
getClassificationStatus() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLNamedClass
getClassificationStatus() - Method in interface edu.stanford.smi.protegex.owl.model.OWLNamedClass
  Gets the classification status (whether this class is marked as inconsistent or not).
getClassifyIcon() - Static method in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
getClassifyIndividualIcon() - Static method in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
getClassListener() - Method in class edu.stanford.smi.protegex.owl.inference.reasoner.AbstractProtegeReasoner
getClassPredicate() - Method in class edu.stanford.smi.protegex.owl.swrl.model.impl.DefaultSWRLClassAtom
getClassPredicate() - Method in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLClassAtom
getClassPredicateProperty() - Method in class edu.stanford.smi.protegex.owl.swrl.SWRLSystemFrames
getClassRow(RDFSClass) - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.DisjointClassesTableModel
getClassRow(RDFSClass) - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTableModel
getClassRow(RDFSClass) - Method in class edu.stanford.smi.protegex.owl.ui.owltable.AbstractOWLTableModel
getClassRow(RDFSClass) - Method in interface edu.stanford.smi.protegex.owl.ui.owltable.OWLTableModel
getClipboard() - Method in class edu.stanford.smi.protegex.owl.ui.owltable.SymbolTable
getCloseBrackets() - Static method in class edu.stanford.smi.protegex.owl.swrl.ui.icons.SWRLIcons
getCloseIcon() - Static method in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
getCloseParenthesis() - Static method in class edu.stanford.smi.protegex.owl.swrl.ui.icons.SWRLIcons
getClosureAxiom(OWLNamedClass, OWLExistentialRestriction) - Static method in class edu.stanford.smi.protegex.owl.model.util.ClosureAxiomFactory
  Checks whether a closure axiom exists for a given class/property pair.
getClosureAxiom(OWLNamedClass, RDFProperty) - Static method in class edu.stanford.smi.protegex.owl.model.util.ClosureAxiomFactory
  Use to find a potential restriction as a base for adding closure on a particular property Will only return universals that have a named class or union of named classes as filler
getClosureAxiom(OWLNamedClass, RDFProperty, RDFResource) - Static method in class edu.stanford.smi.protegex.owl.model.util.ClosureAxiomFactory
  Use to find a closure axiom for a given property (that already contains the given filler)
getCls() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.AbstractSingleConceptWithConceptCollectionResultTask
getCls() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.AbstractSingleConceptWithConceptCollectionResultTask
getCls(String) - Method in class edu.stanford.smi.protegex.owl.jena.parser.AbstractStatefulTripleProcessor
getCls(Frame) - Method in class edu.stanford.smi.protegex.owl.jena.parser.AbstractStatefulTripleProcessor
getCls(String) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
getCls() - Method in class edu.stanford.smi.protegex.owl.ui.cls.ClassTreeNode
getCls() - Method in class edu.stanford.smi.protegex.owl.ui.cls.ClassTreeWithBrowserTextNode
getCls() - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTableItem
getCls(int) - Method in class edu.stanford.smi.protegex.owl.ui.matrix.cls.ClassMatrixTableModel
getCls(int) - Method in class edu.stanford.smi.protegex.owl.ui.subsumption.ChangedClassesTableModel
getCls() - Method in class edu.stanford.smi.protegex.owl.ui.subsumption.SubsumptionTreeNode
getClsCount() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
getClses() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
getClsesTab(Component) - Static method in class edu.stanford.smi.protegex.owl.ui.cls.OWLClassesTab
  Deprecated. use getOWLClassesTab instead
getClsesTab() - Method in class edu.stanford.smi.protegex.owl.ui.conditions.AbstractConditionsWidget
getClsesToDelete(Cls) - Method in class edu.stanford.smi.protegex.owl.model.framestore.OWLFrameStore
  A slighly adjusted version of DeleteSimplificationFrameStore that ignores links through the anonymous root class.
getClsesTree() - Method in class edu.stanford.smi.protegex.owl.ui.cls.AssertedClassesPanel
getClsesTree() - Method in class edu.stanford.smi.protegex.owl.ui.existential.ExistentialTreePanel
getClsesTree() - Method in class edu.stanford.smi.protegex.owl.ui.subsumption.SubsumptionTreePanel
getClsesWithMatchingBrowserText(String, Collection, int) - Method in class edu.stanford.smi.protegex.owl.model.framestore.OWLFrameStore
getClsIcon(Cls) - Method in class edu.stanford.smi.protegex.owl.ui.ResourceRenderer
getClsIcon(Cls) - Static method in class edu.stanford.smi.protegex.owl.ui.restrictions.RestrictionKindRenderer
getClsIconName(Cls) - Static method in class edu.stanford.smi.protegex.owl.ui.restrictions.RestrictionKindRenderer
getClsName(RDFIndividual) - Static method in class edu.stanford.smi.protegex.owl.ui.actions.ConvertIndividualToClassAction
getClsName(Cls) - Static method in class edu.stanford.smi.protegex.owl.ui.restrictions.RestrictionKindRenderer
getClsNameMatches(String, int) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Get classes whose name matches the give string.
getClsSlots() - Method in class edu.stanford.smi.protegex.owl.ui.widget.OWLFormWidget
getClsTree() - Method in class edu.stanford.smi.protegex.owl.ui.cls.OWLClassesTab
getCollectionCreateBuiltInNames() - Static method in class edu.stanford.smi.protegex.owl.swrl.model.SQWRLNames
getCollectionGroupByBuiltInNames() - Static method in class edu.stanford.smi.protegex.owl.swrl.model.SQWRLNames
getCollectionMakeBuiltInNames() - Static method in class edu.stanford.smi.protegex.owl.swrl.model.SQWRLNames
getCollectionOperationBuiltInNames() - Static method in class edu.stanford.smi.protegex.owl.swrl.model.SQWRLNames
getColumn() - Method in class edu.stanford.smi.protegex.owl.model.classparser.compact.JavaCharStream
  Deprecated.
getColumn() - Method in class edu.stanford.smi.protegex.owl.model.classparser.dl.JavaCharStream
  Deprecated.
getColumn() - Method in class edu.stanford.smi.protegex.owl.model.classparser.manchester.JavaCharStream
  Deprecated.
getColumnClass(int) - Method in class edu.stanford.smi.protegex.owl.swrl.ui.table.SWRLTableModel
getColumnClass(int) - Method in class edu.stanford.smi.protegex.owl.ui.classform.component.property.PropertyFormTableModel
getColumnClass(int) - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.DisjointClassesTableModel
getColumnClass(int) - Method in class edu.stanford.smi.protegex.owl.ui.clsproperties.RDFPropertiesTableModel
getColumnClass(int) - Method in class edu.stanford.smi.protegex.owl.ui.components.literaltable.LiteralTableModel
getColumnClass(int) - Method in class edu.stanford.smi.protegex.owl.ui.components.triples.TriplesTableModel
getColumnClass(int) - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTableModel
getColumnClass(int) - Method in class edu.stanford.smi.protegex.owl.ui.matrix.MatrixTableModel
getColumnClass(int) - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.imports.ImportsTableModel
getColumnClass(int) - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.prefixes.PrefixesTableModel
getColumnClass(int) - Method in class edu.stanford.smi.protegex.owl.ui.metrics.lang.DLExpressivityTableModel
getColumnClass(int) - Method in class edu.stanford.smi.protegex.owl.ui.owltable.AbstractOWLTableModel
getColumnClass(int) - Method in class edu.stanford.smi.protegex.owl.ui.properties.domain.OWLDomainTableModel
getColumnClass(int) - Method in class edu.stanford.smi.protegex.owl.ui.search.FindUsageTableModel
getColumnClass(int) - Method in class edu.stanford.smi.protegex.owl.ui.subsumption.ChangedClassesTableModel
getColumnClass(int) - Method in class edu.stanford.smi.protegex.owl.ui.testing.OWLTestResultsTableModel
getColumnClass(int) - Method in class edu.stanford.smi.protegex.owl.ui.testing.OWLTestSettingsTableModel
getColumnCount() - Method in class edu.stanford.smi.protegex.owl.swrl.ui.table.SWRLTableModel
getColumnCount() - Method in class edu.stanford.smi.protegex.owl.ui.classform.component.property.PropertyFormTableModel
getColumnCount() - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.DisjointClassesTableModel
getColumnCount() - Method in class edu.stanford.smi.protegex.owl.ui.clsproperties.RDFPropertiesTableModel
getColumnCount() - Method in class edu.stanford.smi.protegex.owl.ui.components.literaltable.LiteralTableModel
getColumnCount() - Method in class edu.stanford.smi.protegex.owl.ui.components.triples.TriplesTableModel
getColumnCount() - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTableModel
getColumnCount() - Method in class edu.stanford.smi.protegex.owl.ui.matrix.MatrixTableModel
getColumnCount() - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.imports.ImportsTableModel
getColumnCount() - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.imports.wizard.AddedPrefixesTableModel
getColumnCount() - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.prefixes.PrefixesTableModel
getColumnCount() - Method in class edu.stanford.smi.protegex.owl.ui.metrics.lang.DLExpressivityTableModel
getColumnCount() - Method in class edu.stanford.smi.protegex.owl.ui.owltable.AbstractOWLTableModel
getColumnCount() - Method in class edu.stanford.smi.protegex.owl.ui.properties.domain.OWLDomainTableModel
getColumnCount() - Method in class edu.stanford.smi.protegex.owl.ui.search.finder.ResultsViewModelFind
getColumnCount() - Method in class edu.stanford.smi.protegex.owl.ui.search.FindUsageTableModel
getColumnCount() - Method in class edu.stanford.smi.protegex.owl.ui.subsumption.ChangedClassesTableModel
getColumnCount() - Method in class edu.stanford.smi.protegex.owl.ui.testing.OWLTestResultsTableModel
getColumnCount() - Method in class edu.stanford.smi.protegex.owl.ui.testing.OWLTestSettingsTableModel
getColumnName(int) - Method in class edu.stanford.smi.protegex.owl.swrl.ui.table.SWRLTableModel
getColumnName(int) - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.DisjointClassesTableModel
getColumnName(int) - Method in class edu.stanford.smi.protegex.owl.ui.clsproperties.RDFPropertiesTableModel
getColumnName(int) - Method in class edu.stanford.smi.protegex.owl.ui.components.literaltable.LiteralTableModel
getColumnName(int) - Method in class edu.stanford.smi.protegex.owl.ui.components.triples.TriplesTableModel
getColumnName(int) - Method in class edu.stanford.smi.protegex.owl.ui.matrix.MatrixTableModel
getColumnName(int) - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.imports.ImportsTableModel
getColumnName(int) - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.imports.wizard.AddedPrefixesTableModel
getColumnName(int) - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.prefixes.PrefixesTableModel
getColumnName(int) - Method in class edu.stanford.smi.protegex.owl.ui.metrics.lang.DLExpressivityTableModel
getColumnName(int) - Method in class edu.stanford.smi.protegex.owl.ui.owltable.AbstractOWLTableModel
getColumnName(int) - Static method in class edu.stanford.smi.protegex.owl.ui.search.finder.FindResult
getColumnName(int) - Method in class edu.stanford.smi.protegex.owl.ui.search.finder.ResultsViewModelFind
getColumnName(int) - Method in class edu.stanford.smi.protegex.owl.ui.search.FindUsageTableModel
getColumnName(int) - Method in class edu.stanford.smi.protegex.owl.ui.subsumption.ChangedClassesTableModel
getColumnName(int) - Method in class edu.stanford.smi.protegex.owl.ui.testing.OWLTestResultsTableModel
getColumnName(int) - Method in class edu.stanford.smi.protegex.owl.ui.testing.OWLTestSettingsTableModel
getComboBox() - Method in class edu.stanford.smi.protegex.owl.ui.code.SymbolTextArea
getCommandManager() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not needed
getComments() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
getComments() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFIndividual
getComments() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
getComments(RDFResource) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
getComments() - Method in interface edu.stanford.smi.protegex.owl.model.RDFResource
  Gets all rdfs:comments for this resource.
getCommentText(RDFSClass) - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.AbstractOWLClassDisplay
getCommonBrowserSlot(OWLModel) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.OWLUI
getCommonSuperclass(Collection<RDFSNamedClass>) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
  Chooses a most specific common named superclass of a given collection of named classes.
getCommonSuperclass(Collection<RDFSNamedClass>) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Chooses a most specific common named superclass of a given collection of named classes.
getCommonSuperclasses(Collection<RDFSNamedClass>) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
  Gets the most specific common named superclasses of a given collection of named classes.
getCommonSuperclasses(Collection<RDFSNamedClass>) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets the most specific common named superclasses of a given collection of named classes.
getComparator() - Method in class edu.stanford.smi.protegex.owl.ui.cls.ClassTreeNode
getComparator() - Method in class edu.stanford.smi.protegex.owl.ui.cls.ClassTreeRoot
getComparator() - Method in class edu.stanford.smi.protegex.owl.ui.cls.ClassTreeWithBrowserTextNode
getComparator() - Method in class edu.stanford.smi.protegex.owl.ui.cls.ClassTreeWithBrowserTextRoot
getComparator() - Method in class edu.stanford.smi.protegex.owl.ui.cls.HiddenClassTreeRoot
getComparator() - Method in class edu.stanford.smi.protegex.owl.ui.existential.ExistentialTreeNode
getComparator() - Method in class edu.stanford.smi.protegex.owl.ui.existential.ExistentialTreeRoot
getComparator() - Method in class edu.stanford.smi.protegex.owl.ui.explorer.ExplorerTreeNode
getComparator() - Method in class edu.stanford.smi.protegex.owl.ui.explorer.ExplorerTreeRoot
getComparator() - Method in class edu.stanford.smi.protegex.owl.ui.importstree.ImportsTreeNode
getComparator() - Method in class edu.stanford.smi.protegex.owl.ui.importstree.ImportsTreeRoot
getComparator() - Method in class edu.stanford.smi.protegex.owl.ui.properties.OWLPropertySubpropertyRoot
getComparator() - Method in class edu.stanford.smi.protegex.owl.ui.subsumption.SubsumptionTreeNode
getComparator() - Method in class edu.stanford.smi.protegex.owl.ui.subsumption.SubsumptionTreeRoot
getComplement() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLComplementClass
getComplement() - Method in interface edu.stanford.smi.protegex.owl.model.OWLComplementClass
getComplementClassCount() - Method in class edu.stanford.smi.protegex.owl.model.util.ModelMetrics
getComponent() - Method in class edu.stanford.smi.protegex.owl.ui.actions.ResourceAction
getComponent() - Method in class edu.stanford.smi.protegex.owl.ui.properties.range.UnionRangeClassesComponent
getComponents() - Method in interface edu.stanford.smi.protegex.owl.ui.classform.form.drag.DragClient
getComputeIndividualsBelongingToClassIcon() - Static method in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
getComputeSingleInferredTypesIcon() - Static method in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
GetConceptIntersectionSuperclassesTask - Class in edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Oct 18, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
GetConceptIntersectionSuperclassesTask(OWLClass[], ProtegeOWLReasoner) - Constructor for class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.GetConceptIntersectionSuperclassesTask
getConcepts() - Method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DefaultDIGQueryResponse
getConcepts() - Method in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGQueryResponse
  If the query resulted in a concept set response type for example a query for super concepts then this method can be used to get the concepts.
GetConceptSatisfiableTask - Class in edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Aug 17, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
GetConceptSatisfiableTask(OWLClass, ProtegeOWLReasoner) - Constructor for class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.GetConceptSatisfiableTask
GetConceptSatisfiableTask - Class in edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Aug 17, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
GetConceptSatisfiableTask(OWLClass, ProtegeReasoner) - Constructor for class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.GetConceptSatisfiableTask
getConcreteDomainExpressionTagName(RDFSLiteral) - Method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DIGDataTypes
getConcreteSubclasses() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeCls
  Deprecated. not needed
getConditionsWidget() - Method in class edu.stanford.smi.protegex.owl.ui.cls.OWLClassesTab
getConfirmationThreshold(OWLModel) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.OWLUI
getConstraintsSlot() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getContent() - Method in class edu.stanford.smi.protegex.owl.ui.classform.component.FormComponent
getContentComponent() - Method in class edu.stanford.smi.protegex.owl.ui.wizard.OWLWizardPage
getContentWriter(OWLModel, TripleStore) - Method in class edu.stanford.smi.protegex.owl.writer.rdfxml.rdfwriter.OWLModelOrderedWriter
getContentWriter(OWLModel, TripleStore) - Method in class edu.stanford.smi.protegex.owl.writer.rdfxml.rdfwriter.OWLModelWriter
getCopy() - Method in class edu.stanford.smi.protegex.owl.model.util.ResourceCopier
  Returns the last copy of the last visited resource.
getCopyIcon() - Static method in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
getCoreSWRLBuiltIns() - Method in class edu.stanford.smi.protegex.owl.swrl.SWRLSystemFrames
getCreateAnnotationOWLDatatypePropertyAction() - Method in class edu.stanford.smi.protegex.owl.ui.properties.OWLSubpropertyPane
getCreateAnnotationOWLObjectPropertyAction() - Method in class edu.stanford.smi.protegex.owl.ui.properties.OWLSubpropertyPane
getCreateAnnotationPropertyAction() - Method in class edu.stanford.smi.protegex.owl.ui.properties.OWLSubpropertyPane
getCreateIcon(String) - Static method in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
getCreateIcon(String, int) - Static method in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
getCreateIcon(String, Class) - Static method in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
getCreateIcon(String, int, Class) - Static method in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
getCreateIndividualIcon(String) - Static method in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
getCreateOWLDatatypePropertyAction() - Method in class edu.stanford.smi.protegex.owl.ui.properties.OWLSubpropertyPane
getCreateOWLObjectPropertyAction() - Method in class edu.stanford.smi.protegex.owl.ui.properties.OWLSubpropertyPane
getCreatePropertyIcon(String) - Static method in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
getCreateRDFPropertyAction() - Method in class edu.stanford.smi.protegex.owl.ui.properties.OWLSubpropertyPane
getCreateRestrictionAction() - Method in class edu.stanford.smi.protegex.owl.ui.clsproperties.PropertyRestrictionsTree
getCreateSubpropertyAction() - Method in class edu.stanford.smi.protegex.owl.ui.properties.OWLSubpropertyPane
getCurrentBuffer() - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.dl.DLSyntaxBrowserTextGenerator
getCurrentConditionsWidget() - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsWidget
getCurrentUsers() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not needed
getCustomer() - Method in class edu.stanford.smi.protegex.owlx.examples.javaDemo.model.impl.DefaultPurchase
getCustomer() - Method in interface edu.stanford.smi.protegex.owlx.examples.javaDemo.model.Purchase
getCustomerClass() - Method in class edu.stanford.smi.protegex.owlx.examples.javaDemo.model.MyFactory
getCustomerProperty() - Method in class edu.stanford.smi.protegex.owlx.examples.javaDemo.model.impl.DefaultPurchase
getCustomerProperty() - Method in interface edu.stanford.smi.protegex.owlx.examples.javaDemo.model.Purchase
getCustomizedParent(Cls) - Method in class edu.stanford.smi.protegex.owl.ui.widget.OWLFormWidget
getCustomizedParent(Cls, Set) - Method in class edu.stanford.smi.protegex.owl.ui.widget.OWLFormWidget
getCustomProfileFeaturesClass(OntModel) - Static method in class edu.stanford.smi.protegex.owl.ui.profiles.ProfilesManager
getCustomProfileURI(OWLModel) - Static method in class edu.stanford.smi.protegex.owl.ui.profiles.ProfilesManager
getCutIcon() - Static method in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
getDatabaseFrameDbClass() - Method in class edu.stanford.smi.protegex.owl.database.OWLDatabaseWizardPage
getDataRange() - Method in class edu.stanford.smi.protegex.owl.swrl.model.impl.DefaultSWRLDataRangeAtom
getDataRange() - Method in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLDataRangeAtom
getDataRangeAtomCls() - Method in class edu.stanford.smi.protegex.owl.swrl.SWRLSystemFrames
getDataRangeProperty() - Method in class edu.stanford.smi.protegex.owl.swrl.SWRLSystemFrames
getDatatype() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFSLiteral
getDatatype() - Method in interface edu.stanford.smi.protegex.owl.model.RDFSLiteral
  Gets the RDFSDatatype of this value.
getDatatypeNameChecker() - Static method in class edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxParser
getDatatypeNameChecker() - Static method in class edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParser
getDataTypeProperties(OWLModel) - Method in class edu.stanford.smi.protegex.owl.inference.util.ReasonerUtil
getDatatypePropertyCount() - Method in class edu.stanford.smi.protegex.owl.model.util.ModelMetrics
getDatatypeQName(String) - Method in class edu.stanford.smi.protegex.owl.model.classparser.DatatypeNameChecker
getDataTypeRendering(RDFSLiteral) - Method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DIGDataTypes
  Gets the lexical rendering for the specified value
getDataValuedPropertyAtomCls() - Method in class edu.stanford.smi.protegex.owl.swrl.SWRLSystemFrames
getDatavaluedPropertyValue(OWLModel, String, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getDatavaluedPropertyValue(OWLModel, String, String, boolean) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getDatavaluedPropertyValue(OWLModel, OWLIndividual, String, boolean) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getDatavaluedPropertyValue(OWLModel, OWLIndividual, OWLProperty, boolean) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getDatavaluedPropertyValueAsBoolean(OWLModel, String, String, boolean) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getDatavaluedPropertyValueAsBoolean(OWLModel, String, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getDatavaluedPropertyValueAsBoolean(OWLModel, OWLIndividual, String, boolean) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getDatavaluedPropertyValueAsBoolean(OWLModel, OWLIndividual, OWLProperty, boolean) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getDatavaluedPropertyValueAsCollection(OWLModel, OWLIndividual, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getDatavaluedPropertyValueAsCollection(OWLModel, String, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getDatavaluedPropertyValueAsCollection(OWLModel, OWLIndividual, String, boolean) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getDatavaluedPropertyValueAsCollection(OWLModel, OWLIndividual, OWLProperty, boolean) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getDatavaluedPropertyValueAsInteger(OWLModel, String, String, boolean) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getDatavaluedPropertyValueAsInteger(OWLModel, String, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getDatavaluedPropertyValueAsLong(OWLModel, String, String, boolean) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getDatavaluedPropertyValueAsLong(OWLModel, OWLIndividual, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getDatavaluedPropertyValueAsLong(OWLModel, String, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getDatavaluedPropertyValueAsString(OWLModel, OWLIndividual, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getDatavaluedPropertyValueAsString(OWLModel, OWLIndividual, String, boolean) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getDatavaluedPropertyValueAsString(OWLModel, String, String, boolean, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getDatavaluedPropertyValueAsString(OWLModel, String, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getDatavaluedPropertyValueAsString(OWLModel, String, String, boolean) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getDatavaluedPropertyValueAsString(OWLModel, OWLIndividual, String, boolean, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getDatavaluedPropertyValueAsString(OWLModel, OWLIndividual, OWLProperty, boolean) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getDatavaluedPropertyValues(OWLModel, OWLIndividual, String, boolean) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getDatavaluedPropertyValues(OWLModel, String, String, boolean) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getDatavaluedPropertyValues(OWLModel, String, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getDatavaluedPropertyValues(OWLModel, URI, URI) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getDate(String) - Static method in class edu.stanford.smi.protegex.owl.model.impl.XMLSchemaDatatypes
getDate() - Method in class edu.stanford.smi.protegex.owl.ui.widget.OWLDateWidget
getDate(String) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.OWLDateWidget
getDate() - Method in class edu.stanford.smi.protegex.owlx.examples.javaDemo.model.impl.DefaultPurchase
getDate() - Method in interface edu.stanford.smi.protegex.owlx.examples.javaDemo.model.Purchase
getDateProperty() - Method in class edu.stanford.smi.protegex.owlx.examples.javaDemo.model.impl.DefaultPurchase
getDateProperty() - Method in interface edu.stanford.smi.protegex.owlx.examples.javaDemo.model.Purchase
getDateString(Date) - Static method in class edu.stanford.smi.protegex.owl.model.impl.XMLSchemaDatatypes
getDateTimeString(Date) - Static method in class edu.stanford.smi.protegex.owl.model.impl.XMLSchemaDatatypes
getDBPropertyIndex(DatabaseProperty) - Static method in class edu.stanford.smi.protegex.owl.repository.impl.DatabaseRepository
getDBTable(URI) - Method in class edu.stanford.smi.protegex.owl.repository.impl.DatabaseRepository
getDefaultAlias(ValueType) - Static method in class edu.stanford.smi.protegex.owl.model.impl.XMLSchemaDatatypes
getDefaultAnnotationProperties() - Method in class edu.stanford.smi.protegex.owl.ui.components.annotations.DefaultAnnotations
getDefaultAnnotationPropertiesInView() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getDefaultBrowserSlot(OWLModel) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.OWLUI
getDefaultCellEditorIcon(RDFResource) - Method in class edu.stanford.smi.protegex.owl.swrl.ui.table.SWRLTable
getDefaultCellEditorIcon(RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.owltable.SymbolTable
getDefaultClassView() - Static method in class edu.stanford.smi.protegex.owl.ui.cls.SwitchClassDefinitionResourceDisplayPlugin
getDefaultClsMetaCls() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
getDefaultDatatypes(OWLModel) - Static method in class edu.stanford.smi.protegex.owl.model.util.XSDVisibility
getDefaultDateTimeValue() - Static method in class edu.stanford.smi.protegex.owl.model.impl.XMLSchemaDatatypes
getDefaultDateValue() - Static method in class edu.stanford.smi.protegex.owl.model.impl.XMLSchemaDatatypes
getDefaultDIGReasonerClass() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.ReasonerManager
getDefaultDisplay() - Static method in class edu.stanford.smi.protegex.owl.model.classdisplay.OWLClassDisplayFactory
getDefaultFacetMetaCls() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not supported in OWL
getDefaultJenaOntology(String, OntModel) - Static method in class edu.stanford.smi.protegex.owl.jena.Jena
getDefaultLanguage() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getDefaultLanguage() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets the default language specified by the user through an annotation property at owl:Ontology.
getDefaultLanguageProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getDefaultLanguageSlotName() - Static method in class edu.stanford.smi.protegex.owl.model.ProtegeNames
getDefaultNamespace() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractNamespaceManager
getDefaultNamespace() - Method in class edu.stanford.smi.protegex.owl.model.impl.UnmodifiableNamespaceManager
getDefaultNamespace() - Method in interface edu.stanford.smi.protegex.owl.model.NamespaceMap
getDefaultNamespace() - Method in class edu.stanford.smi.protegex.owl.model.triplestore.impl.TripleStoreImpl
getDefaultNamespace() - Method in class edu.stanford.smi.protegex.owl.repository.util.XMLBaseExtractor
getDefaultNamespace() - Method in class edu.stanford.smi.protegex.owl.writer.xml.DefaultXMLWriter
getDefaultNamespace() - Method in interface edu.stanford.smi.protegex.owl.writer.xml.XMLWriter
  Gets the default namespace that the rdfwriter uses.
getDefaultNamespace() - Method in class edu.stanford.smi.protegex.owl.writer.xml.XMLWriterNamespaceManager
getDefaultNamespaceField() - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.prefixes.PrefixesPanel
getDefaultOWLOntology() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getDefaultOWLOntology() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
getDefaultProfileOntModel() - Static method in class edu.stanford.smi.protegex.owl.ui.profiles.ProfilesManager
getDefaultProfileURI() - Static method in class edu.stanford.smi.protegex.owl.ui.profiles.ProfilesManager
getDefaultProperties() - Method in class edu.stanford.smi.protegex.owl.ui.components.annotations.AnnotationsTableModel
getDefaultProperties() - Method in class edu.stanford.smi.protegex.owl.ui.components.triples.TriplesTableModel
getDefaultReadOnlyIcon(ImageIcon, String, int, int, int) - Static method in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
getDefaultReasonerClass() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.ReasonerManager
getDefaultReasonerClassName() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.ReasonerManager
getDefaultReasonerURL() - Method in class edu.stanford.smi.protegex.owl.inference.util.ReasonerPreferences
  Gets the Default URL for the extenal DIG Reasoner
getDefaultRestrictionMetaCls(KnowledgeBase) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.WidgetUtilities
getDefaultSlotMetaCls() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
getDefaultTimeValue() - Static method in class edu.stanford.smi.protegex.owl.model.impl.XMLSchemaDatatypes
getDefaultValue() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFSDatatype
getDefaultValue() - Method in interface edu.stanford.smi.protegex.owl.model.RDFSDatatype
  Creates a default value for this datatype (e.g.
getDefaultValues(Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not supported in OWL
getDefaultValues() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeSlot
  Deprecated. no OWL equivalent
getDefaultWidgetClassName(Cls, Slot, Facet) - Method in class edu.stanford.smi.protegex.owl.ui.widget.OWLWidgetMapper
getDefaultWidgetClassName(Cls, Slot, Facet, boolean) - Method in class edu.stanford.smi.protegex.owl.ui.widget.OWLWidgetMapper
getDefaultXSDDatatype(ValueType) - Static method in class edu.stanford.smi.protegex.owl.model.impl.XMLSchemaDatatypes
getDefinedClassCount() - Method in class edu.stanford.smi.protegex.owl.model.util.ModelMetrics
getDefinedClsIcon() - Static method in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
  Deprecated. please access constant directly
getDefinition() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
getDefinition() - Method in interface edu.stanford.smi.protegex.owl.model.OWLNamedClass
  Gets the first equivalent class of this, or null if none is equivalent.
getDefinition() - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTableItem
getDefinition(int) - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTableModel
  If a given row displays an operand from an equivalent class intersection, then this method returns the OWLIntersectionClass hosting it.
getDelegate() - Method in class edu.stanford.smi.protegex.owl.model.triplestore.DelegatingTripleWriter
getDeleteClsAction() - Method in class edu.stanford.smi.protegex.owl.ui.cls.AssertedClassesPanel
getDeleteClsIcon() - Static method in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
getDeleteIcon() - Static method in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
getDeleteIcon(String) - Static method in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
getDeleteIcon(String, Class) - Static method in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
getDeletePropertyAction() - Method in class edu.stanford.smi.protegex.owl.ui.properties.OWLSubpropertyPane
getDeleteRestrictionAction() - Method in class edu.stanford.smi.protegex.owl.ui.clsproperties.PropertyRestrictionsTree
getDependingClasses() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLAnonymousClass
getDependingClasses() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLCardinalityBase
getDependingClasses() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLLogicalClass
getDependingClasses() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLQuantifierRestriction
getDependingClasses() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFSNamedClass
getDependingClasses() - Method in interface edu.stanford.smi.protegex.owl.model.RDFSClass
  Gets all OWLAnonymousClasses the life cycle of which depends on this.
getDeprecatedIcon() - Static method in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
getDescendantClasses(OWLClass, ReasonerTaskListener) - Method in class edu.stanford.smi.protegex.owl.inference.dig.DefaultProtegeDIGReasoner
getDescendantClasses(OWLClass) - Method in class edu.stanford.smi.protegex.owl.inference.dig.DefaultProtegeDIGReasoner
getDescendantClasses(OWLClass, ReasonerTaskListener) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.DefaultProtegeOWLReasoner
getDescendantClasses(OWLClass, ReasonerTaskListener) - Method in interface edu.stanford.smi.protegex.owl.inference.protegeowl.ProtegeOWLReasoner
  Deprecated. Gets the inferred descendant classes of the specified class.
getDescendantClasses(OWLClass) - Method in class edu.stanford.smi.protegex.owl.inference.reasoner.AbstractProtegeReasoner
getDescendantClasses(OWLClass) - Method in interface edu.stanford.smi.protegex.owl.inference.reasoner.ProtegeReasoner
  Gets the inferred descendant classes of the specified class.
GetDescendantConceptsTask - Class in edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Aug 17, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
GetDescendantConceptsTask(OWLClass, ProtegeOWLReasoner) - Constructor for class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.GetDescendantConceptsTask
GetDescendantConceptsTask - Class in edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Aug 17, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
GetDescendantConceptsTask(OWLClass, ProtegeReasoner) - Constructor for class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.GetDescendantConceptsTask
getDescendantProperties(OWLProperty) - Method in class edu.stanford.smi.protegex.owl.inference.reasoner.AbstractProtegeReasoner
getDescendantProperties(OWLProperty) - Method in interface edu.stanford.smi.protegex.owl.inference.reasoner.ProtegeReasoner
getDescription() - Method in class edu.stanford.smi.protegex.owl.database.OWLDatabaseKnowledgeBaseFactory
getDescription() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.AbstractReasonerTask
getDescription() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.AbstractReasonerTask
getDescription() - Method in interface edu.stanford.smi.protegex.owl.inference.protegeowl.task.ReasonerTask
  Gets a high level description of the task.
getDescription() - Method in class edu.stanford.smi.protegex.owl.jena.CreateOWLProjectFromFilePlugin
getDescription() - Method in class edu.stanford.smi.protegex.owl.jena.JenaKnowledgeBaseFactory
getDescription() - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.manchester.AbstractNamedObjectCreationSuggestion
getDescription() - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.manchester.CreateSubClassSuggestion
getDescription() - Method in interface edu.stanford.smi.protegex.owl.ui.clsdesc.manchester.Suggestion
getDescription() - Method in class edu.stanford.smi.protegex.owl.ui.repository.wizard.impl.DatabaseRepositoryCreatorWizardPlugin
getDescription() - Method in class edu.stanford.smi.protegex.owl.ui.repository.wizard.impl.HTTPRepositoryCreatorWizardPlugin
getDescription() - Method in class edu.stanford.smi.protegex.owl.ui.repository.wizard.impl.LocalFileRepositoryCreatorWizardPlugin
getDescription() - Method in class edu.stanford.smi.protegex.owl.ui.repository.wizard.impl.LocalFolderRepositoryCreatorWizardPlugin
getDescription() - Method in class edu.stanford.smi.protegex.owl.ui.repository.wizard.impl.RelativeFileRepositoryCreatorWizardPlugin
getDescription() - Method in class edu.stanford.smi.protegex.owl.ui.repository.wizard.impl.RelativeFolderRepositoryCreatorWizardPlugin
getDescription() - Method in interface edu.stanford.smi.protegex.owl.ui.repository.wizard.RepositoryCreatorWizardPlugin
getDescription() - Method in class edu.stanford.smi.protegex.owl.ui.search.finder.BasicFind
getDescription() - Method in class edu.stanford.smi.protegex.owl.ui.search.finder.DefaultClassFind
getDescription() - Method in class edu.stanford.smi.protegex.owl.ui.search.finder.DefaultIndividualFind
getDescription() - Method in class edu.stanford.smi.protegex.owl.ui.search.finder.DefaultPropertyFind
getDescription() - Method in interface edu.stanford.smi.protegex.owl.ui.search.finder.Find
getDescription() - Method in class edu.stanford.smi.protegex.owl.ui.search.finder.HiddenClassFind
getDifference() - Method in class edu.stanford.smi.protegex.owl.inference.util.TimeDifference
getDifferentFrom() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
getDifferentFrom() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFIndividual
getDifferentFrom() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
getDifferentFrom(RDFResource) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
getDifferentFrom() - Method in interface edu.stanford.smi.protegex.owl.model.RDFResource
  Gets all owl:differentFroms for this resource.
getDifferentFromIcon() - Static method in class edu.stanford.smi.protegex.owl.swrl.ui.icons.SWRLIcons
getDifferentIndividualsAtomCls() - Method in class edu.stanford.smi.protegex.owl.swrl.SWRLSystemFrames
getDIGError(int) - Method in exception edu.stanford.smi.protegex.owl.inference.dig.exception.DIGErrorException
  Gets the `DIGError` object associated with this exception.
getDIGQueryResponseIterator(OWLModel, Document) - Method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DefaultDIGTranslator
getDIGQueryResponseIterator(OWLModel, Document) - Method in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGTranslator
  Returns an iterator that can be used to traverse the responses to multiple queries.
getDIGReasoner() - Method in class edu.stanford.smi.protegex.owl.inference.dig.DefaultProtegeDIGReasoner
  Gets the DIGReasoner that this reasoner uses to talk to the external DIG Reasoner Process
getDIGReasoner() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.DefaultProtegeOWLReasoner
  Gets the DIGReasoner that this reasoner uses to talk to the external DIG Reasoner Process
getDIGReasoner() - Method in interface edu.stanford.smi.protegex.owl.inference.protegeowl.ProtegeOWLReasoner
  Deprecated. Gets the DIGReasoner that this reasoner uses to talk to the external DIG Reasoner Process
getDirectBrowserSlotPattern() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeCls
getDirectBrowserSlotPattern(Cls) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
getDirectContainingRestrictions(OWLNamedClass) - Static method in class edu.stanford.smi.protegex.owl.util.ExpressionInfoUtils
getDirectDomain(Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
getDirectDomain() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeSlot
  Deprecated.
getDirectedBinaryRelationCls() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getDirectExistentialRelation(OWLNamedClass, OWLObjectProperty, OWLNamedClass) - Static method in class edu.stanford.smi.protegex.owl.ui.existential.Existential
  Deprecated.
getDirectInstanceCount() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeCls
  Deprecated.
getDirectInstanceCount(Cls) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
getDirectInstances() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeCls
  Deprecated.
getDirectInstances(Cls) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
getDirectlyOverriddenTemplateFacets(Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeCls
  Deprecated. no OWL equivalent
getDirectlyOverriddenTemplateFacets(Cls, Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not supported in OWL
getDirectlyOverriddenTemplateSlots(Cls) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not supported in OWL
getDirectNamedClass() - Method in class edu.stanford.smi.protegex.owl.util.ExpressionInfo
getDirectOWLDomainClasses(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getDirectOWLDomainClasses(OWLModel, URI) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getDirectOWLDomainClasses(OWLModel, String, boolean) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getDirectOwnSlotValue(Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeInstance
  Deprecated.
getDirectOwnSlotValue(Frame, Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
getDirectOwnSlotValues(Frame, Slot) - Method in class edu.stanford.smi.protegex.owl.model.framestore.LocalClassificationFrameStore
getDirectOwnSlotValues(Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeInstance
  Deprecated.
getDirectOwnSlotValues(Frame, Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
getDirectOwnSlotValuesClosure(Frame, Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not needed
getDirectOwnSlotValuesCount(Frame, Slot) - Method in class edu.stanford.smi.protegex.owl.model.framestore.LocalClassificationFrameStore
getDirectRDFType(RDFResource) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
getDirectRDFTypes(RDFResource) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
getDirectRestriction(Cls, Slot, Class) - Method in class edu.stanford.smi.protegex.owl.model.framestore.updater.AbstractRestrictionUpdater
getDirectRestrictions(Cls, Slot, Class<? extends X>) - Method in class edu.stanford.smi.protegex.owl.model.framestore.updater.AbstractRestrictionUpdater
getDirectRestrictions() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLNamedClass
getDirectRestrictions() - Method in interface edu.stanford.smi.protegex.owl.model.OWLNamedClass
  Deprecated. will be deleted shortly, replaced with getRestrictions(false)
getDirectSubclassCount() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeCls
  Deprecated.
getDirectSubclassCount(Cls) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
getDirectSubClasses(OntClass) - Static method in class edu.stanford.smi.protegex.owl.jena.Jena
  Gets the direct subclasses of a given OntClass, excluding the class itself which is usually delivered by Jena.
getDirectSubclasses() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeCls
  Deprecated.
getDirectSubclasses(Cls) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
getDirectSubClassesOf(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getDirectSubClassesOf(OWLModel, URI) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getDirectSubClassesOf(OWLNamedClass) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getDirectSubPropertiesOf(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getDirectSubPropertiesOf(OWLModel, URI) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getDirectSubPropertiesOf(OWLProperty) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getDirectSubslotCount(Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
getDirectSubslotCount() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeSlot
  Deprecated.
getDirectSubslots(Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
getDirectSubslots() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeSlot
  Deprecated.
getDirectSuperclassCount() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeCls
  Deprecated.
getDirectSuperclassCount(Cls) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
getDirectSuperClasses(OntClass) - Static method in class edu.stanford.smi.protegex.owl.jena.Jena
  Gets the direct superclasses of a given OntClass, excluding the class itself which is usually delivered by Jena.
getDirectSuperclasses() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeCls
  Deprecated.
getDirectSuperclasses(Cls) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
getDirectSuperClassesOf(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getDirectSuperClassesOf(OWLModel, URI) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getDirectSuperClassesOf(OWLNamedClass) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getDirectSuperPropertiesOf(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getDirectSuperPropertiesOf(OWLModel, URI) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getDirectSuperPropertiesOf(OWLProperty) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getDirectSuperslotCount(Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
getDirectSuperslotCount() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeSlot
  Deprecated.
getDirectSuperslots(Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
getDirectSuperslots() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeSlot
  Deprecated.
getDirectSuperslotsSlot() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getDirectTemplateFacetValue(Slot, Facet) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
getDirectTemplateFacetValues(Slot, Facet) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeCls
  Deprecated. no OWL equivalent
getDirectTemplateFacetValues(Cls, Slot, Facet) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not supported in OWL
getDirectTemplateSlots() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeCls
  Deprecated.
getDirectTemplateSlots(Cls) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
getDirectTemplateSlotValues(Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeCls
  Deprecated. no OWL equivalent
getDirectTemplateSlotValues(Cls, Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not supported in OWL
getDirectType() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeInstance
  Deprecated.
getDirectType(Instance) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
getDirectTypes(Instance) - Static method in class edu.stanford.smi.protegex.owl.jena.parser.FrameCreatorUtility
getDirectTypes() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeInstance
  Deprecated.
getDirectTypes(Instance) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
getDisjointClasses() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
getDisjointClasses() - Method in interface edu.stanford.smi.protegex.owl.model.OWLClass
  Gets the disjoint classes of this.
getDisjointClassesWidget() - Method in class edu.stanford.smi.protegex.owl.ui.cls.OWLClassesTab
getDispatchEventsEnabled() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
getDisplay(Class) - Static method in class edu.stanford.smi.protegex.owl.model.classdisplay.OWLClassDisplayFactory
getDisplayChangedClassesIcon() - Static method in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
getDisplayedComponent() - Method in class edu.stanford.smi.protegex.owl.ui.cls.AssertedClassesPanel
getDisplayErrorMessage(Throwable) - Method in class edu.stanford.smi.protegex.owl.swrl.ui.code.SWRLSymbolPanel
getDisplayErrorMessage(Throwable) - Method in class edu.stanford.smi.protegex.owl.ui.code.OWLSymbolPanel
getDisplayErrorMessage(Throwable) - Method in class edu.stanford.smi.protegex.owl.ui.code.SymbolPanel
getDisplayParent() - Method in class edu.stanford.smi.protegex.owl.ui.existential.ExistentialTreePanel
getDisplayParent() - Method in class edu.stanford.smi.protegex.owl.ui.explorer.ExplorerTreePanel
getDisplayParent() - Method in class edu.stanford.smi.protegex.owl.ui.properties.OWLSubpropertyPane
getDisplayParent() - Method in class edu.stanford.smi.protegex.owl.ui.subsumption.SubsumptionTreePanel
getDisplayRestrictions() - Method in class edu.stanford.smi.protegex.owl.ui.clsproperties.PropertyRestrictionsTreeWidget
getDisplaySlotNotSetString(Instance) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getDisplaySlotPatternValueNotSetString(Instance, BrowserSlotPattern) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getDisplayString(String) - Static method in class edu.stanford.smi.protegex.owl.ui.code.OWLTextFormatter
getDisplayTabClassNames(RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.testing.OWLTestResultsPanel
  Gets a list of tabs that could be used to display a given instance.
getDisplayText(RDFSClass) - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.AbstractOWLClassDisplay
getDisplayText(RDFSClass) - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.dl.DLSyntaxClassDisplay
getDisplayText(RDFSClass) - Method in interface edu.stanford.smi.protegex.owl.model.classdisplay.OWLClassDisplay
  Gets the display text for a given class expression.
getDisplayTextOfOWLComplementClass(OWLComplementClass) - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.AbstractOWLClassDisplay
getDisplayTextOfOWLEnumeratedClass(OWLEnumeratedClass) - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.AbstractOWLClassDisplay
getDisplayTextOfOWLNAryLogicalClass(OWLNAryLogicalClass) - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.AbstractOWLClassDisplay
getDisplayTextOfOWLRestriction(OWLRestriction) - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.AbstractOWLClassDisplay
getDisplayTextOfOWLRestriction(OWLRestriction) - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.compact.CompactOWLClassDisplay
getDisplayValue(int) - Method in class edu.stanford.smi.protegex.owl.ui.components.triples.TriplesTableModel
getDistinctMembers() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLAllDifferent
getDistinctMembers() - Method in interface edu.stanford.smi.protegex.owl.model.OWLAllDifferent
getDL() - Method in class edu.stanford.smi.protegex.owl.model.util.DLExpressivityChecker
getDLName() - Method in class edu.stanford.smi.protegex.owl.model.util.DLExpressivityChecker
getDocumentation() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
getDocumentation() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFIndividual
getDocumentation() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
getDocumentation(Instance) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
getDocumentation() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeInstance
  Deprecated.
getDocumentation(Frame) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
getDocumentation() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeSlot
  Deprecated.
getDocumentation() - Method in class edu.stanford.smi.protegex.owl.testing.AbstractOWLTest
getDocumentation() - Method in interface edu.stanford.smi.protegex.owl.testing.OWLTest
  Gets a documentation text that describes the test.
getDocumentation() - Method in class edu.stanford.smi.protegex.owl.testing.style.MinCardiZeroTest
getDocumentation() - Method in class edu.stanford.smi.protegex.owl.testing.style.PrimitiveSubclassesDisjointTest
getDocumentation() - Method in class edu.stanford.smi.protegex.owl.testing.style.SingleAssertedSuperclassTest
getDocumentation() - Method in class edu.stanford.smi.protegex.owl.testing.style.SubclassesRestrictionDuplicatesThatOfSuperTest
getDocumentation() - Method in class edu.stanford.smi.protegex.owl.testing.todo.DeprecationOWLTest
getDocumentation() - Method in class edu.stanford.smi.protegex.owl.ui.repository.wizard.impl.RelativeFileURLSpecificationWizardPanel
getDocumentation() - Method in class edu.stanford.smi.protegex.owl.ui.repository.wizard.impl.RelativeURLSpecificationWizardPanel
getDomain(boolean) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
getDomain(Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
getDomain() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeSlot
  Deprecated.
getDomain(boolean) - Method in interface edu.stanford.smi.protegex.owl.model.RDFProperty
  Gets the first value of the rdfs:domain property.
getDomainlessProperties() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getDomainlessProperties() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets all properties that have owl:Thing as their domain.
getDomainProperties(OWLModel, String, boolean) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getDomainProperties(OWLModel, URI, boolean) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getDomains(boolean) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
getDomains(boolean) - Method in interface edu.stanford.smi.protegex.owl.model.RDFProperty
  Gets the values of the rdfs:domain property.
getDomainUpdateFrameStore() - Method in class edu.stanford.smi.protegex.owl.model.framestore.OWLFrameStoreManager
getDouble() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFSLiteral
getDouble() - Method in interface edu.stanford.smi.protegex.owl.model.RDFSLiteral
getDownIcon() - Static method in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
getDragComponent() - Method in class edu.stanford.smi.protegex.owl.ui.individuals.AssertedInstancesListPanel
getDraggableComponent(Point) - Method in interface edu.stanford.smi.protegex.owl.ui.classform.form.drag.DragClient
getDriver() - Method in class edu.stanford.smi.protegex.owl.database.CreateOWLDatabaseProjectPlugin
getDriver() - Method in class edu.stanford.smi.protegex.owl.database.creator.AbstractOwlDatabaseCreator
getDriver() - Method in interface edu.stanford.smi.protegex.owl.database.OWLDatabasePlugin
getDriver() - Method in class edu.stanford.smi.protegex.owl.repository.impl.DatabaseRepository
getDroolsIcon() - Static method in class edu.stanford.smi.protegex.owl.swrl.ui.icons.DroolsIcons
getDropComponent() - Method in class edu.stanford.smi.protegex.owl.ui.cls.AssertedClassesPanel
getDropComponent() - Method in class edu.stanford.smi.protegex.owl.ui.cls.OWLSubclassPane
getDropComponent() - Method in class edu.stanford.smi.protegex.owl.ui.individuals.IndividualsTabClassesPanel
getDropComponent() - Method in class edu.stanford.smi.protegex.owl.ui.properties.OWLSubpropertyPane
getDropRectangle(JComponent, Point) - Method in interface edu.stanford.smi.protegex.owl.ui.classform.form.drag.DragClient
getDuplicateValuesFrameStore() - Method in class edu.stanford.smi.protegex.owl.model.framestore.OWLFrameStoreManager
getEditedCls() - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.ClassDescriptionWidget
getEditedCls() - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.DisjointClassesTableModel
getEditedCls() - Method in class edu.stanford.smi.protegex.owl.ui.conditions.AbstractConditionsWidget
getEditedCls() - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTableModel
getEditedCls() - Method in class edu.stanford.smi.protegex.owl.ui.owltable.AbstractOWLTableModel
getEditedCls() - Method in class edu.stanford.smi.protegex.owl.ui.owltable.OWLTable
getEditedCls() - Method in interface edu.stanford.smi.protegex.owl.ui.owltable.OWLTableModel
getEditedResource() - Method in class edu.stanford.smi.protegex.owl.ui.widget.AbstractPropertyWidget
getEditedResource() - Method in class edu.stanford.smi.protegex.owl.ui.widget.MultiWidgetPropertyWidget
getEditedResource() - Method in interface edu.stanford.smi.protegex.owl.ui.widget.PropertyWidget
getEditHTMLIcon() - Static method in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
getEditor(Object) - Method in class edu.stanford.smi.protegex.owl.ui.components.AbstractPropertyValuesComponent
getEditor(Object) - Method in class edu.stanford.smi.protegex.owl.ui.components.literaltable.LiteralTableModel
getEditor(RDFResource, RDFProperty, Object) - Static method in class edu.stanford.smi.protegex.owl.ui.editors.PropertyValueEditorManager
getElementAt(int) - Method in class edu.stanford.smi.protegex.owl.ui.components.multiresource.MultiResourceListModel
getElementAt(int) - Method in class edu.stanford.smi.protegex.owl.ui.resourceselection.ResourceFilterListModel
getElementAt(int) - Method in class edu.stanford.smi.protegex.owl.ui.search.finder.ResultsViewModelFind
getEnabledImps() - Method in class edu.stanford.smi.protegex.owl.swrl.model.SWRLFactory
getEnabledImps(Set<String>) - Method in class edu.stanford.smi.protegex.owl.swrl.model.SWRLFactory
getEnabledImps(String) - Method in class edu.stanford.smi.protegex.owl.swrl.model.SWRLFactory
getEndColumn() - Method in class edu.stanford.smi.protegex.owl.model.classparser.compact.JavaCharStream
getEndColumn() - Method in class edu.stanford.smi.protegex.owl.model.classparser.dl.JavaCharStream
getEndColumn() - Method in class edu.stanford.smi.protegex.owl.model.classparser.manchester.JavaCharStream
getEndLine() - Method in class edu.stanford.smi.protegex.owl.model.classparser.compact.JavaCharStream
getEndLine() - Method in class edu.stanford.smi.protegex.owl.model.classparser.dl.JavaCharStream
getEndLine() - Method in class edu.stanford.smi.protegex.owl.model.classparser.manchester.JavaCharStream
getEnumeratedClassCount() - Method in class edu.stanford.smi.protegex.owl.model.util.ModelMetrics
getEnumeratedValues(Collection) - Method in class edu.stanford.smi.protegex.owl.ui.components.singleresource.SetResourceAction
getEquivalentClasses(OWLClass, ReasonerTaskListener) - Method in class edu.stanford.smi.protegex.owl.inference.dig.DefaultProtegeDIGReasoner
getEquivalentClasses(OWLClass) - Method in class edu.stanford.smi.protegex.owl.inference.dig.DefaultProtegeDIGReasoner
getEquivalentClasses(OWLClass, ReasonerTaskListener) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.DefaultProtegeOWLReasoner
getEquivalentClasses(OWLClass, ReasonerTaskListener) - Method in interface edu.stanford.smi.protegex.owl.inference.protegeowl.ProtegeOWLReasoner
  Deprecated. Gets the equivalent classes of the specified class.
getEquivalentClasses(OWLClass) - Method in class edu.stanford.smi.protegex.owl.inference.reasoner.AbstractProtegeReasoner
getEquivalentClasses(OWLClass) - Method in interface edu.stanford.smi.protegex.owl.inference.reasoner.ProtegeReasoner
  Gets the equivalent classes of the specified class.
getEquivalentClasses() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
getEquivalentClasses() - Method in interface edu.stanford.smi.protegex.owl.model.RDFSClass
  Gets a Collection of all directly equivalent Clses of this.
getEquivalentClassIcon() - Static method in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
GetEquivalentConceptsTask - Class in edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Aug 17, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
GetEquivalentConceptsTask(OWLClass, ProtegeOWLReasoner) - Constructor for class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.GetEquivalentConceptsTask
GetEquivalentConceptsTask - Class in edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Aug 17, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
GetEquivalentConceptsTask(OWLClass, ProtegeReasoner) - Constructor for class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.GetEquivalentConceptsTask
getEquivalentProperties() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
getEquivalentProperties() - Method in interface edu.stanford.smi.protegex.owl.model.RDFProperty
  Gets the equivalent slots of this.
getEquivalentPropertiesOf(OWLProperty) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getEquivalentPropertySlots() - Static method in class edu.stanford.smi.protegex.owl.jena.parser.OWLFramesMapping
getErrorCode() - Method in class edu.stanford.smi.protegex.owl.inference.dig.exception.DIGError
getErrorCode(int) - Method in exception edu.stanford.smi.protegex.owl.inference.dig.exception.DIGErrorException
  Gets the exception code associated with this DIGErrorException
getErrorDisplay() - Method in class edu.stanford.smi.protegex.owl.ui.code.SymbolEditorComponent
getErrorMessageIcon() - Static method in class edu.stanford.smi.protegex.owl.inference.ui.icons.InferenceIcons
getErrors() - Method in exception edu.stanford.smi.protegex.owl.inference.dig.exception.DIGErrorException
getErrors() - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.imports.wizard.AbstractImportEntry
getErrors() - Method in interface edu.stanford.smi.protegex.owl.ui.metadatatab.imports.wizard.ImportEntry
getErrorSymbolDisplay() - Method in class edu.stanford.smi.protegex.owl.ui.code.SymbolTextArea
getEventManager() - Method in class edu.stanford.smi.protegex.owl.jena.graph.ProtegeGraph
getExactKeyword() - Static method in class edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParserUtil
getExistentialDependents(OWLNamedClass, OWLObjectProperty) - Static method in class edu.stanford.smi.protegex.owl.ui.existential.Existential
  Deprecated. Computes the collection of all NamedClses which are related to cls through a direct someValuesFrom restriction for a given property.
getExistentialProperty() - Method in class edu.stanford.smi.protegex.owl.ui.existential.ExistentialTreePanel
getExplanation(String) - Static method in class edu.stanford.smi.protegex.owl.ui.metrics.lang.DLExpressivityExplanation
getExpression() - Method in class edu.stanford.smi.protegex.owl.util.ExpressionInfo
getExpressionRoot() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLAnonymousClass
getExpressionRoot() - Method in interface edu.stanford.smi.protegex.owl.model.OWLAnonymousClass
  This routine performs very slowly.
GetExpressionRootForAnonymousClassJob - Class in edu.stanford.smi.protegex.owl.model.impl
GetExpressionRootForAnonymousClassJob(KnowledgeBase, OWLAnonymousClass) - Constructor for class edu.stanford.smi.protegex.owl.model.impl.GetExpressionRootForAnonymousClassJob
getExtension(String) - Static method in class edu.stanford.smi.protegex.owl.jena.JenaKnowledgeBaseFactory
getExternalResourceIcon() - Static method in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
getFacet(String) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not supported in OWL
getFacetCount() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not supported in OWL
getFacets() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not supported in OWL
getFacetUpdateFrameStore() - Method in class edu.stanford.smi.protegex.owl.model.framestore.OWLFrameStoreManager
getFactories() - Method in class edu.stanford.smi.protegex.owl.repository.factory.RepositoryFactory
getFactory() - Method in class edu.stanford.smi.protegex.owl.jena.creator.OwlProjectFromUriCreator
getFactory() - Method in class edu.stanford.smi.protegex.owl.model.factory.AbstractOwlProjectCreator
getFactoryClassName() - Method in interface edu.stanford.smi.protegex.owl.javacode.JavaCodeGeneratorOptions
getFactoryClassName() - Method in class edu.stanford.smi.protegex.owl.javacode.ProjectBasedJavaCodeGeneratorOptions
getFbtIcon(FrameWithBrowserText) - Method in class edu.stanford.smi.protegex.owl.ui.ResourceRendererWithBrowserText
getFeaturesSet(String) - Static method in class edu.stanford.smi.protegex.owl.ui.profiles.ProfilesManager
getFile() - Method in class edu.stanford.smi.protegex.owl.repository.impl.AbstractLocalRepository
getFile() - Method in class edu.stanford.smi.protegex.owl.ui.repository.wizard.impl.FileBrowserPanel
getFileName() - Method in class edu.stanford.smi.protegex.owl.ui.jena.JenaSchemagenPanel
getFileURI(PropertyList, Project) - Method in class edu.stanford.smi.protegex.owl.jena.JenaKnowledgeBaseFactory
getFiller() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLQuantifierRestriction
getFiller() - Method in interface edu.stanford.smi.protegex.owl.model.OWLQuantifierRestriction
  Gets the filler of this restriction, which is either an RDFSDatatype, an OWLDataRange, or a RDFSClass.
getFillerProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLAllValuesFrom
getFillerProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLCardinality
getFillerProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLHasValue
getFillerProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLMaxCardinality
getFillerProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLMinCardinality
getFillerProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLSomeValuesFrom
getFillerProperty() - Method in interface edu.stanford.smi.protegex.owl.model.OWLRestriction
  Gets the Slot that is used to store the filler at this kind of restriction (e.g., owl:cardinality).
getFillers() - Method in class edu.stanford.smi.protegex.owl.ui.existential.ExistentialFillerProvider
getFillerText() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLCardinalityBase
getFillerText() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLQuantifierRestriction
getFillerText() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLHasValue
getFillerText() - Method in interface edu.stanford.smi.protegex.owl.model.OWLRestriction
  Gets the filler of this restriction for display purposes.
getFillerText() - Method in class edu.stanford.smi.protegex.owl.ui.clsproperties.NewRestrictionTreeNode
getFillerText() - Method in class edu.stanford.smi.protegex.owl.ui.clsproperties.OldRestrictionTreeNode
getFillerText() - Method in class edu.stanford.smi.protegex.owl.ui.clsproperties.RestrictionTreeNode
getFind() - Method in class edu.stanford.smi.protegex.owl.ui.search.finder.ResultsViewModelFind
getFinder() - Method in class edu.stanford.smi.protegex.owl.ui.cls.OWLSubclassPane
getFindStatus() - Method in class edu.stanford.smi.protegex.owl.ui.search.finder.BasicFind
getFindStatus() - Method in interface edu.stanford.smi.protegex.owl.ui.search.finder.Find
getFindUsageIcon() - Static method in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
getFirst() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFList
getFirst() - Method in interface edu.stanford.smi.protegex.owl.model.RDFList
getFirst(Instance) - Method in class edu.stanford.smi.protegex.owl.ui.components.rdflist.RDFListComponent
getFirstLiteral() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFList
getFirstLiteral() - Method in interface edu.stanford.smi.protegex.owl.model.RDFList
  Gets the rdf:first value of this as an RDFSLiteral.
getFirstName() - Method in interface edu.stanford.smi.protegex.owlx.examples.javaDemo.model.Customer_
getFirstName() - Method in class edu.stanford.smi.protegex.owlx.examples.javaDemo.model.impl.DefaultCustomer_
getFirstNameProperty() - Method in interface edu.stanford.smi.protegex.owlx.examples.javaDemo.model.Customer_
getFirstNameProperty() - Method in class edu.stanford.smi.protegex.owlx.examples.javaDemo.model.impl.DefaultCustomer_
getFirstProperty() - Method in class edu.stanford.smi.protegex.owl.ui.components.rdflist.RDFListComponent
getFirstSuperclass() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFSNamedClass
getFirstSuperclass() - Method in interface edu.stanford.smi.protegex.owl.model.RDFSNamedClass
  A convenience method to get the first direct superclass of this.
getFirstSuperproperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
getFirstSuperproperty() - Method in interface edu.stanford.smi.protegex.owl.model.RDFProperty
  Gets the first superproperty of this (if any exists).
getFirstTriple() - Method in class edu.stanford.smi.protegex.owl.model.triplestore.TriplePath
getFloat() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFSLiteral
getFloat() - Method in interface edu.stanford.smi.protegex.owl.model.RDFSLiteral
getFloatDatatypes() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getFloatDatatypes() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getFloatDatatypes() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets all float XML Schema datatypes, including xsd:float etc.
getFormsFileURI(TripleStore, OWLModel) - Static method in class edu.stanford.smi.protegex.owl.ui.forms.AbsoluteFormsGenerator
getForwardAction() - Method in class edu.stanford.smi.protegex.owl.ui.navigation.NavigationHistoryManager
getFrame(String) - Method in class edu.stanford.smi.protegex.owl.jena.parser.AbstractStatefulTripleProcessor
getFrame(String) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
getFrame(FrameID) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not needed
getFrameByName(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.model.classparser.ParserUtils
getFrameCount() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
getFrameCounts() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not needed
getFrameCreationTimestamp(Frame) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not needed
getFrameCreator(Frame) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not needed
getFrameFactory() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
getFrameLastModificationTimestamp(Frame) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not needed
getFrameLastModifier(Frame) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not needed
getFrameListener() - Method in class edu.stanford.smi.protegex.owl.ui.importstree.ImportsTreeNode
getFrameNameForURI(String, boolean) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
  Deprecated.
getFrameNameMatches(String, int) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
getFrameNamePrefix() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not supported in OWL
getFrames() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
getFramesInvSlotMapName(String) - Static method in class edu.stanford.smi.protegex.owl.jena.parser.OWLFramesMapping
getFramesSlotMapName(String) - Static method in class edu.stanford.smi.protegex.owl.jena.parser.OWLFramesMapping
getFrameStoreManager() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getFrameStoreManager() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
getFrameStores() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. internal Protege detail
getFrameStores() - Method in class edu.stanford.smi.protegex.owl.server.triplestore.Package
getFramesWithDirectOwnSlotValue(Slot, Object) - Method in class edu.stanford.smi.protegex.owl.model.framestore.LocalClassificationFrameStore
getFramesWithMatchingDirectOwnSlotValue(Slot, String, int) - Method in class edu.stanford.smi.protegex.owl.model.framestore.LocalClassificationFrameStore
getFramesWithMatchingDirectOwnSlotValue(Slot, String, int) - Method in class edu.stanford.smi.protegex.owl.model.framestore.OWLFrameStore
getFramesWithValue(Slot, Facet, boolean, Object) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
getFramesWithWrongJavaType() - Method in class edu.stanford.smi.protegex.owl.jena.parser.GlobalParserCache
getFrameTypeId(Class<? extends Instance>) - Static method in class edu.stanford.smi.protegex.owl.model.factory.FrameTypeId2OWLJavaClass
getFrameTypeId() - Method in enum edu.stanford.smi.protegex.owl.swrl.model.factory.SWRLFrameTypeId
getFromExistingSources() - Method in class edu.stanford.smi.protegex.owl.database.OWLDatabaseWizardPage
getFromExistingSources() - Method in class edu.stanford.smi.protegex.owl.database.OWLDatabaseWizardPageExistingSources
getFromSlot() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getFullName(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.model.NamespaceUtil
getFullNameFromName(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getFullText() - Method in class edu.stanford.smi.protegex.owl.ui.widget.HTMLEditorPanel
getGciAxioms() - Method in class edu.stanford.smi.protegex.owl.jena.parser.GlobalParserCache
getGenerateEventsEnabled() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
getGlobalParserCache() - Method in class edu.stanford.smi.protegex.owl.jena.parser.TripleProcessor
getGlobalParserCache() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getGlobalRepositories() - Method in class edu.stanford.smi.protegex.owl.repository.RepositoryManager
getGoodCustomerClass() - Method in class edu.stanford.smi.protegex.owlx.examples.javaDemo.model.MyFactory
getGrayedIcon() - Method in class edu.stanford.smi.protegex.owl.ui.icons.OverlayIcon
getGroup() - Method in class edu.stanford.smi.protegex.owl.testing.AbstractOWLTest
getGroup() - Method in interface edu.stanford.smi.protegex.owl.testing.OWLTest
getGroup() - Method in class edu.stanford.smi.protegex.owl.testing.style.MinCardiZeroTest
getGroup() - Method in class edu.stanford.smi.protegex.owl.testing.style.PrimitiveSubclassesDisjointTest
getGroup() - Method in class edu.stanford.smi.protegex.owl.testing.style.SingleAssertedSuperclassTest
getGroup() - Method in class edu.stanford.smi.protegex.owl.testing.style.SubclassesRestrictionDuplicatesThatOfSuperTest
getGroup() - Method in class edu.stanford.smi.protegex.owl.testing.todo.DeprecationOWLTest
getGroup() - Method in class edu.stanford.smi.protegex.owl.ui.actions.ResourceAction
getGroup() - Method in class edu.stanford.smi.protegex.owl.ui.actions.triple.AbstractTripleAction
getGroup() - Method in interface edu.stanford.smi.protegex.owl.ui.actions.triple.TripleAction
  Gets an (optional) group name, allowing tools to display action items in groups.
getHasKeyword() - Static method in class edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParserUtil
getHasValue() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLHasValue
getHasValue(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLNamedClass
getHasValue() - Method in interface edu.stanford.smi.protegex.owl.model.OWLHasValue
  Gets the owl:hasValue value of this restriction.
getHasValue(RDFProperty) - Method in interface edu.stanford.smi.protegex.owl.model.OWLNamedClass
  Gets the value of an arbitrary owl:hasValue restriction defined on this class.
getHasValueCount() - Method in class edu.stanford.smi.protegex.owl.model.util.ModelMetrics
getHasValues(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLNamedClass
getHasValues(RDFProperty) - Method in interface edu.stanford.smi.protegex.owl.model.OWLNamedClass
  Gets a collection of values for all owl:hasValue restrictions defined on this class.
getHasValuesOnTypes(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
getHasValuesOnTypes(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFIndividual
getHasValuesOnTypes(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
getHasValuesOnTypes(RDFResource, RDFProperty) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
getHasValuesOnTypes(RDFProperty) - Method in interface edu.stanford.smi.protegex.owl.model.RDFResource
  Checks if there are any owl:hasValue restrictions defined on any rdf:type of this and returns the fillers of the restrictions (if found).
getHead() - Method in class edu.stanford.smi.protegex.owl.swrl.model.impl.DefaultSWRLImp
getHead() - Method in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLImp
getHeadBuiltInNames() - Static method in class edu.stanford.smi.protegex.owl.swrl.model.SQWRLNames
getHeaderComponent() - Method in class edu.stanford.smi.protegex.owl.ui.cls.AssertedClassesPanel
getHeaderComponent() - Method in interface edu.stanford.smi.protegex.owl.ui.cls.Hierarchy
getHeaderComponent() - Method in class edu.stanford.smi.protegex.owl.ui.existential.ExistentialTreePanel
getHeaderComponent() - Method in class edu.stanford.smi.protegex.owl.ui.explorer.ExplorerTreePanel
getHeaderComponent() - Method in class edu.stanford.smi.protegex.owl.ui.subsumption.SubsumptionTreePanel
getHeaderIcon() - Method in class edu.stanford.smi.protegex.owl.ui.properties.OWLAnnotationPropertySubpropertyPane
getHeaderIcon() - Method in class edu.stanford.smi.protegex.owl.ui.properties.OWLDatatypePropertySubpropertyPane
getHeaderIcon() - Method in class edu.stanford.smi.protegex.owl.ui.properties.OWLObjectPropertySubpropertyPane
getHeaderIcon() - Method in class edu.stanford.smi.protegex.owl.ui.properties.OWLSubpropertyPane
getHeaderLabel() - Method in class edu.stanford.smi.protegex.owl.ui.properties.OWLAnnotationPropertySubpropertyPane
getHeaderLabel() - Method in class edu.stanford.smi.protegex.owl.ui.properties.OWLDatatypePropertySubpropertyPane
getHeaderLabel() - Method in class edu.stanford.smi.protegex.owl.ui.properties.OWLObjectPropertySubpropertyPane
getHeaderLabel() - Method in class edu.stanford.smi.protegex.owl.ui.properties.OWLSubpropertyPane
getHeadFrameStore() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Provides low level access to some internal Protege detail - normally not needed.
getHeadOfExpression() - Method in class edu.stanford.smi.protegex.owl.util.ExpressionInfo
getHeadProperty() - Method in class edu.stanford.smi.protegex.owl.swrl.SWRLSystemFrames
getHeadSelectionBuiltInNames() - Static method in class edu.stanford.smi.protegex.owl.swrl.model.SQWRLNames
getHeadSlicingBuiltInNames() - Static method in class edu.stanford.smi.protegex.owl.swrl.model.SQWRLNames
getHierarchiesPanel() - Method in class edu.stanford.smi.protegex.owl.ui.cls.OWLClassesTab
getHierarchy() - Method in class edu.stanford.smi.protegex.owl.ui.cls.HierarchyPanel
getHierarchyManager() - Method in class edu.stanford.smi.protegex.owl.ui.cls.OWLClassesTab
getHomeGraph(OntModel, OntResource) - Static method in class edu.stanford.smi.protegex.owl.jena.Jena
  Gets the Graph where the rdf:type statement of a certain resource is.
getHomeResource(String) - Method in class edu.stanford.smi.protegex.owl.model.triplestore.impl.TripleStoreImpl
getHomeResource(String) - Method in interface edu.stanford.smi.protegex.owl.model.triplestore.TripleStore
getHomeTripleStore(RDFResource) - Method in class edu.stanford.smi.protegex.owl.model.triplestore.impl.TripleStoreModelImpl
getHomeTripleStore(Instance, Slot, Object) - Method in class edu.stanford.smi.protegex.owl.model.triplestore.impl.TripleStoreModelImpl
getHomeTripleStore(RDFResource) - Method in interface edu.stanford.smi.protegex.owl.model.triplestore.TripleStoreModel
  Gets the "home" triple store of a given resource.
getHomeTripleStore(Instance, Slot, Object) - Method in interface edu.stanford.smi.protegex.owl.model.triplestore.TripleStoreModel
  The home triple store of the triple defined by the method arguments.
getHomeTripleStore(RDFResource) - Method in class edu.stanford.smi.protegex.owl.server.triplestore.ClientTripleStoreModel
getHomeTripleStore(Instance, Slot, Object) - Method in class edu.stanford.smi.protegex.owl.server.triplestore.ClientTripleStoreModel
getHost() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.log.WarningMessageTestResult
getHost() - Method in class edu.stanford.smi.protegex.owl.testing.DefaultOWLTestResult
getHost() - Method in interface edu.stanford.smi.protegex.owl.testing.OWLTestResult
getHost() - Method in class edu.stanford.smi.protegex.owl.ui.search.finder.FindResult
getHours() - Method in class edu.stanford.smi.protegex.owl.ui.widget.TimePanel
getHTMLMessage() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.log.MessageLogRecord
getIcon() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.log.WarningMessageTestResult
  Gets an Icon to represent this type of OWLTestResult.
getIcon(String) - Static method in class edu.stanford.smi.protegex.owl.inference.ui.icons.InferenceIcons
getIcon() - Method in class edu.stanford.smi.protegex.owl.inference.ui.ReasonerWarningPanel
getIcon() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLAnonymousClass
getIcon() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLProperty
getIcon() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLNamedClass
getIcon() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLOntology
getIcon() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFExternalResource
getIcon() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFIndividual
getIcon() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
getIcon() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFSDatatype
getIcon() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFSNamedClass
getIcon() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFUntypedResource
getIcon() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeInstance
  Deprecated. use ProtegeUI.getIcon() instead
getIcon() - Method in class edu.stanford.smi.protegex.owl.swrl.model.impl.DefaultSWRLBuiltin
getIcon() - Method in class edu.stanford.smi.protegex.owl.swrl.model.impl.DefaultSWRLImp
getIcon() - Method in class edu.stanford.smi.protegex.owl.swrl.model.impl.DefaultSWRLVariable
getIcon(RDFResource) - Method in class edu.stanford.smi.protegex.owl.swrl.ui.table.SWRLTableModel
getIcon() - Method in class edu.stanford.smi.protegex.owl.testing.DefaultOWLTestResult
getIcon() - Method in interface edu.stanford.smi.protegex.owl.testing.OWLTestResult
  Gets an Icon to represent this type of OWLTestResult.
getIcon(TripleAction) - Static method in class edu.stanford.smi.protegex.owl.ui.actions.triple.TripleActionSwingAction
getIcon(RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.classform.component.property.PropertyFormTableModel
getIcon(RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.DisjointClassesTableModel
getIcon() - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.manchester.AbstractNamedObjectCreationSuggestion
getIcon() - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.manchester.CreateClassSuggestion
getIcon() - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.manchester.CreateDatatypePropertySuggestion
getIcon() - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.manchester.CreateIndividualSuggestion
getIcon() - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.manchester.CreateObjectPropertySuggestion
getIcon() - Method in interface edu.stanford.smi.protegex.owl.ui.clsdesc.manchester.Suggestion
getIcon() - Method in class edu.stanford.smi.protegex.owl.ui.clsproperties.NewRestrictionTreeNode
getIcon() - Method in class edu.stanford.smi.protegex.owl.ui.clsproperties.OldRestrictionTreeNode
getIcon() - Method in class edu.stanford.smi.protegex.owl.ui.clsproperties.PropertyTreeNode
getIcon() - Method in class edu.stanford.smi.protegex.owl.ui.clsproperties.RestrictionTreeNode
getIcon() - Method in class edu.stanford.smi.protegex.owl.ui.components.triples.AbstractTriplesComponent
getIcon(int) - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTableItem
getIcon(RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTableModel
getIcon(int, int) - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTableModel
getIcon(RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.icons.DefaultIconFactory
getIcon(RDFResource) - Method in interface edu.stanford.smi.protegex.owl.ui.icons.IconFactory
getIcon(OWLModelAction) - Static method in class edu.stanford.smi.protegex.owl.ui.menu.OWLModelActionAction
getIcon(String) - Static method in class edu.stanford.smi.protegex.owl.ui.metrics.lang.ExpressivityIcons
getIcon(RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.owltable.AbstractOWLTableModel
getIcon(RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.owltable.SymbolTable
getIcon(RDFResource) - Method in interface edu.stanford.smi.protegex.owl.ui.owltable.SymbolTableModel
getIcon(RDFResource) - Static method in class edu.stanford.smi.protegex.owl.ui.ProtegeUI
  Gets an Icon representing a given resource, using the current `IconFactory`.
getIcon() - Method in class edu.stanford.smi.protegex.owl.ui.query.SPARQLResultsPanel
getIcon() - Method in class edu.stanford.smi.protegex.owl.ui.results.ResultsPanel
getIcon() - Method in class edu.stanford.smi.protegex.owl.ui.search.finder.RetainFindResultsPanel
getIcon() - Method in class edu.stanford.smi.protegex.owl.ui.search.FindUsagePanel
getIcon() - Method in class edu.stanford.smi.protegex.owl.ui.search.FindUsageTableItem
getIcon() - Method in class edu.stanford.smi.protegex.owl.ui.subsumption.ChangedClassesPanel
getIcon() - Method in class edu.stanford.smi.protegex.owl.ui.testing.OWLTestResultsPanel
getIconFactory() - Static method in class edu.stanford.smi.protegex.owl.ui.ProtegeUI
getIconFileName() - Method in class edu.stanford.smi.protegex.owl.inference.ui.action.CheckConsistencyAction
getIconFileName() - Method in class edu.stanford.smi.protegex.owl.inference.ui.action.ClassifyTaxonomyAction
getIconFileName() - Method in class edu.stanford.smi.protegex.owl.inference.ui.action.ComputeInferredTypesAction
getIconFileName() - Method in class edu.stanford.smi.protegex.owl.inference.ui.inspector.ShowReasonerInspectorAction
getIconFileName() - Method in class edu.stanford.smi.protegex.owl.swrl.ui.actions.EnableSWRLTabAction
getIconFileName() - Method in class edu.stanford.smi.protegex.owl.ui.actions.AbstractOWLModelAction
getIconFileName() - Method in interface edu.stanford.smi.protegex.owl.ui.actions.IconOwner
  Gets the relative name of an (optional) icon.
getIconFileName() - Method in class edu.stanford.smi.protegex.owl.ui.actions.triple.AbstractTripleAction
getIconFileName() - Method in class edu.stanford.smi.protegex.owl.ui.menu.code.SourceCodeAction
getIconFileName() - Method in class edu.stanford.smi.protegex.owl.ui.menu.preferences.PreferencesAction
getIconFileName() - Method in class edu.stanford.smi.protegex.owl.ui.query.FindAssertionsAction
getIconFileName() - Method in class edu.stanford.smi.protegex.owl.ui.query.SPARQLOWLModelAction
getIconFileName() - Method in class edu.stanford.smi.protegex.owl.ui.repository.ShowRepositoryEditorAction
getIconFileName() - Method in class edu.stanford.smi.protegex.owl.ui.testing.OWLTestAction
getIconFileName() - Method in class edu.stanford.smi.protegex.owl.ui.testing.OWLTestSettingsAction
  Deprecated.
getIconFileName() - Method in class edu.stanford.smi.protegex.owl.ui.testing.ShowTodoListAction
getIconHeight() - Method in class edu.stanford.smi.protegex.owl.ui.icons.OverlayIcon
getIconHeight() - Method in class edu.stanford.smi.protegex.owl.ui.resourceselection.DropDownOverlayIcon
getIconLocation() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
getIconLocation() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFIndividual
getIconLocation() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
getIconLocation() - Method in interface edu.stanford.smi.protegex.owl.model.RDFResource
  Gets a class that serves as a location of the icon resource.
getIconName() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLProperty
getIconName() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLAllValuesFrom
getIconName() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLCardinality
getIconName() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLComplementClass
getIconName() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLDatatypeProperty
getIconName() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLEnumeratedClass
getIconName() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLHasValue
getIconName() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLIntersectionClass
getIconName() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLMaxCardinality
getIconName() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLMinCardinality
getIconName() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLNamedClass
getIconName() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLObjectProperty
getIconName() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLSomeValuesFrom
getIconName() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLUnionClass
getIconName() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFIndividual
getIconName() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
getIconName() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFSNamedClass
getIconName() - Method in interface edu.stanford.smi.protegex.owl.model.RDFResource
  Gets the local name of an icon for this type of resource.
getIconResourceClass() - Method in class edu.stanford.smi.protegex.owl.inference.ui.inspector.ShowReasonerInspectorAction
getIconResourceClass() - Method in class edu.stanford.smi.protegex.owl.swrl.ui.actions.EnableSWRLTabAction
getIconResourceClass() - Method in class edu.stanford.smi.protegex.owl.ui.actions.AbstractOWLModelAction
getIconResourceClass() - Method in interface edu.stanford.smi.protegex.owl.ui.actions.IconOwner
  Gets a Class that is in the same folder as the icon file.
getIconResourceClass() - Method in class edu.stanford.smi.protegex.owl.ui.actions.triple.AbstractTripleAction
getIconResourceClass() - Method in class edu.stanford.smi.protegex.owl.ui.testing.AbstractOWLModelTestAction
getIconWidth() - Method in class edu.stanford.smi.protegex.owl.ui.icons.OverlayIcon
getIconWidth() - Method in class edu.stanford.smi.protegex.owl.ui.resourceselection.DropDownOverlayIcon
getID() - Method in class edu.stanford.smi.protegex.owl.inference.dig.exception.DIGError
getID() - Method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DefaultDIGQueryResponse
getID() - Method in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGQueryResponse
  Gets the ID of the query that the reponse corresponds to
getIdentity() - Method in class edu.stanford.smi.protegex.owl.inference.dig.DefaultProtegeDIGReasoner
getIdentity() - Method in class edu.stanford.smi.protegex.owl.inference.dig.reasoner.DefaultDIGReasoner
  Gets the identity of the inference
getIdentity() - Method in interface edu.stanford.smi.protegex.owl.inference.dig.reasoner.DIGReasoner
  A helper method that gets the identity of the inference
getIdentity() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.DefaultProtegeOWLReasoner
getIdentity() - Method in interface edu.stanford.smi.protegex.owl.inference.protegeowl.ProtegeOWLReasoner
  Deprecated. Gets the identity of the DIG reasoner.
GetImage() - Method in class edu.stanford.smi.protegex.owl.model.classparser.compact.JavaCharStream
GetImage() - Method in class edu.stanford.smi.protegex.owl.model.classparser.dl.JavaCharStream
GetImage() - Method in class edu.stanford.smi.protegex.owl.model.classparser.manchester.JavaCharStream
getImageIcon() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLAnonymousClass
getImageIcon() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLNamedClass
getImageIcon() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFSNamedClass
getImageIcon() - Method in interface edu.stanford.smi.protegex.owl.model.RDFSClass
  Gets an ImageIcon displaying this.
getImageIcon(String) - Static method in class edu.stanford.smi.protegex.owl.swrl.ui.icons.DroolsIcons
getImageIcon(String) - Static method in class edu.stanford.smi.protegex.owl.swrl.ui.icons.JessIcons
getImageIcon(String) - Static method in class edu.stanford.smi.protegex.owl.swrl.ui.icons.SQWRLIcons
getImageIcon(String) - Static method in class edu.stanford.smi.protegex.owl.swrl.ui.icons.SWRLIcons
getImageIcon(String) - Static method in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
getImageIcon(String, Class) - Static method in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
getImageURL(Class, String) - Static method in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
getImp(String) - Method in class edu.stanford.smi.protegex.owl.swrl.model.SWRLFactory
getImp(int) - Method in class edu.stanford.smi.protegex.owl.swrl.ui.table.SWRLTableModel
getImpCls() - Method in class edu.stanford.smi.protegex.owl.swrl.SWRLSystemFrames
getImpIcon() - Static method in class edu.stanford.smi.protegex.owl.swrl.ui.icons.SWRLIcons
getImplementationClass(Class) - Method in class edu.stanford.smi.protegex.owl.model.factory.OWLJavaFactory
getImplementationClassName(Class) - Method in class edu.stanford.smi.protegex.owl.model.factory.OWLJavaFactory
getImplementationConstructor(Class) - Method in class edu.stanford.smi.protegex.owl.model.factory.OWLJavaFactory
getImplementationFile(RDFSNamedClass) - Method in class edu.stanford.smi.protegex.owl.javacode.JavaCodeGenerator
getImplementationName(RDFSNamedClass) - Method in class edu.stanford.smi.protegex.owl.javacode.JavaCodeGenerator
getImplementationNamePossiblyAbstract(RDFSNamedClass) - Method in class edu.stanford.smi.protegex.owl.javacode.JavaCodeGenerator
getImplementingClass() - Method in enum edu.stanford.smi.protegex.owl.model.factory.OWLFactoryClassType
getImportData() - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.imports.wizard.ImportWizard
getImportedOntologies() - Static method in class edu.stanford.smi.protegex.owl.jena.parser.OWLImportsCache
getImportEntries() - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.imports.wizard.ImportWizardData
getImportResources() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLOntology
getImportResources() - Method in interface edu.stanford.smi.protegex.owl.model.OWLOntology
  Gets the URIs of the imports as RDFUntypedResources or OWLOntologies.
getImports() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLOntology
getImports() - Method in interface edu.stanford.smi.protegex.owl.model.OWLOntology
  Gets the URIs of the imports (as strings)
getImportSource(OntModel, OntResource) - Static method in class edu.stanford.smi.protegex.owl.jena.Jena
getImportsTree() - Method in class edu.stanford.smi.protegex.owl.ui.importstree.ImportsTreePanel
getImportWizard() - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.imports.wizard.AbstractImportWizardPage
getImps() - Method in class edu.stanford.smi.protegex.owl.swrl.model.SWRLFactory
getImpsIcon() - Static method in class edu.stanford.smi.protegex.owl.swrl.ui.icons.SWRLIcons
getIncompatibleWith() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLOntology
getIncompatibleWith() - Method in interface edu.stanford.smi.protegex.owl.model.OWLOntology
getInconsistentClasses() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getInconsistentClasses() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets all classes which have been marked as inconsistent.
getInconsistentConcept() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.log.DefaultConceptConsistencyLogRecord
getIndentedClsString(OWLNAryLogicalClass, String) - Method in class edu.stanford.smi.protegex.owl.ui.code.SymbolTextArea
getIndentSize() - Method in class edu.stanford.smi.protegex.owl.writer.xml.XMLWriterPreferences
getIndexOfChild(Object, Object) - Method in class edu.stanford.smi.protegex.owl.ui.existential.ExistentialTreeModel
getIndividual(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getIndividual(OWLModel, URI) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getIndividualAxiomValueTagName(RDFSLiteral) - Method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DIGDataTypes
  Gets the XML DIG Document tag name for the specified specified object (e.g.
getIndividualDirectTypes(OWLIndividual) - Method in class edu.stanford.smi.protegex.owl.inference.reasoner.AbstractProtegeReasoner
getIndividualDirectTypes(OWLIndividual) - Method in interface edu.stanford.smi.protegex.owl.inference.reasoner.ProtegeReasoner
  Get the direct inferred types for the specified individual.
GetIndividualInferredTypesTask - Class in edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Aug 17, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
GetIndividualInferredTypesTask(OWLIndividual, ProtegeOWLReasoner) - Constructor for class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.GetIndividualInferredTypesTask
GetIndividualInferredTypesTask - Class in edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Aug 17, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
GetIndividualInferredTypesTask(OWLIndividual, ProtegeReasoner) - Constructor for class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.GetIndividualInferredTypesTask
getIndividualPropertyAtomCls() - Method in class edu.stanford.smi.protegex.owl.swrl.SWRLSystemFrames
GetIndividualPropertyValuesTask - Class in edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner
GetIndividualPropertyValuesTask(OWLIndividual, ProtegeReasoner) - Constructor for class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.GetIndividualPropertyValuesTask
getIndividuals() - Method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DefaultDIGQueryResponse
getIndividuals() - Method in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGQueryResponse
  If the query resulted in an individual set response type then this method may be used to obtain the individuals in the response.
getIndividuals(OWLModel) - Method in class edu.stanford.smi.protegex.owl.inference.util.ReasonerUtil
getIndividualsBelongingToClass(OWLClass, ReasonerTaskListener) - Method in class edu.stanford.smi.protegex.owl.inference.dig.DefaultProtegeDIGReasoner
getIndividualsBelongingToClass(OWLClass) - Method in class edu.stanford.smi.protegex.owl.inference.dig.DefaultProtegeDIGReasoner
getIndividualsBelongingToClass(OWLClass, ReasonerTaskListener) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.DefaultProtegeOWLReasoner
getIndividualsBelongingToClass(OWLClass, ReasonerTaskListener) - Method in interface edu.stanford.smi.protegex.owl.inference.protegeowl.ProtegeOWLReasoner
  Deprecated. Gets the individuals that are inferred to be members of the specified class.
getIndividualsBelongingToClass(OWLClass) - Method in class edu.stanford.smi.protegex.owl.inference.reasoner.AbstractProtegeReasoner
getIndividualsBelongingToClass(OWLClass) - Method in interface edu.stanford.smi.protegex.owl.inference.reasoner.ProtegeReasoner
  Gets the individuals that are inferred to be members of the specified class.
GetIndividualsBelongingToConceptTask - Class in edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Aug 17, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
GetIndividualsBelongingToConceptTask(OWLClass, ProtegeOWLReasoner) - Constructor for class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.GetIndividualsBelongingToConceptTask
GetIndividualsBelongingToConceptTask - Class in edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Aug 17, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
GetIndividualsBelongingToConceptTask(OWLClass, ProtegeReasoner) - Constructor for class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.GetIndividualsBelongingToConceptTask
getIndividualTypes(OWLIndividual, ReasonerTaskListener) - Method in class edu.stanford.smi.protegex.owl.inference.dig.DefaultProtegeDIGReasoner
getIndividualTypes(OWLIndividual) - Method in class edu.stanford.smi.protegex.owl.inference.dig.DefaultProtegeDIGReasoner
getIndividualTypes(OWLIndividual, ReasonerTaskListener) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.DefaultProtegeOWLReasoner
getIndividualTypes(OWLIndividual, ReasonerTaskListener) - Method in interface edu.stanford.smi.protegex.owl.inference.protegeowl.ProtegeOWLReasoner
  Deprecated. Get the inferred types for the specified individual.
getIndividualTypes(OWLIndividual) - Method in class edu.stanford.smi.protegex.owl.inference.reasoner.AbstractProtegeReasoner
getIndividualTypes(OWLIndividual) - Method in interface edu.stanford.smi.protegex.owl.inference.reasoner.ProtegeReasoner
  Get the inferred types (direct and indirect) for the specified individual.
getInferredConditionsWidget() - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsWidget
  Deprecated.
getInferredDirectTypes(RDFResource) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
getInferredEquivalentClasses() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLNamedClass
getInferredEquivalentClasses() - Method in interface edu.stanford.smi.protegex.owl.model.OWLNamedClass
getInferredInstanceCount() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
getInferredInstanceCount() - Method in interface edu.stanford.smi.protegex.owl.model.RDFSClass
  Gets the number of direct inferred instances of this class.
getInferredInstances(boolean) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
getInferredInstances(boolean) - Method in interface edu.stanford.smi.protegex.owl.model.RDFSClass
  Gets all resources that have this as their inferred type.
getInferredSubclasses() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLNamedClass
getInferredSubclasses() - Method in interface edu.stanford.smi.protegex.owl.model.OWLNamedClass
  Gets the subclasses that were computed by the most recent call of a classifier.
GetInferredSubClassesAction - Class in edu.stanford.smi.protegex.owl.inference.ui.action
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Oct 4, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
GetInferredSubClassesAction() - Constructor for class edu.stanford.smi.protegex.owl.inference.ui.action.GetInferredSubClassesAction
getInferredSuperclasses() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLNamedClass
getInferredSuperclasses() - Method in interface edu.stanford.smi.protegex.owl.model.OWLNamedClass
  Gets the superclasses that were computed by the most recent call of a classifier.
GetInferredSuperClassesAction - Class in edu.stanford.smi.protegex.owl.inference.ui.action
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Sep 8, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
GetInferredSuperClassesAction() - Constructor for class edu.stanford.smi.protegex.owl.inference.ui.action.GetInferredSuperClassesAction
getInferredTypes() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
getInferredTypes() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFIndividual
getInferredTypes() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
getInferredTypes() - Method in interface edu.stanford.smi.protegex.owl.model.RDFResource
  Gets the direct types that were inferred during the most recent execution of a reasoner.
getInformationMessageIcon() - Static method in class edu.stanford.smi.protegex.owl.inference.ui.icons.InferenceIcons
getInheritedBrowserSlotPattern() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeCls
getInheritedClsIcon(ImageIcon) - Static method in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
getInheritedFromClass() - Method in class edu.stanford.smi.protegex.owl.ui.clsproperties.NewRestrictionTreeNode
getInheritedFromClass() - Method in class edu.stanford.smi.protegex.owl.ui.clsproperties.OldRestrictionTreeNode
getInheritedFromClass() - Method in class edu.stanford.smi.protegex.owl.ui.clsproperties.RestrictionTreeNode
getInheritedIcon() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLDatatypeProperty
getInheritedIcon() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLObjectProperty
getInheritedIcon() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
getInheritedIcon() - Method in interface edu.stanford.smi.protegex.owl.model.RDFProperty
getInheritedIcon(ImageIcon, String) - Static method in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
getInheritedPropertyIcon(ImageIcon) - Static method in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
getInitialState() - Method in class edu.stanford.smi.protegex.owl.server.OwlStateMachine
getInitialValues() - Method in class edu.stanford.smi.protegex.owl.ui.matrix.cls.SubclassesMatrixFilter
getInitialValues() - Method in interface edu.stanford.smi.protegex.owl.ui.matrix.MatrixFilter
  Gets the values that shall be taken to build up the contents of the matrix.
getInputStream(URL) - Static method in class edu.stanford.smi.protegex.owl.jena.parser.ProtegeOWLParser
getInputStream(URI) - Method in class edu.stanford.smi.protegex.owl.repository.impl.AbstractLocalRepository
getInputStream(URI) - Method in class edu.stanford.smi.protegex.owl.repository.impl.AbstractStreamBasedRepositoryImpl
  Gets an inputstream to read the specified ontology from
getInputStream(URI) - Method in class edu.stanford.smi.protegex.owl.repository.impl.DublinCoreDLVersionRedirectRepository
getInputStream(URI) - Method in class edu.stanford.smi.protegex.owl.repository.impl.ForcedURLRetrievalRepository
getInputStream(URI) - Method in class edu.stanford.smi.protegex.owl.repository.impl.FTPRepository
getInputStream(URI) - Method in class edu.stanford.smi.protegex.owl.repository.impl.HTTPRepository
getInputStream() - Method in class edu.stanford.smi.protegex.owl.repository.util.FileInputSource
getInputStream() - Method in interface edu.stanford.smi.protegex.owl.repository.util.InputStreamSource
getInputStream() - Method in class edu.stanford.smi.protegex.owl.repository.util.URLInputSource
getInsertAndIcon() - Static method in class edu.stanford.smi.protegex.owl.swrl.ui.icons.SWRLIcons
getInsertImpIcon() - Static method in class edu.stanford.smi.protegex.owl.swrl.ui.icons.SWRLIcons
getInsertRowIndex(Cls) - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.PropertiesDefinitionTableModel
getInsertRowIndex(Cls) - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.PropertiesSuperclassesTableModel
getInsertRowIndex(Cls) - Method in class edu.stanford.smi.protegex.owl.ui.owltable.AbstractOWLTableModel
getInsertString(RDFResource) - Method in class edu.stanford.smi.protegex.owl.swrl.ui.code.SWRLResourceNameMatcher
getInsertString(RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.code.OWLResourceNameMatcher
getInsertString(RDFResource) - Method in interface edu.stanford.smi.protegex.owl.ui.code.ResourceNameMatcher
getInstance() - Static method in class edu.stanford.smi.protegex.owl.inference.dig.reasoner.DIGReasonerPreferences
getInstance(DIGReasoner) - Static method in class edu.stanford.smi.protegex.owl.inference.dig.reasoner.logger.DIGLogger
getInstance(OWLModel) - Static method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DIGDataTypes
getInstance() - Static method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DIGTranslatorFactory
  Gets the one and only instance of the factory.
getInstance() - Static method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DIGTranslatorPreferences
getInstance() - Static method in class edu.stanford.smi.protegex.owl.inference.protegeowl.log.ReasonerLogger
getInstance() - Static method in class edu.stanford.smi.protegex.owl.inference.protegeowl.log.ReasonerLogRecordFactory
getInstance() - Static method in class edu.stanford.smi.protegex.owl.inference.protegeowl.ReasonerManager
getInstance() - Static method in class edu.stanford.smi.protegex.owl.inference.util.ReasonerPreferences
getInstance() - Static method in class edu.stanford.smi.protegex.owl.inference.util.ReasonerUtil
getInstance(String) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
getInstance() - Static method in class edu.stanford.smi.protegex.owl.repository.factory.RepositoryFactory
getInstance(int) - Method in class edu.stanford.smi.protegex.owl.ui.matrix.MatrixTableModel
getInstance() - Static method in class edu.stanford.smi.protegex.owl.ui.repository.action.RepositoryActionManager
getInstance() - Method in class edu.stanford.smi.protegex.owl.ui.resourcedisplay.InstanceNameComponent
getInstance() - Method in class edu.stanford.smi.protegex.owl.ui.resourcedisplay.InstanceNameEditor
getInstance() - Method in class edu.stanford.smi.protegex.owl.ui.widget.AbstractPropertyWidget
  Deprecated.
getInstance() - Method in interface edu.stanford.smi.protegex.owl.ui.widget.PropertyWidget
  Deprecated.
getInstance() - Static method in class edu.stanford.smi.protegex.owl.writer.xml.XMLWriterFactory
  Gets the one and only instance of the `XMLWriterFactory`
getInstance() - Static method in class edu.stanford.smi.protegex.owl.writer.xml.XMLWriterPreferences
getInstanceCount(boolean) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
getInstanceCount() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeCls
  Deprecated.
getInstanceCount(Cls) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
getInstanceCount(boolean) - Method in interface edu.stanford.smi.protegex.owl.model.RDFSClass
  Gets the number of instances of this, possibly including the instances of all subclasses.
getInstanceDisplayPlugin(Class) - Static method in class edu.stanford.smi.protegex.owl.ui.resourcedisplay.ResourceDisplayPluginManager
getInstanceDisplayPluginClasses() - Static method in class edu.stanford.smi.protegex.owl.ui.resourcedisplay.ResourceDisplayPluginManager
getInstanceNameComponent() - Method in class edu.stanford.smi.protegex.owl.ui.resourcedisplay.ResourceDisplay
getInstances(boolean) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
getInstances() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeCls
  Deprecated.
getInstances() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
getInstances(Cls) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
getInstances(boolean) - Method in interface edu.stanford.smi.protegex.owl.model.RDFSClass
  Gets the instances of this, possibly including the instances of all subclasses.
getInstances(Cls) - Method in class edu.stanford.smi.protegex.owl.ui.dialogs.SelectResourcesPanel
getInstances(Cls, boolean) - Method in class edu.stanford.smi.protegex.owl.ui.dialogs.SelectResourcesPanel
getInstances(Cls, boolean) - Method in class edu.stanford.smi.protegex.owl.ui.dialogs.SelectResourcesWithBrowserTextPanel
getInstancesComparator() - Method in class edu.stanford.smi.protegex.owl.ui.dialogs.SelectResourcesWithBrowserTextPanel
getInstanceSelection() - Method in class edu.stanford.smi.protegex.owl.ui.dialogs.SelectResourcesPanel
getInstanceSelection() - Method in class edu.stanford.smi.protegex.owl.ui.dialogs.SelectResourcesWithBrowserTextPanel
getInstancesWithMultipleTypes() - Method in class edu.stanford.smi.protegex.owl.jena.parser.MultipleTypesInstanceCache
getInt() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFSLiteral
getInt() - Method in interface edu.stanford.smi.protegex.owl.model.RDFSLiteral
  Gets the value as an int.
getInteger(String) - Method in class edu.stanford.smi.protegex.owl.model.project.DefaultSettingsMap
getInteger(String) - Method in interface edu.stanford.smi.protegex.owl.model.project.SettingsMap
getIntegerDatatypes() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getIntegerDatatypes() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getIntegerDatatypes() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets all integer XML Schema datatypes, including xsd:int etc.
getInterfaceFile(RDFSNamedClass) - Method in class edu.stanford.smi.protegex.owl.emf.EMFGenerator
getInterfaceFile(RDFSNamedClass) - Method in class edu.stanford.smi.protegex.owl.javacode.JavaCodeGenerator
getInterfaceName(RDFSNamedClass) - Method in class edu.stanford.smi.protegex.owl.emf.EMFGenerator
getInterfaceName(RDFSNamedClass) - Method in class edu.stanford.smi.protegex.owl.javacode.JavaCodeGenerator
getInterfaceNamePossiblyAbstract(RDFSNamedClass) - Method in class edu.stanford.smi.protegex.owl.javacode.JavaCodeGenerator
getInternalFullName(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
getInternalFullName(OWLModel, String, boolean) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
getInvalidFrameNameDescription(String, Frame) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not needed
getInvalidOwnSlotValuesText(Slot, Collection) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeInstance
  Deprecated. not needed
getInvalidOwnSlotValuesText(Frame, Slot, Collection) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not supported
getInvalidOwnSlotValueText(Slot, Object) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeInstance
  Deprecated. not needed
getInvalidOwnSlotValueText(Frame, Slot, Object) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not supported
getInvalidTextDescription(String) - Method in class edu.stanford.smi.protegex.owl.ui.resourcedisplay.InstanceNameComponent
getInvalidTextDescription(String) - Method in class edu.stanford.smi.protegex.owl.ui.resourcedisplay.InstanceNameEditor
getInvalidTextDescription(String) - Method in class edu.stanford.smi.protegex.owl.ui.widget.ExternalResourceURLWidget
getInvalidValueText(Collection) - Method in class edu.stanford.smi.protegex.owl.ui.widget.HeaderWidget
getInverseProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
getInverseProperty() - Method in interface edu.stanford.smi.protegex.owl.model.RDFProperty
  Gets the inverse property of this.
getInversePropertyCount() - Method in class edu.stanford.smi.protegex.owl.model.util.ModelMetrics
getInverseSlot(Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
getInverseSlot() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeSlot
  Deprecated.
getInverseSlotSlot() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getIOAddresses() - Method in class edu.stanford.smi.protegex.owl.model.triplestore.impl.TripleStoreImpl
getIOAddresses() - Method in interface edu.stanford.smi.protegex.owl.model.triplestore.TripleStore
  Tracks the set of io names that have been used to retrieve this triple store.
getIsDefinedBy() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
getIsDefinedBy() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFIndividual
getIsDefinedBy() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
getIsDefinedBy(Instance) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
getIsDefinedBy() - Method in interface edu.stanford.smi.protegex.owl.model.RDFResource
  Gets all rdfs:isDefinedBy for this resource.
GetIsIncludedJob - Class in edu.stanford.smi.protegex.owl.util.job
GetIsIncludedJob(RDFResource) - Constructor for class edu.stanford.smi.protegex.owl.util.job.GetIsIncludedJob
getItems(RDFResource) - Static method in class edu.stanford.smi.protegex.owl.ui.search.FindUsage
getJavaC() - Method in class edu.stanford.smi.protegex.owl.ui.menu.code.KazukiPanel
getJavaClass(int) - Static method in class edu.stanford.smi.protegex.owl.model.factory.FrameTypeId2OWLJavaClass
getJavaClass() - Method in enum edu.stanford.smi.protegex.owl.swrl.model.factory.SWRLFrameTypeId
getJavaClassId(Frame) - Method in class edu.stanford.smi.protegex.owl.model.factory.OWLJavaFactory
getJavaClassId(Frame) - Method in class edu.stanford.smi.protegex.owl.swrl.model.factory.SWRLJavaFactory
getJavaInterfaceName(RDFSClass) - Method in class edu.stanford.smi.protegex.owl.model.factory.OWLJavaFactory
getJavaName() - Method in class edu.stanford.smi.protegex.owl.javacode.RDFPropertyAtClassCode
getJavaName() - Method in class edu.stanford.smi.protegex.owl.javacode.RDFPropertyCode
getJavaName() - Method in class edu.stanford.smi.protegex.owl.javacode.RDFSClassCode
getJavaType() - Method in class edu.stanford.smi.protegex.owl.javacode.RDFPropertyAtClassCode
getJenaModel() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getJenaModel() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets a (read-only) Jena Model serving as a live view upon the Protege TripleStores.
getJessIcon() - Static method in class edu.stanford.smi.protegex.owl.swrl.ui.icons.JessIcons
getJLabel() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.log.MessageLogRecord
getJToolBar(InstanceDisplay) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.WidgetUtilities
getJToolBar(Container) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.WidgetUtilities
getKnowledgeBase() - Method in class edu.stanford.smi.protegex.owl.inference.dig.DefaultProtegeDIGReasoner
getKnowledgeBase() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.DefaultProtegeOWLReasoner
getKnowledgeBase() - Method in interface edu.stanford.smi.protegex.owl.inference.protegeowl.ProtegeOWLReasoner
  Deprecated. Gets the knowledge base (OWLModel) that this reasoner reasons over.
getKnowledgeBase() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeInstance
  Deprecated.
getKnowledgeBase() - Method in class edu.stanford.smi.protegex.owl.server.triplestore.GetPackage
getKnowledgeBase() - Method in class edu.stanford.smi.protegex.owl.ui.widget.AbstractTabWidget
  Deprecated. use getOWLModel() instead
getKnowledgeBase() - Method in class edu.stanford.smi.protegex.owl.util.job.GetTripleStoreOfTripleJob
getLabel() - Method in class edu.stanford.smi.protegex.owl.ui.clsproperties.PropertyRestrictionsTreeWidget
getLabel() - Method in class edu.stanford.smi.protegex.owl.ui.components.AbstractPropertyValuesComponent
getLabel() - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.OWLMetadataTab
getLabeledComponent() - Method in class edu.stanford.smi.protegex.owl.ui.cls.AssertedClassesPanel
getLabeledComponent() - Method in class edu.stanford.smi.protegex.owl.ui.cls.ClassTreeComponent
getLabeledComponent() - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.ClassDescriptionWidget
getLabeledComponent() - Method in class edu.stanford.smi.protegex.owl.ui.existential.ExistentialTreePanel
getLabeledComponent() - Method in class edu.stanford.smi.protegex.owl.ui.explorer.ExplorerTreePanel
getLabeledComponent() - Method in class edu.stanford.smi.protegex.owl.ui.subsumption.SubsumptionTreePanel
getLabelPanel() - Method in class edu.stanford.smi.protegex.owl.ui.triplestore.TripleStoreSelectionAction
getLabels() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
getLabels() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFIndividual
getLabels() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
getLabels(RDFResource) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
getLabels() - Method in interface edu.stanford.smi.protegex.owl.model.RDFResource
  Gets the rdfs:labels that are currenly defined for this.
getLabelText() - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.ClassDescriptionWidget
getLabelText() - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.DisjointClassesWidget
getLabelText() - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.PropertiesSuperclassesWidget
getLanguage() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFSLiteral
getLanguage() - Method in interface edu.stanford.smi.protegex.owl.model.RDFSLiteral
  Gets the language if it has been defined for this.
getLanguage(int) - Method in class edu.stanford.smi.protegex.owl.ui.components.triples.TriplesTableModel
getLanguageFromRawValue() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFSLiteral
getLastClassificationTime() - Method in class edu.stanford.smi.protegex.owl.inference.util.ReasonerUtil
getLastName() - Method in interface edu.stanford.smi.protegex.owlx.examples.javaDemo.model.Customer_
getLastName() - Method in class edu.stanford.smi.protegex.owlx.examples.javaDemo.model.impl.DefaultCustomer_
getLastNameProperty() - Method in interface edu.stanford.smi.protegex.owlx.examples.javaDemo.model.Customer_
getLastNameProperty() - Method in class edu.stanford.smi.protegex.owlx.examples.javaDemo.model.impl.DefaultCustomer_
getLastSearch() - Method in class edu.stanford.smi.protegex.owl.ui.search.finder.BasicFind
getLastSearch() - Method in interface edu.stanford.smi.protegex.owl.ui.search.finder.Find
getLastTriple() - Method in class edu.stanford.smi.protegex.owl.model.triplestore.TriplePath
getLatestCompatibleBuild() - Static method in class edu.stanford.smi.protegex.owl.resource.OWLText
  Deprecated.
getLength() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFSDatatype
getLength() - Method in interface edu.stanford.smi.protegex.owl.model.RDFSDatatype
  Gets the value of the xsd:length facet of this (user-defined) datatype.
getLength() - Method in class edu.stanford.smi.protegex.owl.model.triplestore.TriplePath
getLine() - Method in class edu.stanford.smi.protegex.owl.model.classparser.compact.JavaCharStream
  Deprecated.
getLine() - Method in class edu.stanford.smi.protegex.owl.model.classparser.dl.JavaCharStream
  Deprecated.
getLine() - Method in class edu.stanford.smi.protegex.owl.model.classparser.manchester.JavaCharStream
  Deprecated.
getListCellRendererComponent(JList, Object, int, boolean, boolean) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.log.DefaultConceptConsistencyLogRecord
getListCellRendererComponent(JList, Object, int, boolean, boolean) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.log.DIGErrorExceptionLogRecord
getListCellRendererComponent(JList, Object, int, boolean, boolean) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.log.MessageLogRecord
  Return a component that has been configured to display the specified value.
getListCellRendererComponent(JList, Object, int, boolean, boolean) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.log.OWLInstanceLogRecord
  Return a component that has been configured to display the specified value.
getListCellRendererComponent(JList, Object, int, boolean, boolean) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.log.OWLPropertyLogRecord
getListCellRendererComponent(JList, Object, int, boolean, boolean) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.log.ReasonerErrorExceptionLogRecord
getListCellRendererComponent(JList, Object, int, boolean, boolean) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.log.ReasonerLogRecordRenderer
  Return a component that has been configured to display the specified value.
getListCellRendererComponent(JList, Object, int, boolean, boolean) - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.manchester.SuggestionRenderer
getListCellRendererComponent(JList, Object, int, boolean, boolean) - Method in class edu.stanford.smi.protegex.owl.ui.components.ComponentUtil.DatatypeCellRenderer
getListClass() - Method in class edu.stanford.smi.protegex.owl.ui.components.rdflist.RDFListComponent
getListeners() - Method in class edu.stanford.smi.protegex.owl.ui.search.finder.BasicFind
getListModel() - Method in class edu.stanford.smi.protegex.owl.ui.components.multiresource.MultiResourceList
getListResource() - Method in class edu.stanford.smi.protegex.owl.ui.components.rdflist.RDFListComponent
getLiteralValues(List) - Method in class edu.stanford.smi.protegex.owl.model.framestore.OWLFrameStore
  Deprecated. This method was moved into AbstractOWLModel
getLocalChildren(Cls, boolean) - Method in class edu.stanford.smi.protegex.owl.ui.cls.ClassTreeWithBrowserTextNode
getLocalClassificationFrameStore() - Method in class edu.stanford.smi.protegex.owl.model.framestore.OWLFrameStoreManager
getLocalFile() - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.imports.emptyimport.EmptyImportWizard
getLocalName() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
getLocalName() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFIndividual
getLocalName() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
getLocalName() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFUntypedResource
getLocalName(String) - Static method in class edu.stanford.smi.protegex.owl.model.NamespaceUtil
getLocalName() - Method in interface edu.stanford.smi.protegex.owl.model.RDFResource
  Gets the local part of the full URI (name) of this resource.
getLocalNameForResourceName(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
  Deprecated. Use `AbstractOWLModel.getLocalNameForURI(String)`
getLocalNameForResourceName(String) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
getLocalNameForURI(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getLocalNameForURI(String) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets the local part of an URI, e.g.
getLocalNameForURI(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getLocalResourceRenderer() - Method in class edu.stanford.smi.protegex.owl.ui.cls.OWLSubclassPane
getLocation(URI) - Method in class edu.stanford.smi.protegex.owl.repository.impl.HTTPRepository
getLogicalPredicatesNames() - Static method in class edu.stanford.smi.protegex.owl.jena.parser.OWLFramesMapping
getLogOutputStream() - Method in class edu.stanford.smi.protegex.owl.inference.dig.reasoner.DIGReasonerPreferences
  Gets the output stream used for logging.
getLong() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFSLiteral
getLong() - Method in interface edu.stanford.smi.protegex.owl.model.RDFSLiteral
getMainSplitPane() - Method in class edu.stanford.smi.protegex.owl.ui.cls.OWLClassesTab
getMatches(String, int) - Method in class edu.stanford.smi.protegex.owl.ui.subsumption.SubsumptionTreeFinder
getMatchingDatatypeNames(String, Set<RDFResource>, OWLModel) - Static method in class edu.stanford.smi.protegex.owl.ui.code.OWLResourceNameMatcher
getMatchingFrames(Slot, Facet, boolean, String, int) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
getMatchingIndividuals(OWLModel, String, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getMatchingIndividualsOfClass(OWLModel, String, String, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getMatchingReferences(String, int) - Method in class edu.stanford.smi.protegex.owl.model.framestore.OWLFrameStore
getMatchingReferences(String, int) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
getMatchingResource() - Method in class edu.stanford.smi.protegex.owl.ui.search.finder.FindResult
getMatchingResources(RDFProperty, String, int) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getMatchingResources(RDFProperty, String, int) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets all RDFResources that have a matching value for a given property.
getMatchingResources(String, String, OWLModel) - Method in class edu.stanford.smi.protegex.owl.swrl.ui.code.SWRLResourceNameMatcher
getMatchingResources(String, String, OWLModel) - Method in class edu.stanford.smi.protegex.owl.ui.code.OWLResourceNameMatcher
getMatchingResources(String, String, OWLModel) - Method in interface edu.stanford.smi.protegex.owl.ui.code.ResourceNameMatcher
getMatchValue() - Method in class edu.stanford.smi.protegex.owl.ui.search.finder.FindResult
getMatrixColumn(int) - Method in class edu.stanford.smi.protegex.owl.ui.matrix.MatrixTableModel
getMaxArgsProperty() - Method in class edu.stanford.smi.protegex.owl.swrl.SWRLSystemFrames
getMaxCardinality(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLNamedClass
getMaxCardinality(RDFProperty) - Method in interface edu.stanford.smi.protegex.owl.model.OWLNamedClass
  Gets the maximum number of values that are allowed for a given property at this class.
getMaxCardinalityCount() - Method in class edu.stanford.smi.protegex.owl.model.util.ModelMetrics
getMaxExclusive() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFSDatatype
getMaxExclusive() - Method in interface edu.stanford.smi.protegex.owl.model.RDFSDatatype
  Gets the value of the xsd:maxExclusive facet of this (user-defined) datatype.
getMaximumCardinality(Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
getMaximumCardinality() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeSlot
  Deprecated.
getMaximumValue(Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not supported in OWL
getMaximumValue() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeSlot
  Deprecated. no OWL equivalent
getMaxInclusive() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFSDatatype
getMaxInclusive() - Method in interface edu.stanford.smi.protegex.owl.model.RDFSDatatype
  Gets the value of the xsd:maxInclusive facet of this (user-defined) datatype.
getMaxInferredParents() - Method in class edu.stanford.smi.protegex.owl.model.util.ModelMetrics
getMaxKeyword() - Static method in class edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParserUtil
getMaxLength() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFSDatatype
getMaxLength() - Method in interface edu.stanford.smi.protegex.owl.model.RDFSDatatype
  Gets the value of the xsd:maxLength facet of this (user-defined) datatype.
getMaxParents() - Method in class edu.stanford.smi.protegex.owl.model.util.ModelMetrics
getMaxSiblings() - Method in class edu.stanford.smi.protegex.owl.model.util.ModelMetrics
getMeanInferredParents() - Method in class edu.stanford.smi.protegex.owl.model.util.ModelMetrics
getMeanParents() - Method in class edu.stanford.smi.protegex.owl.model.util.ModelMetrics
getMeanSiblings() - Method in class edu.stanford.smi.protegex.owl.model.util.ModelMetrics
getMenubarPath() - Method in class edu.stanford.smi.protegex.owl.inference.ui.action.CheckConsistencyAction
getMenubarPath() - Method in class edu.stanford.smi.protegex.owl.inference.ui.action.ClassifyTaxonomyAction
getMenubarPath() - Method in class edu.stanford.smi.protegex.owl.inference.ui.action.ComputeInferredTypesAction
getMenubarPath() - Method in class edu.stanford.smi.protegex.owl.inference.ui.inspector.ShowReasonerInspectorAction
getMenubarPath() - Method in class edu.stanford.smi.protegex.owl.javacode.JavaCodeGeneratorAction
getMenubarPath() - Method in class edu.stanford.smi.protegex.owl.swrl.ui.actions.EnableSWRLTabAction
getMenubarPath() - Method in interface edu.stanford.smi.protegex.owl.ui.actions.OWLModelAction
  Gets a path to the menu bar location of this action.
getMenubarPath() - Method in class edu.stanford.smi.protegex.owl.ui.importstree.ImportsTreeAction
getMenubarPath() - Method in class edu.stanford.smi.protegex.owl.ui.jena.JenaSchemagenAction
getMenubarPath() - Method in class edu.stanford.smi.protegex.owl.ui.menu.code.DIGAction
getMenubarPath() - Method in class edu.stanford.smi.protegex.owl.ui.menu.code.EMFAction
getMenubarPath() - Method in class edu.stanford.smi.protegex.owl.ui.menu.code.KazukiAction
getMenubarPath() - Method in class edu.stanford.smi.protegex.owl.ui.menu.code.SourceCodeAction
getMenubarPath() - Method in class edu.stanford.smi.protegex.owl.ui.menu.DublinCoreAction
getMenubarPath() - Method in class edu.stanford.smi.protegex.owl.ui.menu.preferences.PreferencesAction
getMenubarPath() - Method in class edu.stanford.smi.protegex.owl.ui.menu.ValidatorAction
getMenubarPath() - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.alldifferent.AllDifferentAction
getMenubarPath() - Method in class edu.stanford.smi.protegex.owl.ui.metrics.ShowMetricsAction
getMenubarPath() - Method in class edu.stanford.smi.protegex.owl.ui.query.SPARQLOWLModelAction
getMenubarPath() - Method in class edu.stanford.smi.protegex.owl.ui.repository.ShowRepositoryEditorAction
getMenubarPath() - Method in class edu.stanford.smi.protegex.owl.ui.testing.AbstractOWLModelTestAction
getMenubarPath() - Method in class edu.stanford.smi.protegex.owl.ui.testing.OWLTestSettingsAction
  Deprecated.
getMessage() - Method in class edu.stanford.smi.protegex.owl.inference.dig.exception.DIGError
getMessage(int) - Method in exception edu.stanford.smi.protegex.owl.inference.dig.exception.DIGErrorException
  Gets the exception message of the specified exception.
getMessage() - Method in class edu.stanford.smi.protegex.owl.inference.dig.reasoner.DIGReasonerIdentity
  Gets the inference message.
getMessage() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.log.DefaultConceptConsistencyLogRecord
getMessage() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.log.MessageLogRecord
getMessage() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.log.WarningMessageTestResult
getMessage() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.AbstractReasonerTask
getMessage() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.AbstractReasonerTask
getMessage() - Method in interface edu.stanford.smi.protegex.owl.inference.protegeowl.task.ReasonerTask
  Gets the current task message.
getMessage() - Method in exception edu.stanford.smi.protegex.owl.model.classparser.compact.ParseException
  This method has the standard behavior when this object has been created using the standard constructors.
getMessage() - Method in error edu.stanford.smi.protegex.owl.model.classparser.compact.TokenMgrError
  You can also modify the body of this method to customize your error messages.
getMessage() - Method in exception edu.stanford.smi.protegex.owl.model.classparser.dl.ParseException
  This method has the standard behavior when this object has been created using the standard constructors.
getMessage() - Method in error edu.stanford.smi.protegex.owl.model.classparser.dl.TokenMgrError
  You can also modify the body of this method to customize your error messages.
getMessage() - Method in exception edu.stanford.smi.protegex.owl.model.classparser.manchester.ParseException
  This method has the standard behavior when this object has been created using the standard constructors.
getMessage() - Method in error edu.stanford.smi.protegex.owl.model.classparser.manchester.TokenMgrError
  You can also modify the body of this method to customize your error messages.
getMessage() - Method in class edu.stanford.smi.protegex.owl.testing.DefaultOWLTestResult
getMessage() - Method in interface edu.stanford.smi.protegex.owl.testing.OWLTestResult
getMetaclassIcon() - Static method in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
getMetricName() - Method in class edu.stanford.smi.protegex.owl.ui.metrics.MetricObject
getMinArgsProperty() - Method in class edu.stanford.smi.protegex.owl.swrl.SWRLSystemFrames
getMinCardinality(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLNamedClass
getMinCardinality(RDFProperty) - Method in interface edu.stanford.smi.protegex.owl.model.OWLNamedClass
  Gets the minimum number of values that are allowed for a given property at this class.
getMinCardinalityCount() - Method in class edu.stanford.smi.protegex.owl.model.util.ModelMetrics
getMinExclusive() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFSDatatype
getMinExclusive() - Method in interface edu.stanford.smi.protegex.owl.model.RDFSDatatype
  Gets the value of the xsd:minExclusive facet of this (user-defined) datatype.
getMinimumCardinality(Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not supported in OWL
getMinimumCardinality() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeSlot
  Deprecated. no OWL equivalent
getMinimumSize() - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.ClassDescriptionWidget
getMinimumSize() - Method in class edu.stanford.smi.protegex.owl.ui.clsproperties.PropertyRestrictionsTreeWidget
getMinimumSize() - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsWidget
getMinimumValue(Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not supported in OWL
getMinimumValue() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeSlot
  Deprecated. no OWL equivalent
getMinInclusive() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFSDatatype
getMinInclusive() - Method in interface edu.stanford.smi.protegex.owl.model.RDFSDatatype
  Gets the value of the xsd:minInclusive facet of this (user-defined) datatype.
getMinKeyword() - Static method in class edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParserUtil
getMinLength() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFSDatatype
getMinLength() - Method in interface edu.stanford.smi.protegex.owl.model.RDFSDatatype
  Gets the value of the xsd:minLength facet of this (user-defined) datatype.
getMinutes() - Method in class edu.stanford.smi.protegex.owl.ui.widget.TimePanel
getModalDialogFactory() - Static method in class edu.stanford.smi.protegex.owl.ui.ProtegeUI
getModeInferredParents() - Method in class edu.stanford.smi.protegex.owl.model.util.ModelMetrics
getModel() - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.manchester.AbstractNamedObjectCreationSuggestion
getmodel() - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.manchester.ManchesterOWLTextPane
getModel() - Method in class edu.stanford.smi.protegex.owl.ui.code.SymbolEditorComponent
getModel() - Method in class edu.stanford.smi.protegex.owl.ui.search.finder.BasicFind
getModel() - Method in interface edu.stanford.smi.protegex.owl.ui.search.finder.Find
getModelListener() - Method in class edu.stanford.smi.protegex.owl.inference.reasoner.AbstractProtegeReasoner
getModeParents() - Method in class edu.stanford.smi.protegex.owl.model.util.ModelMetrics
getModeSiblings() - Method in class edu.stanford.smi.protegex.owl.model.util.ModelMetrics
getMultipleTypesInstanceCache() - Method in class edu.stanford.smi.protegex.owl.jena.parser.GlobalParserCache
getMultiWidgetInstance() - Method in class edu.stanford.smi.protegex.owl.ui.widget.MultiWidgetPropertyWidget
getName() - Method in class edu.stanford.smi.protegex.owl.inference.dig.reasoner.DIGReasonerIdentity
  Gets the name of the inference.
getName() - Method in class edu.stanford.smi.protegex.owl.inference.ui.action.CheckConsistencyAction
getName() - Method in class edu.stanford.smi.protegex.owl.inference.ui.action.ClassifyTaxonomyAction
getName() - Method in class edu.stanford.smi.protegex.owl.inference.ui.action.ComputeInferredTypesAction
getName() - Method in class edu.stanford.smi.protegex.owl.inference.ui.inspector.ShowReasonerInspectorAction
getName() - Method in class edu.stanford.smi.protegex.owl.javacode.JavaCodeGeneratorAction
getName() - Method in class edu.stanford.smi.protegex.owl.jena.export.AbstractJenaFileExportPlugin
getName() - Method in class edu.stanford.smi.protegex.owl.jena.export.JenaExportPlugin
getName() - Method in class edu.stanford.smi.protegex.owl.jena.importer.JenaImportPlugin
getName() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not needed
getName(Frame) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not needed
getName() - Method in interface edu.stanford.smi.protegex.owl.model.RDFResource
  Gets the full name for the resource.,
getName() - Method in class edu.stanford.smi.protegex.owl.model.triplestore.impl.TripleStoreImpl
getName() - Method in interface edu.stanford.smi.protegex.owl.model.triplestore.TripleStore
getName(OWLModel, int) - Static method in class edu.stanford.smi.protegex.owl.model.XSPNames
getName() - Static method in class edu.stanford.smi.protegex.owl.resource.OWLText
getName() - Method in class edu.stanford.smi.protegex.owl.swrl.ui.actions.EnableSWRLTabAction
getName() - Method in class edu.stanford.smi.protegex.owl.testing.AbstractOWLTest
getName() - Method in class edu.stanford.smi.protegex.owl.testing.constraints.FindSPARQLAssertsTest
getName() - Method in interface edu.stanford.smi.protegex.owl.testing.OWLTest
getName() - Method in class edu.stanford.smi.protegex.owl.testing.style.MinCardiZeroTest
getName() - Method in class edu.stanford.smi.protegex.owl.testing.style.PrimitiveSubclassesDisjointTest
getName() - Method in class edu.stanford.smi.protegex.owl.testing.style.SingleAssertedSuperclassTest
getName() - Method in class edu.stanford.smi.protegex.owl.testing.style.SubclassesRestrictionDuplicatesThatOfSuperTest
getName() - Method in class edu.stanford.smi.protegex.owl.testing.todo.DeprecationOWLTest
getName() - Method in class edu.stanford.smi.protegex.owl.testing.todo.TodoAnnotationOWLTest
getName() - Method in interface edu.stanford.smi.protegex.owl.ui.actions.OWLModelAction
  Gets the human readable name of this action, to be used as menu item text and tool bar button tool tip text.
getName() - Method in class edu.stanford.smi.protegex.owl.ui.actions.triple.AbstractTripleAction
getName() - Method in interface edu.stanford.smi.protegex.owl.ui.actions.triple.TripleAction
  Gets the name of the action to appear on screen.
getName() - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.manchester.AbstractNamedObjectCreationSuggestion
getName() - Method in class edu.stanford.smi.protegex.owl.ui.importstree.ImportsTreeAction
getName() - Method in class edu.stanford.smi.protegex.owl.ui.jena.JenaSchemagenAction
getName() - Method in class edu.stanford.smi.protegex.owl.ui.matrix.AbstractMatrixColumn
getName() - Method in class edu.stanford.smi.protegex.owl.ui.matrix.AnnotationPropertyMatrixColumn
getName() - Method in class edu.stanford.smi.protegex.owl.ui.matrix.cls.ExistentialMatrixColumn
getName() - Method in class edu.stanford.smi.protegex.owl.ui.matrix.cls.SubclassesMatrixFilter
getName() - Method in interface edu.stanford.smi.protegex.owl.ui.matrix.MatrixColumn
getName() - Method in interface edu.stanford.smi.protegex.owl.ui.matrix.MatrixFilter
  Gets the name of the filter for display purposes (the tab name).
getName() - Method in class edu.stanford.smi.protegex.owl.ui.matrix.property.PropertyCharacteristicsMatrixColumn
getName() - Method in class edu.stanford.smi.protegex.owl.ui.matrix.property.PropertyDomainMatrixColumn
getName() - Method in class edu.stanford.smi.protegex.owl.ui.matrix.property.PropertyRangeMatrixColumn
getName() - Method in class edu.stanford.smi.protegex.owl.ui.menu.code.DIGAction
getName() - Method in class edu.stanford.smi.protegex.owl.ui.menu.code.EMFAction
getName() - Method in class edu.stanford.smi.protegex.owl.ui.menu.code.KazukiAction
getName() - Method in class edu.stanford.smi.protegex.owl.ui.menu.code.SourceCodeAction
getName() - Method in class edu.stanford.smi.protegex.owl.ui.menu.DublinCoreAction
getName() - Method in class edu.stanford.smi.protegex.owl.ui.menu.OWLBackwardsCompatibilityProjectFixups
getName() - Method in class edu.stanford.smi.protegex.owl.ui.menu.preferences.PreferencesAction
getName() - Method in class edu.stanford.smi.protegex.owl.ui.menu.ValidatorAction
getName() - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.alldifferent.AllDifferentAction
getName() - Method in class edu.stanford.smi.protegex.owl.ui.metrics.ShowMetricsAction
getName() - Method in class edu.stanford.smi.protegex.owl.ui.query.FindAssertionsAction
getName() - Method in class edu.stanford.smi.protegex.owl.ui.query.SPARQLOWLModelAction
getName() - Method in interface edu.stanford.smi.protegex.owl.ui.repository.action.RepositoryAction
getName() - Method in class edu.stanford.smi.protegex.owl.ui.repository.ShowRepositoryEditorAction
getName() - Method in class edu.stanford.smi.protegex.owl.ui.repository.wizard.impl.DatabaseRepositoryCreatorWizardPlugin
getName() - Method in class edu.stanford.smi.protegex.owl.ui.repository.wizard.impl.HTTPRepositoryCreatorWizardPlugin
getName() - Method in class edu.stanford.smi.protegex.owl.ui.repository.wizard.impl.LocalFileRepositoryCreatorWizardPlugin
getName() - Method in class edu.stanford.smi.protegex.owl.ui.repository.wizard.impl.LocalFolderRepositoryCreatorWizardPlugin
getName() - Method in class edu.stanford.smi.protegex.owl.ui.repository.wizard.impl.RelativeFileRepositoryCreatorWizardPlugin
getName() - Method in class edu.stanford.smi.protegex.owl.ui.repository.wizard.impl.RelativeFolderRepositoryCreatorWizardPlugin
getName() - Method in interface edu.stanford.smi.protegex.owl.ui.repository.wizard.RepositoryCreatorWizardPlugin
getName() - Method in class edu.stanford.smi.protegex.owl.ui.testing.OWLTestAction
getName() - Method in class edu.stanford.smi.protegex.owl.ui.testing.OWLTestSettingsAction
  Deprecated.
getName() - Method in class edu.stanford.smi.protegex.owl.ui.testing.ShowTodoListAction
getNamedClass(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getNamedClass() - Method in class edu.stanford.smi.protegex.owl.ui.classform.component.property.PropertyFormTableModel
getNamedClass() - Method in class edu.stanford.smi.protegex.owl.ui.classform.form.ClassForm
getNamedClassCount() - Method in class edu.stanford.smi.protegex.owl.model.util.ModelMetrics
getNamedClses(OWLModel) - Method in class edu.stanford.smi.protegex.owl.inference.util.ReasonerUtil
  Returns a collection of named classes.
getNameDocumentationWidget() - Method in class edu.stanford.smi.protegex.owl.ui.metadata.OWLMetadataWidget
  Deprecated.
getNamedOperands() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLNAryLogicalClass
getNamedOperands() - Method in interface edu.stanford.smi.protegex.owl.model.OWLNAryLogicalClass
  Gets all operands which are named classes.
getNamedReferent(OWLAnonymousClass) - Method in class edu.stanford.smi.protegex.owl.inference.util.ReasonerUtil
getNamedSubclasses() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
getNamedSubclasses(boolean) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
getNamedSubclasses() - Method in interface edu.stanford.smi.protegex.owl.model.RDFSClass
  Gets a Collection of all direct subclasses that are not anonymous.
getNamedSubclasses(boolean) - Method in interface edu.stanford.smi.protegex.owl.model.RDFSClass
  Gets the named subclasses of this class.
getNamedSuperclasses() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
getNamedSuperclasses(boolean) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
getNamedSuperclasses() - Method in interface edu.stanford.smi.protegex.owl.model.RDFSClass
  Gets a Collection of all direct superclasses that are not anonymous.
getNamedSuperclasses(boolean) - Method in interface edu.stanford.smi.protegex.owl.model.RDFSClass
  Gets the superclasses of this class.
getNameSlot() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not supported in OWL
getNamespace() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
getNamespace() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFIndividual
getNamespace() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
getNamespace() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFUntypedResource
getNameSpace(String) - Static method in class edu.stanford.smi.protegex.owl.model.NamespaceUtil
getNamespace() - Method in interface edu.stanford.smi.protegex.owl.model.RDFResource
  Gets the namespace of this resource.
getNamespace(int) - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.prefixes.PrefixesTableModel
getNamespaceForPrefix(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.ImportingOwlNamespaceManager
getNamespaceForPrefix(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLNamespaceManager
getNamespaceForPrefix(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.UnmodifiableNamespaceManager
getNamespaceForPrefix(String) - Method in interface edu.stanford.smi.protegex.owl.model.NamespaceMap
getNamespaceForPrefix(String) - Method in class edu.stanford.smi.protegex.owl.model.triplestore.impl.TripleStoreImpl
getNamespaceForPrefix(String) - Method in class edu.stanford.smi.protegex.owl.writer.xml.XMLWriterNamespaceManager
getNamespaceForResourceName(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
  Deprecated. Use `AbstractOWLModel.getNamespaceForURI(String)`
getNamespaceForResourceName(String) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
getNamespaceForURI(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getNamespaceForURI(String) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets the namespace part of a given URI.
getNamespaceFromURI(String) - Static method in class edu.stanford.smi.protegex.owl.jena.Jena
getNamespaceFromURI(URI) - Method in class edu.stanford.smi.protegex.owl.ui.triplestore.AddTripleStorePanel
getNamespaceManager() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getNamespaceManager() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets the NamespaceManager used by this knowledge base.
getNamespaceManager() - Method in class edu.stanford.smi.protegex.owl.model.triplestore.impl.TripleStoreImpl
getNamespaceManager() - Method in interface edu.stanford.smi.protegex.owl.model.triplestore.TripleStore
getNamespaceManager() - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.imports.ImportsTableModel
getNamespaceManagers() - Method in class edu.stanford.smi.protegex.owl.server.triplestore.Package
getNamespacePrefix() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
getNamespacePrefix() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFIndividual
getNamespacePrefix() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
getNamespacePrefix() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFUntypedResource
getNamespacePrefix() - Method in interface edu.stanford.smi.protegex.owl.model.RDFResource
  Gets the prefix of the namespace, i.e.
getNamespacePrefixes(NamespaceManager, String) - Static method in class edu.stanford.smi.protegex.owl.writer.rdfxml.util.Util
  Gets the namespace prefixes for the combination of a `NamespaceManager` and `XMLWriter`.
getNamespacePrefixes() - Method in class edu.stanford.smi.protegex.owl.writer.xml.DefaultXMLWriter
getNamespacePrefixes() - Method in interface edu.stanford.smi.protegex.owl.writer.xml.XMLWriter
  Gets the rdfwriter's namespace manager.
getNamespaces() - Method in class edu.stanford.smi.protegex.owl.writer.xml.XMLWriterNamespaceManager
getNamespaceWithoutSeparator(String) - Static method in class edu.stanford.smi.protegex.owl.jena.Jena
getNarrowFrameStore() - Method in class edu.stanford.smi.protegex.owl.model.triplestore.impl.TripleStoreImpl
getNarrowFrameStore() - Method in interface edu.stanford.smi.protegex.owl.model.triplestore.TripleStore
  Provides access to the internal Protege storage for low-level access.
getNavigateBackIcon() - Static method in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
getNavigateForwardIcon() - Static method in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
getNavigationHistoryManager(OWLModel) - Static method in class edu.stanford.smi.protegex.owl.ui.ProtegeUI
getNavigationMenuItems(RDFResource) - Method in class edu.stanford.smi.protegex.owl.swrl.ui.table.SWRLTable
getNavigationMenuItems(RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.classform.component.property.PropertyFormTable
getNavigationMenuItems(RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.owltable.OWLTable
getNavigationMenuItems(RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.owltable.SymbolTable
getNerdErrorIcon() - Static method in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
getNerdSmilingIcon() - Static method in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
getNestedBrowserText() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLNAryLogicalClass
getNestedBrowserText() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLRestriction
getNestedBrowserText() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLComplementClass
getNestedBrowserText() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLEnumeratedClass
getNestedBrowserText() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFSNamedClass
getNestedBrowserText() - Method in interface edu.stanford.smi.protegex.owl.model.RDFSClass
  Gets the browser text when this is embedded into a complex expression.
getNestedDisplayText(RDFSClass) - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.AbstractOWLClassDisplay
getNestedHierarchy() - Method in class edu.stanford.smi.protegex.owl.ui.cls.HierarchyPanel
getNestedNamedClasses(Set) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLCardinalityBase
getNestedNamedClasses(Set) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLLogicalClass
getNestedNamedClasses(Set) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLQuantifierRestriction
getNestedNamedClasses(Set) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLEnumeratedClass
getNestedNamedClasses(Set) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLHasValue
getNestedNamedClasses(Set) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFSNamedClass
getNestedNamedClasses(Set) - Method in interface edu.stanford.smi.protegex.owl.model.RDFSClass
  Gets all RDFSClses that are somewhere used in the expression below this.
getNestedSelectable() - Method in class edu.stanford.smi.protegex.owl.ui.cls.OWLClassesTab
getNestedSelectable() - Method in class edu.stanford.smi.protegex.owl.ui.individuals.OWLIndividualsTab
getNestedSelectable() - Method in interface edu.stanford.smi.protegex.owl.ui.navigation.NavigationHistoryTabWidget
getNestedSelectable() - Method in class edu.stanford.smi.protegex.owl.ui.properties.OWLPropertiesTab
getNewCls(Cls) - Method in class edu.stanford.smi.protegex.owl.storage.KnowledgeBaseCopier
getNewCls(Cls) - Method in class edu.stanford.smi.protegex.owl.storage.ProtegeSaver
getNewColumnIndex(MatrixColumn) - Method in class edu.stanford.smi.protegex.owl.ui.matrix.cls.ClassMatrixTableModel
getNewColumnIndex(MatrixColumn) - Method in class edu.stanford.smi.protegex.owl.ui.matrix.MatrixTableModel
getNewColumnIndex(MatrixColumn) - Method in class edu.stanford.smi.protegex.owl.ui.matrix.property.PropertyMatrixTableModel
getNewImpName() - Method in class edu.stanford.smi.protegex.owl.swrl.model.SWRLFactory
getNewInstance(Instance) - Method in class edu.stanford.smi.protegex.owl.storage.KnowledgeBaseCopier
getNewInstance(Instance) - Method in class edu.stanford.smi.protegex.owl.storage.OWL2OWLCopier
getNewName() - Method in class edu.stanford.smi.protegex.owl.ui.refactoring.RenameAcrossFilesPanel
getNewSlot(Slot) - Method in class edu.stanford.smi.protegex.owl.storage.KnowledgeBaseCopier
getNewSlot(Slot) - Method in class edu.stanford.smi.protegex.owl.storage.ProtegeSaver
getNextAnonymousResourceName() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getNextAnonymousResourceName() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets the next name that can be used to create an "anonymous" instance.
getNextAnonymousResourceName(OWLModel) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getNextAnonymousResourceNameStatic() - Static method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getNextAnonymousResourceURI(OWLModel) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getNextAvailableCloneName(OWLNamedClass) - Static method in class edu.stanford.smi.protegex.owl.model.util.CloneFactory
getNextAvailablePrefixName() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractNamespaceManager
getNextFrameNumber() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not needed
getNextPage() - Method in class edu.stanford.smi.protegex.owl.database.InitOWLDatabaseFromFileWizardPage
getNextPage() - Method in class edu.stanford.smi.protegex.owl.ui.jena.OWLFilesWizardPage
getNextPage() - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.imports.emptyimport.EmptyImportExplanationPage
getNextPage() - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.imports.emptyimport.EmptyOntologyURIPage
getNextPage() - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.imports.wizard.FileImportPage
getNextPage() - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.imports.wizard.ImportTypePage
getNextPage() - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.imports.wizard.RepositoryImportPage
getNextPage() - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.imports.wizard.URLImportPage
getNextPage() - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.OntologyURIWizardPage
getNextPage() - Method in class edu.stanford.smi.protegex.owl.ui.profiles.ProfileSelectionWizardPage
getNextToken() - Method in class edu.stanford.smi.protegex.owl.model.classparser.compact.CompactParserTokenManager
getNextToken() - Method in class edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxParser
getNextToken() - Method in class edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxParserTokenManager
getNextToken() - Method in class edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParser
getNextToken() - Method in class edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParserTokenManager
getNil() - Method in class edu.stanford.smi.protegex.owl.ui.components.rdflist.RDFListComponent
getNotKeyword() - Static method in class edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParserUtil
getNsPrefixMap() - Method in class edu.stanford.smi.protegex.owl.jena.graph.ProtegePrefixMapping
getNsPrefixURI(String) - Method in class edu.stanford.smi.protegex.owl.jena.graph.ProtegePrefixMapping
getNsURIPrefix(String) - Method in class edu.stanford.smi.protegex.owl.jena.graph.ProtegePrefixMapping
getNumberOfDirectOWLInstancesOfClass(OWLModel, String, boolean) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getNumberOfErrors() - Method in exception edu.stanford.smi.protegex.owl.inference.dig.exception.DIGErrorException
  Gets the number of DIGErrors
getNumberOfOWLIndividualsOfClass(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getNumberOfOWLIndividualsOfClass(OWLModel, String, boolean) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getNumberOfOWLPropertyValues(OWLModel, String, String, Object, boolean) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getNumberOfPropertyValues(OWLModel, String, String, boolean) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getNumberOfPropertyValues(OWLModel, URI, URI, boolean) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getNumSearchProperties() - Method in class edu.stanford.smi.protegex.owl.ui.search.finder.BasicFind
getNumSearchProperties() - Method in interface edu.stanford.smi.protegex.owl.ui.search.finder.Find
getObject() - Method in class edu.stanford.smi.protegex.owl.model.triplestore.impl.DefaultTriple
getObject() - Method in interface edu.stanford.smi.protegex.owl.model.triplestore.Triple
getObject() - Method in class edu.stanford.smi.protegex.owl.ui.components.AbstractPropertyValuesComponent
getObject(int) - Method in class edu.stanford.smi.protegex.owl.ui.components.literaltable.LiteralTableModel
getObjectProperties(OWLModel) - Method in class edu.stanford.smi.protegex.owl.inference.util.ReasonerUtil
getObjectPropertyCount() - Method in class edu.stanford.smi.protegex.owl.model.util.ModelMetrics
getObjectPropertyValue(OWLIndividual, OWLProperty) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getObjectPropertyValue(OWLModel, OWLIndividual, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getObjectPropertyValue(OWLModel, OWLIndividual, String, boolean) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getObjectPropertyValue(OWLModel, String, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getObjectPropertyValue(OWLModel, String, String, boolean) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getObjectPropertyValue(OWLModel, URI, URI, boolean) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getObjectPropertyValue(OWLModel, URI, URI) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getObjectPropertyValues(OWLModel, String, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getObjectPropertyValues(OWLModel, OWLIndividual, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getObjectPropertyValues(OWLModel, OWLIndividual, String, boolean) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getObjectPropertyValues(OWLModel, String, String, boolean) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getObjectPropertyValues(OWLModel, URI, URI, boolean) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getObjectPropertyValues(OWLModel, URI, URI) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getObjects() - Method in class edu.stanford.smi.protegex.owl.ui.components.AbstractPropertyValuesComponent
getObjects(boolean) - Method in class edu.stanford.smi.protegex.owl.ui.components.AbstractPropertyValuesComponent
getObjects() - Method in interface edu.stanford.smi.protegex.owl.ui.components.PropertyValuesComponent
getObjectToNamedLogicalClassSurrogate() - Method in class edu.stanford.smi.protegex.owl.jena.parser.GlobalParserCache
getObjectType() - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.manchester.AbstractNamedObjectCreationSuggestion
getObjectType() - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.manchester.CreateClassSuggestion
getObjectType() - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.manchester.CreateDatatypePropertySuggestion
getObjectType() - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.manchester.CreateIndividualSuggestion
getObjectType() - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.manchester.CreateObjectPropertySuggestion
getOneNamedDirectTypeWithBrowserPattern(RDFResource) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.OWLUI
  Get one named direct type for an owl individual.
getOneOf() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLDataRange
getOneOf() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLEnumeratedClass
getOneOf() - Method in interface edu.stanford.smi.protegex.owl.model.OWLDataRange
  Gets a collection of the values in this owl:DataRange.
getOneOf() - Method in interface edu.stanford.smi.protegex.owl.model.OWLEnumeratedClass
  Gets the values of the owl:oneOf property at this, i.e.
getOneOfTriples() - Method in class edu.stanford.smi.protegex.owl.jena.parser.GlobalParserCache
getOneOfValueLiterals() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLDataRange
getOneOfValueLiterals() - Method in interface edu.stanford.smi.protegex.owl.model.OWLDataRange
  Gets the values of the owl:oneOf property as RDFSLiterals.
getOneOfValues() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLDataRange
getOneOfValues() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLEnumeratedClass
getOneOfValues() - Method in interface edu.stanford.smi.protegex.owl.model.OWLDataRange
  Gets the values of the owl:oneOf property.
getOneOfValues() - Method in interface edu.stanford.smi.protegex.owl.model.OWLEnumeratedClass
  Deprecated. use getOneOf instead
getOnProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLRestriction
getOnProperty() - Method in interface edu.stanford.smi.protegex.owl.model.OWLRestriction
  Gets the Slot that is restricted by this restriction.
getOntClass(RDFSClass) - Method in class edu.stanford.smi.protegex.owl.jena.creator.JenaCreator
getOntModel() - Method in class edu.stanford.smi.protegex.owl.database.OWLDatabaseModel
getOntModel() - Method in class edu.stanford.smi.protegex.owl.jena.creator.JenaCreator
getOntModel() - Method in class edu.stanford.smi.protegex.owl.jena.JenaOWLModel
getOntModel() - Method in interface edu.stanford.smi.protegex.owl.jena.OntModelProvider
  Gets an OntModel which represents the current state.
getOntModel() - Method in class edu.stanford.smi.protegex.owl.jena.triplestore.JenaMemoryTripleWriter
getOntModel() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
getOntologies() - Method in class edu.stanford.smi.protegex.owl.repository.impl.AbstractLocalRepository
getOntologies() - Method in class edu.stanford.smi.protegex.owl.repository.impl.DatabaseRepository
getOntologies() - Method in class edu.stanford.smi.protegex.owl.repository.impl.DublinCoreDLVersionRedirectRepository
getOntologies() - Method in class edu.stanford.smi.protegex.owl.repository.impl.ForcedURLRetrievalRepository
getOntologies() - Method in class edu.stanford.smi.protegex.owl.repository.impl.FTPRepository
getOntologies() - Method in class edu.stanford.smi.protegex.owl.repository.impl.HTTPRepository
getOntologies() - Method in interface edu.stanford.smi.protegex.owl.repository.Repository
  Gets the name of the ontologies that this repository contains.
getOntologyFromTable(Class<? extends DatabaseFrameDb>, String, String, String, String, String) - Static method in class edu.stanford.smi.protegex.owl.database.DatabaseFactoryUtils
getOntologyInputSource() - Method in class edu.stanford.smi.protegex.owl.database.CreateOWLDatabaseFromFileProjectPlugin
getOntologyLocationDescription(URI) - Method in class edu.stanford.smi.protegex.owl.repository.impl.AbstractLocalRepository
getOntologyLocationDescription(URI) - Method in class edu.stanford.smi.protegex.owl.repository.impl.DatabaseRepository
getOntologyLocationDescription(URI) - Method in class edu.stanford.smi.protegex.owl.repository.impl.DublinCoreDLVersionRedirectRepository
getOntologyLocationDescription(URI) - Method in class edu.stanford.smi.protegex.owl.repository.impl.ForcedURLRetrievalRepository
getOntologyLocationDescription(URI) - Method in class edu.stanford.smi.protegex.owl.repository.impl.FTPRepository
getOntologyLocationDescription(URI) - Method in class edu.stanford.smi.protegex.owl.repository.impl.HTTPRepository
getOntologyLocationDescription(URI) - Method in interface edu.stanford.smi.protegex.owl.repository.Repository
  Gets a description of where the specified ontology is located.
getOntologyName() - Method in class edu.stanford.smi.protegex.owl.database.CreateOWLDatabaseProjectPlugin
getOntologyName() - Method in interface edu.stanford.smi.protegex.owl.database.OWLDatabasePlugin
getOntologyName(String) - Static method in class edu.stanford.smi.protegex.owl.jena.parser.OWLImportsCache
getOntologyName() - Method in class edu.stanford.smi.protegex.owl.repository.util.OntologyNameExtractor
getOntologyName(OWLModel, TripleStore) - Static method in class edu.stanford.smi.protegex.owl.writer.rdfxml.util.Util
getOntologyURI() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLOntology
getOntologyURI() - Method in interface edu.stanford.smi.protegex.owl.model.OWLOntology
  Deprecated. now getURI() can be used for that
getOntologyURI() - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.imports.emptyimport.EmptyImportWizard
getOntologyURI() - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.imports.emptyimport.EmptyOntologyURIPage
getOntologyURI() - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.imports.wizard.AbstractImportEntry
getOntologyURI() - Method in interface edu.stanford.smi.protegex.owl.ui.metadatatab.imports.wizard.ImportEntry
getOntologyURI() - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.OntologyURIPanel
getOntologyURIBase(String, boolean, boolean, boolean) - Static method in class edu.stanford.smi.protegex.owl.model.factory.FactoryUtils
getOntologyURL() - Method in class edu.stanford.smi.protegex.owl.repository.impl.HTTPRepository
getOntPolicyFilePath(Project) - Static method in class edu.stanford.smi.protegex.owl.jena.Jena
  Deprecated.
getOpenBrackets() - Static method in class edu.stanford.smi.protegex.owl.swrl.ui.icons.SWRLIcons
getOpenParenthesis() - Static method in class edu.stanford.smi.protegex.owl.swrl.ui.icons.SWRLIcons
getOpenProjectIcon() - Static method in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
getOperands() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLLogicalClass
getOperands() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLNAryLogicalClass
getOperands() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLComplementClass
getOperands() - Method in interface edu.stanford.smi.protegex.owl.model.OWLNAryLogicalClass
  Gets the classes that are combined in this logical statement.
getOperandsProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLComplementClass
getOperandsProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLIntersectionClass
getOperandsProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLUnionClass
getOperandsProperty() - Method in interface edu.stanford.smi.protegex.owl.model.OWLLogicalClass
  Gets the OWL system property that is used to store the operands of this logical class type.
getOperator() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLAllValuesFrom
getOperator() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLCardinality
getOperator() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLHasValue
getOperator() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLMaxCardinality
getOperator() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLMinCardinality
getOperator() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLSomeValuesFrom
getOperator() - Method in interface edu.stanford.smi.protegex.owl.model.OWLRestriction
  Gets the Unicode operator character that is typically used to represent this type of restriction.
getOperator() - Method in class edu.stanford.smi.protegex.owl.ui.clsproperties.NewRestrictionTreeNode
getOperator() - Method in class edu.stanford.smi.protegex.owl.ui.clsproperties.OldRestrictionTreeNode
getOperator() - Method in class edu.stanford.smi.protegex.owl.ui.clsproperties.RestrictionTreeNode
getOperatorName() - Method in class edu.stanford.smi.protegex.owl.swrl.model.impl.AbstractSWRLIndividualsAtom
getOperatorName() - Method in class edu.stanford.smi.protegex.owl.swrl.model.impl.DefaultSWRLDifferentIndividualsAtom
getOperatorName() - Method in class edu.stanford.smi.protegex.owl.swrl.model.impl.DefaultSWRLSameIndividualAtom
getOperatorName() - Method in class edu.stanford.smi.protegex.owl.ui.clsproperties.RestrictionTreeNode
getOperatorSymbol() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLComplementClass
getOperatorSymbol() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLIntersectionClass
getOperatorSymbol() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLUnionClass
getOperatorSymbol() - Method in interface edu.stanford.smi.protegex.owl.model.OWLLogicalClass
  Gets the (unicode) character used for expressions of this type.
getOrderedJavaClasses() - Static method in class edu.stanford.smi.protegex.owl.model.factory.FrameTypeId2OWLJavaClass
getOriginalXMLBase() - Method in class edu.stanford.smi.protegex.owl.model.triplestore.impl.TripleStoreImpl
getOriginalXMLBase() - Method in interface edu.stanford.smi.protegex.owl.model.triplestore.TripleStore
getOriginClass(int) - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTableModel
  Gets the class where the entry from a given row has been inherited from.
getOriginCls() - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTableItem
getOrKeyword() - Static method in class edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParserUtil
getOutputFolder() - Method in interface edu.stanford.smi.protegex.owl.emf.EMFGeneratorOptions
getOutputFolder() - Method in class edu.stanford.smi.protegex.owl.emf.ProjectBasedEMFGeneratorOptions
getOutputFolder() - Method in interface edu.stanford.smi.protegex.owl.javacode.JavaCodeGeneratorOptions
getOutputFolder() - Method in class edu.stanford.smi.protegex.owl.javacode.ProjectBasedJavaCodeGeneratorOptions
getOutputStream(URI) - Method in class edu.stanford.smi.protegex.owl.repository.impl.AbstractLocalRepository
getOutputStream(URI) - Method in class edu.stanford.smi.protegex.owl.repository.impl.DatabaseRepository
getOutputStream(URI) - Method in class edu.stanford.smi.protegex.owl.repository.impl.DublinCoreDLVersionRedirectRepository
getOutputStream(URI) - Method in class edu.stanford.smi.protegex.owl.repository.impl.ForcedURLRetrievalRepository
getOutputStream(URI) - Method in class edu.stanford.smi.protegex.owl.repository.impl.FTPRepository
getOutputStream(URI) - Method in class edu.stanford.smi.protegex.owl.repository.impl.HTTPRepository
getOutputStream(URI) - Method in interface edu.stanford.smi.protegex.owl.repository.Repository
  Gets an output stream which can be used to write changes to the specified ontology.
getOverriddenTemplateFacets(Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeCls
  Deprecated. no OWL equivalent
getOverriddenTemplateFacets(Cls, Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not supported in OWL
getOWL2RLIcon() - Static method in class edu.stanford.smi.protegex.owl.swrl.ui.icons.SWRLIcons
getOWLAllDifferentClass() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getOwlAllDifferentClass() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getOWLAllDifferentClass() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
getOWLAllDifferentClassCls() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getOWLAllDifferents() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getOWLAllDifferents() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets a collection of all OWLAllDifferents in the knowlegde base.
getOWLAllDifferents(OWLModel) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getOWLAllValuesFromClass() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getOwlAllValuesFromClass() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getOWLAllValuesFromProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getOwlAllValuesFromProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getOWLAllValuesFromSymbol() - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.compact.CompactOWLClassDisplay
getOWLAllValuesFromSymbol() - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.dl.DLSyntaxClassDisplay
getOWLAllValuesFromSymbol() - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.manchester.ManchesterOWLClassDisplay
getOWLAllValuesFromSymbol() - Method in interface edu.stanford.smi.protegex.owl.model.classdisplay.OWLClassDisplay
  Gets the keyword used for owl:allValuesFrom restrictions in this rendering.
getOWLAnnotationProperties() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getOWLAnnotationProperties() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets all annotation properties.
getOWLAnnotationProperties(OWLModel) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getOWLAnnotationPropertyClass() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getOwlAnnotationPropertyClass() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getOWLAnnotationPropertyClass() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
getOWLBackwardCompatibleWithProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getOwlBackwardCompatibleWithProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getOWLCardinalityClass() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getOwlCardinalityClass() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getOWLCardinalityProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getOwlCardinalityProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getOWLCardinalityProperty() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
getOWLCardinalitySymbol() - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.compact.CompactOWLClassDisplay
getOWLCardinalitySymbol() - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.dl.DLSyntaxClassDisplay
getOWLCardinalitySymbol() - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.manchester.ManchesterOWLClassDisplay
getOWLCardinalitySymbol() - Method in interface edu.stanford.smi.protegex.owl.model.classdisplay.OWLClassDisplay
getOWLClass(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getOWLClass(OWLModel, URI) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getOWLClass(OWLModel, String, boolean) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getOWLClass() - Method in class edu.stanford.smi.protegex.owl.ui.existential.ExistentialTreeNode
getOwlClassCount() - Method in class edu.stanford.smi.protegex.owl.model.util.ModelMetrics
getOWLClassDescription(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getOWLClassDisplay() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getOWLClassDisplay() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets the currently used renderer for classes into display strings.
getOWLClasses() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
  Deprecated. use getRDFSClasses instead
getOWLClasses(OWLModel) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getOWLClassesOfIndividual(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getOWLClassesOfIndividual(OWLModel, URI) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getOWLClassesOfIndividual(OWLModel, String, boolean) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getOWLClassesTab(Component) - Static method in class edu.stanford.smi.protegex.owl.ui.cls.OWLClassesTab
getOWLClassFromName(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.model.classparser.ParserUtils
getOWLClassFromName(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getOWLClassMetaCls() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getOwlClassMetaCls() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getOWLClassParser() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getOWLClassParser() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets the OWLClassParser for the current class expression syntax.
getOWLClsesTab() - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTable
getOWLComplementClassClass() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getOwlComplementClassClass() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getOWLComplementOfProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getOwlComplementOfProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getOWLComplementOfSymbol() - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.compact.CompactOWLClassDisplay
getOWLComplementOfSymbol() - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.dl.DLSyntaxClassDisplay
getOWLComplementOfSymbol() - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.manchester.ManchesterOWLClassDisplay
getOWLComplementOfSymbol() - Method in interface edu.stanford.smi.protegex.owl.model.classdisplay.OWLClassDisplay
getOWLDataProperty(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getOWLDataProperty(OWLModel, String, boolean) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getOWLDataPropertyFromName(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getOWLDataRangeClass() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getOwlDataRangeClass() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getOWLDataRangeClass() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets the class owl:DataRange, which is used to represent enumerations of datatype values.
getOWLDatatypeProperties(OWLModel) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getOWLDatatypeProperty(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getOWLDatatypeProperty(String) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
getOWLDatatypeProperty(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getOWLDatatypeProperty(OWLModel, URI) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getOWLDatatypePropertyClass() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getOwlDatatypePropertyClass() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getOWLDatatypePropertyClass() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets the standard metaclass of all datatype slots/properties.
getOWLDatatypePropertyFromName(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.model.classparser.ParserUtils
getOWLDatatypePropertyMetaClassCls() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getOWLDatavaluedPropertyValueAsInteger(OWLModel, OWLIndividual, String, boolean) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getOWLDatavaluedPropertyValueAsInteger(OWLModel, OWLIndividual, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getOWLDatavaluedPropertyValueAsLong(OWLModel, OWLIndividual, String, boolean) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getOWLDeprecatedClassClass() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getOwlDeprecatedClassClass() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getOWLDeprecatedClassClass() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
getOWLDeprecatedPropertyClass() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getOwlDeprecatedPropertyClass() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getOWLDifferentFromProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getOwlDifferentFromProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getOWLDifferentFromProperty() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
getOWLDifferentFromProperty(OWLModel) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getOWLDirectRangeClasses(OWLModel, String, boolean) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getOWLDirectRangeClasses(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getOWLDirectRangeClasses(OWLModel, URI) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getOWLDisjointClassProperty(OWLModel) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getOWLDisjointWithProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getOwlDisjointWithProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getOWLDisjointWithProperty() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
getOWLDisjointWithProperty(OWLModel) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getOWLDistinctMembersProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getOwlDistinctMembersProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getOWLDLOntModel() - Method in class edu.stanford.smi.protegex.owl.database.OWLDatabaseModel
getOWLDLOntModel() - Method in class edu.stanford.smi.protegex.owl.jena.JenaOWLModel
getOWLDLOntModel() - Method in interface edu.stanford.smi.protegex.owl.jena.OntModelProvider
  Gets or prepares an OntModel which is guaranteed to be in OWL DL, for classification and other reasoning tasks.
getOWLDomainClasses(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getOWLDomainClasses(OWLModel, URI) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getOWLDomainClasses(OWLModel, String, boolean) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getOWLEnumeratedClassClass() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getOwlEnumeratedClassClass() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getOWLEquivalentClassProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getOwlEquivalentClassProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getOWLEquivalentClassProperty() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
getOWLEquivalentClassProperty(OWLModel) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getOWLEquivalentPropertyProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getOwlEquivalentPropertyProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getOWLEquivalentPropertyProperty() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
getOWLEquivalentPropertyProperty(OWLModel) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getOWLFileLanguage(PropertyList) - Static method in class edu.stanford.smi.protegex.owl.jena.JenaKnowledgeBaseFactory
getOWLFileName(PropertyList) - Static method in class edu.stanford.smi.protegex.owl.jena.JenaKnowledgeBaseFactory
getOWLFilePath() - Method in class edu.stanford.smi.protegex.owl.jena.JenaFilePanel
getOWLFilePath(PropertyList) - Static method in class edu.stanford.smi.protegex.owl.jena.JenaKnowledgeBaseFactory
getOWLFilePath() - Method in class edu.stanford.smi.protegex.owl.jena.JenaOWLModel
  Gets the currently assigned file name for the top-level file of this OWLModel.
getOWLFileURI(OWLModel) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
getOWLFrameRenderer() - Method in class edu.stanford.smi.protegex.owl.ui.owltable.SymbolTable
getOWLFrameStore() - Method in class edu.stanford.smi.protegex.owl.model.framestore.OWLFrameStoreManager
getOWLFrameStore() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getOWLFrameStore() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Provides low level access to some internal Protege detail - normally not needed.
getOWLFullIcon() - Static method in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
getOWLFullModel() - Method in class edu.stanford.smi.protegex.owl.jena.creator.JenaCreator
getOWLFunctionalPropertyClass() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getOwlFunctionalPropertyClass() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getOWLFunctionalPropertyClass() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
getOWLHasValueClass() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getOwlHasValueClass() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getOWLHasValueProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getOwlHasValueProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getOWLHasValueSymbol() - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.compact.CompactOWLClassDisplay
getOWLHasValueSymbol() - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.dl.DLSyntaxClassDisplay
getOWLHasValueSymbol() - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.manchester.ManchesterOWLClassDisplay
getOWLHasValueSymbol() - Method in interface edu.stanford.smi.protegex.owl.model.classdisplay.OWLClassDisplay
getOWLIcon() - Static method in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
getOWLImportsProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getOwlImportsProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getOWLImportsURI(String) - Static method in class edu.stanford.smi.protegex.owl.jena.parser.OWLImportsCache
getOWLIncompatibleWithProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getOwlIncompatibleWithProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getOWLIndividual(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getOWLIndividual(String) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
getOWLIndividual(OWLNamedClass, boolean, int) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getOWLIndividual(OWLModel, String, boolean) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getOWLIndividual(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getOWLIndividual(OWLModel, URI) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getOwlIndividualCount() - Method in class edu.stanford.smi.protegex.owl.model.util.ModelMetrics
getOWLIndividualFromName(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.model.classparser.ParserUtils
getOWLIndividualFromName(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getOWLIndividuals() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getOWLIndividuals(boolean) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getOWLIndividuals() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets those Instances in the ontology that are instances of a OWLNamedClass.
getOWLIndividuals(boolean) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets those Instances in the ontology that are instances of a OWLNamedClass.
getOWLIndividuals(OWLModel) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getOWLIndividualsOfClass(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getOWLIndividualsOfClass(OWLModel, URI) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getOWLIndividualsOfClass(OWLNamedClass) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getOWLIntersectionClassClass() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getOwlIntersectionClassClass() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getOWLIntersectionOfProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getOwlIntersectionOfProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getOWLIntersectionOfProperty() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
getOWLIntersectionOfSymbol() - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.compact.CompactOWLClassDisplay
getOWLIntersectionOfSymbol() - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.dl.DLSyntaxClassDisplay
getOWLIntersectionOfSymbol() - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.manchester.ManchesterOWLClassDisplay
getOWLIntersectionOfSymbol() - Method in interface edu.stanford.smi.protegex.owl.model.classdisplay.OWLClassDisplay
getOWLInverseFunctionalPropertyClass() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getOwlInverseFunctionalPropertyClass() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getOWLInverseFunctionalPropertyClass() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
getOWLInverseOfProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getOwlInverseOfProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getOWLInverseOfProperty() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
getOWLInverseOfProperty(OWLModel) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getOWLJavaFactory() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getOWLJavaFactory() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets the OWLJavaFactory that is used to create the Java objects for ontology resources.
getOWLLogicalClassClass() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getOwlLogicalClassClass() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getOWLMaxCardinalityClass() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getOwlMaxCardinalityClass() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getOWLMaxCardinalityProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getOwlMaxCardinalityProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getOWLMaxCardinalityProperty() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
getOWLMaxCardinalitySymbol() - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.compact.CompactOWLClassDisplay
getOWLMaxCardinalitySymbol() - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.dl.DLSyntaxClassDisplay
getOWLMaxCardinalitySymbol() - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.manchester.ManchesterOWLClassDisplay
getOWLMaxCardinalitySymbol() - Method in interface edu.stanford.smi.protegex.owl.model.classdisplay.OWLClassDisplay
getOWLMinCardinalityClass() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getOwlMinCardinalityClass() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getOWLMinCardinalityProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getOwlMinCardinalityProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getOWLMinCardinalityProperty() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
getOWLMinCardinalitySymbol() - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.compact.CompactOWLClassDisplay
getOWLMinCardinalitySymbol() - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.dl.DLSyntaxClassDisplay
getOWLMinCardinalitySymbol() - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.manchester.ManchesterOWLClassDisplay
getOWLMinCardinalitySymbol() - Method in interface edu.stanford.smi.protegex.owl.model.classdisplay.OWLClassDisplay
getOwlModel() - Method in class edu.stanford.smi.protegex.owl.database.creator.AbstractOwlDatabaseCreator
getOWLModel() - Method in class edu.stanford.smi.protegex.owl.inference.reasoner.AbstractProtegeReasoner
getOWLModel() - Method in interface edu.stanford.smi.protegex.owl.inference.reasoner.ProtegeReasoner
  Returns the OWL model to which this reasoner is attached to.
getOWLModel() - Method in class edu.stanford.smi.protegex.owl.inference.ui.action.ClassifyTaxonomyAction
getOWLModel() - Method in interface edu.stanford.smi.protegex.owl.inference.ui.RunnableReasonerAction
getOwlModel() - Method in class edu.stanford.smi.protegex.owl.jena.creator.NewOwlProjectCreator
getOwlModel() - Method in class edu.stanford.smi.protegex.owl.jena.creator.OwlProjectFromReaderCreator
getOwlModel() - Method in class edu.stanford.smi.protegex.owl.jena.creator.OwlProjectFromStreamCreator
getOwlModel() - Method in class edu.stanford.smi.protegex.owl.jena.creator.OwlProjectFromUriCreator
getOWLModel() - Method in class edu.stanford.smi.protegex.owl.jena.parser.TripleProcessor
getOWLModel() - Method in class edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxParser
getOwlModel() - Method in class edu.stanford.smi.protegex.owl.model.factory.AbstractOwlProjectCreator
getOWLModel() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
getOWLModel() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFIndividual
getOWLModel() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
getOWLModel() - Method in interface edu.stanford.smi.protegex.owl.model.RDFResource
  Gets the OWLModel this resource is defined in.
getOWLModel() - Method in class edu.stanford.smi.protegex.owl.swrl.P3SWRLTabPluginRegistrationRecord
getOWLModel() - Method in class edu.stanford.smi.protegex.owl.ui.actions.ResourceAction
getOWLModel() - Method in class edu.stanford.smi.protegex.owl.ui.cls.OWLClassesTab
getOWLModel() - Method in class edu.stanford.smi.protegex.owl.ui.code.SymbolPanel
getOWLModel() - Method in class edu.stanford.smi.protegex.owl.ui.code.SymbolTextArea
getOWLModel() - Method in class edu.stanford.smi.protegex.owl.ui.code.SymbolTextField
getOWLModel() - Method in class edu.stanford.smi.protegex.owl.ui.components.AbstractPropertyValuesComponent
getOWLModel() - Method in class edu.stanford.smi.protegex.owl.ui.components.triples.TriplesTableModel
getOWLModel() - Method in class edu.stanford.smi.protegex.owl.ui.existential.ExistentialTreePanel
getOWLModel() - Method in class edu.stanford.smi.protegex.owl.ui.explorer.ExplorerTreePanel
getOWLModel() - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.imports.wizard.ImportWizard
getOWLModel() - Method in class edu.stanford.smi.protegex.owl.ui.owltable.SymbolTable
getOWLModel() - Method in class edu.stanford.smi.protegex.owl.ui.properties.OWLSubpropertyPane
getOWLModel() - Method in class edu.stanford.smi.protegex.owl.ui.repository.wizard.impl.RelativeURLSpecificationWizardPanel
getOWLModel() - Method in class edu.stanford.smi.protegex.owl.ui.results.ResultsPanel
getOWLModel() - Method in class edu.stanford.smi.protegex.owl.ui.subsumption.SubsumptionTreePanel
getOWLModel() - Method in class edu.stanford.smi.protegex.owl.ui.triplestore.AddTripleStorePanel
getOWLModel() - Method in class edu.stanford.smi.protegex.owl.ui.widget.AbstractPropertyWidget
getOWLModel() - Method in class edu.stanford.smi.protegex.owl.ui.widget.AbstractTabWidget
getOWLModel() - Method in interface edu.stanford.smi.protegex.owl.ui.widget.PropertyWidget
getOWLModelAction(Class) - Static method in class edu.stanford.smi.protegex.owl.ui.actions.OWLModelActionManager
getOWLModelActionClasses() - Static method in class edu.stanford.smi.protegex.owl.ui.actions.OWLModelActionManager
getOWLNamedClass(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getOWLNamedClass(String) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  A convenience method which includes the typecast after `getCls()`.
getOWLNamedClass(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getOWLNamedClass(OWLModel, URI) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getOWLNamedClass(OWLModel, String, boolean) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getOWLNamedClassClass() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getOwlNamedClassClass() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getOWLNamedClassClass() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets the standard metaclass of all named classes.
getOWLNamedClasses(OWLModel) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getOWLNamedClassMetaClassCls() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getOWLNothing() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getOWLNothing() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets the system class `owl:Nothing`, which represents the empty set for reasoners.
getOWLNothingClass() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getOwlNothingClass() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getOWLObjectProperties(OWLModel) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getOWLObjectProperty(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getOWLObjectProperty(String) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
getOWLObjectProperty(OWLModel, String, boolean) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getOWLObjectProperty(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getOWLObjectProperty(OWLModel, URI) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getOWLObjectPropertyClass() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getOwlObjectPropertyClass() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getOWLObjectPropertyClass() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets the standard metaclass of all object slots/properties.
getOWLObjectPropertyFromName(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.model.classparser.ParserUtils
getOWLObjectPropertyFromName(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getOWLObjectPropertyIndividualValue(OWLModel, OWLIndividual, String, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getOWLObjectPropertyIndividualValues(OWLModel, OWLIndividual, String, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getOWLObjectPropertyMetaClassCls() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getOWLObjectPropertyPropertyValue(OWLModel, OWLIndividual, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getOWLOneOfProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getOwlOneOfProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getOWLOneOfProperty() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets the owl:oneOf property.
getOWLOnPropertyProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getOwlOnPropertyProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getOWLOntologies() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getOWLOntologies() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets all OWLOntologies in the current model.
getOWLOntology() - Method in class edu.stanford.smi.protegex.owl.model.triplestore.impl.TripleStoreImpl
getOWLOntology() - Method in interface edu.stanford.smi.protegex.owl.model.triplestore.TripleStore
getOWLOntologyByURI(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getOWLOntologyByURI(URI) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getOWLOntologyByURI(String) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Deprecated. use #getOWLOntologyByURI(URI uri) DO NOT PASS IN THE URI OF AN UNRESOLVED IMPORT AS THIS WILL CAUSE A Class Cast Exception
getOWLOntologyByURI(URI) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets the OWLOntology with a given URI.
getOWLOntologyClass() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getOwlOntologyClass() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getOWLOntologyClass() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
getOWLOntologyCls() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getOwlOntologyPointerClass() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getOwlOntologyPointerProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getOWLOntologyPrefixesProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getOwlOntologyPrefixesProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getOWLOntologyProperties() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getOWLOntologyProperties() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets the owl:OntologyProperties defined in OWL.
getOWLPriorVersionProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getOwlPriorVersionProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getOWLProject() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getOWLProject() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets the associated OWLProject, which can be used to store project-specific settings.
getOWLPropertiesOfIndividual(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getOWLPropertiesOfIndividual(OWLModel, URI) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getOWLProperty(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getOWLProperty(String) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  A convenience method including typecast.
getOWLProperty(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getOWLProperty(OWLModel, URI) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getOWLProperty(OWLModel, String, boolean) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getOWLRangeClasses(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getOWLRangeClasses(OWLModel, URI) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getOWLResourceURIProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getOwlResourceURIProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getOWLRestrictionClass() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getOwlRestrictionClass() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getOWLRestrictionFillerText(OWLRestriction) - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.AbstractOWLClassDisplay
getOWLRestrictionMetaclasses() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getOWLRestrictionMetaclasses() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets the metaclasses of the available OWLRestriction kinds.
getOWLRestrictionsOnProperty(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getOWLRestrictionsOnProperty(RDFProperty) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets a Collection of all Restrictions that are defined on a given property.
getOWLSameAsProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getOwlSameAsProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getOWLSameAsProperty() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
getOWLSameAsProperty(OWLModel) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getOWLSomeValuesFrom(OWLModel, URI) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getOWLSomeValuesFromClass() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getOwlSomeValuesFromClass() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getOWLSomeValuesFromProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getOwlSomeValuesFromProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getOWLSomeValuesFromRestrictionClass() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getOWLSomeValuesFromRestrictionClass() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets the meta class that represents some values from restrictions.
getOWLSomeValuesFromSymbol() - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.compact.CompactOWLClassDisplay
getOWLSomeValuesFromSymbol() - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.dl.DLSyntaxClassDisplay
getOWLSomeValuesFromSymbol() - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.manchester.ManchesterOWLClassDisplay
getOWLSomeValuesFromSymbol() - Method in interface edu.stanford.smi.protegex.owl.model.classdisplay.OWLClassDisplay
getOWLSpecies() - Method in class edu.stanford.smi.protegex.owl.database.OWLDatabaseModel
getOWLSpecies(OntModel) - Static method in class edu.stanford.smi.protegex.owl.jena.Jena
getOWLSpecies() - Method in class edu.stanford.smi.protegex.owl.jena.JenaOWLModel
getOWLSpecies() - Method in interface edu.stanford.smi.protegex.owl.jena.OntModelProvider
  Gets the OWL Species of the current main OntModel.
getOWLSpeciesString(int) - Static method in class edu.stanford.smi.protegex.owl.jena.Jena
getOwlSubclassFrameStore() - Method in class edu.stanford.smi.protegex.owl.model.framestore.OWLFrameStoreManager
getOWLSymmetricPropertyClass() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getOwlSymmetricPropertyClass() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getOWLSystemFramesArray() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
  Gets the array of OWL System frames.
getOWLSystemResources() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getOWLSystemResources() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets a Collection of all system resources installed by the OWL Plugin.
getOWLTableModel() - Method in class edu.stanford.smi.protegex.owl.ui.owltable.OWLTable
getOWLTest() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.log.WarningMessageTestResult
getOWLTest() - Method in class edu.stanford.smi.protegex.owl.testing.DefaultOWLTestResult
getOWLTest(Class) - Static method in class edu.stanford.smi.protegex.owl.testing.OWLTestLibrary
getOWLTest() - Method in interface edu.stanford.smi.protegex.owl.testing.OWLTestResult
getOWLTest(Class) - Method in class edu.stanford.smi.protegex.owl.ui.testing.OWLTestSettingsTableModel
getOWLTestClass(int) - Method in class edu.stanford.smi.protegex.owl.ui.testing.OWLTestSettingsTableModel
getOWLTestClasses() - Static method in class edu.stanford.smi.protegex.owl.testing.OWLTestLibrary
getOWLTestClassName(int) - Method in class edu.stanford.smi.protegex.owl.ui.testing.OWLTestSettingsTableModel
getOWLTestErrorIcon() - Static method in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
getOWLTestResult(int) - Method in class edu.stanford.smi.protegex.owl.ui.testing.OWLTestResultsTableModel
getOWLTests() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getOWLTests() - Method in interface edu.stanford.smi.protegex.owl.testing.OWLTestManager
getOWLTests() - Method in class edu.stanford.smi.protegex.owl.ui.query.FindAssertionsAction
getOWLTests() - Method in class edu.stanford.smi.protegex.owl.ui.testing.AbstractOWLTestAction
getOWLTests() - Method in class edu.stanford.smi.protegex.owl.ui.testing.ShowTodoListAction
getOWLTestWarningIcon() - Static method in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
getOWLThingClass() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getOwlThingClass() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getOWLThingClass() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets the root class of the OWL class hierarchy (owl:Thing).
getOWLThingClass(OWLModel) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getOWLToolTipGenerator() - Static method in class edu.stanford.smi.protegex.owl.ui.widget.OWLUI
getOWLToolTipText(RDFSClass) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.OWLUI
getOWLToolTipText(RDFResource) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.OWLUI
getOWLTransitivePropertyClass() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getOwlTransitivePropertyClass() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getOWLUnionClassClass() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getOwlUnionClassClass() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getOWLUnionOfProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getOwlUnionOfProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getOWLUnionOfProperty() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
getOWLUnionOfSymbol() - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.compact.CompactOWLClassDisplay
getOWLUnionOfSymbol() - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.dl.DLSyntaxClassDisplay
getOWLUnionOfSymbol() - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.manchester.ManchesterOWLClassDisplay
getOWLUnionOfSymbol() - Method in interface edu.stanford.smi.protegex.owl.model.classdisplay.OWLClassDisplay
getOWLValuesFromProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getOwlValuesFromProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getOWLValuesFromProperty() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets the owl:valuesFrom property (used for qualified cardinality restrictions.
getOWLValueType(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getOWLValueType(String) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets the Protege ValueType that represents a given URI string.
getOWLVersionInfoProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getOwlVersionInfoProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getOWLVersionInfoProperty() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
getOWLWidgetMetadata(String) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.OWLWidgetMapper
getOWLWizard() - Method in class edu.stanford.smi.protegex.owl.ui.wizard.OWLWizardPage
getOwner() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLAnonymousClass
getOwner() - Method in interface edu.stanford.smi.protegex.owl.model.OWLAnonymousClass
  Gets the named class where this is attached to (directly or indirectly as part of a nested expression).
GetOwnerForAnonymousClassJob - Class in edu.stanford.smi.protegex.owl.model.impl
GetOwnerForAnonymousClassJob(KnowledgeBase, OWLAnonymousClass) - Constructor for class edu.stanford.smi.protegex.owl.model.impl.GetOwnerForAnonymousClassJob
getOwnFacetValue(Slot, Facet) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeInstance
  Deprecated. no OWL equivalent
getOwnFacetValues(Slot, Facet) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeInstance
  Deprecated. no OWL equivalent
getOwnSlotAllowsMultipleValues(Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeInstance
  Deprecated. not needed
getOwnSlotAllowsMultipleValues(Frame, Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not needed
getOwnSlotAndSubslotValues(Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeInstance
  Deprecated. not needed
getOwnSlotAndSubslotValues(Frame, Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
getOwnSlotDefaultValues(Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeInstance
  Deprecated. not needed
getOwnSlotDefaultValues(Frame, Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not supported in OWL
getOwnSlotFacets(Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeInstance
  Deprecated. not needed
getOwnSlotFacets(Frame, Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not supported in OWL
getOwnSlotFacetValues(Slot, Facet) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeInstance
  Deprecated. not needed
getOwnSlotFacetValues(Frame, Slot, Facet) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not supported in OWL
getOwnSlots() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeInstance
  Deprecated. replaced but includes subproperties!
getOwnSlots(Frame) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
getOwnSlotValue(Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeInstance
  Deprecated.
getOwnSlotValue(Frame, Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
getOwnSlotValueCount(Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeInstance
  Deprecated.
getOwnSlotValueCount(Frame, Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
getOwnSlotValues(Frame, Slot) - Method in class edu.stanford.smi.protegex.owl.model.framestore.LocalClassificationFrameStore
getOwnSlotValues(Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeInstance
  Deprecated.
getOwnSlotValues(Frame, Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
getOwnSlotValueType(Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeInstance
  Deprecated. not needed
getOwnSlotValueType(Frame, Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not needed
getPackage() - Method in interface edu.stanford.smi.protegex.owl.emf.EMFGeneratorOptions
getPackage() - Method in class edu.stanford.smi.protegex.owl.emf.ProjectBasedEMFGeneratorOptions
getPackage() - Method in interface edu.stanford.smi.protegex.owl.javacode.JavaCodeGeneratorOptions
getPackage() - Method in class edu.stanford.smi.protegex.owl.javacode.ProjectBasedJavaCodeGeneratorOptions
GetPackage - Class in edu.stanford.smi.protegex.owl.server.triplestore
GetPackage(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.server.triplestore.GetPackage
getPackage() - Method in class edu.stanford.smi.protegex.owl.ui.jena.JenaSchemagenPanel
getPackage() - Method in class edu.stanford.smi.protegex.owl.ui.menu.code.KazukiPanel
getPalConstraintCls() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getPalDescriptionSlot() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getPalNameSlot() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getPalRangeSlot() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getPalStatementSlot() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getParent() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.log.ReasonerLogRecord
getParentNode() - Method in class edu.stanford.smi.protegex.owl.ui.clsproperties.RestrictionTreeNode
getParsableExpression() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
getParsableExpression() - Method in interface edu.stanford.smi.protegex.owl.model.RDFSClass
  Deprecated. not needed anymore
getParseableString(String) - Static method in class edu.stanford.smi.protegex.owl.model.classparser.compact.CompactParserUtil
getParseableString(String) - Static method in class edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxParserUtil
getParseableString(String) - Static method in class edu.stanford.smi.protegex.owl.ui.code.OWLTextFormatter
  Deprecated. Moved to CompactParserUtil - this method is no longer needed as it will be called by the parser on the fly
getParsedTripleStores() - Method in class edu.stanford.smi.protegex.owl.jena.parser.GlobalParserCache
getParser() - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.compact.CompactOWLClassDisplay
getParser() - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.dl.DLSyntaxClassDisplay
getParser() - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.manchester.ManchesterOWLClassDisplay
getParser() - Method in interface edu.stanford.smi.protegex.owl.model.classdisplay.OWLClassDisplay
  Gets the associated parser that allows users to enter class expressions in the defined rendering.
getParserErrors(OWLModel) - Static method in class edu.stanford.smi.protegex.owl.jena.parser.ProtegeOWLParser
getParserErrors() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getParseTypeCollectionProperties() - Static method in class edu.stanford.smi.protegex.owl.jena.protege2jena.Protege2Jena
getPassword() - Method in class edu.stanford.smi.protegex.owl.database.CreateOWLDatabaseProjectPlugin
getPassword() - Method in class edu.stanford.smi.protegex.owl.database.creator.AbstractOwlDatabaseCreator
getPassword() - Method in interface edu.stanford.smi.protegex.owl.database.OWLDatabasePlugin
getPassword() - Method in class edu.stanford.smi.protegex.owl.repository.impl.DatabaseRepository
getPassword() - Method in interface edu.stanford.smi.protegex.owl.repository.impl.FTPRepositoryPasswordProvider
getPasteIcon() - Static method in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
getPath(RDFProperty, List) - Method in class edu.stanford.smi.protegex.owl.ui.properties.OWLSubpropertyPane
getPathName(File) - Method in class edu.stanford.smi.protegex.owl.ui.repository.wizard.impl.FileBrowserPanel
getPathsToRoot(Cls) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
  Gets all paths from a given class to the root.
getPathsToRoot(OWLNamedClass) - Method in class edu.stanford.smi.protegex.owl.ui.subsumption.SubsumptionTreePanel
getPathsToRoot(RDFResource) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.OWLUI
  Computes all paths from a resource to the root node (owl:Thing) by navigating the direct-superclasses slot.
getPathsToRoot(RDFResource, Slot) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.OWLUI
  Computes all paths from a resource to the root node (owl:Thing) by navigating on the navigationSlot.
getPathsToRoot(RDFResource, Slot, Class) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.OWLUI
  Computes all paths from a resource to the root node (owl:Thing) by navigating on the navigationSlot.
getPathToRoot(OWLNamedClass) - Method in class edu.stanford.smi.protegex.owl.ui.subsumption.SubsumptionTreePanel
getPattern() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFSDatatype
getPattern() - Method in interface edu.stanford.smi.protegex.owl.model.RDFSDatatype
  Gets the value of the xsd:pattern facet of this (user-defined) datatype.
getPlainValue() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFSLiteral
getPlainValue() - Method in interface edu.stanford.smi.protegex.owl.model.RDFSLiteral
  If the datatype of this is one of the default datatypes, which can be optimized by Protege, then this returns an optimized value.
getPlainValueIfPossible(Object) - Static method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFSLiteral
getPlugin() - Method in class edu.stanford.smi.protegex.owl.ui.jena.AbstractOWLFilesWizardPage
getPluginFolder() - Static method in class edu.stanford.smi.protegex.owl.ProtegeOWL
  Gets the plugin folder, which is the subfolder plugins/edu.stanford.smi.protegex.owl of the application's starting directory.
getPluginIcon() - Method in class edu.stanford.smi.protegex.owl.swrl.P3SWRLTabPluginRegistrationRecord
getPluginName() - Method in class edu.stanford.smi.protegex.owl.swrl.P3SWRLTabPluginRegistrationRecord
getPlugins() - Method in class edu.stanford.smi.protegex.owl.ui.repository.wizard.RepositoryWizard
getPopupMenu() - Method in class edu.stanford.smi.protegex.owl.ui.actions.FrameListPopupMenuMouseListener
getPopupMenu() - Method in class edu.stanford.smi.protegex.owl.ui.clsproperties.PropertyRestrictionsTree
getPopupMenu() - Method in class edu.stanford.smi.protegex.owl.ui.properties.OWLSubpropertyPane
getPossibleGCIPredicates() - Method in class edu.stanford.smi.protegex.owl.jena.parser.GlobalParserCache
getPossibleInverses() - Method in class edu.stanford.smi.protegex.owl.ui.properties.OWLInversePropertyWidget
getPossibleOWLPropertiesOfIndividual(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getPossibleRDFProperties() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
getPossibleRDFProperties() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFIndividual
getPossibleRDFProperties() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
getPossibleRDFProperties(RDFResource) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
getPossibleRDFProperties() - Method in interface edu.stanford.smi.protegex.owl.model.RDFResource
  Gets a Collection of all RDFProperties that this resource could take values for.
getPotentialIconName(Frame) - Static method in class edu.stanford.smi.protegex.owl.ui.ProtegeUI
getPotentiallyDisjointSubclasses(OWLNamedClass) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
getPredefinedProfile(OWLModel) - Static method in class edu.stanford.smi.protegex.owl.ui.profiles.ProfilesManager
getPredicate() - Method in class edu.stanford.smi.protegex.owl.model.triplestore.impl.DefaultTriple
getPredicate() - Method in class edu.stanford.smi.protegex.owl.model.triplestore.impl.DefaultTuple
getPredicate() - Method in interface edu.stanford.smi.protegex.owl.model.triplestore.Tuple
getPredicate(int) - Method in class edu.stanford.smi.protegex.owl.swrl.ui.table.SWRLTableModel
getPredicate(int) - Method in class edu.stanford.smi.protegex.owl.ui.classform.component.property.PropertyFormTableModel
getPredicate(int) - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.DisjointClassesTableModel
getPredicate(int) - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.PropertiesDefinitionTableModel
getPredicate(int) - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.PropertiesSuperclassesTableModel
getPredicate() - Method in class edu.stanford.smi.protegex.owl.ui.components.AbstractPropertyValuesComponent
getPredicate() - Method in class edu.stanford.smi.protegex.owl.ui.components.literaltable.LiteralTableModel
getPredicate() - Method in class edu.stanford.smi.protegex.owl.ui.components.multiresource.MultiResourceListModel
getPredicate() - Method in interface edu.stanford.smi.protegex.owl.ui.components.PropertyValuesComponent
getPredicate(int) - Method in class edu.stanford.smi.protegex.owl.ui.components.triples.TriplesTableModel
getPredicate(int) - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTableModel
getPredicate(int) - Method in interface edu.stanford.smi.protegex.owl.ui.owltable.SymbolTableModel
getPreferencesIcon() - Static method in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
getPreferredHeight(int) - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.manchester.ManchesterOWLTextPane
getPreferredRowHeight(JTable, SymbolEditorComponent) - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTable
getPreferredRowHeight(JTable, SymbolEditorComponent) - Method in class edu.stanford.smi.protegex.owl.ui.owltable.SymbolTable
getPreferredSize() - Method in class edu.stanford.smi.protegex.owl.swrl.ui.code.SWRLSymbolPanel
getPreferredSize() - Method in class edu.stanford.smi.protegex.owl.ui.classform.component.property.PropertyFormComponent
getPreferredSize() - Method in class edu.stanford.smi.protegex.owl.ui.metadata.RDFResourceNameWidget
  Deprecated.
getPreferredSize() - Method in class edu.stanford.smi.protegex.owl.ui.metrics.lang.DLNamePanel
getPreferredSize() - Method in class edu.stanford.smi.protegex.owl.ui.metrics.MetricsPanel
getPreferredSize() - Method in class edu.stanford.smi.protegex.owl.ui.owltable.SymbolTable
getPreferredSize() - Method in class edu.stanford.smi.protegex.owl.ui.repository.RepositoryManagerPanel
getPreferredSize() - Method in class edu.stanford.smi.protegex.owl.ui.repository.wizard.SelectRepositoryTypeWizardPage
getPreferredSize() - Method in class edu.stanford.smi.protegex.owl.ui.resourcedisplay.InstanceNameEditor
getPreferredSize() - Method in class edu.stanford.smi.protegex.owl.ui.resourcedisplay.ResourceDisplay
getPreferredSize() - Method in class edu.stanford.smi.protegex.owl.ui.search.finder.FindResultsTableView
getPrefix(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.ImportingOwlNamespaceManager
getPrefix(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLNamespaceManager
getPrefix(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.UnmodifiableNamespaceManager
getPrefix(String) - Method in interface edu.stanford.smi.protegex.owl.model.NamespaceMap
getPrefix(String) - Method in class edu.stanford.smi.protegex.owl.model.triplestore.impl.TripleStoreImpl
getPrefix(int) - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.prefixes.PrefixesTableModel
getPrefix() - Method in class edu.stanford.smi.protegex.owl.ui.triplestore.AddTripleStorePanel
getPrefixedName() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
getPrefixedName() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFIndividual
getPrefixedName() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
getPrefixedName(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.model.NamespaceUtil
getPrefixedName(NamespaceManager, String) - Static method in class edu.stanford.smi.protegex.owl.model.NamespaceUtil
getPrefixedName() - Method in interface edu.stanford.smi.protegex.owl.model.RDFResource
  Gets the qualified name as a namespace, local name pair (e.g.
getPrefixedName(String, TripleStore) - Static method in class edu.stanford.smi.protegex.owl.writer.rdfxml.util.Util
getPrefixes() - Method in class edu.stanford.smi.protegex.owl.model.impl.ImportingOwlNamespaceManager
getPrefixes() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLNamespaceManager
getPrefixes() - Method in class edu.stanford.smi.protegex.owl.model.impl.UnmodifiableNamespaceManager
getPrefixes() - Method in interface edu.stanford.smi.protegex.owl.model.NamespaceMap
getPrefixes() - Method in class edu.stanford.smi.protegex.owl.model.triplestore.impl.TripleStoreImpl
getPrefixes() - Method in class edu.stanford.smi.protegex.owl.writer.xml.XMLWriterNamespaceManager
getPrefixForNamespace(String) - Method in class edu.stanford.smi.protegex.owl.writer.xml.XMLWriterNamespaceManager
getPrefixForResourceName(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getPrefixForResourceName(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.model.NamespaceUtil
getPrefixForResourceName(String) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
getPrefixForResourceName(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getPrefixLength() - Method in class edu.stanford.smi.protegex.owl.ui.resourceselection.ResourceFilterListModel
getPrefixMapping() - Method in class edu.stanford.smi.protegex.owl.jena.graph.ProtegeGraph
getPrefixMode() - Method in interface edu.stanford.smi.protegex.owl.javacode.JavaCodeGeneratorOptions
getPrefixMode() - Method in class edu.stanford.smi.protegex.owl.javacode.ProjectBasedJavaCodeGeneratorOptions
getPrice() - Method in class edu.stanford.smi.protegex.owlx.examples.javaDemo.model.impl.DefaultProduct
getPrice() - Method in interface edu.stanford.smi.protegex.owlx.examples.javaDemo.model.Product
getPriceProperty() - Method in class edu.stanford.smi.protegex.owlx.examples.javaDemo.model.impl.DefaultProduct
getPriceProperty() - Method in interface edu.stanford.smi.protegex.owlx.examples.javaDemo.model.Product
getPrimitiveClassCount() - Method in class edu.stanford.smi.protegex.owl.model.util.ModelMetrics
getPrimitiveClsIcon() - Static method in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
getPriority() - Method in class edu.stanford.smi.protegex.owl.ui.actions.ResourceAction
  Gets an (optional) integer that can be used to control the order of actions in a menu.
getPriority() - Method in class edu.stanford.smi.protegex.owl.ui.cls.CreateSubclassAction
getPriorVersions() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLOntology
getPriorVersions() - Method in interface edu.stanford.smi.protegex.owl.model.OWLOntology
getProbeClassSlotName() - Static method in class edu.stanford.smi.protegex.owl.model.ProtegeNames
getProcessImports() - Method in class edu.stanford.smi.protegex.owl.jena.creator.JenaCreator
getProduct() - Method in class edu.stanford.smi.protegex.owlx.examples.javaDemo.model.impl.DefaultPurchase
getProduct() - Method in interface edu.stanford.smi.protegex.owlx.examples.javaDemo.model.Purchase
getProductClass() - Method in class edu.stanford.smi.protegex.owlx.examples.javaDemo.model.MyFactory
getProductProperty() - Method in class edu.stanford.smi.protegex.owlx.examples.javaDemo.model.impl.DefaultPurchase
getProductProperty() - Method in interface edu.stanford.smi.protegex.owlx.examples.javaDemo.model.Purchase
getProfile(OWLModel) - Static method in class edu.stanford.smi.protegex.owl.ui.profiles.ProfilesManager
getProfileOntModel(OWLModel) - Static method in class edu.stanford.smi.protegex.owl.ui.profiles.ProfilesManager
getProfileOntModel(String) - Static method in class edu.stanford.smi.protegex.owl.ui.profiles.ProfilesManager
getProgress() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.AbstractReasonerTask
getProgress() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.AbstractReasonerTask
getProgress() - Method in interface edu.stanford.smi.protegex.owl.inference.protegeowl.task.ReasonerTask
  Gets the current progress of a task.
getProgressDisplay() - Method in class edu.stanford.smi.protegex.owl.model.DefaultTaskManager
getProgressDisplay() - Method in interface edu.stanford.smi.protegex.owl.model.TaskManager
getProgressMax() - Method in class edu.stanford.smi.protegex.owl.model.AbstractTask
getProgressMax() - Method in interface edu.stanford.smi.protegex.owl.model.Task
  Gets the maximum progress value for this task.
getProgressMin() - Method in class edu.stanford.smi.protegex.owl.model.AbstractTask
getProgressMin() - Method in interface edu.stanford.smi.protegex.owl.model.Task
  Gets the minimum progress value for this task.
getProject() - Method in class edu.stanford.smi.protegex.owl.database.creator.AbstractOwlDatabaseCreator
getProject() - Method in class edu.stanford.smi.protegex.owl.jena.creator.NewOwlProjectCreator
getProject() - Method in class edu.stanford.smi.protegex.owl.jena.creator.OwlProjectFromReaderCreator
getProject() - Method in class edu.stanford.smi.protegex.owl.jena.creator.OwlProjectFromStreamCreator
getProject() - Method in class edu.stanford.smi.protegex.owl.jena.creator.OwlProjectFromUriCreator
getProject() - Method in class edu.stanford.smi.protegex.owl.model.factory.AbstractOwlProjectCreator
getProject() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeInstance
getProject() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Gets the Protege project of this.
getProject() - Method in class edu.stanford.smi.protegex.owl.ui.cls.AssertedClassesPanel
getProjectFilePath() - Method in class edu.stanford.smi.protegex.owl.database.OWLDatabaseKnowledgeBaseFactory
getProjectFilePath() - Method in class edu.stanford.smi.protegex.owl.jena.JenaKnowledgeBaseFactory
getProjectInstance(KnowledgeBase) - Static method in class edu.stanford.smi.protegex.owl.ui.menu.OWLBackwardsCompatibilityProjectFixups
getProjectListener() - Method in class edu.stanford.smi.protegex.owl.inference.dig.DefaultProtegeDIGReasoner
  MANAGEMENT STUFF
getProjectListener() - Method in class edu.stanford.smi.protegex.owl.inference.reasoner.AbstractProtegeReasoner
getProjectPath() - Method in class edu.stanford.smi.protegex.owl.jena.JenaKnowledgeBaseSourcesEditor
getProjectPath() - Method in class edu.stanford.smi.protegex.owl.ui.jena.AbstractOWLFilesWizardPage
getProjectRepositories() - Method in class edu.stanford.smi.protegex.owl.repository.RepositoryManager
getProjectView(Component) - Static method in class edu.stanford.smi.protegex.owl.ui.ProtegeUI
getProjectView(OWLModel) - Static method in class edu.stanford.smi.protegex.owl.ui.ProtegeUI
getProjectView(Project) - Static method in class edu.stanford.smi.protegex.owl.ui.ProtegeUI
getPropertDomainCount() - Method in class edu.stanford.smi.protegex.owl.model.util.ModelMetrics
getProperties(OWLModel) - Method in class edu.stanford.smi.protegex.owl.inference.util.ReasonerUtil
getPropertiesIcon() - Static method in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
getProperty(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getProperty() - Method in class edu.stanford.smi.protegex.owl.ui.classform.component.property.PropertyFormTableModel
getProperty() - Method in class edu.stanford.smi.protegex.owl.ui.matrix.cls.ExistentialMatrixColumn
getPropertyCodes(boolean) - Method in class edu.stanford.smi.protegex.owl.javacode.RDFSClassCode
getPropertyCount() - Method in class edu.stanford.smi.protegex.owl.model.util.ModelMetrics
getPropertyListener() - Method in class edu.stanford.smi.protegex.owl.inference.reasoner.AbstractProtegeReasoner
getPropertyPredicate() - Method in class edu.stanford.smi.protegex.owl.swrl.model.impl.DefaultSWRLDatavaluedPropertyAtom
getPropertyPredicate() - Method in class edu.stanford.smi.protegex.owl.swrl.model.impl.DefaultSWRLIndividualPropertyAtom
getPropertyPredicate() - Method in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLDatavaluedPropertyAtom
getPropertyPredicate() - Method in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLIndividualPropertyAtom
getPropertyPredicateProperty() - Method in class edu.stanford.smi.protegex.owl.swrl.SWRLSystemFrames
getPropertyRangeCount() - Method in class edu.stanford.smi.protegex.owl.model.util.ModelMetrics
getPropertyRangeTagName(RDFSDatatype) - Method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DIGDataTypes
  Gets the XML DIG Document element tag name that is used to specify the range of a datatype property for the specified value type.
getPropertyTreeNodes() - Method in class edu.stanford.smi.protegex.owl.ui.clsproperties.PropertyRestrictionsTree
getPropertyValue(Resource, Property) - Static method in class edu.stanford.smi.protegex.owl.jena.Jena
getPropertyValue(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
getPropertyValue(RDFProperty, boolean) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
getPropertyValue(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFIndividual
getPropertyValue(RDFProperty, boolean) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFIndividual
getPropertyValue(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
getPropertyValue(RDFProperty, boolean) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
getPropertyValue(RDFResource, RDFProperty, boolean) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
getPropertyValue(RDFProperty) - Method in interface edu.stanford.smi.protegex.owl.model.RDFResource
  Gets all (direct) values of a given property.
getPropertyValue(RDFProperty, boolean) - Method in interface edu.stanford.smi.protegex.owl.model.RDFResource
  Gets all values of a given property, and optionally its subproperties.
getPropertyValueAs(RDFProperty, Class) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
getPropertyValueAs(RDFProperty, Class) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFIndividual
getPropertyValueAs(RDFProperty, Class) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
getPropertyValueAs(RDFResource, RDFProperty, Class) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
getPropertyValueAs(RDFProperty, Class) - Method in interface edu.stanford.smi.protegex.owl.model.RDFResource
getPropertyValueCount(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
getPropertyValueCount(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFIndividual
getPropertyValueCount(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
getPropertyValueCount(RDFResource, RDFProperty) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
getPropertyValueCount(RDFProperty) - Method in interface edu.stanford.smi.protegex.owl.model.RDFResource
  Gets the number of all (direct) values of a given property.
getPropertyValueListener() - Method in class edu.stanford.smi.protegex.owl.inference.reasoner.AbstractProtegeReasoner
getPropertyValueLiteral(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
getPropertyValueLiteral(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFIndividual
getPropertyValueLiteral(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
getPropertyValueLiteral(RDFResource, RDFProperty) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
getPropertyValueLiteral(RDFProperty) - Method in interface edu.stanford.smi.protegex.owl.model.RDFResource
  Gets the first value of a given property as an RDFSLiteral.
getPropertyValueLiterals(RDFResource, RDFProperty) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getPropertyValueLiterals(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
getPropertyValueLiterals(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFIndividual
getPropertyValueLiterals(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
getPropertyValueLiterals(RDFResource, RDFProperty) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
getPropertyValueLiterals(RDFProperty) - Method in interface edu.stanford.smi.protegex.owl.model.RDFResource
  Gets all (direct) values of a given property at this as RDFSLiterals.
getPropertyValueRow(RDFProperty, Object) - Method in class edu.stanford.smi.protegex.owl.ui.components.triples.TriplesTableModel
getPropertyValues(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
getPropertyValues(RDFProperty, boolean) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
getPropertyValues(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFIndividual
getPropertyValues(RDFProperty, boolean) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFIndividual
getPropertyValues(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
getPropertyValues(RDFProperty, boolean) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
getPropertyValues(RDFResource, RDFProperty, boolean) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
getPropertyValues(RDFProperty) - Method in interface edu.stanford.smi.protegex.owl.model.RDFResource
  Gets all (direct) values of a given property at this resource.
getPropertyValues(RDFProperty, boolean) - Method in interface edu.stanford.smi.protegex.owl.model.RDFResource
  Gets all values of a given property, optionally including the values of the subproperties of the property.
getPropertyValues(RDFResource, RDFProperty) - Method in class edu.stanford.smi.protegex.owl.model.triplestore.impl.TripleStoreModelImpl
getPropertyValues(RDFResource, RDFProperty) - Method in interface edu.stanford.smi.protegex.owl.model.triplestore.TripleStoreModel
  A low-level access method to access property values while the usual API methods are in an invalid state.
getPropertyValues(RDFResource, RDFProperty) - Method in class edu.stanford.smi.protegex.owl.server.triplestore.ClientTripleStoreModel
getPropertyValuesAs(RDFProperty, Class) - Method in class edu.stanford.smi.protegex.owl.javacode.AbstractCodeGeneratorIndividual
getPropertyValuesAs(RDFProperty, Class) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
getPropertyValuesAs(RDFProperty, Class) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFIndividual
getPropertyValuesAs(RDFProperty, Class) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
getPropertyValuesAs(RDFResource, RDFProperty, Class) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
getPropertyValuesAs(RDFProperty, Class) - Method in interface edu.stanford.smi.protegex.owl.model.RDFResource
getPropertyValueValidator() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getPropertyValueValidator() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets the currently used PropertyValueValidator.
getProseAsString(RDFSClass) - Static method in class edu.stanford.smi.protegex.owl.prose.ProseGen
getProseAsString(RDFSClass, boolean) - Static method in class edu.stanford.smi.protegex.owl.prose.ProseGen
getProseFromCls(RDFSClass) - Static method in class edu.stanford.smi.protegex.owl.prose.ProseGen
getProtegeAllowedParentProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getProtegeAllowedParentProperty() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets the property protege:allowedParent (if it exists)
getProtegeClassificationStatusProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getProtegeClassificationStatusProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getProtegeClassificationStatusProperty() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets the property that is used internally to store the classification status of a class.
getProtegeInferredSubclassesProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getProtegeInferredSubclassesProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getProtegeInferredSubclassesProperty() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
getProtegeInferredSuperclassesProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getProtegeInferredSuperclassesProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getProtegeInferredSuperclassesProperty() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
getProtegeInferredTypeProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getProtegeInferredTypeProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getProtegeName() - Method in enum edu.stanford.smi.protegex.owl.swrl.model.factory.SWRLFrameTypeId
getProtegeOWLReasoner() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.AbstractSingleConceptWithConceptCollectionResultTask
getProtegeReadOnlyProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getProtegeReadOnlyProperty() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  The Protege readOnly property has a special behavior required by NCI.
getProtegeReasoner(OWLModel) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.ReasonerManager
getProtegeReasoner() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.AbstractSingleConceptWithConceptCollectionResultTask
getProtegeSubclassesDisjointProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getProtegeSubclassesDisjointProperty() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
getProtegeType() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
getProtegeType() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFIndividual
getProtegeType() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
getProtegeType() - Method in interface edu.stanford.smi.protegex.owl.model.RDFResource
  Gets the first asserted type of this resource.
getProtegeTypes() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
getProtegeTypes() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFIndividual
getProtegeTypes() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
getProtegeTypes() - Method in interface edu.stanford.smi.protegex.owl.model.RDFResource
  Gets the asserted types of this resource.
getPrototypeTriples() - Method in class edu.stanford.smi.protegex.owl.ui.cls.ClassTree
getPrototypeTriples() - Method in class edu.stanford.smi.protegex.owl.ui.components.multiresource.MultiResourceList
getPrototypeTriples() - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTable
getPrototypeTriples() - Method in class edu.stanford.smi.protegex.owl.ui.individuals.InstancesList
getPrototypeTriples() - Method in class edu.stanford.smi.protegex.owl.ui.owltable.SymbolTable
getPrototypeTriples() - Method in interface edu.stanford.smi.protegex.owl.ui.TripleSelectable
  Gets triples with an empty object or subject, indicating the typical values of this.
getPurchaseClass() - Method in class edu.stanford.smi.protegex.owlx.examples.javaDemo.model.MyFactory
getPurchases() - Method in interface edu.stanford.smi.protegex.owlx.examples.javaDemo.model.Customer_
getPurchases() - Method in class edu.stanford.smi.protegex.owlx.examples.javaDemo.model.impl.DefaultCustomer_
getPurchasesProperty() - Method in interface edu.stanford.smi.protegex.owlx.examples.javaDemo.model.Customer_
getPurchasesProperty() - Method in class edu.stanford.smi.protegex.owlx.examples.javaDemo.model.impl.DefaultCustomer_
getPurchasesSum() - Method in interface edu.stanford.smi.protegex.owlx.examples.javaDemo.model.Customer
  Computes the sum of all products that were purchased by this Customer.
getPurchasesSum() - Method in class edu.stanford.smi.protegex.owlx.examples.javaDemo.model.impl.DefaultCustomer
getPureSuperclasses() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
getPureSuperclasses() - Method in interface edu.stanford.smi.protegex.owl.model.RDFSClass
  Gets the subset of those direct superclasses which are not at the same time equivalent classes (or operands of equivalent intersection classes).
getQualifier() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLCardinalityBase
getQualifier() - Method in interface edu.stanford.smi.protegex.owl.model.OWLCardinalityBase
  Gets the qualifier class.
getQuantifierClsClses(RDFSClass) - Method in class edu.stanford.smi.protegex.owl.model.framestore.updater.QuantifierRestrictionUpdater
getQueryIcon() - Static method in class edu.stanford.smi.protegex.owl.swrl.ui.icons.SQWRLIcons
getQueryResults() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.AbstractSingleConceptWithConceptCollectionResultTask
  This method must be implemented by concrete subclasses.
getQueryResults() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.GetAncestorConceptsTask
getQueryResults() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.GetDescendantConceptsTask
getQueryResults() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.GetEquivalentConceptsTask
getQueryResults() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.GetSubConceptsTask
getQueryResults() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.GetSuperConceptsTask
getQueryText() - Method in class edu.stanford.smi.protegex.owl.ui.query.SPARQLQueryPanel
getRange() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
getRange(boolean) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
getRange() - Method in interface edu.stanford.smi.protegex.owl.model.RDFProperty
  Equivalent to `getRange(false)`.
getRange(boolean) - Method in interface edu.stanford.smi.protegex.owl.model.RDFProperty
  Gets the range defined at this.
getRangeDatatype() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
getRangeDatatype() - Method in interface edu.stanford.smi.protegex.owl.model.RDFProperty
  Gets the direct or inherited RDFSDatatype of this.
getRanges(boolean) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
getRanges(boolean) - Method in interface edu.stanford.smi.protegex.owl.model.RDFProperty
  Gets all range definitions at this (or optionally its superproperties).
getRangeUpdateFrameStore() - Method in class edu.stanford.smi.protegex.owl.model.framestore.OWLFrameStoreManager
getRawValue() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFSLiteral
getRawValue(String, RDFSDatatype) - Static method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFSLiteral
getRawValue(String, String) - Static method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFSLiteral
getRawValue() - Method in interface edu.stanford.smi.protegex.owl.model.RDFSLiteral
getRDFAltClass() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getRdfAltClass() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getRDFBagClass() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getRdfBagClass() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getRDFDatatype() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLDataRange
getRDFDatatype(RDFSDatatype) - Static method in class edu.stanford.smi.protegex.owl.model.impl.XMLSchemaDatatypes
getRDFDatatype() - Method in interface edu.stanford.smi.protegex.owl.model.OWLDataRange
  Gets the RDFSDatatype of the first element in this data range.
getRDFDatatypes() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getRdfDatatypes() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getRDFExternalClassClass() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getRdfExternalClassClass() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getRDFExternalPropertyClass() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getRdfExternalPropertyClass() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getRDFExternalResource(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
  Deprecated.
getRDFExternalResource(String) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Deprecated. use getRDFUntypedResource instead
getRDFExternalResourceClass() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getRdfExternalResourceClass() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getRDFExternalResourceClass() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Deprecated. use getRDFUntypedResourcesClass
getRDFFirstProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getRdfFirstProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getRDFFirstProperty() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets the rdf:first property.
getRDFIndividual(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getRDFIndividual(String) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
getRDFIndividuals() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getRDFIndividuals(boolean) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getRDFIndividuals() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets those Instances in the ontology that are instances of an RDFSNamedClass.
getRDFIndividuals(boolean) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets those Instances in the ontology that are instances of an RDFSNamedClass.
getRDFListClass() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getRdfListClass() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getRDFListClass() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets the rdf:List class.
getRDFListCls() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getRDFNil() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getRdfNil() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getRDFNil() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets the placeholder for empty rdf:Lists.
getRDFObjectProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getRdfObjectProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getRDFPredicateProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getRdfPredicateProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getRDFProperties() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getRDFProperties() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
getRDFProperties() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFIndividual
getRDFProperties() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
getRDFProperties(RDFResource) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
getRDFProperties() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets a collection of all RDFProperties (or subclasses thereof).
getRDFProperties() - Method in interface edu.stanford.smi.protegex.owl.model.RDFResource
  Gets all RDFProperties that have at least one value at this.
getRDFProperty() - Method in class edu.stanford.smi.protegex.owl.javacode.RDFPropertyAtClassCode
getRDFProperty() - Method in class edu.stanford.smi.protegex.owl.javacode.RDFPropertyCode
getRDFProperty(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getRDFProperty(String) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  A convenience method to access a slot as RDFProperty.
getRDFProperty(OWLModel, int) - Static method in class edu.stanford.smi.protegex.owl.model.XSPNames
getRDFProperty(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getRDFProperty() - Method in class edu.stanford.smi.protegex.owl.ui.clsproperties.PropertyTreeNode
getRDFProperty(int) - Method in class edu.stanford.smi.protegex.owl.ui.clsproperties.RDFPropertiesTableModel
getRDFProperty() - Method in class edu.stanford.smi.protegex.owl.ui.widget.AbstractPropertyWidget
getRDFProperty() - Method in interface edu.stanford.smi.protegex.owl.ui.widget.PropertyWidget
getRDFPropertyClass() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getRdfPropertyClass() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getRDFPropertyClass() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets the rdf:Property metaclass.
getRDFPropertyFromName(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.model.classparser.ParserUtils
getRDFPropertyFromName(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getRDFResource(Resource) - Method in class edu.stanford.smi.protegex.owl.jena.JenaOWLModel
getRDFResource(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getRDFResource(String) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets an RDFResource by its name.
getRDFResource(int) - Method in class edu.stanford.smi.protegex.owl.swrl.ui.table.SWRLTableModel
getRDFResource(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getRDFResource(OWLModel, URI) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getRDFResource(int) - Method in class edu.stanford.smi.protegex.owl.ui.classform.component.property.PropertyFormTableModel
getRDFResource(int) - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.DisjointClassesTableModel
getRDFResource(int) - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTableModel
getRDFResource(int) - Method in class edu.stanford.smi.protegex.owl.ui.owltable.AbstractOWLTableModel
getRDFResource(int) - Method in interface edu.stanford.smi.protegex.owl.ui.owltable.SymbolTableModel
getRDFResourceAs(String, Class) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getRDFResourceAs(String, Class) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Combines the calls `getRDFResource(name).as(javaInterface)`.
getRDFResourceByBrowserText(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getRDFResourceByBrowserText(String) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets the first resource that has a given browser text.
getRDFResourceByNameOrBrowserText(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getRDFResourceByNameOrBrowserText(String) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets the first instance that has a given name or browser text.
getRDFResourceCount() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getRDFResourceCount() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets the number of all RDFResources in this model.
getRDFResourceFromName(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.model.classparser.ParserUtils
getRDFResourceFromName(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getRDFResourceFromRDFSLabel(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.model.classparser.ParserUtils
getRDFResourceFromRDFSLabel(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getRDFResources() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getRDFResources(KnowledgeBase, Collection<? extends Frame>) - Static method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getRDFResources() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets a list of all RDFResources in this model.
getRDFResources() - Method in class edu.stanford.smi.protegex.owl.ui.classform.component.property.PropertyFormTableModel
getRDFResourcesWithPropertyValue(RDFProperty, Object) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getRDFResourcesWithPropertyValue(RDFProperty, Object) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets all RDFResources that have a given value for a given property.
getRDFRestProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getRdfRestProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getRDFRestProperty() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets the rdf:rest property, which is used to describe the rest of an rdf:List.
getRDFSClass(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getRDFSClass() - Method in class edu.stanford.smi.protegex.owl.ui.explorer.ExplorerTreeNode
getRDFSClassCount() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getRDFSClassCount() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets the number of rdfs:Classes (or owl:Classes) in this model, including anonymous classes and system classes.
getRDFSClasses() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getRDFSClasses() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets all rdfs:Classes (or owl:Classes) in this model, including anonymous classes and system classes.
getRDFSClassFromName(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.model.classparser.ParserUtils
getRDFSClassFromName(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getRDFSClassMetaClassCls() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getRDFSCommentProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getRdfsCommentProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getRDFSCommentProperty() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
getRDFSContainerClass() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getRdfsContainerClass() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getRDFSDatatype(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getRDFSDatatype(OWLModel, URI) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getRDFSDatatypeByName(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getRDFSDatatypeByName(String) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets an XML Schema Datatype using the prefix notation (e.g.
getRDFSDatatypeByURI(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getRDFSDatatypeByURI(String) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets an XML Schema Datatype by its URI (e.g.
getRDFSDatatypeClass() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getRdfsDatatypeClass() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getRDFSDatatypeFactory() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getRDFSDatatypeFactory() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
getRDFSDatatypeOfValue(Object) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getRDFSDatatypeOfValue(Object) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets the RDFSDatatype of a given primitive value, which can be either a standard value (e.g.
getRDFSDatatypes() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getRDFSDatatypes() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets a Collection of the (named) RDF/XML Schema datatypes.
getRDFSDomainProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getRdfsDomainProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getRDFSDomainProperty() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets the rdfs:domain property.
getRDFSDomainProperty(OWLModel) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getRDFSeqClass() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getRdfSeqClass() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getRDFSIsDefinedByProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getRdfsIsDefinedByProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getRDFSIsDefinedByProperty() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
getRDFSLabelLanguages(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getRDFSLabelLanguages(OWLModel, URI) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getRDFSLabelProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getRdfsLabelProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getRDFSLabelProperty() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
getRDFSLabels(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getRDFSLabels(OWLModel, String, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getRDFSLabels(OWLModel, URI, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getRDFSLiteral(OWLModel) - Method in class edu.stanford.smi.protegex.owl.ui.widget.HTMLEditorPanel
getRDFSLiteralClass() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
  Deprecated. This is based on a wrong premise - there is no such class. Using this method can cause problems.
getRdfsLiteralClass() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
  Deprecated. This is based on a wrong premise. This is not a class. Using this can cause serious problems.
getRDFSlotCls(int) - Method in class edu.stanford.smi.protegex.owl.ui.matrix.property.PropertyMatrixTableModel
getRDFSMemberProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getRdfsMemberProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getRDFSNamedClass(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getRDFSNamedClass(String) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
getRDFSNamedClass(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getRDFSNamedClass(OWLModel, URI) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getRDFSNamedClassClass() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getRdfsNamedClassClass() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getRDFSNamedClassClass() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets the rdfs:Class metaclass
getRDFSRangeProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getRdfsRangeProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getRDFSRangeProperty() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets the rdfs:range property.
getRDFSRangeProperty(OWLModel) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getRDFSSeeAlsoProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getRdfsSeeAlsoProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getRDFSSubClassOfProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getRdfsSubClassOfProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getRDFSSubClassOfProperty() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
getRDFSSubClassOfProperty(OWLModel) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getRDFSSubPropertyOf() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getRdfsSubPropertyOf() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getRDFSSubPropertyOfProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getRDFSSubPropertyOfProperty() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets the property rdfs:subPropertyOf
getRDFSSubPropertyOfProperty(OWLModel) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getRDFStatementClass() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getRdfStatementClass() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getRDFSubjectProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getRdfSubjectProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getRDFType() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
getRDFType() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFIndividual
getRDFType() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
getRDFType(RDFResource) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
getRDFType() - Method in interface edu.stanford.smi.protegex.owl.model.RDFResource
  Gets the first asserted rdf:type of this resource.
getRDFTypeProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getRdfTypeProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getRDFTypeProperty() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets the rdf:type property.
getRDFTypes() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
getRDFTypes() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFIndividual
getRDFTypes() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
getRDFTypes(RDFResource) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
getRDFTypes() - Method in interface edu.stanford.smi.protegex.owl.model.RDFResource
  Gets the asserted rdf:types of this resource.
getRDFUntypedResource(String, boolean) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getRDFUntypedResource(String, boolean) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets an RDFUntypedResource for a given string.
getRDFUntypedResourcesClass() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getRDFUntypedResourcesClass() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets the internal type of all untyped resources.
getRDFValueProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getRdfValueProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getRDFXMLLiteralType() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getRDFXMLLiteralType() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets the resource representing the datatype rdf:XMLLiteral.
getReachableSimpleInstances() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeInstance
  Deprecated. not needed
getReachableSimpleInstances(Collection) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not needed
getReadOnlyAnnotationPropertyIcon(ImageIcon) - Static method in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
getReadOnlyClsIcon(String) - Static method in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
getReadOnlyClsIcon(ImageIcon) - Static method in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
getReadOnlyIcon(ImageIcon, String) - Static method in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
getReadOnlyIndividualIcon(ImageIcon) - Static method in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
getReadOnlyPropertyIcon(ImageIcon) - Static method in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
getReadOnlySlotName() - Static method in class edu.stanford.smi.protegex.owl.model.ProtegeNames
getReasoner(OWLModel) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.ReasonerManager
  Deprecated.
getReasoner(OWLModel, boolean) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.ReasonerManager
  Deprecated. Use `createProtegeReasoner(owlModel, DefaultProtegeOWLReasoner.class)`
getReasonerIcon() - Method in class edu.stanford.smi.protegex.owl.swrl.P3SWRLTabPluginRegistrationRecord
getReasonerIcon() - Static method in class edu.stanford.smi.protegex.owl.swrl.ui.icons.DroolsIcons
getReasonerIcon() - Static method in class edu.stanford.smi.protegex.owl.swrl.ui.icons.JessIcons
getReasonerInspectorIcon() - Static method in class edu.stanford.smi.protegex.owl.inference.ui.icons.InferenceIcons
getReasonerInspectorTreeIcon() - Static method in class edu.stanford.smi.protegex.owl.inference.ui.icons.InferenceIcons
getReasonerJavaClass(String) - Static method in class edu.stanford.smi.protegex.owl.inference.protegeowl.ReasonerPluginManager
getReasonerKnowledgeBaseURI() - Method in class edu.stanford.smi.protegex.owl.inference.dig.DefaultProtegeDIGReasoner
getReasonerKnowledgeBaseURI() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.DefaultProtegeOWLReasoner
getReasonerKnowledgeBaseURI() - Method in interface edu.stanford.smi.protegex.owl.inference.protegeowl.ProtegeOWLReasoner
  Deprecated. The external DIG Reasoner that provides the reasoning services assigns each knowledgebase that it knows about a URI in order to identify the knowledgebase.
getReasonerName() - Static method in class edu.stanford.smi.protegex.owl.inference.dig.DefaultProtegeDIGReasoner
getReasonerName() - Method in class edu.stanford.smi.protegex.owl.inference.dig.reasoner.DefaultReasonerIdentity
getReasonerName(Class<? extends ProtegeReasoner>) - Static method in class edu.stanford.smi.protegex.owl.inference.protegeowl.ReasonerPluginManager
getReasonerName(OWLModel) - Method in class edu.stanford.smi.protegex.owl.inference.ui.ReasonerActionRunner
getReasonerOntModel(String) - Method in class edu.stanford.smi.protegex.owl.database.OWLDatabaseModel
getReasonerOntModel(String) - Method in class edu.stanford.smi.protegex.owl.jena.JenaOWLModel
getReasonerOntModel(String) - Method in interface edu.stanford.smi.protegex.owl.jena.OntModelProvider
  Gets an OntModel that is connected to a (DIG) reasoner.
getReasonerPluginInstance(OWLModel, Class<? extends ProtegeReasoner>) - Static method in class edu.stanford.smi.protegex.owl.inference.protegeowl.ReasonerPluginManager
getReasonerPluginInstance(Class<? extends ProtegeReasoner>) - Static method in class edu.stanford.smi.protegex.owl.inference.protegeowl.ReasonerPluginManager
getReasonerPluginInstance(String) - Static method in class edu.stanford.smi.protegex.owl.inference.protegeowl.ReasonerPluginManager
getReasonerPluginInstance(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.inference.protegeowl.ReasonerPluginManager
getReasonerTaskListener() - Method in class edu.stanford.smi.protegex.owl.inference.reasoner.AbstractProtegeReasoner
getReasonerTaskListener() - Method in interface edu.stanford.smi.protegex.owl.inference.reasoner.ProtegeReasoner
getReasonerURL() - Method in class edu.stanford.smi.protegex.owl.inference.dig.reasoner.DefaultDIGReasoner
  Gets the URL of the reasoner.
getReasonerURL() - Method in interface edu.stanford.smi.protegex.owl.inference.dig.reasoner.DIGReasoner
  Gets the URL of the reasoner.
getReasonerURL() - Method in class edu.stanford.smi.protegex.owl.inference.util.ReasonerPreferences
  Gets the URL for the external DIG Reasoner.
getRecentInstance() - Static method in exception edu.stanford.smi.protegex.owl.model.classparser.OWLClassParseException
  Gets the most recently created exception of this type.
getRedoIcon() - Static method in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
getReferencedImps(RDFResource) - Method in class edu.stanford.smi.protegex.owl.swrl.model.SWRLFactory
getReferencedInstances(Set<RDFResource>) - Method in class edu.stanford.smi.protegex.owl.swrl.model.impl.AbstractSWRLIndividual
getReferencedInstances(Set<RDFResource>) - Method in class edu.stanford.smi.protegex.owl.swrl.model.impl.AbstractSWRLIndividualsAtom
getReferencedInstances(Set<RDFResource>) - Method in class edu.stanford.smi.protegex.owl.swrl.model.impl.DefaultSWRLAtomList
getReferencedInstances(Set<RDFResource>) - Method in class edu.stanford.smi.protegex.owl.swrl.model.impl.DefaultSWRLBuiltin
getReferencedInstances(Set<RDFResource>) - Method in class edu.stanford.smi.protegex.owl.swrl.model.impl.DefaultSWRLBuiltinAtom
getReferencedInstances(Set<RDFResource>) - Method in class edu.stanford.smi.protegex.owl.swrl.model.impl.DefaultSWRLClassAtom
getReferencedInstances(Set<RDFResource>) - Method in class edu.stanford.smi.protegex.owl.swrl.model.impl.DefaultSWRLDataRangeAtom
getReferencedInstances(Set<RDFResource>) - Method in class edu.stanford.smi.protegex.owl.swrl.model.impl.DefaultSWRLDatavaluedPropertyAtom
getReferencedInstances() - Method in class edu.stanford.smi.protegex.owl.swrl.model.impl.DefaultSWRLImp
getReferencedInstances(Set<RDFResource>) - Method in class edu.stanford.smi.protegex.owl.swrl.model.impl.DefaultSWRLImp
getReferencedInstances(Set<RDFResource>) - Method in class edu.stanford.smi.protegex.owl.swrl.model.impl.DefaultSWRLIndividualPropertyAtom
getReferencedInstances(Set<RDFResource>) - Method in class edu.stanford.smi.protegex.owl.swrl.model.impl.DefaultSWRLVariable
getReferencedInstances() - Method in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLImp
getReferencedInstances(Set<RDFResource>) - Method in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLIndividual
  Collects all instances (SWRLInstances, classes, etc) that are somehow involved in the subexpression below this.
getReferences() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeInstance
getReferences(int) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeInstance
getReferences(Object, int) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
getReferences(Object) - Method in class edu.stanford.smi.protegex.owl.model.triplestore.impl.TripleStoreImpl
getReferringAnonymousClasses() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
getReferringAnonymousClasses() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLAllDifferent
getReferringAnonymousClasses() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFIndividual
getReferringAnonymousClasses() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
getReferringAnonymousClasses() - Method in interface edu.stanford.smi.protegex.owl.model.RDFResource
  Gets a Collection of all OWLAnonymousClasses that have a reference to this.
getReferringAnonymousClses(RDFResource) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
getReferringLogicalClasses(RDFList, Set) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
getRegisteredPlugins() - Static method in class edu.stanford.smi.protegex.owl.swrl.P3SWRLTabPluginManager
getRelatedIndividuals(OWLIndividual, OWLObjectProperty) - Method in class edu.stanford.smi.protegex.owl.inference.reasoner.AbstractProtegeReasoner
getRelatedIndividuals(OWLIndividual, OWLObjectProperty) - Method in interface edu.stanford.smi.protegex.owl.inference.reasoner.ProtegeReasoner
  Get the individuals that are related to the `subject` individual through the object property `objectProperty`.
getRelatedValues(OWLIndividual, OWLDatatypeProperty) - Method in class edu.stanford.smi.protegex.owl.inference.reasoner.AbstractProtegeReasoner
getRelatedValues(OWLIndividual, OWLDatatypeProperty) - Method in interface edu.stanford.smi.protegex.owl.inference.reasoner.ProtegeReasoner
  Get the values that are related to the `subject` individual through the datatype property `datatypeProperty`.
getRelativePath() - Method in class edu.stanford.smi.protegex.owl.ui.repository.wizard.impl.RelativeURLSpecificationWizardPanel
getRelevantProperties() - Method in class edu.stanford.smi.protegex.owl.ui.components.annotations.AnnotationsTableModel
getRelevantProperties() - Method in class edu.stanford.smi.protegex.owl.ui.components.triples.TriplesTableModel
getRemoteResourceRenderer() - Method in class edu.stanford.smi.protegex.owl.ui.cls.OWLSubclassPane
getRemoveIcon() - Static method in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
getRemoveIcon(String) - Static method in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
getRenderer() - Method in class edu.stanford.smi.protegex.owl.ui.resourceselection.ResourceSelectionAction
getRepositories() - Method in class edu.stanford.smi.protegex.owl.database.creator.OwlDatabaseCreator
getRepositories() - Method in class edu.stanford.smi.protegex.owl.database.creator.OwlDatabaseFromFileCreator
getRepositories() - Method in class edu.stanford.smi.protegex.owl.jena.creator.OwlProjectFromReaderCreator
getRepositories() - Method in class edu.stanford.smi.protegex.owl.jena.creator.OwlProjectFromStreamCreator
getRepositories() - Method in class edu.stanford.smi.protegex.owl.jena.creator.OwlProjectFromUriCreator
getRepositories() - Static method in class edu.stanford.smi.protegex.owl.jena.JenaKnowledgeBaseFactory
getRepositories() - Method in class edu.stanford.smi.protegex.owl.model.factory.AbstractOwlProjectCreator
getRepositories() - Method in class edu.stanford.smi.protegex.owl.ui.repository.AbstractRepositoriesPanel
getRepositories() - Method in class edu.stanford.smi.protegex.owl.ui.repository.GlobalRepositoriesPanel
getRepositories() - Method in class edu.stanford.smi.protegex.owl.ui.repository.ProjectRepositoriesPanel
getRepositoriesTitle() - Method in class edu.stanford.smi.protegex.owl.ui.repository.AbstractRepositoriesPanel
getRepositoriesTitle() - Method in class edu.stanford.smi.protegex.owl.ui.repository.GlobalRepositoriesPanel
getRepositoriesTitle() - Method in class edu.stanford.smi.protegex.owl.ui.repository.ProjectRepositoriesPanel
getRepository(URI) - Method in class edu.stanford.smi.protegex.owl.repository.RepositoryManager
getRepository(URI, boolean) - Method in class edu.stanford.smi.protegex.owl.repository.RepositoryManager
getRepository() - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.imports.wizard.AbstractImportEntry
getRepository() - Method in interface edu.stanford.smi.protegex.owl.ui.metadatatab.imports.wizard.ImportEntry
getRepository() - Method in class edu.stanford.smi.protegex.owl.ui.repository.wizard.PluginPanelHolder
getRepository() - Method in class edu.stanford.smi.protegex.owl.ui.repository.wizard.RepositoryWizard
getRepositoryDescription() - Method in class edu.stanford.smi.protegex.owl.repository.impl.DatabaseRepository
getRepositoryDescription() - Method in class edu.stanford.smi.protegex.owl.repository.impl.DublinCoreDLVersionRedirectRepository
getRepositoryDescription() - Method in class edu.stanford.smi.protegex.owl.repository.impl.ForcedURLRetrievalRepository
getRepositoryDescription() - Method in class edu.stanford.smi.protegex.owl.repository.impl.FTPRepository
getRepositoryDescription() - Method in class edu.stanford.smi.protegex.owl.repository.impl.HTTPRepository
getRepositoryDescription() - Method in class edu.stanford.smi.protegex.owl.repository.impl.LocalFileRepository
getRepositoryDescription() - Method in class edu.stanford.smi.protegex.owl.repository.impl.LocalFolderRepository
getRepositoryDescription() - Method in class edu.stanford.smi.protegex.owl.repository.impl.ProtegeOWLPluginFolderRepository
getRepositoryDescription() - Method in class edu.stanford.smi.protegex.owl.repository.impl.RelativeFileRepository
getRepositoryDescription() - Method in class edu.stanford.smi.protegex.owl.repository.impl.RelativeFolderRepository
getRepositoryDescription() - Method in interface edu.stanford.smi.protegex.owl.repository.Repository
  Gets a description of the type of the repository.
getRepositoryDescriptor() - Method in class edu.stanford.smi.protegex.owl.repository.impl.AbstractLocalRepository
getRepositoryDescriptor() - Method in class edu.stanford.smi.protegex.owl.repository.impl.DatabaseRepository
getRepositoryDescriptor() - Method in class edu.stanford.smi.protegex.owl.repository.impl.DublinCoreDLVersionRedirectRepository
getRepositoryDescriptor() - Method in class edu.stanford.smi.protegex.owl.repository.impl.ForcedURLRetrievalRepository
getRepositoryDescriptor() - Method in class edu.stanford.smi.protegex.owl.repository.impl.FTPRepository
getRepositoryDescriptor() - Method in class edu.stanford.smi.protegex.owl.repository.impl.HTTPRepository
getRepositoryDescriptor() - Method in class edu.stanford.smi.protegex.owl.repository.impl.LocalFolderRepository
getRepositoryDescriptor() - Method in class edu.stanford.smi.protegex.owl.repository.impl.RelativeFileRepository
getRepositoryDescriptor() - Method in class edu.stanford.smi.protegex.owl.repository.impl.RelativeFolderRepository
getRepositoryDescriptor() - Method in interface edu.stanford.smi.protegex.owl.repository.Repository
  Gets the descriptor for this repository.
getRepositoryFileFromRelativePath(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.repository.util.RepositoryUtil
getRepositoryManager() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getRepositoryManager() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
getRepositoryManager() - Method in class edu.stanford.smi.protegex.owl.ui.repository.AbstractRepositoriesPanel
getRepositoryToAdd() - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.imports.wizard.FileImportEntry
getRepositoryToAdd() - Method in interface edu.stanford.smi.protegex.owl.ui.metadatatab.imports.wizard.ImportEntry
getRepositoryToAdd() - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.imports.wizard.RepositoryImportEntry
getRepositoryToAdd() - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.imports.wizard.URLImportEntry
getRepositoryWizard() - Method in class edu.stanford.smi.protegex.owl.ui.repository.wizard.AbstractRepositoryWizardPage
getRequiresReloadUI() - Method in class edu.stanford.smi.protegex.owl.ui.menu.preferences.DatatypeSettingsPanel
getRequiresReloadUI() - Method in class edu.stanford.smi.protegex.owl.ui.menu.preferences.PreferencesPanel
getRequiresReloadUI() - Method in class edu.stanford.smi.protegex.owl.ui.menu.preferences.RenderingPanel
getRequiresReloadUI() - Method in class edu.stanford.smi.protegex.owl.ui.menu.preferences.UISettingsPanel
getRequiresReloadUI() - Method in class edu.stanford.smi.protegex.owl.ui.menu.preferences.VisibilityPanel
getRequiresReloadUI() - Method in class edu.stanford.smi.protegex.owl.ui.profiles.ProfileSelectionPanel
getRequiresReloadUI() - Method in class edu.stanford.smi.protegex.owl.ui.projectview.ConfigureTabsPanel
getResource() - Method in class edu.stanford.smi.protegex.owl.ui.actions.ResourceAction
getResource() - Method in class edu.stanford.smi.protegex.owl.ui.components.singleresource.SingleResourceComponent
getResource(int) - Method in class edu.stanford.smi.protegex.owl.ui.navigation.NavigationHistoryManager
getResource() - Method in class edu.stanford.smi.protegex.owl.ui.resourcedisplay.ResourceDisplay
getResource() - Method in interface edu.stanford.smi.protegex.owl.ui.resourcedisplay.ResourcePanel
getResourceAction(Class) - Static method in class edu.stanford.smi.protegex.owl.ui.actions.ResourceActionManager
getResourceActionClasses() - Static method in class edu.stanford.smi.protegex.owl.ui.actions.ResourceActionManager
getResourceAt(int) - Method in class edu.stanford.smi.protegex.owl.ui.components.multiresource.MultiResourceListModel
getResourceAttributeName(RDFResource, XMLWriter) - Static method in class edu.stanford.smi.protegex.owl.writer.rdfxml.util.Util
  Gets the value for a resource attribute value such as rdf:about or rdf:resource.
getResourceDisplay() - Method in class edu.stanford.smi.protegex.owl.ui.cls.OWLClassesTab
  Deprecated.
getResourceListener() - Method in class edu.stanford.smi.protegex.owl.inference.reasoner.AbstractProtegeReasoner
getResourceName(AResource) - Static method in class edu.stanford.smi.protegex.owl.jena.parser.ParserUtil
getResourceNameForURI(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getResourceNameForURI(String) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets the name of a Frame by converting a URI.
getResourceNameMatches(String, int) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getResourceNameMatches(String, int) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets all RDFResources that have a matching name (possibly using wildcards).
getResourcePanel() - Method in class edu.stanford.smi.protegex.owl.ui.cls.OWLClassesTab
getResourcePanelFactory() - Static method in class edu.stanford.smi.protegex.owl.ui.ProtegeUI
getResources() - Method in class edu.stanford.smi.protegex.owl.writer.rdfxml.rdfwriter.OWLModelContentWriter
getResourcesWithPrefix(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getResourcesWithPrefix(String) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets all resource in this that have a given prefix.
getResourceURI() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFExternalResource
getResourceURI() - Method in interface edu.stanford.smi.protegex.owl.model.RDFExternalResource
  Gets the URI string of the resource being represented by this.
getRest() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFList
getRest() - Method in interface edu.stanford.smi.protegex.owl.model.RDFList
getRest(RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.components.rdflist.RDFListComponent
getRestProperty() - Method in class edu.stanford.smi.protegex.owl.ui.components.rdflist.RDFListComponent
getRestrictedClass() - Method in class edu.stanford.smi.protegex.owl.ui.clsproperties.PropertyTreeNode
getRestriction(int) - Method in class edu.stanford.smi.protegex.owl.ui.classform.component.property.PropertyFormTableModel
getRestriction() - Method in class edu.stanford.smi.protegex.owl.ui.clsproperties.OldRestrictionTreeNode
getRestrictionCount() - Method in class edu.stanford.smi.protegex.owl.model.util.ModelMetrics
getRestrictionMetaCls() - Method in class edu.stanford.smi.protegex.owl.ui.clsproperties.NewRestrictionTreeNode
getRestrictionMetaCls() - Method in class edu.stanford.smi.protegex.owl.ui.clsproperties.OldRestrictionTreeNode
getRestrictionMetaCls() - Method in class edu.stanford.smi.protegex.owl.ui.clsproperties.RestrictionTreeNode
getRestrictionPredicatesNames() - Static method in class edu.stanford.smi.protegex.owl.jena.parser.OWLFramesMapping
getRestrictions() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLNamedClass
getRestrictions(boolean) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLNamedClass
getRestrictions(RDFProperty, boolean) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLNamedClass
getRestrictions() - Method in interface edu.stanford.smi.protegex.owl.model.OWLNamedClass
  Same as `getRestrictions(false)`.
getRestrictions(boolean) - Method in interface edu.stanford.smi.protegex.owl.model.OWLNamedClass
  Gets all Restrictions that are defined on this class or (optionally) its superclasses.
getRestrictions(RDFProperty, boolean) - Method in interface edu.stanford.smi.protegex.owl.model.OWLNamedClass
  Gets all restrictions that are defined on a given property.
getRestrictionTreeNode(int) - Method in class edu.stanford.smi.protegex.owl.ui.clsproperties.PropertyTreeNode
getRestrictionTreeNode(OWLRestriction) - Method in class edu.stanford.smi.protegex.owl.ui.clsproperties.PropertyTreeNode
getRestrictionTreeNode(String) - Method in class edu.stanford.smi.protegex.owl.ui.clsproperties.PropertyTreeNode
getResult() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.AbstractSingleConceptWithConceptCollectionResultTask
getResult() - Method in interface edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.BooleanResultReasonerTask
getResult() - Method in interface edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.CollectionResultReasonerTask
getResult() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.GetConceptIntersectionSuperclassesTask
getResult() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.GetConceptSatisfiableTask
getResult() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.GetIndividualInferredTypesTask
getResult() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.GetIndividualsBelongingToConceptTask
getResult() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.GetSubsumptionRelationshipTask
getResult() - Method in interface edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.IntegerResultReasonerTask
getResult() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.IsConceptIntersectionSatisfiableTask
getResult() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.IsDisjointToTask
getResult() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.IsSubsumedByTask
getResult() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.AbstractSingleConceptWithConceptCollectionResultTask
getResult() - Method in interface edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.BooleanResultReasonerTask
getResult() - Method in interface edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.CollectionResultReasonerTask
getResult() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.GetConceptSatisfiableTask
getResult() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.GetIndividualInferredTypesTask
getResult() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.GetIndividualsBelongingToConceptTask
getResult() - Method in interface edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.IntegerResultReasonerTask
getResult() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.IsConceptIntersectionSatisfiableTask
getResult() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.IsDisjointToTask
getResult() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.IsSubsumedByTask
getResult() - Method in class edu.stanford.smi.protegex.owl.ui.search.SearchNamedClassPanel
getResultAsImp() - Method in class edu.stanford.smi.protegex.owl.swrl.ui.code.SWRLTextAreaPanel
getResultAsString() - Method in class edu.stanford.smi.protegex.owl.swrl.ui.code.SWRLTextAreaPanel
getResultCount() - Method in class edu.stanford.smi.protegex.owl.ui.search.finder.BasicFind
getResultCount() - Method in interface edu.stanford.smi.protegex.owl.ui.search.finder.Find
getResultResources() - Method in class edu.stanford.smi.protegex.owl.ui.search.finder.BasicFind
getResultResources() - Method in interface edu.stanford.smi.protegex.owl.ui.search.finder.Find
getResults() - Method in class edu.stanford.smi.protegex.owl.ui.search.finder.BasicFind
getResults() - Method in interface edu.stanford.smi.protegex.owl.ui.search.finder.Find
  This method can be called to get the current results
getResultsPanelByName(String) - Static method in class edu.stanford.smi.protegex.owl.ui.results.ResultsPanelManager
  Deprecated. use the other version please
getResultsPanelByName(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.ui.results.ResultsPanelManager
getRevertProjectIcon() - Static method in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
getRoot() - Method in class edu.stanford.smi.protegex.owl.ui.existential.ExistentialTreeModel
getRootCls() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getRootCls() - Method in class edu.stanford.smi.protegex.owl.ui.owltable.OWLTableTransferHandler
getRootClses() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not needed
getRootClsMetaCls() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not needed
getRootElementName() - Method in class edu.stanford.smi.protegex.owl.repository.util.XMLBaseExtractor
getRootFacetMetaCls() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not needed
getRootFolder() - Method in class edu.stanford.smi.protegex.owl.ui.menu.code.KazukiPanel
getRootMetaCls(Frame) - Static method in class edu.stanford.smi.protegex.owl.ui.cls.ChangeMetaclassAction
getRootOntology() - Method in class edu.stanford.smi.protegex.owl.ui.importstree.ImportsTree
getRoots() - Method in class edu.stanford.smi.protegex.owl.ui.cls.ClassTree
getRootSlotMetaCls() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not needed
getRootSlots() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not needed
getRow(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.ui.clsproperties.RDFPropertiesTableModel
getRow(Object) - Method in class edu.stanford.smi.protegex.owl.ui.components.literaltable.LiteralTableModel
getRowCount() - Method in class edu.stanford.smi.protegex.owl.swrl.ui.table.SWRLTableModel
getRowCount() - Method in class edu.stanford.smi.protegex.owl.ui.classform.component.property.PropertyFormTableModel
getRowCount() - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.DisjointClassesTableModel
getRowCount() - Method in class edu.stanford.smi.protegex.owl.ui.clsproperties.RDFPropertiesTableModel
getRowCount() - Method in class edu.stanford.smi.protegex.owl.ui.components.literaltable.LiteralTableModel
getRowCount() - Method in class edu.stanford.smi.protegex.owl.ui.components.rdflist.RDFListComponent
getRowCount() - Method in class edu.stanford.smi.protegex.owl.ui.components.triples.TriplesTableModel
getRowCount() - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTableModel
getRowCount() - Method in class edu.stanford.smi.protegex.owl.ui.matrix.MatrixTableModel
getRowCount() - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.imports.ImportsTableModel
getRowCount() - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.imports.wizard.AddedPrefixesTableModel
getRowCount() - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.prefixes.PrefixesTableModel
getRowCount() - Method in class edu.stanford.smi.protegex.owl.ui.metrics.lang.DLExpressivityTableModel
getRowCount() - Method in class edu.stanford.smi.protegex.owl.ui.owltable.AbstractOWLTableModel
getRowCount() - Method in class edu.stanford.smi.protegex.owl.ui.properties.domain.OWLDomainTableModel
getRowCount() - Method in class edu.stanford.smi.protegex.owl.ui.search.finder.ResultsViewModelFind
getRowCount() - Method in class edu.stanford.smi.protegex.owl.ui.search.FindUsageTableModel
getRowCount() - Method in class edu.stanford.smi.protegex.owl.ui.subsumption.ChangedClassesTableModel
getRowCount() - Method in class edu.stanford.smi.protegex.owl.ui.testing.OWLTestResultsTableModel
getRowCount() - Method in class edu.stanford.smi.protegex.owl.ui.testing.OWLTestSettingsTableModel
getRowOf(Object) - Method in class edu.stanford.smi.protegex.owl.ui.components.multiresource.MultiResourceListModel
getRowOfPrefix(String) - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.prefixes.PrefixesTableModel
getRuleEngineIcon() - Method in class edu.stanford.smi.protegex.owl.swrl.P3SWRLTabPluginRegistrationRecord
getRuleEngineName() - Method in class edu.stanford.smi.protegex.owl.swrl.P3SWRLTabPluginRegistrationRecord
getRuleGroupNames() - Method in class edu.stanford.smi.protegex.owl.swrl.model.impl.DefaultSWRLImp
getRuleGroupNames() - Method in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLImp
getSafeClses(Collection) - Method in class edu.stanford.smi.protegex.owl.model.framestore.updater.QuantifierRestrictionUpdater
getSameAs() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
getSameAs() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFIndividual
getSameAs() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
getSameAs(Instance) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
getSameAs() - Method in interface edu.stanford.smi.protegex.owl.model.RDFResource
  Gets the values of the owl:sameAs property.
getSameAsIcon() - Static method in class edu.stanford.smi.protegex.owl.swrl.ui.icons.SWRLIcons
getSameIndividualAtomCls() - Method in class edu.stanford.smi.protegex.owl.swrl.SWRLSystemFrames
getSaveInferredIcon() - Static method in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
getSaveProjectIcon() - Static method in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
getSearchProperties() - Method in class edu.stanford.smi.protegex.owl.ui.search.finder.BasicFind
  by default automatically search the name and the current browser slot as well as the search synonym slots (if set) FIXME: TT: This method is wrong.
getSearchSynonymProperties() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getSearchSynonymProperties() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets the slots that are used for matching when the user searches for a frame in the search fields.
getSearchType() - Method in class edu.stanford.smi.protegex.owl.ui.search.finder.BasicFind
getSearchType() - Method in interface edu.stanford.smi.protegex.owl.ui.search.finder.Find
getSeconds() - Method in class edu.stanford.smi.protegex.owl.ui.widget.TimePanel
getSelectable() - Method in class edu.stanford.smi.protegex.owl.ui.dialogs.SelectClassPanel
getSelectableNamedClses(OWLModel) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
getSelectableResources() - Method in class edu.stanford.smi.protegex.owl.ui.classform.component.property.AddIndividualAction
getSelectableResources() - Method in class edu.stanford.smi.protegex.owl.ui.classform.component.property.AddNamedClassAction
getSelectableResources() - Method in class edu.stanford.smi.protegex.owl.ui.classform.form.AddPropertyFormComponentAction
getSelectableResources() - Method in class edu.stanford.smi.protegex.owl.ui.clsproperties.AddPropertyAction
getSelectableResources() - Method in class edu.stanford.smi.protegex.owl.ui.components.AddResourceAction
getSelectableResources() - Method in class edu.stanford.smi.protegex.owl.ui.components.singleresource.SetResourceAction
getSelectableResources() - Method in class edu.stanford.smi.protegex.owl.ui.components.triples.AddResourceAction
getSelectableResources() - Method in class edu.stanford.smi.protegex.owl.ui.components.triples.CreateValueAction
getSelectableResources() - Method in class edu.stanford.smi.protegex.owl.ui.existential.ExistentialAction
getSelectableResources() - Method in class edu.stanford.smi.protegex.owl.ui.properties.domain.AddClassToDomainAction
getSelectableResources() - Method in class edu.stanford.smi.protegex.owl.ui.resourcedisplay.AddPropertyWidgetToFormAction
getSelectableResources() - Method in class edu.stanford.smi.protegex.owl.ui.resourcedisplay.RemovePropertyWidgetFromFormAction
getSelectableResources() - Method in class edu.stanford.smi.protegex.owl.ui.resourceselection.ResourceSelectionAction
getSelectedClass() - Method in class edu.stanford.smi.protegex.owl.ui.cls.AssertedClassesPanel
getSelectedClass() - Method in interface edu.stanford.smi.protegex.owl.ui.cls.Hierarchy
getSelectedClass() - Method in class edu.stanford.smi.protegex.owl.ui.cls.OWLClassesTab
getSelectedClass() - Method in class edu.stanford.smi.protegex.owl.ui.existential.ExistentialTreePanel
getSelectedClass() - Method in class edu.stanford.smi.protegex.owl.ui.explorer.ExplorerTreePanel
getSelectedClass() - Method in class edu.stanford.smi.protegex.owl.ui.subsumption.SubsumptionTreePanel
getSelectedClasses(OntModel, OntClass) - Static method in class edu.stanford.smi.protegex.owl.ui.profiles.ProfilesManager
getSelectedCls() - Method in class edu.stanford.smi.protegex.owl.ui.owltable.OWLTable
getSelectedFiles() - Method in class edu.stanford.smi.protegex.owl.ui.refactoring.RenameAcrossFilesPanel
getSelectedImp() - Method in class edu.stanford.smi.protegex.owl.swrl.ui.table.SWRLTable
getSelectedIndex() - Method in class edu.stanford.smi.protegex.owl.ui.navigation.NavigationHistoryManager
getSelectedInstance() - Method in class edu.stanford.smi.protegex.owl.ui.clsproperties.PropertyRestrictionsTree
getSelectedInstance() - Method in class edu.stanford.smi.protegex.owl.ui.matrix.MatrixTable
getSelectedInstances() - Method in class edu.stanford.smi.protegex.owl.ui.clsproperties.PropertyRestrictionsTree
getSelectedItem() - Method in class edu.stanford.smi.protegex.owl.ui.navigation.NavigationHistoryManager
getSelectedItem() - Method in class edu.stanford.smi.protegex.owl.ui.resourceselection.ResourceFilterListModel
getSelectedNamespace() - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.prefixes.PrefixesPanel
getSelectedNode() - Method in class edu.stanford.smi.protegex.owl.ui.existential.ExistentialTreePanel
getSelectedNode() - Method in class edu.stanford.smi.protegex.owl.ui.explorer.ExplorerTreePanel
getSelectedObjects() - Method in class edu.stanford.smi.protegex.owl.ui.components.multiresource.MultiResourceComponent
getSelectedOWLClass() - Method in class edu.stanford.smi.protegex.owl.ui.existential.ExistentialTreePanel
getSelectedOWLInstance() - Method in class edu.stanford.smi.protegex.owl.ui.owltable.SymbolTable
  Deprecated. renamed to getSelectedResource
getSelectedParentClass() - Method in class edu.stanford.smi.protegex.owl.ui.existential.ExistentialTreePanel
getSelectedParentClass() - Method in class edu.stanford.smi.protegex.owl.ui.explorer.ExplorerTreePanel
getSelectedPlugin() - Method in class edu.stanford.smi.protegex.owl.ui.repository.wizard.RepositoryWizard
getSelectedResource() - Method in class edu.stanford.smi.protegex.owl.ui.owltable.SymbolTable
getSelectedResource() - Method in class edu.stanford.smi.protegex.owl.ui.search.finder.FindResultsListView
getSelectedResource() - Method in class edu.stanford.smi.protegex.owl.ui.search.finder.FindResultsTableView
getSelectedResources() - Method in class edu.stanford.smi.protegex.owl.ui.importstree.ImportsTree
  Gets the currently selected resources.
getSelectedRow() - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsWidget
  Gets the selected row in the asserted conditions widget.
getSelectedRows() - Method in class edu.stanford.smi.protegex.owl.ui.owltable.SymbolTable
  Overloaded to treat a nasty Swing bug (returns sometimes values outside of range etc).
getSelectedRuleName() - Static method in class edu.stanford.smi.protegex.owl.swrl.P3SWRLTabPluginManager
getSelectedTriples() - Method in class edu.stanford.smi.protegex.owl.ui.cls.ClassTree
getSelectedTriples() - Method in class edu.stanford.smi.protegex.owl.ui.components.multiresource.MultiResourceList
getSelectedTriples() - Method in class edu.stanford.smi.protegex.owl.ui.individuals.InstancesList
getSelectedTriples() - Method in class edu.stanford.smi.protegex.owl.ui.owltable.SymbolTable
getSelectedTriples() - Method in interface edu.stanford.smi.protegex.owl.ui.TripleSelectable
  Gets the selected triples in an order that is meaningful to the component.
getSelection() - Method in class edu.stanford.smi.protegex.owl.ui.cls.AssertedClassesPanel
getSelection() - Method in class edu.stanford.smi.protegex.owl.ui.cls.ClassTreeWithBrowserText
getSelection() - Method in class edu.stanford.smi.protegex.owl.ui.clsproperties.PropertyRestrictionsTree
getSelection() - Method in class edu.stanford.smi.protegex.owl.ui.clsproperties.PropertyRestrictionsTreeWidget
getSelection() - Method in class edu.stanford.smi.protegex.owl.ui.components.rdflist.RDFListComponent
getSelection() - Method in class edu.stanford.smi.protegex.owl.ui.dialogs.SelectClassPanel
getSelection() - Method in class edu.stanford.smi.protegex.owl.ui.dialogs.SelectInstanceFromCollectionPanelWithFinder
getSelection() - Method in class edu.stanford.smi.protegex.owl.ui.dialogs.SelectOWLClsesPanel
getSelection() - Method in class edu.stanford.smi.protegex.owl.ui.dialogs.SelectResourcesFromCollectionPanel
getSelection() - Method in class edu.stanford.smi.protegex.owl.ui.dialogs.SelectResourcesPanel
getSelection() - Method in class edu.stanford.smi.protegex.owl.ui.individuals.AssertedInstancesListPanel
getSelection() - Method in class edu.stanford.smi.protegex.owl.ui.navigation.TabNavigationHistorySelectable
getSelection() - Method in class edu.stanford.smi.protegex.owl.ui.properties.domain.OWLDomainTable
getSelection() - Method in class edu.stanford.smi.protegex.owl.ui.properties.OWLInversePropertyWidget
getSelection() - Method in class edu.stanford.smi.protegex.owl.ui.properties.OWLPropertyHierarchiesPanel
getSelection() - Method in class edu.stanford.smi.protegex.owl.ui.resourcedisplay.ResourceDisplay
getSelectionDialogFactory() - Static method in class edu.stanford.smi.protegex.owl.ui.ProtegeUI
getSessionObject(String) - Method in class edu.stanford.smi.protegex.owl.model.project.AbstractOWLProject
getSessionObject(String) - Method in interface edu.stanford.smi.protegex.owl.model.project.OWLProject
  Gets a session object for the associated OWLModel.
getSetMode() - Method in interface edu.stanford.smi.protegex.owl.javacode.JavaCodeGeneratorOptions
getSetMode() - Method in class edu.stanford.smi.protegex.owl.javacode.ProjectBasedJavaCodeGeneratorOptions
getSettingsMap() - Method in class edu.stanford.smi.protegex.owl.model.project.DefaultOWLProject
getSettingsMap(String) - Method in class edu.stanford.smi.protegex.owl.model.project.DefaultSettingsMap
getSettingsMap() - Method in interface edu.stanford.smi.protegex.owl.model.project.OWLProject
  Gets the projects' SettingsMap.
getSettingsMap(String) - Method in interface edu.stanford.smi.protegex.owl.model.project.SettingsMap
  Gets or creates a nested SettingsMap.
getShort() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFSLiteral
getShort() - Method in interface edu.stanford.smi.protegex.owl.model.RDFSLiteral
getShowHiddenResources() - Method in class edu.stanford.smi.protegex.owl.ui.resourceselection.ResourceSelectionAction
getSiblingSlotWidget(Component, Slot) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.OWLUI
getSimpleFrameStore(KnowledgeBase) - Static method in class edu.stanford.smi.protegex.owl.jena.parser.ParserUtil
getSimpleFrameStore(Frame) - Static method in class edu.stanford.smi.protegex.owl.jena.parser.ParserUtil
getSimpleInstanceCount() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not needed
GetSingleIndividualPropertyValuesAction - Class in edu.stanford.smi.protegex.owl.inference.ui.action
GetSingleIndividualPropertyValuesAction() - Constructor for class edu.stanford.smi.protegex.owl.inference.ui.action.GetSingleIndividualPropertyValuesAction
getSingleLineProperties() - Static method in class edu.stanford.smi.protegex.owl.ui.components.annotations.AnnotationsTable
getSize() - Method in class edu.stanford.smi.protegex.owl.ui.components.multiresource.MultiResourceListModel
getSize() - Method in class edu.stanford.smi.protegex.owl.ui.resourceselection.ResourceFilterListModel
getSize() - Method in class edu.stanford.smi.protegex.owl.ui.search.finder.ResultsViewModelFind
getSlot(String) - Method in class edu.stanford.smi.protegex.owl.jena.parser.AbstractStatefulTripleProcessor
getSlot(Frame) - Method in class edu.stanford.smi.protegex.owl.jena.parser.AbstractStatefulTripleProcessor
getSlot(String) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
getSlot() - Method in class edu.stanford.smi.protegex.owl.ui.properties.domain.OWLDomainTableModel
getSlot() - Method in class edu.stanford.smi.protegex.owl.ui.widget.AbstractPropertyWidget
  Deprecated.
getSlot() - Method in interface edu.stanford.smi.protegex.owl.ui.widget.PropertyWidget
  Deprecated.
getSlotConstraintsSlot() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getSlotCount() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not needed
getSlots() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
getSlotSymbols() - Static method in class edu.stanford.smi.protegex.owl.model.impl.XMLSchemaDatatypes
getSlotValueLastModificationTimestamp(Frame, Slot, boolean) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not needed
getSlotValueLastModifier(Frame, Slot, boolean) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not needed
getSlotValues(Instance, Slot) - Method in class edu.stanford.smi.protegex.owl.model.triplestore.impl.TripleStoreImpl
getSlotValues(Instance, Slot) - Method in class edu.stanford.smi.protegex.owl.model.triplestore.impl.TripleStoreModelImpl
getSlotValues(Instance, Slot) - Method in interface edu.stanford.smi.protegex.owl.model.triplestore.TripleStoreModel
  Similar to getPropertyValues but for native Protege slots and instances.
getSlotValues(Instance, Slot) - Method in class edu.stanford.smi.protegex.owl.server.triplestore.ClientTripleStoreModel
getSoleAllowedCls() - Method in class edu.stanford.smi.protegex.owl.ui.individuals.AssertedInstancesListPanel
getSomeKeyword() - Static method in class edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParserUtil
getSomeValuesFrom(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLNamedClass
getSomeValuesFrom() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLSomeValuesFrom
getSomeValuesFrom(RDFProperty) - Method in interface edu.stanford.smi.protegex.owl.model.OWLNamedClass
  Gets the filler of any defined someValuesFrom restriction for a given property.
getSomeValuesFrom() - Method in interface edu.stanford.smi.protegex.owl.model.OWLSomeValuesFrom
  Gets the owl:someValuesFrom filler.
getSomeValuesFromCount() - Method in class edu.stanford.smi.protegex.owl.model.util.ModelMetrics
getSortClassTreeAfterLoadOption() - Static method in class edu.stanford.smi.protegex.owl.ui.widget.OWLUI
getSortClassTreeOption() - Static method in class edu.stanford.smi.protegex.owl.ui.widget.OWLUI
getSortComparator() - Method in class edu.stanford.smi.protegex.owl.ui.matrix.AnnotationPropertyMatrixColumn
getSortComparator() - Method in class edu.stanford.smi.protegex.owl.ui.matrix.NameMatrixColumn
getSortComparator() - Method in class edu.stanford.smi.protegex.owl.ui.matrix.PrefixMatrixColumn
getSortComparator() - Method in class edu.stanford.smi.protegex.owl.ui.matrix.property.PropertyDomainMatrixColumn
getSortComparator() - Method in class edu.stanford.smi.protegex.owl.ui.matrix.property.PropertyRangeMatrixColumn
getSortComparator() - Method in interface edu.stanford.smi.protegex.owl.ui.matrix.SortableMatrixColumn
getSortPropertiesTreeOption() - Static method in class edu.stanford.smi.protegex.owl.ui.widget.OWLUI
getSource() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.ReasonerTaskEvent
getSourceActions(JComponent) - Method in class edu.stanford.smi.protegex.owl.ui.owltable.OWLTableTransferHandler
getSPARQLAsserts(RDFResource, String) - Static method in class edu.stanford.smi.protegex.owl.testing.constraints.FindSPARQLAssertsTest
getSplitPane(OWLModel) - Static method in class edu.stanford.smi.protegex.owl.ui.results.ResultsPanelManager
getSQWRLBuiltInNames() - Static method in class edu.stanford.smi.protegex.owl.swrl.model.SQWRLNames
getStart() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFList
getStart() - Method in interface edu.stanford.smi.protegex.owl.model.RDFList
  Gets the start of the RDFList chain containing this.
getStatus() - Static method in class edu.stanford.smi.protegex.owl.resource.OWLText
getString() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFSLiteral
getString(String, String) - Method in class edu.stanford.smi.protegex.owl.model.project.AbstractSettingsMap
getString(String) - Method in class edu.stanford.smi.protegex.owl.model.project.DefaultSettingsMap
getString(String) - Method in interface edu.stanford.smi.protegex.owl.model.project.SettingsMap
getString(String, String) - Method in interface edu.stanford.smi.protegex.owl.model.project.SettingsMap
getString() - Method in interface edu.stanford.smi.protegex.owl.model.RDFSLiteral
getSubclassCount() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
getSubclassCount() - Method in interface edu.stanford.smi.protegex.owl.model.RDFSClass
  Gets the number of (direct) subclasses of this.
getSubclasses(OWLClass, ReasonerTaskListener) - Method in class edu.stanford.smi.protegex.owl.inference.dig.DefaultProtegeDIGReasoner
getSubclasses(OWLClass) - Method in class edu.stanford.smi.protegex.owl.inference.dig.DefaultProtegeDIGReasoner
getSubclasses(OWLClass, ReasonerTaskListener) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.DefaultProtegeOWLReasoner
getSubclasses(OWLClass, ReasonerTaskListener) - Method in interface edu.stanford.smi.protegex.owl.inference.protegeowl.ProtegeOWLReasoner
  Deprecated. Gets the (direct) inferred subclasses of the specified class.
getSubclasses(OWLClass) - Method in class edu.stanford.smi.protegex.owl.inference.reasoner.AbstractProtegeReasoner
getSubclasses(OWLClass) - Method in interface edu.stanford.smi.protegex.owl.inference.reasoner.ProtegeReasoner
  Gets the (direct) inferred subclasses of the specified class.
getSubclasses(boolean) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
getSubclasses() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeCls
  Deprecated.
getSubclasses(Cls) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
getSubclasses(boolean) - Method in interface edu.stanford.smi.protegex.owl.model.RDFSClass
  Gets the subclasses of this, including the subclasses of the subclasses etc.
getSubclasses(OntModel, OntClass) - Static method in class edu.stanford.smi.protegex.owl.ui.profiles.ProfilesManager
getSubclassesDisjoint() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLNamedClass
getSubclassesDisjoint() - Method in interface edu.stanford.smi.protegex.owl.model.OWLNamedClass
  Checks whether all subclasses of this are declared to be disjoint.
getSubclassesDisjointSlotName() - Static method in class edu.stanford.smi.protegex.owl.model.ProtegeNames
getSubClassesOf(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getSubClassesOf(OWLModel, URI) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getSubClassesOf(OWLNamedClass) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
GetSubConceptsTask - Class in edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Aug 17, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
GetSubConceptsTask(OWLClass, ProtegeOWLReasoner) - Constructor for class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.GetSubConceptsTask
GetSubConceptsTask - Class in edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Aug 17, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
GetSubConceptsTask(OWLClass, ProtegeReasoner) - Constructor for class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.GetSubConceptsTask
getSubject() - Method in class edu.stanford.smi.protegex.owl.model.triplestore.impl.DefaultTriple
getSubject() - Method in class edu.stanford.smi.protegex.owl.model.triplestore.impl.DefaultTuple
getSubject() - Method in interface edu.stanford.smi.protegex.owl.model.triplestore.Tuple
getSubject() - Method in class edu.stanford.smi.protegex.owl.swrl.ui.table.SWRLTableModel
getSubject() - Method in class edu.stanford.smi.protegex.owl.ui.classform.component.property.PropertyFormTableModel
getSubject() - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.DisjointClassesTableModel
getSubject() - Method in class edu.stanford.smi.protegex.owl.ui.components.AbstractPropertyValuesComponent
getSubject() - Method in class edu.stanford.smi.protegex.owl.ui.components.literaltable.LiteralTableModel
getSubject() - Method in class edu.stanford.smi.protegex.owl.ui.components.multiresource.MultiResourceListModel
getSubject() - Method in interface edu.stanford.smi.protegex.owl.ui.components.PropertyValuesComponent
getSubject() - Method in class edu.stanford.smi.protegex.owl.ui.components.triples.TriplesTableModel
getSubject() - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTableModel
getSubject() - Method in class edu.stanford.smi.protegex.owl.ui.owltable.AbstractOWLTableModel
getSubject() - Method in interface edu.stanford.smi.protegex.owl.ui.owltable.SymbolTableModel
getSubjectType() - Method in class edu.stanford.smi.protegex.owl.ui.components.AbstractPropertyValuesComponent
  Gets the first rdf:type of the current subject.
getSubLanguage(OntModel) - Static method in class edu.stanford.smi.protegex.owl.ui.menu.ValidatorAction
getSubProperties(OWLProperty) - Method in class edu.stanford.smi.protegex.owl.inference.reasoner.AbstractProtegeReasoner
getSubProperties(OWLProperty) - Method in interface edu.stanford.smi.protegex.owl.inference.reasoner.ProtegeReasoner
getSubproperties(boolean) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
getSubproperties(boolean) - Method in interface edu.stanford.smi.protegex.owl.model.RDFProperty
  Gets the subproperties of this, and possibly the subproperties of the subproperties etc.
getSubPropertiesOf(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getSubPropertiesOf(OWLModel, URI) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getSubPropertiesOf(OWLProperty) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getSubpropertyCount() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
getSubpropertyCount() - Method in interface edu.stanford.smi.protegex.owl.model.RDFProperty
  Gets the number of properties that have this as rdfs:subPropertyOf.
getSubpropertyPane() - Method in class edu.stanford.smi.protegex.owl.ui.properties.OWLPropertyHierarchyPanel
getSubslots(Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
getSubslots() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeSlot
  Deprecated.
getSubsumptionRelationship(OWLClass, OWLClass, ReasonerTaskListener) - Method in class edu.stanford.smi.protegex.owl.inference.dig.DefaultProtegeDIGReasoner
getSubsumptionRelationship(OWLClass, OWLClass) - Method in class edu.stanford.smi.protegex.owl.inference.dig.DefaultProtegeDIGReasoner
getSubsumptionRelationship(OWLClass, OWLClass, ReasonerTaskListener) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.DefaultProtegeOWLReasoner
getSubsumptionRelationship(OWLClass, OWLClass, ReasonerTaskListener) - Method in interface edu.stanford.smi.protegex.owl.inference.protegeowl.ProtegeOWLReasoner
  Deprecated. Gets the subsumption relationship between two classes - the subsumption relationship of cls1 to cls2.
getSubsumptionRelationship(OWLClass, OWLClass) - Method in class edu.stanford.smi.protegex.owl.inference.reasoner.AbstractProtegeReasoner
GetSubsumptionRelationshipTask - Class in edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: May 6, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
GetSubsumptionRelationshipTask(ProtegeOWLReasoner, OWLClass, OWLClass) - Constructor for class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.GetSubsumptionRelationshipTask
GetSuffix(int) - Method in class edu.stanford.smi.protegex.owl.model.classparser.compact.JavaCharStream
GetSuffix(int) - Method in class edu.stanford.smi.protegex.owl.model.classparser.dl.JavaCharStream
GetSuffix(int) - Method in class edu.stanford.smi.protegex.owl.model.classparser.manchester.JavaCharStream
getSuffixes() - Method in class edu.stanford.smi.protegex.owl.jena.CreateOWLProjectFromFilePlugin
getSuggestions(OWLModel, OWLClassParseException) - Static method in class edu.stanford.smi.protegex.owl.ui.clsdesc.manchester.SuggestionFactory
getSuitability(RDFSNamedClass, RDFProperty) - Method in class edu.stanford.smi.protegex.owl.ui.metadata.AnnotationsWidgetMetadata
getSuitability(RDFSNamedClass, RDFProperty) - Method in class edu.stanford.smi.protegex.owl.ui.widget.DataRangeFieldWidgetMetadata
getSuitability(RDFSNamedClass, RDFProperty) - Method in class edu.stanford.smi.protegex.owl.ui.widget.HeaderWidgetMetadata
getSuitability(RDFSNamedClass, RDFProperty) - Method in class edu.stanford.smi.protegex.owl.ui.widget.MultiLiteralWidgetMetadata
getSuitability(RDFSNamedClass, RDFProperty) - Method in class edu.stanford.smi.protegex.owl.ui.widget.MultiResourceWidgetMetadata
getSuitability(RDFSNamedClass, RDFProperty) - Method in class edu.stanford.smi.protegex.owl.ui.widget.OWLDateTimeWidgetMetadata
getSuitability(RDFSNamedClass, RDFProperty) - Method in class edu.stanford.smi.protegex.owl.ui.widget.OWLDateWidgetMetadata
getSuitability(RDFSNamedClass, RDFProperty) - Method in class edu.stanford.smi.protegex.owl.ui.widget.OWLTimeWidgetMetadata
getSuitability(RDFSNamedClass, RDFProperty) - Method in interface edu.stanford.smi.protegex.owl.ui.widget.OWLWidgetMetadata
  Gets the suitability index of a widget for a given class/property pair.
getSuitability(RDFSNamedClass, RDFProperty) - Method in class edu.stanford.smi.protegex.owl.ui.widget.RDFListWidgetMetadata
getSuitability(RDFSNamedClass, RDFProperty) - Method in class edu.stanford.smi.protegex.owl.ui.widget.RDFSSubClassOfWidgetMetadata
getSuitability(RDFSNamedClass, RDFProperty) - Method in class edu.stanford.smi.protegex.owl.ui.widget.SingleLiteralAreaWidgetMetadata
getSuitability(RDFSNamedClass, RDFProperty) - Method in class edu.stanford.smi.protegex.owl.ui.widget.SingleLiteralWidgetMetadata
getSuitability(RDFSNamedClass, RDFProperty) - Method in class edu.stanford.smi.protegex.owl.ui.widget.SingleResourceWidgetMetadata
getSuitableReasonerMap(OWLModel) - Static method in class edu.stanford.smi.protegex.owl.inference.protegeowl.ReasonerPluginManager
getSuitableReasonerNames(OWLModel) - Static method in class edu.stanford.smi.protegex.owl.inference.protegeowl.ReasonerPluginManager
getSuitableReasonerPluginClasses(Project) - Static method in class edu.stanford.smi.protegex.owl.inference.protegeowl.ReasonerPluginManager
getSuitableWidgetClassNames(Cls, Slot, Facet) - Method in class edu.stanford.smi.protegex.owl.ui.widget.OWLWidgetMapper
getSummaryText() - Method in class edu.stanford.smi.protegex.owl.ui.search.finder.BasicFind
getSummaryText() - Method in interface edu.stanford.smi.protegex.owl.ui.search.finder.Find
getSuperclassCount() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
getSuperclassCount() - Method in interface edu.stanford.smi.protegex.owl.model.RDFSClass
  Gets the number of (direct) superclasses of this.
getSuperclasses(OWLClass, ReasonerTaskListener) - Method in class edu.stanford.smi.protegex.owl.inference.dig.DefaultProtegeDIGReasoner
getSuperclasses(OWLClass) - Method in class edu.stanford.smi.protegex.owl.inference.dig.DefaultProtegeDIGReasoner
getSuperclasses(OWLClass, ReasonerTaskListener) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.DefaultProtegeOWLReasoner
getSuperclasses(OWLClass, ReasonerTaskListener) - Method in interface edu.stanford.smi.protegex.owl.inference.protegeowl.ProtegeOWLReasoner
  Deprecated. Gets the (direct) inferred superclasses of the specified class.
getSuperclasses(OWLClass) - Method in class edu.stanford.smi.protegex.owl.inference.reasoner.AbstractProtegeReasoner
getSuperclasses(OWLClass) - Method in interface edu.stanford.smi.protegex.owl.inference.reasoner.ProtegeReasoner
  Gets the (direct) inferred superclasses of the specified class.
getSuperclasses(boolean) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
getSuperclasses() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeCls
  Deprecated.
getSuperclasses(Cls) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
getSuperclasses(boolean) - Method in interface edu.stanford.smi.protegex.owl.model.RDFSClass
  Gets the superclasses of this, optionally including the superclasses of the superclasses etc.
getSuperclassesIcon() - Static method in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
getSuperClassesOf(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getSuperClassesOf(OWLModel, URI) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getSuperClassesOf(OWLNamedClass) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getSuperclassesOfIntersection(OWLClass[], ReasonerTaskListener) - Method in class edu.stanford.smi.protegex.owl.inference.dig.DefaultProtegeDIGReasoner
getSuperclassesOfIntersection(OWLClass[]) - Method in class edu.stanford.smi.protegex.owl.inference.dig.DefaultProtegeDIGReasoner
getSuperclassesOfIntersection(OWLClass[], ReasonerTaskListener) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.DefaultProtegeOWLReasoner
getSuperclassesOfIntersection(OWLClass[], ReasonerTaskListener) - Method in interface edu.stanford.smi.protegex.owl.inference.protegeowl.ProtegeOWLReasoner
  Deprecated. Gets the inferred superclasses of the intersection of the list of specified classes.
getSuperclassesOfIntersection(OWLClass[]) - Method in class edu.stanford.smi.protegex.owl.inference.reasoner.AbstractProtegeReasoner
getSuperclassIcon() - Static method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTableItem
GetSuperConceptsTask - Class in edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Aug 17, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
GetSuperConceptsTask(OWLClass, ProtegeOWLReasoner) - Constructor for class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.GetSuperConceptsTask
GetSuperConceptsTask - Class in edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Aug 17, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
GetSuperConceptsTask(OWLClass, ProtegeReasoner) - Constructor for class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.GetSuperConceptsTask
getSuperProperties(OWLProperty) - Method in class edu.stanford.smi.protegex.owl.inference.reasoner.AbstractProtegeReasoner
getSuperProperties(OWLProperty) - Method in interface edu.stanford.smi.protegex.owl.inference.reasoner.ProtegeReasoner
getSuperproperties(boolean) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
getSuperproperties(boolean) - Method in interface edu.stanford.smi.protegex.owl.model.RDFProperty
  Gets the superproperties of this, and possibly the superproperties of the superproperties etc.
getSuperPropertiesOf(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getSuperPropertiesOf(OWLModel, URI) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getSuperPropertiesOf(OWLProperty) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getSuperpropertiesPanel() - Method in class edu.stanford.smi.protegex.owl.ui.properties.OWLPropertyHierarchyPanel
getSuperpropertyCount() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
getSuperpropertyCount() - Method in interface edu.stanford.smi.protegex.owl.model.RDFProperty
  Gets the number of values of the rdfs:subPropertyOf properties.
getSuperslots(Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
getSuperslots() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeSlot
  Deprecated.
getSupportedAskElements() - Method in class edu.stanford.smi.protegex.owl.inference.dig.reasoner.DIGReasonerIdentity
  Gets a `Collection` that holds the supported ask elements.
getSupportedLanguageElements() - Method in class edu.stanford.smi.protegex.owl.inference.dig.reasoner.DIGReasonerIdentity
  Gets a `Collection` that holds the supported langauge elements.
getSupportedRestrictionMetaClses(OWLModel) - Static method in class edu.stanford.smi.protegex.owl.ui.profiles.ProfilesManager
getSupportedTellElements() - Method in class edu.stanford.smi.protegex.owl.inference.dig.reasoner.DIGReasonerIdentity
  Gets a `Collection` that holds the supported tell elements.
getSWRLBProperties() - Method in class edu.stanford.smi.protegex.owl.swrl.model.SWRLFactory
getSWRLBrowserText(RDFObject) - Static method in class edu.stanford.smi.protegex.owl.swrl.model.impl.SWRLUtil
  This replaces RDFSLiteral.getBrowserText() for the SWRL editor.
getSWRLBrowserText(Object, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.model.impl.SWRLUtil
getSWRLClasses() - Method in class edu.stanford.smi.protegex.owl.swrl.model.SWRLFactory
getSWRLImps(OWLModel) - Method in class edu.stanford.smi.protegex.owl.inference.util.ReasonerUtil
getSWRLPluginGUI() - Method in interface edu.stanford.smi.protegex.owl.swrl.ui.P3SWRLTabPluginCreator
getSWRLProperties() - Method in class edu.stanford.smi.protegex.owl.swrl.model.SWRLFactory
getSWRLTabPlugin() - Method in class edu.stanford.smi.protegex.owl.swrl.P3SWRLTabPluginRegistrationRecord
getSWRLTextArea() - Method in class edu.stanford.smi.protegex.owl.swrl.ui.widget.SWRLRuleSlotWidget
getSwrlTextAreaText() - Method in class edu.stanford.smi.protegex.owl.swrl.ui.widget.SWRLRuleSlotWidget
getSymbol(OWLAnonymousClass) - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.AbstractOWLClassDisplay
getSymbol() - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.dl.DLSymbolGenerator
getSymbol(OWLAnonymousClass) - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.dl.DLSyntaxClassDisplay
getSymbol(OWLAnonymousClass) - Method in interface edu.stanford.smi.protegex.owl.model.classdisplay.OWLClassDisplay
  Gets the keyword for a class of a given type.
getSymbolCellEditor() - Method in class edu.stanford.smi.protegex.owl.ui.owltable.SymbolTable
getSymbolColumnIndex() - Method in class edu.stanford.smi.protegex.owl.swrl.ui.table.SWRLTableModel
getSymbolColumnIndex() - Method in class edu.stanford.smi.protegex.owl.ui.classform.component.property.PropertyFormTableModel
getSymbolColumnIndex() - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.DisjointClassesTableModel
getSymbolColumnIndex() - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTableModel
getSymbolColumnIndex() - Method in class edu.stanford.smi.protegex.owl.ui.owltable.AbstractOWLTableModel
getSymbolColumnIndex() - Method in interface edu.stanford.smi.protegex.owl.ui.owltable.SymbolTableModel
getSymbolEditor() - Method in class edu.stanford.smi.protegex.owl.ui.code.SymbolPanel
getSymbolEditorComponent() - Method in class edu.stanford.smi.protegex.owl.ui.owltable.SymbolTable
getSymbolEditorHandler() - Method in class edu.stanford.smi.protegex.owl.ui.code.SymbolEditorComponent
getSymbolPanel() - Method in class edu.stanford.smi.protegex.owl.ui.owltable.SymbolTable
getSymbolTableModel() - Method in class edu.stanford.smi.protegex.owl.ui.owltable.SymbolTable
getSystemAnnotationProperties() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getSystemAnnotationProperties() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets the pre-defined system annotation slots such as rdfs:comment.
getSystemFrames() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getSystemFrames() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
getSystemTripleStore() - Method in class edu.stanford.smi.protegex.owl.model.triplestore.impl.TripleStoreModelImpl
getSystemTripleStore() - Method in interface edu.stanford.smi.protegex.owl.model.triplestore.TripleStoreModel
  Gets the System Triple Store.
getSystemTripleStore() - Method in class edu.stanford.smi.protegex.owl.server.triplestore.ClientTripleStoreModel
getSystemTripleStore() - Method in class edu.stanford.smi.protegex.owl.server.triplestore.Package
getTabbedPane(OWLModel) - Static method in class edu.stanford.smi.protegex.owl.ui.results.ResultsPanelManager
getTabbedPane() - Method in class edu.stanford.smi.protegex.owl.ui.widget.MultiWidgetPropertyWidget
getTable() - Method in class edu.stanford.smi.protegex.owl.database.CreateOWLDatabaseProjectPlugin
getTable() - Method in class edu.stanford.smi.protegex.owl.database.creator.AbstractOwlDatabaseCreator
getTable() - Method in interface edu.stanford.smi.protegex.owl.database.OWLDatabasePlugin
getTable() - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.ClassDescriptionWidget
getTable() - Method in class edu.stanford.smi.protegex.owl.ui.components.triples.AbstractTriplesComponent
getTable() - Method in class edu.stanford.smi.protegex.owl.ui.conditions.AbstractConditionsWidget
getTable() - Method in class edu.stanford.smi.protegex.owl.ui.matrix.MatrixPanel
getTable() - Method in class edu.stanford.smi.protegex.owl.ui.testing.OWLTestResultsPanel
getTableCellEditor() - Method in class edu.stanford.smi.protegex.owl.ui.matrix.AnnotationPropertyMatrixColumn
getTableCellEditor() - Method in interface edu.stanford.smi.protegex.owl.ui.matrix.EditableMatrixColumn
getTableCellEditor() - Method in class edu.stanford.smi.protegex.owl.ui.matrix.NameMatrixColumn
getTableCellEditorComponent(JTable, Object, boolean, int, int) - Method in class edu.stanford.smi.protegex.owl.ui.code.SymbolCellEditor
getTableCellEditorComponent(JTable, Object, boolean, int, int) - Method in class edu.stanford.smi.protegex.owl.ui.components.annotations.AnnotationsLangEditor
getTableCellEditorComponent(JTable, Object, boolean, int, int) - Method in class edu.stanford.smi.protegex.owl.ui.components.annotations.AnnotationsValueEditor
getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class edu.stanford.smi.protegex.owl.ui.components.annotations.AnnotationsValueRenderer
getTableModel() - Method in class edu.stanford.smi.protegex.owl.ui.classform.component.property.PropertyFormTable
getTableModel() - Method in class edu.stanford.smi.protegex.owl.ui.clsproperties.RDFPropertiesTable
getTableModel() - Method in class edu.stanford.smi.protegex.owl.ui.components.literaltable.LiteralTable
getTableModel() - Method in class edu.stanford.smi.protegex.owl.ui.components.triples.AbstractTriplesComponent
getTableModel() - Method in class edu.stanford.smi.protegex.owl.ui.components.triples.TriplesTable
getTableModel() - Method in class edu.stanford.smi.protegex.owl.ui.matrix.MatrixPanel
getTableModel() - Method in class edu.stanford.smi.protegex.owl.ui.testing.OWLTestResultsPanel
getTableToOntologyMap() - Method in class edu.stanford.smi.protegex.owl.repository.impl.DatabaseRepository
getTableToOntologyMap(Repository) - Method in class edu.stanford.smi.protegex.owl.ui.repository.wizard.impl.DatabaseWizardPanel
getTabName() - Method in class edu.stanford.smi.protegex.owl.inference.ui.ReasonerWarningPanel
getTabName() - Method in class edu.stanford.smi.protegex.owl.swrl.ui.table.SWRLResultsPanel
getTabName() - Method in class edu.stanford.smi.protegex.owl.ui.matrix.MatrixPanel
getTabName() - Method in class edu.stanford.smi.protegex.owl.ui.query.SPARQLResultsPanel
getTabName() - Method in class edu.stanford.smi.protegex.owl.ui.results.ResultsPanel
getTabName() - Method in class edu.stanford.smi.protegex.owl.ui.search.finder.RetainFindResultsPanel
getTabName() - Method in class edu.stanford.smi.protegex.owl.ui.search.FindUsagePanel
getTabName() - Method in class edu.stanford.smi.protegex.owl.ui.subsumption.ChangedClassesPanel
getTabName() - Method in class edu.stanford.smi.protegex.owl.ui.testing.OWLTestResultsPanel
getTabSize(int) - Method in class edu.stanford.smi.protegex.owl.model.classparser.compact.JavaCharStream
getTabSize(int) - Method in class edu.stanford.smi.protegex.owl.model.classparser.dl.JavaCharStream
getTabSize(int) - Method in class edu.stanford.smi.protegex.owl.model.classparser.manchester.JavaCharStream
getTaskManager() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getTaskManager() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets the `TaskManager` that can be used for executing tasks that take a long time.
getTaskSize() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.AbstractSingleConceptWithConceptCollectionResultTask
getTaskSize() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.ClassifyTaxonomyTask
getTaskSize() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.GetConceptIntersectionSuperclassesTask
getTaskSize() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.GetConceptSatisfiableTask
getTaskSize() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.GetIndividualInferredTypesTask
getTaskSize() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.GetIndividualsBelongingToConceptTask
getTaskSize() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.GetSubsumptionRelationshipTask
getTaskSize() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.IsConceptIntersectionSatisfiableTask
getTaskSize() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.IsDisjointToTask
  Gets the size of the task.
getTaskSize() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.IsSubsumedByTask
  Gets the size of the task.
getTaskSize() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.ResetInferredHierarchyTask
getTaskSize() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.SynchronizeReasonerTask
getTaskSize() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.UpdateEquivalentClassesTask
getTaskSize() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.UpdateInconsistentClassesTask
getTaskSize() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.UpdateInferredHierarchyTask
getTaskSize() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.UpdateInferredTypesTask
  Gets the size of the task.
getTaskSize() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.AbstractSingleConceptWithConceptCollectionResultTask
getTaskSize() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.ClassifyTaxonomyTask
getTaskSize() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.GetConceptSatisfiableTask
getTaskSize() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.GetIndividualInferredTypesTask
getTaskSize() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.GetIndividualPropertyValuesTask
getTaskSize() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.GetIndividualsBelongingToConceptTask
getTaskSize() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.IsConceptIntersectionSatisfiableTask
getTaskSize() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.IsDisjointToTask
  Gets the size of the task.
getTaskSize() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.IsSubsumedByTask
  Gets the size of the task.
getTaskSize() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.ResetInferredHierarchyTask
getTaskSize() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.SynchronizeReasonerTask
getTaskSize() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.UpdateEquivalentClassesTask
getTaskSize() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.UpdateInconsistentClassesTask
getTaskSize() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.UpdateInferredHierarchyTask
getTaskSize() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.UpdateInferredTypesTask
  Gets the size of the task.
getTaskSize() - Method in interface edu.stanford.smi.protegex.owl.inference.protegeowl.task.ReasonerTask
  Gets the size of the task.
getTemplateFacets(Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeCls
  Deprecated. no OWL equivalent
getTemplateFacets(Cls, Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not supported in OWL
getTemplateFacetValue(Slot, Facet) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeCls
  Deprecated. no OWL equivalent
getTemplateFacetValue(Cls, Slot, Facet) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not supported in OWL
getTemplateFacetValues(Slot, Facet) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeCls
  Deprecated. no OWL equivalent
getTemplateFacetValues(Cls, Slot, Facet) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not supported in OWL
getTemplateSlotAllowedClses(Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeCls
  Deprecated.
getTemplateSlotAllowedClses(Cls, Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not supported in OWL
getTemplateSlotAllowedParents(Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeCls
  Deprecated. no OWL equivalent
getTemplateSlotAllowedParents(Cls, Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not supported in OWL
getTemplateSlotAllowedValues(Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeCls
  Deprecated. no OWL equivalent
getTemplateSlotAllowedValues(Cls, Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not supported in OWL
getTemplateSlotAllowsMultipleValues(Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeCls
  Deprecated. no OWL equivalent
getTemplateSlotAllowsMultipleValues(Cls, Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not supported in OWL
getTemplateSlotDefaultValues(Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeCls
  Deprecated. no OWL equivalent
getTemplateSlotDefaultValues(Cls, Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not supported in OWL
getTemplateSlotDocumentation(Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeCls
  Deprecated. no OWL equivalent
getTemplateSlotDocumentation(Cls, Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not supported in OWL
getTemplateSlotMaximumCardinality(Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeCls
  Deprecated. no OWL equivalent
getTemplateSlotMaximumCardinality(Cls, Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not supported in OWL
getTemplateSlotMaximumValue(Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeCls
  Deprecated. no OWL equivalent
getTemplateSlotMaximumValue(Cls, Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not supported in OWL
getTemplateSlotMinimumCardinality(Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeCls
  Deprecated. no OWL equivalent
getTemplateSlotMinimumCardinality(Cls, Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not supported in OWL
getTemplateSlotMinimumValue(Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeCls
  Deprecated. no OWL equivalent
getTemplateSlotMinimumValue(Cls, Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not supported in OWL
getTemplateSlots() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeCls
  Deprecated.
getTemplateSlots(Cls) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
getTemplateSlotValue(Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeCls
  Deprecated. no OWL equivalent
getTemplateSlotValue(Cls, Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not supported in OWL
getTemplateSlotValues(Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeCls
  Deprecated. no OWL equivalent
getTemplateSlotValues(Cls, Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not supported in OWL
getTemplateSlotValueType(Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeCls
  Deprecated. no OWL equivalent
getTemplateSlotValueType(Cls, Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not supported in OWL
getTestIcon() - Static method in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
getTestResultsPanel(OWLModel, List) - Method in class edu.stanford.smi.protegex.owl.ui.query.FindAssertionsAction
getTestResultsPanel(OWLModel, List) - Method in class edu.stanford.smi.protegex.owl.ui.testing.AbstractOWLTestAction
getTestResultsPanel(OWLModel, List) - Method in class edu.stanford.smi.protegex.owl.ui.testing.OWLTestInstanceAction
getTestResultsPanel(OWLModel, List) - Method in class edu.stanford.smi.protegex.owl.ui.testing.ShowTodoListAction
getTestSettingsIcon() - Static method in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
getText() - Method in interface edu.stanford.smi.protegex.owl.ui.code.SymbolEditor
  Gets the currently entered text.
getText() - Method in class edu.stanford.smi.protegex.owl.ui.code.SymbolEditorComponent
getText(DatabaseProperty) - Method in class edu.stanford.smi.protegex.owl.ui.repository.wizard.impl.DatabaseWizardPanel
getText() - Method in class edu.stanford.smi.protegex.owl.ui.widget.HTMLEditorPanel
getTextComponent() - Method in class edu.stanford.smi.protegex.owl.swrl.ui.table.SWRLSymbolEditor
getTextComponent() - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.ClassDescriptionEditorComponent
getTextComponent() - Method in class edu.stanford.smi.protegex.owl.ui.code.SymbolEditorComponent
  Gets the JTextComponent that does the editing.
getTextComponent() - Method in class edu.stanford.smi.protegex.owl.ui.components.singleliteral.AbstractSingleLiteralComponent
getTextComponent() - Method in class edu.stanford.smi.protegex.owl.ui.search.finder.ResourceFinder
getTime() - Method in class edu.stanford.smi.protegex.owl.ui.widget.TimePanel
getTimeString(Date) - Static method in class edu.stanford.smi.protegex.owl.model.impl.XMLSchemaDatatypes
getTimeString(int, int, int) - Static method in class edu.stanford.smi.protegex.owl.model.impl.XMLSchemaDatatypes
getTitle() - Method in class edu.stanford.smi.protegex.owl.model.AbstractTask
getTitle() - Method in interface edu.stanford.smi.protegex.owl.model.Task
  Gets the title for this task.
getTitle() - Method in class edu.stanford.smi.protegex.owl.ui.cls.AssertedClassesPanel
getTitle() - Method in interface edu.stanford.smi.protegex.owl.ui.cls.Hierarchy
  Gets the title of this instance (e.g.
getTitle() - Method in class edu.stanford.smi.protegex.owl.ui.cls.HierarchyPanel
getTitle() - Method in class edu.stanford.smi.protegex.owl.ui.existential.ExistentialTreePanel
getTitle() - Method in class edu.stanford.smi.protegex.owl.ui.explorer.ExplorerTreePanel
getTitle() - Method in class edu.stanford.smi.protegex.owl.ui.subsumption.AssertedSubsumptionTreePanel
getTitle() - Method in class edu.stanford.smi.protegex.owl.ui.subsumption.HiddenClassesPanel
getTitle() - Method in class edu.stanford.smi.protegex.owl.ui.subsumption.InferredSubsumptionTreePanel
getTitleString(Instance, String) - Method in class edu.stanford.smi.protegex.owl.ui.resourcedisplay.ResourceDisplay
getTodoAnnotationPrefix() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getTodoAnnotationPrefix() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets the prefix used to distinguish "to-do" list items from other values of the to-do list property.
getTodoAnnotationProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getTodoAnnotationProperty() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets the (annotation) slot that is used to represent "to-do" list items in this knowledge base.
getTODOIcon() - Static method in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
getTODOListItems(RDFResource) - Static method in class edu.stanford.smi.protegex.owl.testing.todo.TodoAnnotationOWLTest
getTodoPrefixSlotName() - Static method in class edu.stanford.smi.protegex.owl.model.ProtegeNames
getTodoPropertySlotName() - Static method in class edu.stanford.smi.protegex.owl.model.ProtegeNames
getToken(int) - Method in class edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxParser
getToken(int) - Method in class edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParser
getToolBar() - Method in class edu.stanford.smi.protegex.owl.ui.metadata.RDFResourceNameWidget
  Deprecated.
getToolbarPath() - Method in class edu.stanford.smi.protegex.owl.inference.ui.action.CheckConsistencyAction
getToolbarPath() - Method in class edu.stanford.smi.protegex.owl.inference.ui.action.ClassifyTaxonomyAction
getToolbarPath() - Method in class edu.stanford.smi.protegex.owl.inference.ui.action.ComputeInferredTypesAction
getToolbarPath() - Method in class edu.stanford.smi.protegex.owl.ui.actions.AbstractOWLModelAction
getToolbarPath() - Method in interface edu.stanford.smi.protegex.owl.ui.actions.OWLModelAction
  Gets the path to the tool bar location of this action.
getToolbarPath() - Method in class edu.stanford.smi.protegex.owl.ui.menu.preferences.PreferencesAction
getToolbarPath() - Method in class edu.stanford.smi.protegex.owl.ui.testing.AbstractOWLModelTestAction
getToolTip() - Method in class edu.stanford.smi.protegex.owl.swrl.P3SWRLTabPluginRegistrationRecord
getToolTipText(RDFResource) - Method in class edu.stanford.smi.protegex.owl.swrl.ui.table.SWRLTable
getToolTipText(RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.classform.component.property.PropertyFormTable
getToolTipText(MouseEvent) - Method in class edu.stanford.smi.protegex.owl.ui.clsproperties.PropertyRestrictionsTree
getToolTipText(MouseEvent) - Method in class edu.stanford.smi.protegex.owl.ui.components.TooltippedSelectableList
getToolTipText(RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.owltable.OWLTable
getToolTipText(MouseEvent) - Method in class edu.stanford.smi.protegex.owl.ui.owltable.SymbolTable
getToolTipText(RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.owltable.SymbolTable
getToolTipText(MouseEvent) - Method in class edu.stanford.smi.protegex.owl.ui.properties.domain.OWLDomainTable
getToolTipText(MouseEvent) - Method in class edu.stanford.smi.protegex.owl.ui.subsumption.TooltippedSelectableTree
getToolTipText(RDFSClass) - Method in class edu.stanford.smi.protegex.owl.ui.tooltips.ClassDescriptionToolTipGenerator
getToolTipText(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.ui.tooltips.ClassDescriptionToolTipGenerator
getToolTipText(RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.tooltips.ClassDescriptionToolTipGenerator
getToolTipText(RDFSClass) - Method in class edu.stanford.smi.protegex.owl.ui.tooltips.HomeOntologyToolTipGenerator
getToolTipText(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.ui.tooltips.HomeOntologyToolTipGenerator
getToolTipText(RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.tooltips.HomeOntologyToolTipGenerator
getToolTipText(RDFSClass) - Method in interface edu.stanford.smi.protegex.owl.ui.widget.OWLToolTipGenerator
  Gets a tool tip text for a given RDFSClass.
getToolTipText(RDFProperty) - Method in interface edu.stanford.smi.protegex.owl.ui.widget.OWLToolTipGenerator
  Gets a tool tip text for a given RDFProperty.
getToolTipText(RDFResource) - Method in interface edu.stanford.smi.protegex.owl.ui.widget.OWLToolTipGenerator
getTopLevelContainer(OWLModel) - Static method in class edu.stanford.smi.protegex.owl.ui.ProtegeUI
getTopLevelContainer(Project) - Static method in class edu.stanford.smi.protegex.owl.ui.ProtegeUI
getTopLevelObjectProperties(OWLModel) - Static method in class edu.stanford.smi.protegex.owl.ui.properties.OWLAnnotationPropertySubpropertyRoot
getTopLevelObjectProperties(OWLModel) - Static method in class edu.stanford.smi.protegex.owl.ui.properties.OWLObjectPropertySubpropertyRoot
getTopLevelProperties(OWLModel) - Static method in class edu.stanford.smi.protegex.owl.ui.properties.OWLDatatypePropertySubpropertyRoot
getTopOWLOntologyClass() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getTopOWLOntologyURISlot() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getTopTripleStore() - Method in class edu.stanford.smi.protegex.owl.model.triplestore.impl.TripleStoreModelImpl
getTopTripleStore() - Method in interface edu.stanford.smi.protegex.owl.model.triplestore.TripleStoreModel
  Gets the "top" TripleStore, which is the first user-editable TripleStore, from which all imports start.
getTopTripleStore() - Method in class edu.stanford.smi.protegex.owl.server.triplestore.ClientTripleStoreModel
getToSlot() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getTranslator() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.AbstractReasonerTask
  Gets the translator that should be used to convert Protege-OWL to DIG and vice versa
getTree() - Method in interface edu.stanford.smi.protegex.owl.ui.actions.TreePanel
getTree() - Method in class edu.stanford.smi.protegex.owl.ui.cls.AssertedClassesPanel
getTree() - Method in class edu.stanford.smi.protegex.owl.ui.cls.ClassTreeComponent
getTree() - Method in class edu.stanford.smi.protegex.owl.ui.cls.OWLSubclassPane
getTree() - Method in class edu.stanford.smi.protegex.owl.ui.existential.ExistentialTreePanel
getTree() - Method in class edu.stanford.smi.protegex.owl.ui.explorer.ExplorerTreePanel
getTree() - Method in class edu.stanford.smi.protegex.owl.ui.individuals.IndividualsTabClassesPanel
getTree() - Method in class edu.stanford.smi.protegex.owl.ui.properties.OWLSubpropertyPane
getTree() - Method in class edu.stanford.smi.protegex.owl.ui.subsumption.SubsumptionTreePanel
getTreeCellEditorComponent(JTree, Object, boolean, boolean, boolean, int) - Method in class edu.stanford.smi.protegex.owl.ui.cls.ClassNameTreeCellEditor
getTreeCellEditorComponent(JTree, Object, boolean, boolean, boolean, int) - Method in class edu.stanford.smi.protegex.owl.ui.code.SymbolCellEditor
getTreeCellRendererComponent(JTree, Object, boolean, boolean, boolean, int, boolean) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.log.DefaultConceptConsistencyLogRecord
  Sets the value of the current tree cell to `value`.
getTreeCellRendererComponent(JTree, Object, boolean, boolean, boolean, int, boolean) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.log.DIGErrorExceptionLogRecord
getTreeCellRendererComponent(JTree, Object, boolean, boolean, boolean, int, boolean) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.log.MessageLogRecord
  Sets the value of the current tree cell to `value`.
getTreeCellRendererComponent(JTree, Object, boolean, boolean, boolean, int, boolean) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.log.OWLInstanceLogRecord
  Sets the value of the current tree cell to `value`.
getTreeCellRendererComponent(JTree, Object, boolean, boolean, boolean, int, boolean) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.log.OWLPropertyLogRecord
getTreeCellRendererComponent(JTree, Object, boolean, boolean, boolean, int, boolean) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.log.ReasonerErrorExceptionLogRecord
getTreeCellRendererComponent(JTree, Object, boolean, boolean, boolean, int, boolean) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.log.ReasonerLogRecordRenderer
  Sets the value of the current tree cell to `value`.
getTreeCellRendererComponent(JTree, Object, boolean, boolean, boolean, int, boolean) - Method in class edu.stanford.smi.protegex.owl.ui.clsproperties.PropertyRestrictionsTreeRenderer
getTreeCellRendererComponent(JTree, Object, boolean, boolean, boolean, int, boolean) - Method in class edu.stanford.smi.protegex.owl.ui.explorer.ExplorerRenderer
getTreeCellRendererComponent(JTree, Object, boolean, boolean, boolean, int, boolean) - Method in class edu.stanford.smi.protegex.owl.ui.metrics.MetricRenderer
getTreePath(JTree, Collection) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.OWLUI
getTripleAction(Class) - Static method in class edu.stanford.smi.protegex.owl.ui.actions.triple.TripleActionManager
getTripleActionClasses() - Static method in class edu.stanford.smi.protegex.owl.ui.actions.triple.TripleActionManager
getTripleObj() - Method in class edu.stanford.smi.protegex.owl.jena.parser.UndefTriple
getTriplePred() - Method in class edu.stanford.smi.protegex.owl.jena.parser.UndefTriple
getTripleProcessor() - Method in class edu.stanford.smi.protegex.owl.jena.parser.GlobalParserCache
getTripleStore() - Method in class edu.stanford.smi.protegex.owl.jena.parser.UndefTriple
getTripleStore(String) - Method in class edu.stanford.smi.protegex.owl.model.triplestore.impl.TripleStoreModelImpl
getTripleStore(String) - Method in interface edu.stanford.smi.protegex.owl.model.triplestore.TripleStoreModel
  Gets the TripleStore with a given name.
getTripleStore(String) - Method in class edu.stanford.smi.protegex.owl.server.triplestore.ClientTripleStoreModel
getTripleStoreByDefaultNamespace(String) - Method in class edu.stanford.smi.protegex.owl.model.triplestore.impl.TripleStoreModelImpl
getTripleStoreByDefaultNamespace(String) - Method in interface edu.stanford.smi.protegex.owl.model.triplestore.TripleStoreModel
  Gets the first TripleStore that uses a given default namespace.
getTripleStoreByDefaultNamespace(String) - Method in class edu.stanford.smi.protegex.owl.server.triplestore.ClientTripleStoreModel
getTripleStoreModel() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getTripleStoreModel() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
getTripleStoreNames() - Method in class edu.stanford.smi.protegex.owl.server.triplestore.Package
getTripleStoreOf(RDFResource, Slot, Object) - Static method in class edu.stanford.smi.protegex.owl.model.triplestore.TripleStoreUtil
  Finds the triple store where a given fact is asserted.
GetTripleStoreOfTripleJob - Class in edu.stanford.smi.protegex.owl.util.job
GetTripleStoreOfTripleJob(RDFResource, Slot, Object) - Constructor for class edu.stanford.smi.protegex.owl.util.job.GetTripleStoreOfTripleJob
getTripleStores() - Method in class edu.stanford.smi.protegex.owl.model.triplestore.impl.TripleStoreModelImpl
getTripleStores() - Method in interface edu.stanford.smi.protegex.owl.model.triplestore.TripleStoreModel
  Gets the TripleStores which provide an RDF triple-based view onto this OWLModel.
getTripleStores() - Method in class edu.stanford.smi.protegex.owl.server.triplestore.ClientTripleStoreModel
getTripleSubj() - Method in class edu.stanford.smi.protegex.owl.jena.parser.UndefTriple
getType() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.log.WarningMessageTestResult
  Gets the type of result.
getType() - Method in class edu.stanford.smi.protegex.owl.testing.DefaultOWLTestResult
getType() - Method in interface edu.stanford.smi.protegex.owl.testing.OWLTestResult
  Gets the type of result.
getType() - Method in class edu.stanford.smi.protegex.owl.ui.cls.AssertedClassesPanel
getType() - Method in interface edu.stanford.smi.protegex.owl.ui.cls.Hierarchy
  Gets the general type if this Hierarchy (e.g.
getType() - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTableItem
getType(int) - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTableModel
  Gets the type of the entry at a certain row.
getType() - Method in class edu.stanford.smi.protegex.owl.ui.existential.ExistentialTreePanel
getType() - Method in class edu.stanford.smi.protegex.owl.ui.explorer.ExplorerTreePanel
getType() - Method in class edu.stanford.smi.protegex.owl.ui.subsumption.SubsumptionTreePanel
getType(RDFResource, TripleStore) - Static method in class edu.stanford.smi.protegex.owl.writer.rdfxml.util.Util
getTypeName() - Method in enum edu.stanford.smi.protegex.owl.model.factory.OWLFactoryClassType
getTypes(Frame) - Method in class edu.stanford.smi.protegex.owl.jena.parser.AbstractStatefulTripleProcessor
getTypesForInstance(Instance) - Method in class edu.stanford.smi.protegex.owl.jena.parser.MultipleTypesInstanceCache
getTypesForInstanceAsSet(Instance) - Method in class edu.stanford.smi.protegex.owl.jena.parser.MultipleTypesInstanceCache
getTypeString() - Method in class edu.stanford.smi.protegex.owl.testing.DefaultOWLTestResult
getTypeText(Instance) - Method in class edu.stanford.smi.protegex.owl.ui.resourcedisplay.InstanceNameComponent
getTypeText(Instance) - Method in class edu.stanford.smi.protegex.owl.ui.resourcedisplay.ResourceDisplay
getTypeUpdateFrameStore() - Method in class edu.stanford.smi.protegex.owl.model.framestore.OWLFrameStoreManager
getUIDescription() - Static method in class edu.stanford.smi.protegex.owl.model.classdisplay.manchester.ManchesterOWLClassDisplay
getUndefTriples(String) - Method in class edu.stanford.smi.protegex.owl.jena.parser.GlobalParserCache
getUndefTripleSize() - Method in class edu.stanford.smi.protegex.owl.jena.parser.GlobalParserCache
getUndefTriplesKeys() - Method in class edu.stanford.smi.protegex.owl.jena.parser.GlobalParserCache
getUndoIcon() - Static method in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
getUnionClassCount() - Method in class edu.stanford.smi.protegex.owl.model.util.ModelMetrics
getUnionDomain() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
getUnionDomain(boolean) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
getUnionDomain() - Method in interface edu.stanford.smi.protegex.owl.model.RDFProperty
  Equivalent to `getUnionDomain(false)`.
getUnionDomain(boolean) - Method in interface edu.stanford.smi.protegex.owl.model.RDFProperty
  Gets the domain of this, with union semantics.
getUnionDomainProperties() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
getUnionDomainProperties(boolean) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
getUnionDomainProperties() - Method in interface edu.stanford.smi.protegex.owl.model.RDFSClass
  Equivalent to `getUnionDomainProperties(false)`.
getUnionDomainProperties(boolean) - Method in interface edu.stanford.smi.protegex.owl.model.RDFSClass
  Gets those properties that have this in their domain, with union semantics.
getUnionRange() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLObjectProperty
getUnionRangeClasses() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
getUnionRangeClasses(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFSNamedClass
getUnionRangeClasses() - Method in interface edu.stanford.smi.protegex.owl.model.RDFProperty
  Gets the range of this with union semantics.
getUnionRangeClasses(RDFProperty) - Method in interface edu.stanford.smi.protegex.owl.model.RDFSNamedClass
  Gets the allowed classes for a given property at this class.
getUniqueFrameName(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getUniqueFrameName(String) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Generates a unique URI for a Frame given a base URI.
getUnreachableSimpleInstances(Collection) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not needed
getUpIcon() - Static method in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
getUpperCaseJavaName() - Method in class edu.stanford.smi.protegex.owl.javacode.RDFPropertyAtClassCode
getUpperCaseJavaName() - Method in class edu.stanford.smi.protegex.owl.javacode.RDFPropertyCode
getURI() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
getURI() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFIndividual
getURI() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
getURI() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFUntypedResource
getURI() - Method in interface edu.stanford.smi.protegex.owl.model.RDFResource
  Gets the full URI of this resource.
getURI(URL, String) - Static method in class edu.stanford.smi.protegex.owl.repository.util.RepositoryUtil
getURI(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getURI() - Static method in class edu.stanford.smi.protegex.owl.ui.forms.AbsoluteLayoutNames
  The namespace of the vocabulary as a string
getURI() - Static method in class edu.stanford.smi.protegex.owl.ui.forms.FormsNames
  The namespace of the vocabulary as a string
getURI() - Static method in class edu.stanford.smi.protegex.owl.ui.forms.ProtegeFormsNames
  The namespace of the vocabulary as a string
getURI(int) - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.imports.ImportsTableModel
getURI() - Static method in class edu.stanford.smi.protegex.owl.ui.profiles.OWLProfiles
  The namespace of the vocabulary as a string
getURI() - Method in class edu.stanford.smi.protegex.owl.ui.triplestore.AddTripleStorePanel
getURIForResourceName(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getURIForResourceName(String) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
getURIFromName(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getURIFromNamespace(String) - Static method in class edu.stanford.smi.protegex.owl.jena.Jena
getURIRow(String) - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.imports.ImportsTableModel
getUrl() - Method in class edu.stanford.smi.protegex.owl.database.CreateOWLDatabaseProjectPlugin
getUrl() - Method in class edu.stanford.smi.protegex.owl.database.creator.AbstractOwlDatabaseCreator
getUrl() - Method in interface edu.stanford.smi.protegex.owl.database.OWLDatabasePlugin
getURL() - Method in class edu.stanford.smi.protegex.owl.inference.dig.DefaultProtegeDIGReasoner
getURL() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.DefaultProtegeOWLReasoner
getURL() - Method in interface edu.stanford.smi.protegex.owl.inference.protegeowl.ProtegeOWLReasoner
  Deprecated. Gets the URL of the external DIG reasoner.
getUrl() - Method in class edu.stanford.smi.protegex.owl.repository.impl.DatabaseRepository
getURL() - Method in class edu.stanford.smi.protegex.owl.repository.util.FileInputSource
getURL() - Method in interface edu.stanford.smi.protegex.owl.repository.util.InputStreamSource
getURL() - Method in class edu.stanford.smi.protegex.owl.repository.util.URLInputSource
getUsage(int) - Method in class edu.stanford.smi.protegex.owl.ui.search.FindUsageTableModel
getUsedLanguages() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getUsedLanguages() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets the list of language prefixes defined by the user in the owl:Ontology.
getUsedLanguagesSlotName() - Static method in class edu.stanford.smi.protegex.owl.model.ProtegeNames
getUseInferredSuperclasses() - Method in interface edu.stanford.smi.protegex.owl.ui.explorer.ExplorerFilter
  Checks if the tree should display inferred relationships instead of asserted ones.
getUseInferredSuperclasses() - Method in class edu.stanford.smi.protegex.owl.ui.explorer.filter.DefaultExplorerFilter
getUseInferredSuperclasses() - Method in class edu.stanford.smi.protegex.owl.ui.explorer.filter.HiddenClassesFilter
getUseNativeWriter() - Method in class edu.stanford.smi.protegex.owl.jena.JenaFilePanel
getUseNativeWriterCheckBox() - Method in class edu.stanford.smi.protegex.owl.jena.JenaFilePanel
getUser() - Method in class edu.stanford.smi.protegex.owl.repository.impl.DatabaseRepository
getUserDefinedClasses() - Method in class edu.stanford.smi.protegex.owl.model.triplestore.impl.TripleStoreImpl
getUserDefinedClasses() - Method in interface edu.stanford.smi.protegex.owl.model.triplestore.TripleStore
getUserDefinedDirectInstancesOf(RDFSClass, Class<? extends X>) - Method in class edu.stanford.smi.protegex.owl.model.triplestore.impl.TripleStoreImpl
getUserDefinedDirectInstancesOf(RDFSClass, Class<? extends X>) - Method in interface edu.stanford.smi.protegex.owl.model.triplestore.TripleStore
  Returns the direct class instances defined in this triplestore as objects of `X`.
getUserDefinedInstancesOf(RDFSClass, Class<? extends X>) - Method in class edu.stanford.smi.protegex.owl.model.triplestore.impl.TripleStoreImpl
getUserDefinedInstancesOf(RDFSClass, Class<? extends X>) - Method in interface edu.stanford.smi.protegex.owl.model.triplestore.TripleStore
  Returns the all (direct and indirect) class instances defined in this triplestore as objects of `X`.
getUserDefinedOWLDatatypeProperties() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getUserDefinedOWLDatatypeProperties() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets a Collection of all user-defined OWLDatatypeProperties in this knowledge base.
getUserDefinedOWLDatatypeProperties(OWLModel) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getUserDefinedOWLNamedClasses() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getUserDefinedOWLNamedClasses() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets a Collection of all user-defined named OWL classes in this knowledge base.
getUserDefinedOWLNamedClasses(OWLModel) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getUserDefinedOWLObjectProperties() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getUserDefinedOWLObjectProperties() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets a Collection of all user-defined OWLObjectProperties in this knowledge base.
getUserDefinedOWLObjectProperties(OWLModel) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getUserDefinedOWLProperties() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getUserDefinedOWLProperties() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets a Collection of all user-defined OWLProperties in this knowledge base.
getUserDefinedOWLProperties(OWLModel) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
getUserDefinedProperties() - Method in class edu.stanford.smi.protegex.owl.model.triplestore.impl.TripleStoreImpl
getUserDefinedProperties() - Method in interface edu.stanford.smi.protegex.owl.model.triplestore.TripleStore
getUserDefinedRDFIndividuals(boolean) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getUserDefinedRDFIndividuals(boolean) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets all non-system individuals in this OWLModel.
getUserDefinedRDFProperties() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getUserDefinedRDFProperties() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets all user-defined RDF properties in this OWLModel.
getUserDefinedRDFSNamedClasses() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getUserDefinedRDFSNamedClasses() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets all user-defined RDFSClses including the OWLNamedClses.
getUsername() - Method in class edu.stanford.smi.protegex.owl.database.CreateOWLDatabaseProjectPlugin
getUsername() - Method in class edu.stanford.smi.protegex.owl.database.creator.AbstractOwlDatabaseCreator
getUsername() - Method in interface edu.stanford.smi.protegex.owl.database.OWLDatabasePlugin
getUserName() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not needed
getUserName() - Method in interface edu.stanford.smi.protegex.owl.repository.impl.FTPRepositoryPasswordProvider
getUserObject() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.log.WarningMessageTestResult
  Gets the (optional) user object attached to this OWLTestResult.
getUserObject() - Method in class edu.stanford.smi.protegex.owl.testing.DefaultOWLTestResult
getUserObject() - Method in interface edu.stanford.smi.protegex.owl.testing.OWLTestResult
  Gets the (optional) user object attached to this OWLTestResult.
getUseXMLEntities() - Method in class edu.stanford.smi.protegex.owl.writer.rdfxml.util.ProtegeWriterSettings
getValidClasses() - Method in class edu.stanford.smi.protegex.owl.ui.explorer.filter.DefaultExplorerFilter
getValidJavaName(String) - Static method in class edu.stanford.smi.protegex.owl.emf.EMFGenerator
getValidJavaName(String) - Static method in class edu.stanford.smi.protegex.owl.javacode.JavaCodeGenerator
getValidJavaName(String) - Static method in class edu.stanford.smi.protegex.owl.javacode.RDFSClassCode
getValidNamespaceFrameName(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getValidOWLFrameName(AbstractOWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getValidProperty() - Method in class edu.stanford.smi.protegex.owl.ui.explorer.filter.DefaultExplorerFilter
getValue(int) - Method in class edu.stanford.smi.protegex.owl.ui.components.triples.TriplesTableModel
getValue() - Method in class edu.stanford.smi.protegex.owl.ui.metrics.MetricObject
getValueAt(int, int) - Method in class edu.stanford.smi.protegex.owl.swrl.ui.table.SWRLTableModel
getValueAt(int, int) - Method in class edu.stanford.smi.protegex.owl.ui.classform.component.property.PropertyFormTableModel
getValueAt(int, int) - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.DisjointClassesTableModel
getValueAt(int, int) - Method in class edu.stanford.smi.protegex.owl.ui.clsproperties.RDFPropertiesTableModel
getValueAt(int, int) - Method in class edu.stanford.smi.protegex.owl.ui.components.literaltable.LiteralTableModel
getValueAt(int, int) - Method in class edu.stanford.smi.protegex.owl.ui.components.triples.TriplesTableModel
getValueAt(int, int) - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTableModel
getValueAt(int, int) - Method in class edu.stanford.smi.protegex.owl.ui.matrix.MatrixTableModel
getValueAt(int, int) - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.imports.ImportsTableModel
getValueAt(int, int) - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.imports.wizard.AddedPrefixesTableModel
getValueAt(int, int) - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.prefixes.PrefixesTableModel
getValueAt(int, int) - Method in class edu.stanford.smi.protegex.owl.ui.metrics.lang.DLExpressivityTableModel
getValueAt(int, int) - Method in class edu.stanford.smi.protegex.owl.ui.owltable.AbstractOWLTableModel
getValueAt(int, int) - Method in class edu.stanford.smi.protegex.owl.ui.properties.domain.OWLDomainTableModel
getValueAt(int, int) - Method in class edu.stanford.smi.protegex.owl.ui.search.finder.ResultsViewModelFind
getValueAt(int, int) - Method in class edu.stanford.smi.protegex.owl.ui.search.FindUsageTableModel
getValueAt(int, int) - Method in class edu.stanford.smi.protegex.owl.ui.subsumption.ChangedClassesTableModel
getValueAt(int, int) - Method in class edu.stanford.smi.protegex.owl.ui.testing.OWLTestResultsTableModel
getValueAt(int, int) - Method in class edu.stanford.smi.protegex.owl.ui.testing.OWLTestSettingsTableModel
getValueChecking() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not needed
getValueLiterals(List) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getValueLiterals() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFList
getValueLiterals() - Method in interface edu.stanford.smi.protegex.owl.model.RDFList
  Gets the values in this list as RDFSLiterals.
getValues() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFList
getValues(Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not supported in OWL
getValues() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeSlot
  Returns the "template slot values" for a top level slot.
getValues() - Method in interface edu.stanford.smi.protegex.owl.model.RDFList
  Gets the values in this list.
getValues(Instance, Slot) - Method in class edu.stanford.smi.protegex.owl.model.triplestore.impl.TripleStoreImpl
getValues() - Method in class edu.stanford.smi.protegex.owl.ui.individuals.OWLGetOwnSlotValuesBrowserTextJob
getValues() - Method in class edu.stanford.smi.protegex.owl.ui.properties.OWLInversePropertyWidget
getValues() - Method in class edu.stanford.smi.protegex.owl.ui.widget.ExternalResourceURLWidget
getValuesFrom() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLCardinalityBase
getValuesFrom() - Method in interface edu.stanford.smi.protegex.owl.model.OWLCardinalityBase
  If this is a qualified cardinality restriction, then this gets the owl:valuesFrom property value.
getValueType(String) - Static method in class edu.stanford.smi.protegex.owl.model.impl.XMLSchemaDatatypes
getValueType(Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
getValueType() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeSlot
  Deprecated.
getValueTypeURI(ValueType) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getValueTypeURI(ValueType) - Static method in class edu.stanford.smi.protegex.owl.model.impl.XMLSchemaDatatypes
getValueTypeURI(ValueType) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  The inverse of `getValueType`.
getVariable(String) - Method in class edu.stanford.smi.protegex.owl.swrl.model.SWRLFactory
getVariableCls() - Method in class edu.stanford.smi.protegex.owl.swrl.SWRLSystemFrames
getVariableIcon() - Static method in class edu.stanford.smi.protegex.owl.swrl.ui.icons.SWRLIcons
getVariables() - Method in interface edu.stanford.smi.protegex.owl.model.query.QueryResults
  Gets a list of all variables that have been declared in the query.
getVariables() - Method in class edu.stanford.smi.protegex.owl.model.query.SPARQLQueryResults
getVariables() - Method in class edu.stanford.smi.protegex.owl.swrl.model.SWRLFactory
getVersion() - Method in class edu.stanford.smi.protegex.owl.inference.dig.reasoner.DIGReasonerIdentity
  Gets the version of a reaonser.
getVersion() - Static method in class edu.stanford.smi.protegex.owl.resource.OWLText
getVersionInfo() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
getVersionInfo() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFIndividual
getVersionInfo() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
getVersionInfo(Instance) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
getVersionInfo() - Method in interface edu.stanford.smi.protegex.owl.model.RDFResource
  Gets the values of the owl:versionInfo property.
getVersionString() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not needed
getVeryGoodCustomerClass() - Method in class edu.stanford.smi.protegex.owlx.examples.javaDemo.model.MyFactory
getViewIcon() - Static method in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
getViewIcon(String) - Static method in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
getViewIcon(String, Class) - Static method in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
getVisibleAnnotationProperties() - Method in class edu.stanford.smi.protegex.owl.ui.matrix.MatrixTableModel
getVisibleDirectSubclassCount() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeCls
  Deprecated. not needed
getVisibleDirectSubclasses() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeCls
  Deprecated. not needed
getVisibleResources(Iterator) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getVisibleResources(Iterator) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets a list of resources, only containing the visible entries of a given Iterator.
getVisibleTemplateSlots() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeCls
  Deprecated. not needed
getVisibleUserDefinedOWLProperties() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getVisibleUserDefinedOWLProperties() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets a Collection of all user-defined, visible OWLProperties in this knowledge base.
getVisibleUserDefinedRDFProperties() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getVisibleUserDefinedRDFProperties() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets all visible, user-defined RDF properties in this knowledge base.
getWarningMessageIcon() - Static method in class edu.stanford.smi.protegex.owl.inference.ui.icons.InferenceIcons
getWidget(Cls, Instance, Cls) - Method in class edu.stanford.smi.protegex.owl.ui.resourcedisplay.ResourceDisplay
getWidgetClassType() - Method in class edu.stanford.smi.protegex.owl.ui.classform.form.ClassFormSwitchableType
getWidgetClassType() - Method in class edu.stanford.smi.protegex.owl.ui.cls.LogicClassDefinitionWidgetType
getWidgetClassType() - Method in class edu.stanford.smi.protegex.owl.ui.cls.PropertiesClassDefinitionWidgetType
getWidgetClassType() - Method in interface edu.stanford.smi.protegex.owl.ui.cls.SwitchableType
getWidgetClassURI(String) - Method in class edu.stanford.smi.protegex.owl.ui.forms.DefaultWidgetClassMapper
getWidgetClassURI(String) - Method in interface edu.stanford.smi.protegex.owl.ui.forms.WidgetClassMapper
getWidgetIncompleteOrOKTitle() - Method in class edu.stanford.smi.protegex.owl.swrl.ui.widget.SWRLRuleSlotWidget
getWidgetLabel(Slot) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.OWLUI
getWidth() - Method in class edu.stanford.smi.protegex.owl.ui.matrix.AbstractMatrixColumn
getWidth() - Method in class edu.stanford.smi.protegex.owl.ui.matrix.AnnotationPropertyMatrixColumn
getWidth() - Method in class edu.stanford.smi.protegex.owl.ui.matrix.cls.ExistentialMatrixColumn
getWidth() - Method in interface edu.stanford.smi.protegex.owl.ui.matrix.MatrixColumn
getWidth() - Method in class edu.stanford.smi.protegex.owl.ui.matrix.property.PropertyCharacteristicsMatrixColumn
getWidth() - Method in class edu.stanford.smi.protegex.owl.ui.matrix.property.PropertyDomainMatrixColumn
getWidth() - Method in class edu.stanford.smi.protegex.owl.ui.matrix.property.PropertyRangeMatrixColumn
getWriterSettings() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getWriterSettings() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
getXMLBase(InputStream) - Static method in class edu.stanford.smi.protegex.owl.repository.util.XMLBaseExtractor
getXMLBase(String) - Static method in class edu.stanford.smi.protegex.owl.repository.util.XMLBaseExtractor
getXMLBase() - Method in class edu.stanford.smi.protegex.owl.repository.util.XMLBaseExtractor
getXMLBase() - Method in class edu.stanford.smi.protegex.owl.writer.xml.DefaultXMLWriter
getXMLBase() - Method in interface edu.stanford.smi.protegex.owl.writer.xml.XMLWriter
getXmlLiteralType() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getXmlWriter() - Method in class edu.stanford.smi.protegex.owl.writer.rdfxml.rdfwriter.OWLModelWriter
getXSDanyURI() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getXsdAnyURI() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getXSDanyURI() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets the default datatype for URI values.
getXSDbase64Binary() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getXsdBase64Binary() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getXSDbase64Binary() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets the default datatype for byte[] values.
getXSDboolean() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getXsdBoolean() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getXSDboolean() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets the default datatype for boolean values.
getXSDbyte() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getXsdByte() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getXSDbyte() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets the default datatype for byte values.
getXSDDatatype(String) - Static method in class edu.stanford.smi.protegex.owl.model.impl.XMLSchemaDatatypes
getXSDDatatype(RDFSDatatype) - Static method in class edu.stanford.smi.protegex.owl.model.impl.XMLSchemaDatatypes
getXSDDatatypeAlias(XSDDatatype) - Static method in class edu.stanford.smi.protegex.owl.model.impl.XMLSchemaDatatypes
getXSDDatatypeAlias(String) - Static method in class edu.stanford.smi.protegex.owl.model.impl.XMLSchemaDatatypes
getXSDdate() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getXsdDate() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getXSDdate() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets the default datatype for date values.
getXSDdateTime() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getXsdDateTime() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getXSDdateTime() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets the default datatype for timestamp values.
getXSDdecimal() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getXsdDecimal() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getXSDdecimal() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets the default datatype for BigDecimal values.
getXSDdouble() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getXsdDouble() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getXSDdouble() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets the default datatype for double values.
getXSDduration() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getXsdDuration() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getXSDduration() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets the datatype for duration values.
getXSDfloat() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getXsdFloat() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getXSDfloat() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets the default datatype for float values.
getXSDint() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getXsdInt() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getXSDint() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets the default datatype for integer values.
getXSDinteger() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getXsdInteger() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getXSDinteger() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets the default datatype for BigInteger values.
getXSDlong() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getXsdLong() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getXSDlong() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets the default datatype for long values.
getXSDNonNegativeInteger() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getXsdNonNegativeInteger() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getXSDNonNegativeInteger() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets the default datatype for non-negative values
getXSDshort() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getXsdShort() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getXSDshort() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets the default datatype for short values.
getXSDstring() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getXsdString() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getXSDstring() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets the default datatype for string values.
getXSDtime() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
getXsdTime() - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
getXSDtime() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets the default datatype for time values.
getZipCode() - Method in interface edu.stanford.smi.protegex.owlx.examples.javaDemo.model.Customer_
getZipCode() - Method in class edu.stanford.smi.protegex.owlx.examples.javaDemo.model.impl.DefaultCustomer_
getZipCodeProperty() - Method in interface edu.stanford.smi.protegex.owlx.examples.javaDemo.model.Customer_
getZipCodeProperty() - Method in class edu.stanford.smi.protegex.owlx.examples.javaDemo.model.impl.DefaultCustomer_
GLOBAL_REPOSITORY_FILE_NAME - Static variable in class edu.stanford.smi.protegex.owl.repository.util.RepositoryFileManager
globalParserCache - Variable in class edu.stanford.smi.protegex.owl.jena.parser.AbstractStatefulTripleProcessor
GlobalParserCache - Class in edu.stanford.smi.protegex.owl.jena.parser
GlobalParserCache(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.jena.parser.GlobalParserCache
GlobalRepositoriesPanel - Class in edu.stanford.smi.protegex.owl.ui.repository
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Sep 27, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
GlobalRepositoriesPanel(OWLModel, RepositoryManager) - Constructor for class edu.stanford.smi.protegex.owl.ui.repository.GlobalRepositoriesPanel
GoodCustomer - Interface in edu.stanford.smi.protegex.owlx.examples.javaDemo.model
  Generated by Protege-OWL (http://protege.stanford.edu/plugins/owl).
graphBaseFind(TripleMatch) - Method in class edu.stanford.smi.protegex.owl.jena.graph.ProtegeGraph
GRAPHWIDGET_JAVA_CLASS_NAME - Static variable in class edu.stanford.smi.protegex.owl.ui.forms.OWLWidgetPropertyListUtil
GRAPHWIDGET_NAME_SEPARATOR - Static variable in class edu.stanford.smi.protegex.owl.ui.forms.OWLWidgetPropertyListUtil
GRAPHWIDGET_REIFIED_RELATIONSHIP_PROPERTY_NAME - Static variable in class edu.stanford.smi.protegex.owl.ui.forms.OWLWidgetPropertyListUtil
GREATER_THAN - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLConstants.BuiltIns
  Deprecated.
GREATER_THAN - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.CoreBuiltIns
GREATER_THAN_OR_EQUAL - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLConstants.BuiltIns
  Deprecated.
GREATER_THAN_OR_EQUAL - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.CoreBuiltIns
Greatest - Static variable in class edu.stanford.smi.protegex.owl.swrl.model.SQWRLNames
GreatestN - Static variable in class edu.stanford.smi.protegex.owl.swrl.model.SQWRLNames
GROUP - Static variable in class edu.stanford.smi.protegex.owl.javacode.JavaCodeGeneratorAction
GROUP - Static variable in class edu.stanford.smi.protegex.owl.swrl.ui.actions.EnableSWRLTabAction
GROUP - Static variable in interface edu.stanford.smi.protegex.owl.testing.OWLDLTest
GROUP - Static variable in class edu.stanford.smi.protegex.owl.testing.todo.TodoAnnotationOWLTest
GROUP - Static variable in class edu.stanford.smi.protegex.owl.ui.actions.AddRDFTypeAction
GROUP - Static variable in interface edu.stanford.smi.protegex.owl.ui.actions.TreePanel
GROUP - Static variable in class edu.stanford.smi.protegex.owl.ui.cls.AddSubclassAction
GROUP - Static variable in class edu.stanford.smi.protegex.owl.ui.cls.ChangeMetaclassAction
GROUP - Static variable in class edu.stanford.smi.protegex.owl.ui.cls.ChangeMetaclassOfSubclassesAction
  Deprecated. use ChangeMetaclassAction.GROUP
GROUP - Static variable in class edu.stanford.smi.protegex.owl.ui.cls.ExtractTaxonomyAction
GROUP - Static variable in class edu.stanford.smi.protegex.owl.ui.cls.SortSubclassesAction
GROUP - Static variable in class edu.stanford.smi.protegex.owl.ui.properties.actions.ConvertToDatatypePropertyAction
GROUP - Static variable in class edu.stanford.smi.protegex.owl.ui.query.SPARQLOWLModelAction
GROUP - Static variable in class edu.stanford.smi.protegex.owl.ui.refactoring.RefactorResourceAction
GROUP - Static variable in class edu.stanford.smi.protegex.owl.ui.repository.ShowRepositoryEditorAction
GROUP - Static variable in class edu.stanford.smi.protegex.owl.ui.search.SearchNamedClassAction
GroupBy - Static variable in class edu.stanford.smi.protegex.owl.swrl.model.SQWRLNames

## H

H - Static variable in class edu.stanford.smi.protegex.owl.model.util.DLExpressivityChecker
handleAddProperty(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.ui.clsproperties.RDFPropertiesTable
handleCreate() - Method in class edu.stanford.smi.protegex.owl.ui.components.multiresource.MultiResourceList
handleCreate() - Method in class edu.stanford.smi.protegex.owl.ui.components.singleresource.SingleResourceComponent
handleCreateAction() - Method in class edu.stanford.smi.protegex.owl.ui.components.rdflist.RDFListComponent
handleCreateAction(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.ui.components.triples.CreateValueAction
handleCreateAction() - Method in class edu.stanford.smi.protegex.owl.ui.widget.ResourceListWidget
  Deprecated.
handleDelete(Collection) - Method in class edu.stanford.smi.protegex.owl.ui.properties.OWLSubpropertyPane
handleDoubleClick() - Method in class edu.stanford.smi.protegex.owl.ui.clsproperties.RDFPropertiesTable
handleDoubleClick() - Method in class edu.stanford.smi.protegex.owl.ui.components.literaltable.LiteralTableComponent
handleDoubleClick() - Method in class edu.stanford.smi.protegex.owl.ui.components.singleresource.SingleResourceComponent
handleEnter() - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.manchester.ManchesterOWLTextPane
handleEnter() - Method in class edu.stanford.smi.protegex.owl.ui.code.SymbolTextField
handleError(Throwable) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.OWLUI
  Deprecated.
handleError(OWLModel, Throwable) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.OWLUI
handleException(Throwable, JenaOWLModel, URI, Collection<MessageError>) - Method in class edu.stanford.smi.protegex.owl.jena.JenaKnowledgeBaseFactory
handleExportRequest(Project) - Method in class edu.stanford.smi.protegex.owl.jena.export.AbstractJenaFileExportPlugin
handleExportRequest(Project) - Method in class edu.stanford.smi.protegex.owl.jena.export.JenaExportPlugin
handleImportRequest() - Method in class edu.stanford.smi.protegex.owl.jena.importer.JenaImportPlugin
handleInvoke(Method, Object[]) - Method in class edu.stanford.smi.protegex.owl.model.framestore.OWLFrameFactoryInvocationHandler
  Deprecated.
handleInvoke(Method, Object[]) - Method in class edu.stanford.smi.protegex.owl.ui.importstree.server.ActiveOntologyFrameStoreHandler
handleOK() - Method in class edu.stanford.smi.protegex.owl.ui.profiles.EditProfilePanel
handleOutOfMemory() - Static method in class edu.stanford.smi.protegex.owl.inference.util.ReasonerUtil
handlePropertyCreated(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.ui.clsproperties.RDFPropertiesTable
handleRemove() - Method in class edu.stanford.smi.protegex.owl.ui.components.multiresource.MultiResourceComponent
handleRemove() - Method in class edu.stanford.smi.protegex.owl.ui.components.multiresource.MultiResourceList
handleRemove() - Method in class edu.stanford.smi.protegex.owl.ui.components.singleresource.SingleResourceComponent
handleRemove() - Method in class edu.stanford.smi.protegex.owl.ui.components.superclasses.RDFSSubClassOfComponent
handleRemoveProperties() - Method in class edu.stanford.smi.protegex.owl.ui.clsproperties.RDFPropertiesTable
handleSelectionChanged() - Method in class edu.stanford.smi.protegex.owl.ui.components.triples.AbstractTriplesComponent
handlesLiteralTyping() - Method in class edu.stanford.smi.protegex.owl.jena.graph.ProtegeCapabilities
handleUnresolvableImport(OWLModel, TripleStore, URI) - Method in class edu.stanford.smi.protegex.owl.jena.parser.DefaultUnresolvedImportHandler
handleUnresolvableImport(OWLModel, TripleStore, URI) - Method in interface edu.stanford.smi.protegex.owl.jena.parser.UnresolvedImportHandler
  Used by the `ProtegeOWLParser` to obtain an ontology repository that contains the specified ontology.
handleUnresolvableImport(OWLModel, TripleStore, URI) - Method in class edu.stanford.smi.protegex.owl.ui.repository.UnresolvedImportUIHandler
handleViewAction() - Method in class edu.stanford.smi.protegex.owl.ui.components.literaltable.LiteralTableComponent
handleViewAction(String) - Method in class edu.stanford.smi.protegex.owl.ui.widget.ResourceListWidget
  Deprecated.
HAS - Static variable in interface edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParserConstants
HAS_RULE_GROUP - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.Annotations
HAS_VALUE - Static variable in interface edu.stanford.smi.protegex.owl.model.OWLNames.Slot
HAS_VALUE_RESTRICTION - Static variable in interface edu.stanford.smi.protegex.owl.model.OWLNames.Cls
hasAttachedReasoner(OWLModel) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.ReasonerManager
hasCustomer() - Method in class edu.stanford.smi.protegex.owlx.examples.javaDemo.model.impl.DefaultPurchase
hasCustomer() - Method in interface edu.stanford.smi.protegex.owlx.examples.javaDemo.model.Purchase
hasDatatypeRange() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLDatatypeProperty
hasDatatypeRange() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
hasDatatypeRange() - Method in interface edu.stanford.smi.protegex.owl.model.RDFProperty
  Checks whether this can take only primitive, datatype values.
hasDate() - Method in class edu.stanford.smi.protegex.owlx.examples.javaDemo.model.impl.DefaultPurchase
hasDate() - Method in interface edu.stanford.smi.protegex.owlx.examples.javaDemo.model.Purchase
hasDirectlyOverriddenTemplateFacet(Slot, Facet) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeCls
  Deprecated. no OWL equivalent
hasDirectlyOverriddenTemplateFacet(Cls, Slot, Facet) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not supported in OWL
hasDirectlyOverriddenTemplateSlot(Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeCls
  Deprecated. no OWL equivalent
hasDirectlyOverriddenTemplateSlot(Cls, Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not supported in OWL
hasDirectRestriction(Cls, Slot, Cls) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
hasDirectSuperclass(Cls, Cls) - Static method in class edu.stanford.smi.protegex.owl.jena.parser.FrameCreatorUtility
hasDirectSuperclass(Cls) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeCls
  Deprecated.
hasDirectSuperclass(Cls, Cls) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not needed
hasDirectSuperslot(Slot, Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not needed
hasDirectSuperslot(Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeSlot
  Deprecated.
hasDirectTemplateSlot(Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeCls
  Deprecated. not needed
hasDirectTemplateSlot(Cls, Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
hasDirectType(Instance, Cls) - Static method in class edu.stanford.smi.protegex.owl.jena.parser.FrameCreatorUtility
hasDirectType(Cls) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeInstance
  Deprecated.
hasDirectType(Instance, Cls) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
hasEquivalentClass(RDFSClass) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
hasEquivalentClass(RDFSClass) - Method in interface edu.stanford.smi.protegex.owl.model.RDFSClass
  Checks whether this is a (direct) equivalent class of a given other Cls.
hasFeatures - Static variable in class edu.stanford.smi.protegex.owl.ui.profiles.OWLProfiles
hasFirstName() - Method in interface edu.stanford.smi.protegex.owlx.examples.javaDemo.model.Customer_
hasFirstName() - Method in class edu.stanford.smi.protegex.owlx.examples.javaDemo.model.impl.DefaultCustomer_
hasFrameDeclaredSuperclass(Cls) - Method in class edu.stanford.smi.protegex.owl.jena.parser.SuperClsCache
hasHasValueRestriction() - Method in class edu.stanford.smi.protegex.owl.ui.components.AbstractPropertyValuesComponent
hashCode() - Method in class edu.stanford.smi.protegex.owl.jena.parser.UndefTriple
hashCode() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFSLiteral
hashCode() - Method in class edu.stanford.smi.protegex.owl.model.triplestore.impl.DefaultTriple
hashCode() - Method in class edu.stanford.smi.protegex.owl.model.triplestore.impl.DefaultTuple
hashCode() - Method in class edu.stanford.smi.protegex.owl.model.triplestore.impl.TripleStoreImpl
hashCode() - Method in class edu.stanford.smi.protegex.owl.repository.impl.DublinCoreDLVersionRedirectRepository
hasImp(String) - Method in class edu.stanford.smi.protegex.owl.swrl.model.SWRLFactory
hasInconsistentClasses(OWLModel) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
hasInheritedTemplateSlot(Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeCls
  Deprecated. not needed
hasInheritedTemplateSlot(Cls, Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
hasLastName() - Method in interface edu.stanford.smi.protegex.owlx.examples.javaDemo.model.Customer_
hasLastName() - Method in class edu.stanford.smi.protegex.owlx.examples.javaDemo.model.impl.DefaultCustomer_
hasMultipleSuperclasses(RDFSNamedClass) - Method in class edu.stanford.smi.protegex.owl.javacode.JavaCodeGenerator
hasNamedSuperclass() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLNamedClass
hasNamedSuperClass() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLNamedClass
hasNamedSuperclass() - Method in interface edu.stanford.smi.protegex.owl.model.OWLNamedClass
  Checks whether this has at least one named direct superclass.
hasNext() - Method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DefaultDIGQueryResponseIterator
hasNext() - Method in interface edu.stanford.smi.protegex.owl.model.query.QueryResults
  Checks if there are more results available.
hasNext() - Method in class edu.stanford.smi.protegex.owl.model.query.SPARQLQueryResults
hasObjectRange() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLObjectProperty
hasObjectRange() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
hasObjectRange() - Method in interface edu.stanford.smi.protegex.owl.model.RDFProperty
  Checks whether this can take only object/reference values.
hasOnlyEditableValues() - Method in class edu.stanford.smi.protegex.owl.ui.components.AbstractPropertyValuesComponent
hasOperandWithBrowserText(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLNAryLogicalClass
hasOperandWithBrowserText(String) - Method in interface edu.stanford.smi.protegex.owl.model.OWLNAryLogicalClass
hasOutputStream(URI) - Method in class edu.stanford.smi.protegex.owl.repository.impl.AbstractStreamBasedRepositoryImpl
hasOutputStream(URI) - Method in class edu.stanford.smi.protegex.owl.repository.impl.DatabaseRepository
hasOutputStream(URI) - Method in interface edu.stanford.smi.protegex.owl.repository.Repository
  Determines if the ontology is writable through an output stream.
hasOverriddenTemplateFacet(Slot, Facet) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeCls
  Deprecated. no OWL equivalent
hasOverriddenTemplateFacet(Cls, Slot, Facet) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not supported in OWL
hasOverriddenTemplateSlot(Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeCls
  Deprecated. no OWL equivalent
hasOverriddenTemplateSlot(Cls, Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not supported in OWL
hasOWLDLProfile(OWLModel) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
hasOWLFullProfile(OWLModel) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
hasOWLModel() - Method in class edu.stanford.smi.protegex.owl.swrl.P3SWRLTabPluginRegistrationRecord
hasOwnSlot(Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeInstance
  Deprecated. not needed
hasOwnSlot(Frame, Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not needed (get domain of rdf:type instead)
hasOwnSlotValue(Frame, Slot, Object) - Static method in class edu.stanford.smi.protegex.owl.jena.parser.FrameCreatorUtility
hasPrice() - Method in class edu.stanford.smi.protegex.owlx.examples.javaDemo.model.impl.DefaultProduct
hasPrice() - Method in interface edu.stanford.smi.protegex.owlx.examples.javaDemo.model.Product
hasProduct() - Method in class edu.stanford.smi.protegex.owlx.examples.javaDemo.model.impl.DefaultPurchase
hasProduct() - Method in interface edu.stanford.smi.protegex.owlx.examples.javaDemo.model.Purchase
hasPropertyValue(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
hasPropertyValue(RDFProperty, boolean) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
hasPropertyValue(RDFProperty, Object) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
hasPropertyValue(RDFProperty, Object, boolean) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
hasPropertyValue(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFIndividual
hasPropertyValue(RDFProperty, boolean) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFIndividual
hasPropertyValue(RDFProperty, Object) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFIndividual
hasPropertyValue(RDFProperty, Object, boolean) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFIndividual
hasPropertyValue(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
hasPropertyValue(RDFProperty, boolean) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
hasPropertyValue(RDFProperty, Object) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
hasPropertyValue(RDFProperty, Object, boolean) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
hasPropertyValue(RDFResource, RDFProperty, Object, boolean) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
hasPropertyValue(RDFResource, RDFProperty) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
hasPropertyValue(RDFResource, RDFProperty, boolean) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
hasPropertyValue(RDFProperty) - Method in interface edu.stanford.smi.protegex.owl.model.RDFResource
  Checks whether this has any (direct) property value.
hasPropertyValue(RDFProperty, boolean) - Method in interface edu.stanford.smi.protegex.owl.model.RDFResource
  Checks whether this has any property value.
hasPropertyValue(RDFProperty, Object) - Method in interface edu.stanford.smi.protegex.owl.model.RDFResource
  Checks whether this has a certain (direct) property value.
hasPropertyValue(RDFProperty, Object, boolean) - Method in interface edu.stanford.smi.protegex.owl.model.RDFResource
  Checks whether this has a certain property value.
hasPropertyValueWithBrowserText(RDFProperty, String) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
hasPropertyValueWithBrowserText(Slot, String) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
hasPropertyValueWithBrowserText(RDFProperty, String) - Method in interface edu.stanford.smi.protegex.owl.model.RDFSClass
  For an object-valued property, checks whether one of the property values has a given browser text.
hasProtegeType(RDFSClass) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
hasProtegeType(RDFSClass, boolean) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
hasProtegeType(RDFSClass) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFIndividual
hasProtegeType(RDFSClass, boolean) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFIndividual
hasProtegeType(RDFSClass) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
hasProtegeType(RDFSClass, boolean) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
hasProtegeType(RDFResource, RDFSClass) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
hasProtegeType(RDFResource, RDFSClass, boolean) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
hasProtegeType(RDFSClass) - Method in interface edu.stanford.smi.protegex.owl.model.RDFResource
  Checks whether this resource has a given type.
hasProtegeType(RDFSClass, boolean) - Method in interface edu.stanford.smi.protegex.owl.model.RDFResource
hasPurchases() - Method in interface edu.stanford.smi.protegex.owlx.examples.javaDemo.model.Customer_
hasPurchases() - Method in class edu.stanford.smi.protegex.owlx.examples.javaDemo.model.impl.DefaultCustomer_
hasRange(boolean) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
hasRange(boolean) - Method in interface edu.stanford.smi.protegex.owl.model.RDFProperty
  Checks whether this has any concrete range definition.
hasRDFProfile(OWLModel) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
hasRDFSLabel(RDFResource, String, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
hasRDFSLabelIgnoringLanguage(RDFResource, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
hasRDFType(Frame, Slot, Cls, TripleStore) - Static method in class edu.stanford.smi.protegex.owl.jena.parser.FrameCreatorUtility
hasRDFType(RDFSClass) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
hasRDFType(RDFSClass, boolean) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
hasRDFType(RDFSClass) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFIndividual
hasRDFType(RDFSClass, boolean) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFIndividual
hasRDFType(RDFSClass) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
hasRDFType(RDFSClass, boolean) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
hasRDFType(RDFResource, RDFSClass) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
hasRDFType(RDFResource, RDFSClass, boolean) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
hasRDFType(RDFSClass) - Method in interface edu.stanford.smi.protegex.owl.model.RDFResource
  Checks whether this resource has a given rdf:type.
hasRDFType(RDFSClass, boolean) - Method in interface edu.stanford.smi.protegex.owl.model.RDFResource
hasRestrictionOfType(Cls) - Method in class edu.stanford.smi.protegex.owl.ui.clsproperties.PropertyTreeNode
hasSameOperands(OWLNAryLogicalClass) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLNAryLogicalClass
hasSameOperands(OWLNAryLogicalClass) - Method in interface edu.stanford.smi.protegex.owl.model.OWLNAryLogicalClass
hasSelectedRule() - Static method in class edu.stanford.smi.protegex.owl.swrl.P3SWRLTabPluginManager
hasSlotValueAtSomeFrame(Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not needed
hasSuperclass(Cls) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeCls
  Deprecated. not needed
hasSuperclass(Cls, Cls) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
hasSuperslot(Slot, Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not needed
hasSuperslot(Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeSlot
  Deprecated.
hasTemplateFacet(Slot, Facet) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeCls
  Deprecated. no OWL equivalent
hasTemplateSlot(Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeCls
  Deprecated. not needed
hasTemplateSlot(Cls, Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
hasType(Cls) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeInstance
  Deprecated. not needed
hasType(Instance, Cls) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
hasTypeColumn() - Method in class edu.stanford.smi.protegex.owl.ui.components.annotations.AnnotationsTableModel
hasTypeColumn() - Method in class edu.stanford.smi.protegex.owl.ui.components.triples.TriplesTableModel
hasUnsuppressedTypes(Instance) - Method in class edu.stanford.smi.protegex.owl.ui.resourcedisplay.ResourceDisplay
HasValue_Restrictions - Static variable in class edu.stanford.smi.protegex.owl.ui.profiles.OWLProfiles
hasValueAtSomeFrame() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeSlot
  Deprecated. not needed
HasValueRestrictionUpdater - Class in edu.stanford.smi.protegex.owl.model.framestore.updater
HasValueRestrictionUpdater(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.model.framestore.updater.HasValueRestrictionUpdater
hasXSDStringRange(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
hasZipCode() - Method in interface edu.stanford.smi.protegex.owlx.examples.javaDemo.model.Customer_
hasZipCode() - Method in class edu.stanford.smi.protegex.owlx.examples.javaDemo.model.impl.DefaultCustomer_
HEAD - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.Slot
headerIcon - Static variable in class edu.stanford.smi.protegex.owl.ui.metrics.MetricsPanel
HeaderWidget - Static variable in class edu.stanford.smi.protegex.owl.ui.forms.ProtegeFormsNames
HeaderWidget - Class in edu.stanford.smi.protegex.owl.ui.widget
  The SlotWidget showing up as default on the top of all forms.
HeaderWidget() - Constructor for class edu.stanford.smi.protegex.owl.ui.widget.HeaderWidget
HeaderWidgetMetadata - Class in edu.stanford.smi.protegex.owl.ui.widget
HeaderWidgetMetadata() - Constructor for class edu.stanford.smi.protegex.owl.ui.widget.HeaderWidgetMetadata
height - Static variable in class edu.stanford.smi.protegex.owl.ui.forms.AbsoluteLayoutNames
HELP_GROUP - Static variable in interface edu.stanford.smi.protegex.owl.ui.actions.OWLModelActionConstants
HELP_LOGO - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
HiddenClassesFilter - Class in edu.stanford.smi.protegex.owl.ui.explorer.filter
HiddenClassesFilter() - Constructor for class edu.stanford.smi.protegex.owl.ui.explorer.filter.HiddenClassesFilter
HiddenClassesPanel - Class in edu.stanford.smi.protegex.owl.ui.subsumption
HiddenClassesPanel(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.ui.subsumption.HiddenClassesPanel
HiddenClassFind - Class in edu.stanford.smi.protegex.owl.ui.search.finder
HiddenClassFind(OWLModel, int) - Constructor for class edu.stanford.smi.protegex.owl.ui.search.finder.HiddenClassFind
HiddenClassTreeNode - Class in edu.stanford.smi.protegex.owl.ui.cls
HiddenClassTreeNode(HiddenClassTreeRoot, Cls) - Constructor for class edu.stanford.smi.protegex.owl.ui.cls.HiddenClassTreeNode
HiddenClassTreeRoot - Class in edu.stanford.smi.protegex.owl.ui.cls
HiddenClassTreeRoot(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.ui.cls.HiddenClassTreeRoot
HiddenClassTreeRoot(Collection) - Constructor for class edu.stanford.smi.protegex.owl.ui.cls.HiddenClassTreeRoot
HideClassAction - Class in edu.stanford.smi.protegex.owl.ui.cls
  A ResourceAction to set the selected class to invisible.
HideClassAction() - Constructor for class edu.stanford.smi.protegex.owl.ui.cls.HideClassAction
hidePlugin(String) - Static method in class edu.stanford.smi.protegex.owl.swrl.P3SWRLTabPluginManager
hidePopup() - Method in class edu.stanford.smi.protegex.owl.ui.conditions.PropertySuggestionPopup
hidePropertyWindow() - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTable
hideSymbolPanel() - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.ClassDescriptionTable
hideSymbolPanel() - Method in class edu.stanford.smi.protegex.owl.ui.clsproperties.PropertyRestrictionsTree
hideSymbolPanel() - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTable
hideSymbolPanel() - Method in class edu.stanford.smi.protegex.owl.ui.owltable.SymbolTable
hideVisiblePlugin() - Static method in class edu.stanford.smi.protegex.owl.swrl.P3SWRLTabPluginManager
hierarchiesChanged(int) - Method in interface edu.stanford.smi.protegex.owl.ui.cls.HierarchiesHost
hierarchiesChanged(int) - Method in class edu.stanford.smi.protegex.owl.ui.cls.OWLClassesTab
HierarchiesHost - Interface in edu.stanford.smi.protegex.owl.ui.cls
  A component hosting a HierarchyManager.
HierarchiesPanel - Class in edu.stanford.smi.protegex.owl.ui.cls
HierarchiesPanel(HierarchiesHost) - Constructor for class edu.stanford.smi.protegex.owl.ui.cls.HierarchiesPanel
hierarchiesPanel - Variable in class edu.stanford.smi.protegex.owl.ui.cls.OWLClassesTab
Hierarchy - Interface in edu.stanford.smi.protegex.owl.ui.cls
hierarchy - Variable in class edu.stanford.smi.protegex.owl.ui.cls.HierarchyPanel
HierarchyManager - Interface in edu.stanford.smi.protegex.owl.ui.cls
hierarchyManager - Variable in class edu.stanford.smi.protegex.owl.ui.cls.HierarchyPanel
HierarchyPanel - Class in edu.stanford.smi.protegex.owl.ui.cls
  A JPanel holding a Hierarchy.
HierarchyPanel(Hierarchy, HierarchyManager, boolean, OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.ui.cls.HierarchyPanel
HomeOntologyToolTipGenerator - Class in edu.stanford.smi.protegex.owl.ui.tooltips
HomeOntologyToolTipGenerator() - Constructor for class edu.stanford.smi.protegex.owl.ui.tooltips.HomeOntologyToolTipGenerator
host - Variable in class edu.stanford.smi.protegex.owl.ui.search.FindUsageTableItem
hostClass - Variable in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTableModel
  The edited class
HostResourceDisplay - Interface in edu.stanford.smi.protegex.owl.ui.results
  An interface that is typically implemented by TabWidgets, allowing them to interact with global actions such as searching.
HTMLEditorPanel - Class in edu.stanford.smi.protegex.owl.ui.widget
HTMLEditorPanel(OWLModel, RDFSLiteral) - Constructor for class edu.stanford.smi.protegex.owl.ui.widget.HTMLEditorPanel
HTMLEditorPanel(String) - Constructor for class edu.stanford.smi.protegex.owl.ui.widget.HTMLEditorPanel
HTMLEditorPanel(OWLModel, String, String) - Constructor for class edu.stanford.smi.protegex.owl.ui.widget.HTMLEditorPanel
HTTPRepository - Class in edu.stanford.smi.protegex.owl.repository.impl
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Sep 18, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
HTTPRepository(URL) - Constructor for class edu.stanford.smi.protegex.owl.repository.impl.HTTPRepository
HTTPRepositoryCreatorWizardPanel - Class in edu.stanford.smi.protegex.owl.ui.repository.wizard.impl
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Oct 3, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
HTTPRepositoryCreatorWizardPanel(WizardPage) - Constructor for class edu.stanford.smi.protegex.owl.ui.repository.wizard.impl.HTTPRepositoryCreatorWizardPanel
HTTPRepositoryCreatorWizardPlugin - Class in edu.stanford.smi.protegex.owl.ui.repository.wizard.impl
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Oct 3, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
HTTPRepositoryCreatorWizardPlugin() - Constructor for class edu.stanford.smi.protegex.owl.ui.repository.wizard.impl.HTTPRepositoryCreatorWizardPlugin
HTTPRepositoryFactoryPlugin - Class in edu.stanford.smi.protegex.owl.repository.impl
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Sep 19, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
HTTPRepositoryFactoryPlugin() - Constructor for class edu.stanford.smi.protegex.owl.repository.impl.HTTPRepositoryFactoryPlugin

## I

I - Static variable in class edu.stanford.smi.protegex.owl.model.util.DLExpressivityChecker
ICON - Static variable in interface edu.stanford.smi.protegex.owl.ui.actions.OWLModelAction
ICON - Static variable in class edu.stanford.smi.protegex.owl.ui.classform.form.AddPropertyFormComponentAction
ICON_NAME - Static variable in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLAllValuesFrom
ICON_NAME - Static variable in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLDatatypeProperty
IconFactory - Interface in edu.stanford.smi.protegex.owl.ui.icons
  An interface for objects that can create an Icon for a given RDFResource.
IconOwner - Interface in edu.stanford.smi.protegex.owl.ui.actions
  A common base interface for things that can be represented by an icon.
ID - Static variable in interface edu.stanford.smi.protegex.owl.model.RDFNames.Slot
IDClass() - Method in class edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParser
IDENTIFIER - Static variable in interface edu.stanford.smi.protegex.owl.model.classparser.compact.CompactParserConstants
IDENTIFIER - Static variable in interface edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxParserConstants
Identifier() - Method in class edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParser
IDENTIFIER - Static variable in interface edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParserConstants
IGNORE_PREFIXES_IN_SEARCH - Static variable in class edu.stanford.smi.protegex.owl.model.framestore.OWLFrameStore
ILLEGAL_SYSTEM_CLASSES - Static variable in class edu.stanford.smi.protegex.owl.testing.owldl.NoSubclassesOfRDFClassesOWLDLTest
ILLEGAL_URIS - Static variable in class edu.stanford.smi.protegex.owl.testing.owldl.NoImportOfSystemOntologiesOWLDLTest
image - Variable in class edu.stanford.smi.protegex.owl.model.classparser.compact.Token
  The string image of the token.
image - Variable in class edu.stanford.smi.protegex.owl.model.classparser.dl.Token
  The string image of the token.
image - Variable in class edu.stanford.smi.protegex.owl.model.classparser.manchester.Token
  The string image of the token.
IMP - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.Cls
IMP - Static variable in class edu.stanford.smi.protegex.owl.swrl.ui.icons.SWRLIcons
IMP_CHAR - Static variable in class edu.stanford.smi.protegex.owl.swrl.parser.SWRLParser
ImplicitImports - Class in edu.stanford.smi.protegex.owl.jena.parser
  A Singleton that manages the list of namespaces (such as DC) that shall be imported internally if resources from it are referenced as untyped in a file.
ImplicitImports() - Constructor for class edu.stanford.smi.protegex.owl.jena.parser.ImplicitImports
IMPLIES_C - Static variable in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGVocabulary.Tell
IMPLIES_R - Static variable in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGVocabulary.Tell
IMPORT - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
importData(JComponent, Transferable) - Method in class edu.stanford.smi.protegex.owl.ui.owltable.OWLTableTransferHandler
ImportEntry - Interface in edu.stanford.smi.protegex.owl.ui.metadatatab.imports.wizard
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Dec 7, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
ImportHelper - Class in edu.stanford.smi.protegex.owl.model.util
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Jan 18, 2006

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
ImportHelper(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.model.util.ImportHelper
  Creates an import helper that will import ontologies into the specified `OWLModel`.
ImportingOwlNamespaceManager - Class in edu.stanford.smi.protegex.owl.model.impl
ImportingOwlNamespaceManager(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.model.impl.ImportingOwlNamespaceManager
importOntologies() - Method in class edu.stanford.smi.protegex.owl.model.util.ImportHelper
  Imports the ontologies that this helper was asked to import.
importOntologies(boolean) - Method in class edu.stanford.smi.protegex.owl.model.util.ImportHelper
  Alternative method that allows the caller to block the GUI reload (for example when initialising TabPlugins)
importOWLClses(JComponent, String) - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTableTransferHandler
importOWLClses(JComponent, String) - Method in class edu.stanford.smi.protegex.owl.ui.owltable.DefaultOWLTableTransferHandler
importOWLClses(JComponent, String) - Method in class edu.stanford.smi.protegex.owl.ui.owltable.OWLTableTransferHandler
importOWLFile(JenaOWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
IMPORTS - Static variable in interface edu.stanford.smi.protegex.owl.model.OWLNames.Slot
ImportsPanel - Class in edu.stanford.smi.protegex.owl.ui.metadatatab.imports
ImportsPanel(OWLOntology) - Constructor for class edu.stanford.smi.protegex.owl.ui.metadatatab.imports.ImportsPanel
ImportsTableModel - Class in edu.stanford.smi.protegex.owl.ui.metadatatab.imports
ImportsTableModel(OWLOntology) - Constructor for class edu.stanford.smi.protegex.owl.ui.metadatatab.imports.ImportsTableModel
ImportsTree - Class in edu.stanford.smi.protegex.owl.ui.importstree
ImportsTree(OWLOntology) - Constructor for class edu.stanford.smi.protegex.owl.ui.importstree.ImportsTree
ImportsTreeAction - Class in edu.stanford.smi.protegex.owl.ui.importstree
ImportsTreeAction() - Constructor for class edu.stanford.smi.protegex.owl.ui.importstree.ImportsTreeAction
ImportsTreeNode - Class in edu.stanford.smi.protegex.owl.ui.importstree
ImportsTreeNode(LazyTreeNode, RDFResource) - Constructor for class edu.stanford.smi.protegex.owl.ui.importstree.ImportsTreeNode
ImportsTreePanel - Class in edu.stanford.smi.protegex.owl.ui.importstree
ImportsTreePanel(OWLOntology) - Constructor for class edu.stanford.smi.protegex.owl.ui.importstree.ImportsTreePanel
ImportsTreeRoot - Class in edu.stanford.smi.protegex.owl.ui.importstree
ImportsTreeRoot(OWLOntology) - Constructor for class edu.stanford.smi.protegex.owl.ui.importstree.ImportsTreeRoot
ImportTypePage - Class in edu.stanford.smi.protegex.owl.ui.metadatatab.imports.wizard
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Oct 1, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
ImportTypePage(OWLWizard) - Constructor for class edu.stanford.smi.protegex.owl.ui.metadatatab.imports.wizard.ImportTypePage
ImportUtil - Class in edu.stanford.smi.protegex.owl.model.util
ImportUtil() - Constructor for class edu.stanford.smi.protegex.owl.model.util.ImportUtil
ImportVerificationPage - Class in edu.stanford.smi.protegex.owl.ui.metadatatab.imports.wizard
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Dec 7, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
ImportVerificationPage(ImportWizard) - Constructor for class edu.stanford.smi.protegex.owl.ui.metadatatab.imports.wizard.ImportVerificationPage
ImportWizard - Class in edu.stanford.smi.protegex.owl.ui.metadatatab.imports.wizard
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Sep 28, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
ImportWizard(JComponent, OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.ui.metadatatab.imports.wizard.ImportWizard
ImportWizardData - Class in edu.stanford.smi.protegex.owl.ui.metadatatab.imports.wizard
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Dec 7, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
ImportWizardData() - Constructor for class edu.stanford.smi.protegex.owl.ui.metadatatab.imports.wizard.ImportWizardData
IN_FORMAL_COMMENT - Static variable in interface edu.stanford.smi.protegex.owl.model.classparser.compact.CompactParserConstants
IN_FORMAL_COMMENT - Static variable in interface edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxParserConstants
IN_MULTI_LINE_COMMENT - Static variable in interface edu.stanford.smi.protegex.owl.model.classparser.compact.CompactParserConstants
IN_MULTI_LINE_COMMENT - Static variable in interface edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxParserConstants
IN_SINGLE_LINE_COMMENT - Static variable in interface edu.stanford.smi.protegex.owl.model.classparser.compact.CompactParserConstants
IN_SINGLE_LINE_COMMENT - Static variable in interface edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxParserConstants
inBuf - Variable in class edu.stanford.smi.protegex.owl.model.classparser.compact.JavaCharStream
inBuf - Variable in class edu.stanford.smi.protegex.owl.model.classparser.dl.JavaCharStream
inBuf - Variable in class edu.stanford.smi.protegex.owl.model.classparser.manchester.JavaCharStream
includeKnowledgeBase(KnowledgeBase, PropertyList, Collection) - Method in class edu.stanford.smi.protegex.owl.jena.JenaKnowledgeBaseFactory
INCOMPATIBLE_WITH - Static variable in interface edu.stanford.smi.protegex.owl.model.OWLNames.Slot
indexOf(SWRLImp) - Method in class edu.stanford.smi.protegex.owl.swrl.ui.table.SWRLTableModel
individiualAction - Variable in class edu.stanford.smi.protegex.owl.ui.code.SymbolPanel
INDIVIDUAL - Static variable in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGVocabulary.Language
Individual() - Method in class edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxParser
INDIVIDUAL_ID - Static variable in interface edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxParserConstants
INDIVIDUAL_PAIR - Static variable in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGVocabulary.Response
INDIVIDUAL_PAIR_SET - Static variable in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGVocabulary.Response
INDIVIDUAL_PROPERTY_ATOM - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.Cls
INDIVIDUAL_SET - Static variable in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGVocabulary.Response
individualCreated(RDFResource, KnowledgeBaseEvent) - Method in class edu.stanford.smi.protegex.owl.model.event.ModelAdapter
individualCreated(RDFResource) - Method in class edu.stanford.smi.protegex.owl.model.event.ModelAdapter
individualCreated(RDFResource) - Method in interface edu.stanford.smi.protegex.owl.model.event.ModelListener
  Called after an individual has been created.
individualDeleted(RDFResource, KnowledgeBaseEvent) - Method in class edu.stanford.smi.protegex.owl.model.event.ModelAdapter
individualDeleted(RDFResource) - Method in class edu.stanford.smi.protegex.owl.model.event.ModelAdapter
individualDeleted(RDFResource) - Method in interface edu.stanford.smi.protegex.owl.model.event.ModelListener
  Called after an individual has been deleted.
IndividualsTabClassesPanel - Class in edu.stanford.smi.protegex.owl.ui.individuals
  The class tree display on the individuals tab.
IndividualsTabClassesPanel(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.ui.individuals.IndividualsTabClassesPanel
INFERENCE_GROUP - Static variable in interface edu.stanford.smi.protegex.owl.ui.actions.OWLModelActionConstants
InferenceIcons - Class in edu.stanford.smi.protegex.owl.inference.ui.icons
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Aug 22, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
InferenceIcons() - Constructor for class edu.stanford.smi.protegex.owl.inference.ui.icons.InferenceIcons
INFERRED_SUBCLASSES - Static variable in interface edu.stanford.smi.protegex.owl.model.ProtegeNames.Slot
INFERRED_SUPERCLASSES - Static variable in interface edu.stanford.smi.protegex.owl.model.ProtegeNames.Slot
INFERRED_TYPE - Static variable in interface edu.stanford.smi.protegex.owl.model.ProtegeNames.Slot
InferredConditionsWidget - Class in edu.stanford.smi.protegex.owl.ui.conditions
  A SlotWidget used for describing logical class characteristics, i.e.
InferredConditionsWidget() - Constructor for class edu.stanford.smi.protegex.owl.ui.conditions.InferredConditionsWidget
InferredInstancesListPanel - Class in edu.stanford.smi.protegex.owl.ui.individuals
  A JPanel to display the inferred instances of a collection of classes.
InferredInstancesListPanel() - Constructor for class edu.stanford.smi.protegex.owl.ui.individuals.InferredInstancesListPanel
InferredModeWidget - Interface in edu.stanford.smi.protegex.owl.ui.widget
  An interface for UI components that can be toggled between asserted and inferred modes.
InferredSubsumptionTreePanel - Class in edu.stanford.smi.protegex.owl.ui.subsumption
  A SubsumptionTreePanel optimized for the inferred tree.
InferredSubsumptionTreePanel(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.ui.subsumption.InferredSubsumptionTreePanel
InferredSuperClassesWidget - Class in edu.stanford.smi.protegex.owl.ui.widget
InferredSuperClassesWidget() - Constructor for class edu.stanford.smi.protegex.owl.ui.widget.InferredSuperClassesWidget
INFINITE_TIME - Static variable in class edu.stanford.smi.protegex.owl.ui.owltable.SymbolTable
INFINITE_TIME - Static variable in class edu.stanford.smi.protegex.owl.ui.properties.domain.OWLDomainTable
InformationMessageLogRecord - Class in edu.stanford.smi.protegex.owl.inference.protegeowl.log
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Sep 13, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
InformationMessageLogRecord(RDFResource, String, ReasonerLogRecord) - Constructor for class edu.stanford.smi.protegex.owl.inference.protegeowl.log.InformationMessageLogRecord
INHERITED - Static variable in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTableItem
init(String) - Method in class edu.stanford.smi.protegex.owl.jena.triplestore.JenaMemoryTripleWriter
init(OWLModel) - Method in class edu.stanford.smi.protegex.owl.model.impl.UnmodifiableNamespaceManager
init(String) - Method in class edu.stanford.smi.protegex.owl.model.triplestore.DelegatingTripleWriter
init(String) - Method in interface edu.stanford.smi.protegex.owl.model.triplestore.TripleWriter
  Initializes this writer to work with a given base URI.
init(OWLModel) - Method in class edu.stanford.smi.protegex.owl.ui.classform.component.FormComponent
init(JButton) - Method in class edu.stanford.smi.protegex.owl.ui.classform.component.property.ChangeClosureAxiomButton
init(OWLModel) - Method in class edu.stanford.smi.protegex.owl.ui.classform.component.property.PropertyFormComponent
init(boolean, boolean) - Method in class edu.stanford.smi.protegex.owl.ui.clsproperties.PropertyRestrictionsTree
initAllPanel(JPanel, List) - Method in class edu.stanford.smi.protegex.owl.ui.cls.ClassAnnotationsAndDescriptionWidget
initAllPanel(JPanel, List) - Method in class edu.stanford.smi.protegex.owl.ui.cls.LogicClassDefinitionWidget
initAllPanel(JPanel, List) - Method in class edu.stanford.smi.protegex.owl.ui.cls.PropertiesClassDefinitionWidget
initAllPanel(JPanel, List) - Method in class edu.stanford.smi.protegex.owl.ui.cls.SwitchableClassDefinitionWidget
initAllPanel(JPanel, List) - Method in class edu.stanford.smi.protegex.owl.ui.metadata.NameDocumentationWidget
  Deprecated.
initAllPanel(JPanel, List) - Method in class edu.stanford.smi.protegex.owl.ui.widget.MultiWidgetPropertyWidget
  Overload this to set layout, add static components, and otherwise modify the appearance of the panel if this is in "all" mode.
initColumns() - Method in class edu.stanford.smi.protegex.owl.ui.matrix.MatrixTable
initDefaultNamespaces() - Method in class edu.stanford.smi.protegex.owl.database.OWLDatabaseModel
initGCIPredicates() - Method in class edu.stanford.smi.protegex.owl.jena.parser.GlobalParserCache
INITIAL_CHARACTERS_REQUIRING_QUOTES - Static variable in class edu.stanford.smi.protegex.owl.model.classparser.ParserUtils
initialize() - Method in class edu.stanford.smi.protegex.owl.inference.reasoner.AbstractProtegeReasoner
initialize() - Method in interface edu.stanford.smi.protegex.owl.inference.reasoner.ProtegeReasoner
  This is an optional method that can be called by applications and that gives the reasoner a chance to do some pre-computations.
initialize() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
initialize() - Method in class edu.stanford.smi.protegex.owl.swrl.ui.tab.SWRLTab
initialize() - Method in class edu.stanford.smi.protegex.owl.swrl.ui.widget.SWRLRuleSlotWidget
initialize(Component, RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.actions.ResourceAction
initialize() - Method in class edu.stanford.smi.protegex.owl.ui.cls.AbstractClassDefinitionWidget
initialize() - Method in class edu.stanford.smi.protegex.owl.ui.cls.ClassAnnotationsAndDescriptionWidget
initialize() - Method in class edu.stanford.smi.protegex.owl.ui.cls.ClassTypeConverterWidget
initialize() - Method in class edu.stanford.smi.protegex.owl.ui.cls.OWLClassesTab
initialize() - Method in class edu.stanford.smi.protegex.owl.ui.cls.PropertiesClassDefinitionWidget
initialize() - Method in class edu.stanford.smi.protegex.owl.ui.cls.SwitchableClassDefinitionWidget
initialize() - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.ClassDescriptionWidget
initialize() - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.DisjointClassesWidget
initialize() - Method in class edu.stanford.smi.protegex.owl.ui.clsproperties.PropertyRestrictionsTreeWidget
initialize(String, Slot) - Method in class edu.stanford.smi.protegex.owl.ui.conditions.AbstractConditionsWidget
initialize() - Method in class edu.stanford.smi.protegex.owl.ui.conditions.AssertedConditionsWidget
initialize() - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsWidget
initialize() - Method in class edu.stanford.smi.protegex.owl.ui.conditions.InferredConditionsWidget
initialize() - Method in class edu.stanford.smi.protegex.owl.ui.individuals.OWLIndividualsTab
initialize() - Method in class edu.stanford.smi.protegex.owl.ui.metadata.AnnotationTextAreaWidget
initialize() - Method in class edu.stanford.smi.protegex.owl.ui.metadata.NameDocumentationWidget
  Deprecated.
initialize() - Method in class edu.stanford.smi.protegex.owl.ui.metadata.RDFResourceNameWidget
  Deprecated.
initialize() - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.alldifferent.AllDifferentWidget
initialize() - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.OntologyURIWidget
initialize() - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.OWLMetadataTab
initialize() - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.OWLNamespacesWidget
initialize() - Method in class edu.stanford.smi.protegex.owl.ui.properties.domain.OWLDomainWidget
initialize() - Method in class edu.stanford.smi.protegex.owl.ui.properties.OWLInversePropertyWidget
initialize() - Method in class edu.stanford.smi.protegex.owl.ui.properties.OWLPropertiesTab
initialize() - Method in class edu.stanford.smi.protegex.owl.ui.properties.range.OWLRangeWidget
initialize(RDFSNamedClass[]) - Method in class edu.stanford.smi.protegex.owl.ui.properties.types.AbstractPropertyTypesWidget
initialize() - Method in class edu.stanford.smi.protegex.owl.ui.properties.types.OWLDatatypePropertyTypesWidget
initialize() - Method in class edu.stanford.smi.protegex.owl.ui.properties.types.OWLObjectPropertyTypesWidget
initialize() - Method in class edu.stanford.smi.protegex.owl.ui.properties.types.RDFPropertyTypesWidget
initialize() - Method in class edu.stanford.smi.protegex.owl.ui.widget.AbstractPropertyValuesWidget
initialize() - Method in class edu.stanford.smi.protegex.owl.ui.widget.ClassFormWidget
initialize() - Method in class edu.stanford.smi.protegex.owl.ui.widget.HeaderWidget
initialize() - Method in class edu.stanford.smi.protegex.owl.ui.widget.InferredSuperClassesWidget
initialize() - Method in class edu.stanford.smi.protegex.owl.ui.widget.MultiWidgetPropertyWidget
  Overloaded to forward the nested calls into all nested components.
initialize() - Method in class edu.stanford.smi.protegex.owl.ui.widget.OWLDateWidget
initialize() - Method in class edu.stanford.smi.protegex.owl.ui.widget.OWLFormsTab
initialize() - Method in class edu.stanford.smi.protegex.owl.ui.widget.OWLTimeWidget
initialize() - Method in class edu.stanford.smi.protegex.owl.ui.widget.RDFPropertiesWidget
initialize() - Method in class edu.stanford.smi.protegex.owlx.examples.TutorialTabWidget
  The quasi constructor of the tab widget, which creates the sub components and adds them to the panel.
initializeButtons(LabeledComponent) - Method in class edu.stanford.smi.protegex.owl.ui.conditions.AbstractConditionsWidget
initializeButtons(LabeledComponent) - Method in class edu.stanford.smi.protegex.owl.ui.conditions.AssertedConditionsWidget
initializeDefaultAnnotationView() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
  Deprecated. - Not called anymore
initializeExpandShortNamesInMethods() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
initializeKB(KnowledgeBase, String, String, String, String, String, boolean) - Method in class edu.stanford.smi.protegex.owl.database.OWLDatabaseKnowledgeBaseFactory
initializeLoadDefaults() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
initializeSources(PropertyList) - Method in class edu.stanford.smi.protegex.owl.database.creator.AbstractOwlDatabaseCreator
initializeSources(PropertyList) - Method in class edu.stanford.smi.protegex.owl.jena.creator.OwlProjectFromUriCreator
initializeSources(PropertyList) - Method in class edu.stanford.smi.protegex.owl.storage.ProtegeFromOWLFilesCreateProjectPlugin
initializeTable(Collection) - Method in class edu.stanford.smi.protegex.owl.database.creator.AbstractOwlDatabaseCreator
initializeTreeRenderer() - Method in class edu.stanford.smi.protegex.owl.ui.cls.OWLSubclassPane
initInstanceDisplay(RDFResource, JPanel) - Static method in class edu.stanford.smi.protegex.owl.ui.resourcedisplay.ResourceDisplayPluginManager
  Calls the corresponding method in all currently installed InstanceDisplayPlugins.
initKeymap(JTextComponent) - Static method in class edu.stanford.smi.protegex.owl.swrl.ui.code.SWRLTextField
initKeymap(JTextComponent) - Static method in class edu.stanford.smi.protegex.owl.ui.code.OWLTextFormatter
initMiddleBar(JToolBar) - Method in class edu.stanford.smi.protegex.owl.swrl.ui.code.SWRLSymbolPanel
initMiddleBar(JToolBar) - Method in class edu.stanford.smi.protegex.owl.ui.code.OWLSymbolPanel
initMiddleBar(JToolBar) - Method in class edu.stanford.smi.protegex.owl.ui.code.SymbolPanel
InitOWLDatabaseFromFileWizardPage - Class in edu.stanford.smi.protegex.owl.database
InitOWLDatabaseFromFileWizardPage(Wizard, CreateOWLDatabaseFromFileProjectPlugin) - Constructor for class edu.stanford.smi.protegex.owl.database.InitOWLDatabaseFromFileWizardPage
initProject(Project, String, String) - Static method in class edu.stanford.smi.protegex.owl.ProtegeOWL
  Initializes a Project so that it points to an existing OWL file.
initResourceDisplay(RDFResource, JPanel) - Method in class edu.stanford.smi.protegex.owl.ui.cls.SwitchClassDefinitionResourceDisplayPlugin
initResourceDisplay(RDFResource, JPanel) - Method in interface edu.stanford.smi.protegex.owl.ui.resourcedisplay.ResourceDisplayPlugin
  Called whenever a new instance is displayed in a ResourceDisplay.
initResourceDisplay(RDFResource, JPanel) - Method in class edu.stanford.smi.protegex.owl.ui.resourcedisplay.TriplesViewResourceDisplayPlugin
initTopBar(JToolBar) - Method in class edu.stanford.smi.protegex.owl.swrl.ui.code.SWRLSymbolPanel
initTopBar(JToolBar) - Method in class edu.stanford.smi.protegex.owl.ui.code.OWLSymbolPanel
initTopBar(JToolBar) - Method in class edu.stanford.smi.protegex.owl.ui.code.SymbolPanel
inlineObject(Visitable, TripleStore, XMLWriter) - Static method in class edu.stanford.smi.protegex.owl.writer.rdfxml.util.Util
  Inserts the object of a triple.
InlineResourceChecker - Class in edu.stanford.smi.protegex.owl.writer.rdfxml.util
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: March 22, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm

  A class that can be used to check if a certain type of resource can be inlined.
InlineResourceChecker() - Constructor for class edu.stanford.smi.protegex.owl.writer.rdfxml.util.InlineResourceChecker
input_stream - Variable in class edu.stanford.smi.protegex.owl.model.classparser.compact.CompactParserTokenManager
input_stream - Variable in class edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxParserTokenManager
input_stream - Variable in class edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParserTokenManager
inputStream - Variable in class edu.stanford.smi.protegex.owl.model.classparser.compact.JavaCharStream
inputStream - Variable in class edu.stanford.smi.protegex.owl.model.classparser.dl.JavaCharStream
inputStream - Variable in class edu.stanford.smi.protegex.owl.model.classparser.manchester.JavaCharStream
InputStreamSource - Interface in edu.stanford.smi.protegex.owl.repository.util
insertAboutAttribute(RDFResource, XMLWriter) - Static method in class edu.stanford.smi.protegex.owl.writer.rdfxml.util.Util
  Inserts an rdf:about attribute for the specified resource.
insertCls(Cls) - Method in class edu.stanford.smi.protegex.owl.ui.code.SymbolPanel
insertFrameStore(FrameStore, int) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. internal Protege detail
insertFrameStore(FrameStore) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. internal Protege detail
insertHeaderComponent(Component, int) - Method in class edu.stanford.smi.protegex.owl.ui.OWLLabeledComponent
insertIDOrAboutAttribute(RDFResource, TripleStore, XMLWriter) - Static method in class edu.stanford.smi.protegex.owl.writer.rdfxml.util.Util
  Inserts an rdf:ID attribute for the specified resource.
insertIndividual(RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.code.SymbolPanel
insertProperties(RDFResource, TripleStore, XMLWriter, boolean) - Static method in class edu.stanford.smi.protegex.owl.writer.rdfxml.util.Util
  Inserts a property-value triple for a specified resource.
insertPropertyName() - Method in class edu.stanford.smi.protegex.owl.ui.conditions.PropertySuggestionPopup
insertRepositoriesIntoOwlModel(OWLModel) - Method in class edu.stanford.smi.protegex.owl.model.factory.AbstractOwlProjectCreator
insertResourceAsElement(RDFResource, XMLWriter) - Static method in class edu.stanford.smi.protegex.owl.writer.rdfxml.util.Util
  Creates a new element, with a tag name that reflects the default namespace of the `XMLWriter`
insertResourceAttribute(RDFResource, XMLWriter) - Static method in class edu.stanford.smi.protegex.owl.writer.rdfxml.util.Util
  Inserts an rdf:resource attribute for the specified resource.
insertRow(Cls) - Method in class edu.stanford.smi.protegex.owl.ui.owltable.AbstractOWLTableModel
insertSlot(Slot) - Method in class edu.stanford.smi.protegex.owl.ui.code.SymbolPanel
insertText(String) - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.manchester.ManchesterOWLTextPane
insertText(String, int) - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.manchester.ManchesterOWLTextPane
insertText(String) - Method in interface edu.stanford.smi.protegex.owl.ui.code.SymbolEditor
  Inserts some text at the caret position.
insertText(String, int) - Method in interface edu.stanford.smi.protegex.owl.ui.code.SymbolEditor
  Inserts some text at the caret position and specifies the new caret position within the inserted text.
insertText(String) - Method in class edu.stanford.smi.protegex.owl.ui.code.SymbolEditorComponent
insertText(String, int) - Method in class edu.stanford.smi.protegex.owl.ui.code.SymbolEditorComponent
insertText(String) - Method in class edu.stanford.smi.protegex.owl.ui.code.SymbolTextArea
insertText(String, int) - Method in class edu.stanford.smi.protegex.owl.ui.code.SymbolTextArea
insertText(String) - Method in class edu.stanford.smi.protegex.owl.ui.code.SymbolTextField
insertText(String, int) - Method in class edu.stanford.smi.protegex.owl.ui.code.SymbolTextField
insertVersionData(PropertyList) - Static method in class edu.stanford.smi.protegex.owl.ui.menu.OWLBackwardsCompatibilityProjectFixups
INSTANCE - Static variable in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGVocabulary.Ask
instance - Variable in class edu.stanford.smi.protegex.owl.ui.widget.MultiWidgetPropertyWidget
INSTANCE_OF - Static variable in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGVocabulary.Tell
instanceAdded(RDFSClass, RDFResource, ClsEvent) - Method in class edu.stanford.smi.protegex.owl.model.event.ClassAdapter
instanceAdded(RDFSClass, RDFResource) - Method in class edu.stanford.smi.protegex.owl.model.event.ClassAdapter
instanceAdded(RDFSClass, RDFResource) - Method in interface edu.stanford.smi.protegex.owl.model.event.ClassListener
  Called after a (new) resource was made an instance of a class.
instanceCreated(KnowledgeBaseEvent) - Method in class edu.stanford.smi.protegex.owl.model.event.ModelAdapter
  Deprecated.
instanceCreated(KnowledgeBaseEvent) - Method in interface edu.stanford.smi.protegex.owl.model.event.ProtegeKnowledgeBaseListener
  Deprecated.
instanceDeleted(KnowledgeBaseEvent) - Method in class edu.stanford.smi.protegex.owl.model.event.ModelAdapter
  Deprecated.
instanceDeleted(KnowledgeBaseEvent) - Method in interface edu.stanford.smi.protegex.owl.model.event.ProtegeKnowledgeBaseListener
  Deprecated.
InstanceNameComponent - Class in edu.stanford.smi.protegex.owl.ui.resourcedisplay
  A Component that can be used to display type(s) and name of an Instance.
InstanceNameComponent() - Constructor for class edu.stanford.smi.protegex.owl.ui.resourcedisplay.InstanceNameComponent
InstanceNameEditor - Class in edu.stanford.smi.protegex.owl.ui.resourcedisplay
InstanceNameEditor() - Constructor for class edu.stanford.smi.protegex.owl.ui.resourcedisplay.InstanceNameEditor
instanceRemoved(RDFSClass, RDFResource, ClsEvent) - Method in class edu.stanford.smi.protegex.owl.model.event.ClassAdapter
instanceRemoved(RDFSClass, RDFResource) - Method in class edu.stanford.smi.protegex.owl.model.event.ClassAdapter
instanceRemoved(RDFSClass, RDFResource) - Method in interface edu.stanford.smi.protegex.owl.model.event.ClassListener
  Called after a resource was removed from the instances of a class.
INSTANCES - Static variable in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGVocabulary.Ask
InstancesList - Class in edu.stanford.smi.protegex.owl.ui.individuals
InstancesList(Action) - Constructor for class edu.stanford.smi.protegex.owl.ui.individuals.InstancesList
INT - Static variable in interface edu.stanford.smi.protegex.owl.model.XSDNames
INT_DATATYPE - Static variable in interface edu.stanford.smi.protegex.owl.writer.rdfxml.renderer.Vocab
INT_EQUALS - Static variable in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGVocabulary.Language
INT_MAX - Static variable in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGVocabulary.Language
INT_MIN - Static variable in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGVocabulary.Language
INT_RANGE - Static variable in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGVocabulary.Language
Integer() - Method in class edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxParser
INTEGER - Static variable in interface edu.stanford.smi.protegex.owl.model.XSDNames
Integer - Static variable in class edu.stanford.smi.protegex.owl.ui.forms.FormsNames
INTEGER_DIVIDE - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLConstants.BuiltIns
  Deprecated.
INTEGER_DIVIDE - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.CoreBuiltIns
INTEGER_LITERAL - Static variable in interface edu.stanford.smi.protegex.owl.model.classparser.compact.CompactParserConstants
INTEGER_LITERAL - Static variable in interface edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxParserConstants
INTEGER_LITERAL - Static variable in interface edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParserConstants
integer_value - Static variable in class edu.stanford.smi.protegex.owl.ui.forms.FormsNames
IntegerResultReasonerTask - Interface in edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: May 6, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
IntegerResultReasonerTask - Interface in edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: May 6, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
integerTypes - Static variable in class edu.stanford.smi.protegex.owl.model.impl.XMLSchemaDatatypes
Intersection - Static variable in class edu.stanford.smi.protegex.owl.swrl.model.SQWRLNames
INTERSECTION_CLASS - Static variable in interface edu.stanford.smi.protegex.owl.model.OWLNames.Cls
INTERSECTION_OF - Static variable in interface edu.stanford.smi.protegex.owl.model.OWLNames.Slot
IntersectionClassOperand() - Method in class edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxParser
Intersects - Static variable in class edu.stanford.smi.protegex.owl.swrl.model.SQWRLNames
intializeImportOwlNamespaces() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
inUI - Static variable in class edu.stanford.smi.protegex.owl.jena.JenaOWLModel
invalidateIndividualsCache(OWLModel) - Method in class edu.stanford.smi.protegex.owl.inference.util.ReasonerUtil
invalidateNamedClsCache(OWLModel) - Method in class edu.stanford.smi.protegex.owl.inference.util.ReasonerUtil
invalidatePropertiesCache(OWLModel) - Method in class edu.stanford.smi.protegex.owl.inference.util.ReasonerUtil
INVERSE - Static variable in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGVocabulary.Language
INVERSE_FUNCTIONAL_PROPERTY - Static variable in interface edu.stanford.smi.protegex.owl.model.OWLNames.Cls
INVERSE_OF - Static variable in interface edu.stanford.smi.protegex.owl.model.OWLNames.Slot
InverseOfFunctionalMustBeInverseFunctionalTest - Class in edu.stanford.smi.protegex.owl.testing.sanity
InverseOfFunctionalMustBeInverseFunctionalTest() - Constructor for class edu.stanford.smi.protegex.owl.testing.sanity.InverseOfFunctionalMustBeInverseFunctionalTest
InverseOfInverseFunctionalMustBeFunctionalTest - Class in edu.stanford.smi.protegex.owl.testing.sanity
InverseOfInverseFunctionalMustBeFunctionalTest() - Constructor for class edu.stanford.smi.protegex.owl.testing.sanity.InverseOfInverseFunctionalMustBeFunctionalTest
InverseOfSubpropertyMustBeSubpropertyOfInverseOfSuperpropertyTest - Class in edu.stanford.smi.protegex.owl.testing.sanity
InverseOfSubpropertyMustBeSubpropertyOfInverseOfSuperpropertyTest() - Constructor for class edu.stanford.smi.protegex.owl.testing.sanity.InverseOfSubpropertyMustBeSubpropertyOfInverseOfSuperpropertyTest
InverseOfSymmetricPropertyMustBeSymmetricPropertyTest - Class in edu.stanford.smi.protegex.owl.testing.sanity
InverseOfSymmetricPropertyMustBeSymmetricPropertyTest() - Constructor for class edu.stanford.smi.protegex.owl.testing.sanity.InverseOfSymmetricPropertyMustBeSymmetricPropertyTest
InverseOfTopLevelPropertyMustBeTopLevelPropertyTest - Class in edu.stanford.smi.protegex.owl.testing.sanity
InverseOfTopLevelPropertyMustBeTopLevelPropertyTest() - Constructor for class edu.stanford.smi.protegex.owl.testing.sanity.InverseOfTopLevelPropertyMustBeTopLevelPropertyTest
InverseOfTransitivePropertyMustBeTransitivePropertyTest - Class in edu.stanford.smi.protegex.owl.testing.sanity
InverseOfTransitivePropertyMustBeTransitivePropertyTest() - Constructor for class edu.stanford.smi.protegex.owl.testing.sanity.InverseOfTransitivePropertyMustBeTransitivePropertyTest
InversePropertyMatrixColumn - Class in edu.stanford.smi.protegex.owl.ui.matrix.property
InversePropertyMatrixColumn() - Constructor for class edu.stanford.smi.protegex.owl.ui.matrix.property.InversePropertyMatrixColumn
InversePropertyMustHaveMatchingRangeAndDomainTest - Class in edu.stanford.smi.protegex.owl.testing.sanity
InversePropertyMustHaveMatchingRangeAndDomainTest() - Constructor for class edu.stanford.smi.protegex.owl.testing.sanity.InversePropertyMustHaveMatchingRangeAndDomainTest
invokeARP(ARP) - Method in interface edu.stanford.smi.protegex.owl.jena.parser.ProtegeOWLParser.ARPInvokation
IS_COMMENTED_OUT - Static variable in interface edu.stanford.smi.protegex.owl.model.ProtegeNames.Slot
IS_DEFINED_BY - Static variable in interface edu.stanford.smi.protegex.owl.model.RDFSNames.Slot
IS_RULE_ENABLED - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.Annotations
IS_RULE_GROUP_ENABLED - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.Annotations
isAbsoluteURI(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
isAbstract() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeCls
  Deprecated. no OWL equivalent
isAbstract(Cls) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not supported in OWL
isActiveTriple(RDFResource, RDFProperty, Object) - Method in class edu.stanford.smi.protegex.owl.model.triplestore.impl.TripleStoreModelImpl
isActiveTriple(RDFResource, RDFProperty, Object) - Method in interface edu.stanford.smi.protegex.owl.model.triplestore.TripleStoreModel
  Checks if a given triple is stored in the currently active TripleStore.
isActiveTriple(RDFResource, RDFProperty, Object) - Method in class edu.stanford.smi.protegex.owl.server.triplestore.ClientTripleStoreModel
isAddEnabled() - Method in class edu.stanford.smi.protegex.owl.ui.components.rdflist.RDFListComponent
isAddEnabledAt(int) - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.DisjointClassesTableModel
isAddEnabledAt(int) - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTableModel
  Checks whether the "add named class" function is enabled for a given row.
isAddEnabledAt(int) - Method in class edu.stanford.smi.protegex.owl.ui.owltable.AbstractOWLTableModel
isAddEnabledAt(int) - Method in interface edu.stanford.smi.protegex.owl.ui.owltable.OWLTableModel
isAnnotationProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
isAnnotationProperty() - Method in interface edu.stanford.smi.protegex.owl.model.RDFProperty
  Checks whether this Slot is an OWL AnnotationProperty.
isAnnotationProperty(OWLModel, String, boolean) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
isAnnotationProperty(OWLModel, URI, boolean) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
isAnnotationProperty(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
isAnonymous() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLAnonymousClass
isAnonymous() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFIndividual
isAnonymous() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
isAnonymous() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFSNamedClass
isAnonymous() - Method in interface edu.stanford.smi.protegex.owl.model.RDFResource
  Checks whether this represents an anonymous resource / bnode.
isAnonymous() - Method in interface edu.stanford.smi.protegex.owl.model.RDFSClass
  Checks whether this is an anonymous class.
isAnonymousResource(RDFResource) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
  Deprecated.
isAnonymousResource(RDFResource) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Deprecated.
isAnonymousResourceName(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
isAnonymousResourceName(String) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
isAnonymousResourceName(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
isAnonymousResourceName(OWLModel, URI) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
isAssociatedTriplestoreEditable() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLOntology
isAutomaticallyShowInferredHierarchy() - Method in class edu.stanford.smi.protegex.owl.inference.util.ReasonerPreferences
isAutoRepairEnabled() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
isAutoRepairEnabled() - Method in interface edu.stanford.smi.protegex.owl.testing.OWLTestManager
isAutoSynchronizationEnabled() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.DefaultProtegeOWLReasoner
isAutoSynchronizationEnabled() - Method in interface edu.stanford.smi.protegex.owl.inference.protegeowl.ProtegeOWLReasoner
  Deprecated.
isAutoSynchronizationEnabled() - Method in class edu.stanford.smi.protegex.owl.inference.reasoner.AbstractProtegeReasoner
isAutoSynchronizationEnabled() - Method in interface edu.stanford.smi.protegex.owl.inference.reasoner.ProtegeReasoner
isAutoUpdatingFacetValues() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not supported in OWL
isBeforeDatabaseInclusion(PropertyList) - Static method in class edu.stanford.smi.protegex.owl.ui.menu.OWLBackwardsCompatibilityProjectFixups
isBeingDeleted() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeInstance
isBuild - Static variable in class edu.stanford.smi.protegex.owl.ui.profiles.ProfileSelectionWizardPage
isCallCachingEnabled() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not needed
isCancelled() - Method in class edu.stanford.smi.protegex.owl.model.AbstractTask
isCancelled() - Method in interface edu.stanford.smi.protegex.owl.model.ProgressManager
  Checks if the user has cancelled the current process.
isCancelled() - Method in interface edu.stanford.smi.protegex.owl.model.Task
  Checks whether this Task has been cancelled.
isCanInline() - Method in class edu.stanford.smi.protegex.owl.writer.rdfxml.util.InlineResourceChecker
  This method should be used to check if the most recent visted resource can be inlined.
isCellEditable(int, int) - Method in class edu.stanford.smi.protegex.owl.swrl.ui.table.SWRLTableModel
isCellEditable(int, int) - Method in class edu.stanford.smi.protegex.owl.ui.classform.component.property.PropertyFormTableModel
isCellEditable(int, int) - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.DisjointClassesTableModel
isCellEditable(EventObject) - Method in class edu.stanford.smi.protegex.owl.ui.code.SymbolCellEditor
isCellEditable(EventObject) - Method in class edu.stanford.smi.protegex.owl.ui.components.annotations.AnnotationsValueEditor
isCellEditable(int, int) - Method in class edu.stanford.smi.protegex.owl.ui.components.literaltable.LiteralTableModel
isCellEditable(int, int) - Method in class edu.stanford.smi.protegex.owl.ui.components.triples.TriplesTableModel
isCellEditable(int, int) - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTableModel
isCellEditable(RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.matrix.AnnotationPropertyMatrixColumn
isCellEditable(RDFResource) - Method in interface edu.stanford.smi.protegex.owl.ui.matrix.EditableMatrixColumn
isCellEditable(int, int) - Method in class edu.stanford.smi.protegex.owl.ui.matrix.MatrixTableModel
isCellEditable(RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.matrix.NameMatrixColumn
isCellEditable(int, int) - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.imports.wizard.AddedPrefixesTableModel
isCellEditable(int, int) - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.prefixes.PrefixesTableModel
isCellEditable(int, int) - Method in class edu.stanford.smi.protegex.owl.ui.owltable.AbstractOWLTableModel
isCellEditable(int, int) - Method in class edu.stanford.smi.protegex.owl.ui.testing.OWLTestSettingsTableModel
isClosed() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFList
isClosed() - Method in interface edu.stanford.smi.protegex.owl.model.RDFList
  Checks whether this is eventually terminated with an rdf:rest rdf:nil triple.
isClosed() - Method in class edu.stanford.smi.protegex.owl.ui.classform.component.property.PropertyFormTable
isClsMetaCls() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeCls
  Deprecated. not needed
isClsMetaCls(Cls) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not needed
isCommentedOut(RDFSClass) - Method in class edu.stanford.smi.protegex.owl.model.util.ClassCommenter
isComplete() - Method in class edu.stanford.smi.protegex.owl.database.OWLDatabaseWizardPage
isComplete(PropertyList) - Method in class edu.stanford.smi.protegex.owl.jena.JenaKnowledgeBaseFactory
IsConceptIntersectionSatisfiableTask - Class in edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Aug 17, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
IsConceptIntersectionSatisfiableTask(OWLClass[], ProtegeOWLReasoner) - Constructor for class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.IsConceptIntersectionSatisfiableTask
IsConceptIntersectionSatisfiableTask - Class in edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Aug 17, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
IsConceptIntersectionSatisfiableTask(OWLClass[], ProtegeReasoner) - Constructor for class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.IsConceptIntersectionSatisfiableTask
isConcrete() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeCls
  Deprecated. no OWL equivalent
isConfirmationNeeded(OWLModel) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.OWLUI
isConfirmed(Project, boolean) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.OWLUI
  Deprecated.
isConfirmed(OWLModel, boolean) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.OWLUI
isConnected() - Method in class edu.stanford.smi.protegex.owl.inference.dig.DefaultProtegeDIGReasoner
isConnected() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.DefaultProtegeOWLReasoner
isConnected() - Method in interface edu.stanford.smi.protegex.owl.inference.protegeowl.ProtegeOWLReasoner
  Deprecated. Determines if the ProtegeOWLReasoner can connect to an external DIG compliant reasoner to provide reasoning services.
isConsistent() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLNamedClass
isConsistent() - Method in interface edu.stanford.smi.protegex.owl.model.OWLNamedClass
  Determines whether this class has been flagged as being inconsistent or not.
isConsistentOWLClass(OWLModel, String, boolean) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
isConstraintChecking(OWLModel) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.OWLUI
isCorrectAndIncomplete(String) - Method in class edu.stanford.smi.protegex.owl.swrl.parser.SWRLParser
  If the rule is correct and incomplete return 'true'; if the rule has errors or is correct and complete, return 'false'.
isCorrectJavaImplementationClass(FrameID, Collection, Class) - Method in class edu.stanford.smi.protegex.owl.model.factory.OWLJavaFactory
isCorrectJavaImplementationClass(FrameID, Collection, Class) - Method in class edu.stanford.smi.protegex.owl.swrl.model.factory.SWRLJavaFactory
isCreateEnabled() - Method in class edu.stanford.smi.protegex.owl.ui.components.multiresource.MultiResourceComponent
isCreateEnabled() - Method in class edu.stanford.smi.protegex.owl.ui.components.rdflist.RDFListComponent
isCreateEnabled() - Method in class edu.stanford.smi.protegex.owl.ui.components.singleresource.SingleResourceComponent
isCreateEnabledAt(int) - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTableModel
  Checks whether an anonymous class could be added/created at a given row.
isCustomType() - Method in class edu.stanford.smi.protegex.owl.javacode.RDFPropertyAtClassCode
isDatatypeName(String) - Method in class edu.stanford.smi.protegex.owl.model.classparser.DatatypeNameChecker
isDatatypeProperty(OntModel, OntProperty) - Static method in class edu.stanford.smi.protegex.owl.jena.Jena
isDatatypeProperty(RDFSNamedClass, RDFProperty) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.OWLWidgetUtil
isDatatypeProperty(RDFSDatatype, RDFSNamedClass, RDFProperty) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.OWLWidgetUtil
isDateSlot(RDFProperty) - Static method in class edu.stanford.smi.protegex.owl.model.impl.XMLSchemaDatatypes
isDateTimeSlot(RDFProperty) - Static method in class edu.stanford.smi.protegex.owl.model.impl.XMLSchemaDatatypes
isDefaultAnonymousType(Cls) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
isDefaultAnonymousType(Collection) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
isDefaultClsMetaCls() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeCls
  Deprecated. not needed
isDefaultClsMetaCls(Cls) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not needed
isDefaultFacetMetaCls() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeCls
  Deprecated. not needed
isDefaultFacetMetaCls(Cls) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not needed
isDefaultSlotMetaCls() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeCls
  Deprecated. not needed
isDefaultSlotMetaCls(Cls) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not needed
isDefaultStyle() - Static method in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
isDefaultSynchronized() - Method in class edu.stanford.smi.protegex.owl.ui.cls.AssertedClassesPanel
isDefaultSynchronized() - Method in interface edu.stanford.smi.protegex.owl.ui.cls.Hierarchy
  Checks if this Hierarchy shall be by default synchronized with the asserted class tree.
isDefaultSynchronized() - Method in class edu.stanford.smi.protegex.owl.ui.existential.ExistentialTreePanel
isDefaultSynchronized() - Method in class edu.stanford.smi.protegex.owl.ui.explorer.ExplorerTreePanel
isDefaultSynchronized() - Method in class edu.stanford.smi.protegex.owl.ui.subsumption.SubsumptionTreePanel
isDefined() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLRestriction
isDefined() - Method in interface edu.stanford.smi.protegex.owl.model.OWLRestriction
  Checks whether this restriction has been completely defined already.
isDefinedClass() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLNamedClass
isDefinedClass() - Method in interface edu.stanford.smi.protegex.owl.model.OWLNamedClass
  Checks if this is a "defined" class, with necessary and sufficient conditions.
isDefinition() - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTableItem
isDefinition(int) - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTableModel
isDeleted() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeInstance
isDeleteEnabled(int[]) - Method in class edu.stanford.smi.protegex.owl.ui.components.literaltable.LiteralTableModel
isDeleteEnabled() - Method in class edu.stanford.smi.protegex.owl.ui.components.rdflist.RDFListComponent
isDeleteEnabled(int) - Method in class edu.stanford.smi.protegex.owl.ui.components.triples.TriplesTableModel
isDeleteEnabledFor(RDFSClass) - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.DisjointClassesTableModel
isDeleteEnabledFor(RDFSClass) - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.PropertiesDefinitionTableModel
isDeleteEnabledFor(RDFSClass) - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.PropertiesSuperclassesTableModel
isDeleteEnabledFor(RDFSClass) - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTableModel
isDeleteEnabledFor(RDFSClass) - Method in interface edu.stanford.smi.protegex.owl.ui.owltable.OWLTableModel
isDependentOn(RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.matrix.cls.ExistentialMatrixColumn
isDependentOn(RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.matrix.cls.SubclassesMatrixFilter
isDependentOn(RDFResource) - Method in interface edu.stanford.smi.protegex.owl.ui.matrix.DependentMatrixColumn
  Called after any RDFResource has been deleted from the ontology.
isDependentOn(RDFResource) - Method in interface edu.stanford.smi.protegex.owl.ui.matrix.DependentMatrixFilter
  Called after any RDFResource has been deleted from the ontology.
isDependentOn(RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.matrix.MatrixTableModel
isDeprecated() - Method in interface edu.stanford.smi.protegex.owl.model.Deprecatable
  Checks whether this has been declared deprecated (using owl:DeprecatedClass or owl:DeprecatedProperty).
isDeprecated() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
isDeprecated() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFSNamedClass
isDeprecated(FrameWithBrowserText) - Method in class edu.stanford.smi.protegex.owl.ui.ResourceRendererWithBrowserText
isDesignTime() - Method in class edu.stanford.smi.protegex.owl.ui.classform.component.FormComponent
isDirectExistentialDependent(OWLNamedClass, OWLObjectProperty, OWLNamedClass) - Static method in class edu.stanford.smi.protegex.owl.ui.existential.Existential
  Deprecated.
isDirectProperty(int) - Method in class edu.stanford.smi.protegex.owl.ui.clsproperties.RDFPropertiesTableModel
isDisjointTo(OWLClass, OWLClass, ReasonerTaskListener) - Method in class edu.stanford.smi.protegex.owl.inference.dig.DefaultProtegeDIGReasoner
isDisjointTo(OWLClass, OWLClass) - Method in class edu.stanford.smi.protegex.owl.inference.dig.DefaultProtegeDIGReasoner
isDisjointTo(OWLClass, OWLClass, ReasonerTaskListener) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.DefaultProtegeOWLReasoner
isDisjointTo(OWLClass, OWLClass, ReasonerTaskListener) - Method in interface edu.stanford.smi.protegex.owl.inference.protegeowl.ProtegeOWLReasoner
  Deprecated. Determines if the specified classes are disjoint from each other.
isDisjointTo(OWLClass, OWLClass) - Method in class edu.stanford.smi.protegex.owl.inference.reasoner.AbstractProtegeReasoner
isDisjointTo(OWLClass, OWLClass) - Method in interface edu.stanford.smi.protegex.owl.inference.reasoner.ProtegeReasoner
  Determines if the specified classes are disjoint from each other.
IsDisjointToTask - Class in edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Sep 12, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
IsDisjointToTask(ProtegeOWLReasoner, OWLClass, OWLClass) - Constructor for class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.IsDisjointToTask
IsDisjointToTask - Class in edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Sep 12, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
IsDisjointToTask(ProtegeReasoner, OWLClass, OWLClass) - Constructor for class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.IsDisjointToTask
isDomainDefined() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
isDomainDefined(boolean) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
isDomainDefined() - Method in interface edu.stanford.smi.protegex.owl.model.RDFProperty
  Checks whether the domain of this property has been explicitly defined.
isDomainDefined(boolean) - Method in interface edu.stanford.smi.protegex.owl.model.RDFProperty
  Checks whether the domain of this property has been explicitly defined.
isDragAndDropSupported(OWLModel) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.OWLUI
isDroppable(JComponent, Point) - Method in interface edu.stanford.smi.protegex.owl.ui.classform.form.drag.DragClient
isDublinCoreRedirectedToDLVersion(RepositoryManager) - Static method in class edu.stanford.smi.protegex.owl.repository.util.RepositoryUtil
isEditable() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeInstance
isEditable() - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.DisjointClassesTableModel
isEditable() - Method in class edu.stanford.smi.protegex.owl.ui.clsproperties.PropertyRestrictionsTree
isEditable() - Method in class edu.stanford.smi.protegex.owl.ui.components.AbstractPropertyValuesComponent
isEditable(int) - Method in class edu.stanford.smi.protegex.owl.ui.components.multiresource.MultiResourceListModel
isEditable() - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTableModel
isEditable() - Method in class edu.stanford.smi.protegex.owl.ui.owltable.AbstractOWLTableModel
isEditable() - Method in interface edu.stanford.smi.protegex.owl.ui.owltable.OWLTableModel
isEditable() - Method in class edu.stanford.smi.protegex.owl.ui.widget.AbstractPropertyValuesWidget
isEditableTriple(RDFResource, RDFProperty, Object) - Method in class edu.stanford.smi.protegex.owl.model.triplestore.impl.TripleStoreModelImpl
isEditableTriple(RDFResource, RDFProperty, Object) - Method in interface edu.stanford.smi.protegex.owl.model.triplestore.TripleStoreModel
  Checks if a given triple is stored in an editable TripleStore.
isEditableTriple(RDFResource, RDFProperty, Object) - Method in class edu.stanford.smi.protegex.owl.server.triplestore.ClientTripleStoreModel
isEditableTripleStore(TripleStore) - Method in class edu.stanford.smi.protegex.owl.model.triplestore.impl.TripleStoreModelImpl
isEditableTripleStore(TripleStore) - Method in interface edu.stanford.smi.protegex.owl.model.triplestore.TripleStoreModel
isEditableTripleStore(TripleStore) - Method in class edu.stanford.smi.protegex.owl.server.triplestore.ClientTripleStoreModel
isEmpty() - Method in class edu.stanford.smi.protegex.owl.jena.graph.ProtegeGraph
IsEmpty - Static variable in class edu.stanford.smi.protegex.owl.swrl.model.SQWRLNames
isEnabled() - Method in class edu.stanford.smi.protegex.owl.swrl.model.impl.DefaultSWRLImp
isEnabled() - Method in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLImp
isEnabled() - Method in class edu.stanford.smi.protegex.owl.ui.components.triples.AbstractTriplesComponent
isEnabledFor(int[]) - Method in class edu.stanford.smi.protegex.owl.ui.classform.component.property.DeleteRowAction
isEnabledFor(RDFSClass, int) - Method in class edu.stanford.smi.protegex.owl.ui.owltable.DeleteRowAction
isEnabledFor(RDFSClass, int) - Method in interface edu.stanford.smi.protegex.owl.ui.owltable.OWLTableAction
isEnumerationProperty() - Method in class edu.stanford.smi.protegex.owl.ui.components.AbstractPropertyValuesComponent
  Checks if the property has an owl:oneOf class as its range at the given type.
ISET - Static variable in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGVocabulary.Language
isExcludedResource(RDFResource) - Static method in class edu.stanford.smi.protegex.owl.writer.rdfxml.util.Util
isExclusive() - Method in class edu.stanford.smi.protegex.owl.ui.properties.range.ExInclusiveToggleAction
isExistingRDFResourceWithRDFSLabel(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
isExpandShortNameInMethods() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
isExpandShortNameInMethods() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
isExpansionEvent(KeyEvent) - Method in class edu.stanford.smi.protegex.owl.ui.code.ExpansionKeyListener
isExternalResourcesSupported(OWLModel) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.OWLUI
isFacetMetaCls() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeCls
  Deprecated. not needed
isFacetMetaCls(Cls) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not needed
isFakeProtege3Type() - Method in enum edu.stanford.smi.protegex.owl.model.factory.OWLFactoryClassType
isFeatureSupported(OWLModel, OntClass) - Static method in class edu.stanford.smi.protegex.owl.ui.profiles.ProfilesManager
isFileToDatabase() - Method in class edu.stanford.smi.protegex.owl.database.OWLDatabaseWizardPage
isFileToDatabase() - Method in class edu.stanford.smi.protegex.owl.database.OWLDatabaseWizardPageExistingSources
isFillerDefined() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLRestriction
isFilteredOutResource(RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.code.OWLResourceNameMatcher
isForcedReadOnlySelected() - Method in class edu.stanford.smi.protegex.owl.ui.repository.wizard.impl.RelativeURLSpecificationWizardPanel
isForcedToBeReadOnly(String) - Static method in class edu.stanford.smi.protegex.owl.repository.util.RepositoryUtil
isForceReadOnly() - Method in class edu.stanford.smi.protegex.owl.repository.impl.AbstractLocalRepository
isForceReadOnly() - Method in class edu.stanford.smi.protegex.owl.ui.repository.wizard.impl.FileBrowserPanel
isFunctional() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
isFunctional() - Method in interface edu.stanford.smi.protegex.owl.model.RDFProperty
  Checks whether this is a functional property.
isFunctionalProperty(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLNamedClass
isFunctionalProperty(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFSNamedClass
isFunctionalProperty(RDFProperty) - Method in interface edu.stanford.smi.protegex.owl.model.RDFSNamedClass
  Checks whether a given property is "functional" at this class.
isFunctionalProperty(RDFSNamedClass, RDFProperty) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.OWLWidgetUtil
isGlobalRepository(Repository) - Method in class edu.stanford.smi.protegex.owl.repository.RepositoryManager
isIdChar(char) - Static method in class edu.stanford.smi.protegex.owl.model.classparser.ParserUtils
isIdChar(char) - Method in class edu.stanford.smi.protegex.owl.ui.code.OWLResourceNameMatcher
isIdChar(char) - Method in interface edu.stanford.smi.protegex.owl.ui.code.ResourceNameMatcher
isIdChar(char) - Static method in class edu.stanford.smi.protegex.owl.ui.code.SymbolTextField
isIgnoreNecessaryConditionsOnDefinedClasses() - Method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DIGTranslatorPreferences
isIgnorePrefixesInSearch(OWLModel) - Static method in class edu.stanford.smi.protegex.owl.model.framestore.OWLFrameStore
isImplicitImport(String) - Static method in class edu.stanford.smi.protegex.owl.jena.parser.ImplicitImports
  Checks whether a given namespace shall be imported even if no explicit owl:imports statement is found.
isImported(String) - Static method in class edu.stanford.smi.protegex.owl.jena.parser.OWLImportsCache
isImportedResource(OntModel, Model, OntResource) - Static method in class edu.stanford.smi.protegex.owl.jena.Jena
isImporting(TripleStore) - Method in class edu.stanford.smi.protegex.owl.jena.parser.AbstractStatefulTripleProcessor
isIncluded() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeInstance
isIncompatibleWidgetName(String) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.OWLWidgetMapper
isInconsistent(Cls) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
isInDefaultNamespace(RDFResource, XMLWriter) - Static method in class edu.stanford.smi.protegex.owl.writer.rdfxml.util.Util
  Checks whether a resource is in the default namespace for an `XMLWriter`
isIndenting() - Method in class edu.stanford.smi.protegex.owl.writer.xml.XMLWriterPreferences
isInDirectOWLPropertyDomain(OWLModel, String, String, boolean) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
isInDirectOWLPropertyDomain(OWLModel, URI, URI, boolean) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
isInDirectPropertyRange(OWLModel, String, String, boolean) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
isInDirectPropertyRange(OWLModel, URI, URI, boolean) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
isIndividual(OWLModel, String, boolean) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
isIndividual(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
isIndividual(OWLModel, URI) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
isInherited() - Method in class edu.stanford.smi.protegex.owl.ui.clsproperties.NewRestrictionTreeNode
isInherited() - Method in class edu.stanford.smi.protegex.owl.ui.clsproperties.OldRestrictionTreeNode
isInherited() - Method in class edu.stanford.smi.protegex.owl.ui.clsproperties.PropertyTreeNode
isInherited() - Method in class edu.stanford.smi.protegex.owl.ui.clsproperties.RestrictionTreeNode
isInherited() - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTableItem
isInherited(Cls) - Method in class edu.stanford.smi.protegex.owl.ui.properties.domain.OWLDomainTableModel
isInOWLPropertyDomain(OWLModel, String, String, boolean) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
isInOWLPropertyDomain(OWLModel, URI, URI, boolean) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
isInPropertyRange(OWLModel, String, String, boolean) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
isInPropertyRange(OWLModel, URI, URI, boolean) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
isInRuleGroup(String) - Method in class edu.stanford.smi.protegex.owl.swrl.model.impl.DefaultSWRLImp
isInRuleGroup(String) - Method in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLImp
isInRuleGroups(Set<String>) - Method in class edu.stanford.smi.protegex.owl.swrl.model.impl.DefaultSWRLImp
isInRuleGroups(Set<String>) - Method in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLImp
isInSaveTestMode() - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.manchester.ManchesterOWLTextPane
isInSaveTestMode() - Method in class edu.stanford.smi.protegex.owl.ui.code.SymbolTextField
isIntersectionSatisfiable(OWLClass[], ReasonerTaskListener) - Method in class edu.stanford.smi.protegex.owl.inference.dig.DefaultProtegeDIGReasoner
isIntersectionSatisfiable(OWLClass[]) - Method in class edu.stanford.smi.protegex.owl.inference.dig.DefaultProtegeDIGReasoner
isIntersectionSatisfiable(OWLClass[], ReasonerTaskListener) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.DefaultProtegeOWLReasoner
isIntersectionSatisfiable(OWLClass[], ReasonerTaskListener) - Method in interface edu.stanford.smi.protegex.owl.inference.protegeowl.ProtegeOWLReasoner
  Deprecated. Determines if the intersection of the list of specified classes is satisfiable.
isIntersectionSatisfiable(OWLClass[]) - Method in class edu.stanford.smi.protegex.owl.inference.reasoner.AbstractProtegeReasoner
isIntersectionSatisfiable(OWLClass[]) - Method in interface edu.stanford.smi.protegex.owl.inference.reasoner.ProtegeReasoner
  Determines if the intersection of the list of specified classes is satisfiable.
isInToolBar() - Method in class edu.stanford.smi.protegex.owl.ui.actions.ResourceAction
isInvalid(RDFResource, RDFProperty, Collection) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.AbstractPropertyValuesWidget
isInvalidXMLLiteral(RDFProperty, Object) - Static method in class edu.stanford.smi.protegex.owl.ui.components.triples.TriplesTableModel
isInverseFunctional() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLProperty
isInverseFunctional() - Method in interface edu.stanford.smi.protegex.owl.model.OWLProperty
  Checks whether this is an inverse functional property.
isInverseFunctionalProperty(OWLModel, String, boolean) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
isInverseFunctionalProperty(OWLModel, URI, boolean) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
isIsomorphicWith(Graph) - Method in class edu.stanford.smi.protegex.owl.jena.graph.ProtegeGraph
isJournalingEnabled() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not needed
isLeaf(Object) - Method in class edu.stanford.smi.protegex.owl.ui.existential.ExistentialTreeModel
isLexError(Error) - Static method in class edu.stanford.smi.protegex.owl.model.classparser.ParserUtils
isLoading() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not needed
isLocalClassificationProperty(Slot) - Static method in class edu.stanford.smi.protegex.owl.model.framestore.LocalClassificationFrameStore
isLowerCase() - Static method in class edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParserUtil
isMergeImportMode() - Method in class edu.stanford.smi.protegex.owl.database.CreateOWLDatabaseFromFileProjectPlugin
isMergeImportMode() - Method in class edu.stanford.smi.protegex.owl.database.creator.OwlDatabaseFromFileCreator
isMergeImportMode() - Method in class edu.stanford.smi.protegex.owl.jena.creator.OwlProjectFromUriCreator
isMergingImportMode() - Static method in class edu.stanford.smi.protegex.owl.jena.JenaKnowledgeBaseFactory
isMergingImportMode() - Method in class edu.stanford.smi.protegex.owl.jena.parser.ProtegeOWLParser
isMetaclass() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
isMetaclass() - Method in interface edu.stanford.smi.protegex.owl.model.RDFSClass
  Checks whether this is a metaclass, i.e.
isMetaCls() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeCls
  Deprecated.
isMetaCls(Cls) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not needed
isMixedClass() - Method in class edu.stanford.smi.protegex.owl.ui.clsproperties.PropertyRestrictionsTree
isModifiable(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.ImportingOwlNamespaceManager
isModifiable(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLNamespaceManager
isModifiable(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.UnmodifiableNamespaceManager
isModifiable(String) - Method in interface edu.stanford.smi.protegex.owl.model.NamespaceManager
isMoveDownEnabled() - Method in class edu.stanford.smi.protegex.owl.ui.components.rdflist.RDFListComponent
isMoveUpEnabled() - Method in class edu.stanford.smi.protegex.owl.ui.components.rdflist.RDFListComponent
isMulticoloredStyle() - Static method in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
isMultiline() - Method in class edu.stanford.smi.protegex.owl.ui.code.SymbolEditorComponent
isMultiLineProperty(RDFProperty) - Static method in class edu.stanford.smi.protegex.owl.ui.components.annotations.AnnotationsTable
isMultiple() - Method in class edu.stanford.smi.protegex.owl.javacode.RDFPropertyAtClassCode
isNamespaceEditable(String) - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.prefixes.PrefixesTableModel
isNamespaceWithSeparator(String) - Static method in class edu.stanford.smi.protegex.owl.jena.Jena
isNew() - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTableItem
isNull() - Method in class edu.stanford.smi.protegex.owl.ui.widget.TimePanel
isNumericDatatype() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFSDatatype
isNumericDatatype(String) - Static method in class edu.stanford.smi.protegex.owl.model.impl.XMLSchemaDatatypes
isNumericDatatype() - Method in interface edu.stanford.smi.protegex.owl.model.RDFSDatatype
  Checks if this is a numeric type.
isObjectProperty(OntModel, OntProperty) - Static method in class edu.stanford.smi.protegex.owl.jena.Jena
isObjectProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLProperty
isObjectProperty() - Method in interface edu.stanford.smi.protegex.owl.model.OWLProperty
  Checks whether this is an object slot or a datatype slot.
isOntologyNameEditable(Instance) - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.OntologyURIWidget
isOverwriteMode() - Method in class edu.stanford.smi.protegex.owl.ui.menu.code.EMFPanel
isOverwriteMode() - Method in class edu.stanford.smi.protegex.owl.ui.menu.code.KazukiPanel
isOWLClass(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
isOWLClass(OWLModel, URI) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
isOWLDataProperty(OWLModel, String, boolean) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
isOWLDataProperty(OWLModel, URI, boolean) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
isOWLDataProperty(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
isOWLDataProperty(OWLModel, URI) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
isOWLDatatype(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
isOWLDatatype(OWLModel, URI) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
isOWLDirectSubClassOf(OWLModel, String, String, boolean) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
isOWLDirectSubClassOf(OWLModel, URI, URI, boolean) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
isOWLDirectSubPropertyOf(OWLModel, String, String, boolean) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
isOWLDirectSubPropertyOf(OWLModel, URI, URI, boolean) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
isOWLDirectSuperClassOf(OWLModel, String, String, boolean) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
isOWLDirectSuperClassOf(OWLModel, URI, URI, boolean) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
isOWLDirectSuperPropertyOf(OWLModel, String, String, boolean) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
isOWLDirectSuperPropertyOf(OWLModel, URI, URI, boolean) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
isOWLDisjointClass(OWLModel, String, String, boolean) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
isOWLDLTest(Class) - Static method in class edu.stanford.smi.protegex.owl.testing.OWLTestLibrary
isOWLEquivalentClass(OWLModel, String, String, boolean) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
isOWLEquivalentProperty(OWLModel, String, String, boolean) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
isOWLFunctionalProperty(OWLModel, String, boolean) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
isOWLFunctionalProperty(OWLModel, URI, boolean) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
isOWLIndividual(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
isOWLIndividual(OWLModel, URI) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
isOWLIndividualOfClass(OWLModel, OWLIndividual, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
isOWLIndividualOfDirectTypeOWLThing(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
isOWLIndividualOfType(OWLModel, URI, URI) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
isOWLIndividualOfType(OWLModel, String, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
isOWLIndividualOfType(OWLModel, String, OWLNamedClass) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
isOWLNamedClass(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
isOWLNamedClass(OWLModel, URI) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
isOWLNamedClass(OWLModel, String, boolean) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
isOWLNamedEntity(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
isOWLObjectProperty(OWLModel, String, boolean) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
isOWLObjectProperty(OWLModel, URI, boolean) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
isOWLObjectProperty(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
isOWLObjectProperty(OWLModel, URI) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
isOWLProperty(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
isOWLProperty(OWLModel, String, boolean) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
isOWLProperty(OWLModel, URI, boolean) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
isOWLSubClassOf(OWLModel, String, String, boolean) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
isOWLSubClassOf(OWLClass, OWLClass) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
isOWLSubClassOf(OWLModel, URI, URI, boolean) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
isOWLSubPropertyOf(OWLModel, String, String, boolean) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
isOWLSubPropertyOf(OWLModel, URI, URI, boolean) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
isOWLSuperClassOf(OWLModel, String, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
isOWLSuperClassOf(OWLModel, String, String, boolean) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
isOWLSuperClassOf(OWLModel, URI, URI, boolean) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
isOWLSuperPropertyOf(OWLModel, String, String, boolean) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
isOWLSuperPropertyOf(OWLModel, URI, URI, boolean) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
isOWLSymmetricProperty(OWLModel, String, boolean) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
isOWLSymmetricProperty(OWLModel, URI, boolean) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
isOWLSystemFrame(Frame) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
  Deprecated.
isOWLSystemFrame(Frame) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Deprecated.
isOWLTestGroupEnabled(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
isOWLTestGroupEnabled(String) - Method in interface edu.stanford.smi.protegex.owl.testing.OWLTestManager
isOWLTransitiveProperty(OWLModel, String, boolean) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
isOWLTransitiveProperty(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
isOWLTransitiveProperty(OWLModel, URI) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
isPossibleToCancel() - Method in class edu.stanford.smi.protegex.owl.model.AbstractTask
isPossibleToCancel() - Method in interface edu.stanford.smi.protegex.owl.model.Task
  Determines if the task can be cancelled
isPossibleToImport() - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.imports.wizard.FileImportEntry
isPossibleToImport() - Method in interface edu.stanford.smi.protegex.owl.ui.metadatatab.imports.wizard.ImportEntry
isPossibleToImport() - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.imports.wizard.RepositoryImportEntry
isPossibleToImport() - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.imports.wizard.URLImportEntry
isPossiblyValidOntology() - Method in class edu.stanford.smi.protegex.owl.repository.util.OntologyNameExtractor
isPreferredWidget(RDFSNamedClass, RDFProperty) - Method in class edu.stanford.smi.protegex.owl.ui.widget.MultiLiteralWidgetMetadata
isPreferredWidget(RDFSNamedClass, RDFProperty) - Method in class edu.stanford.smi.protegex.owl.ui.widget.OWLDateTimeWidgetMetadata
isPreferredWidget(RDFSNamedClass, RDFProperty) - Method in class edu.stanford.smi.protegex.owl.ui.widget.OWLDateWidgetMetadata
isPreferredWidget(RDFSNamedClass, RDFProperty) - Method in class edu.stanford.smi.protegex.owl.ui.widget.OWLTimeWidgetMetadata
isPreferredWidget(RDFSNamedClass, RDFProperty) - Method in class edu.stanford.smi.protegex.owl.ui.widget.SingleLiteralWidgetMetadata
isPrimitive() - Method in class edu.stanford.smi.protegex.owl.javacode.RDFPropertyAtClassCode
isProbeClass() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLNamedClass
isProbeClass() - Method in interface edu.stanford.smi.protegex.owl.model.OWLNamedClass
  Checks if this has been marked as a probe class, using the protege:probeClass annotation property.
isProgressIndeterminate() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.AbstractReasonerTask
isProgressIndeterminate() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.AbstractReasonerTask
isProgressIndeterminate() - Method in interface edu.stanford.smi.protegex.owl.inference.protegeowl.task.ReasonerTask
  Determines whether the task can determine its overall progress.
isProseActivated() - Method in class edu.stanford.smi.protegex.owl.ui.menu.OWLMenuProjectPlugin
isProtegeMetaOntologyImported() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
isProtegeMetaOntologyImported() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
isPureAnnotationProperty() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
isPureAnnotationProperty() - Method in interface edu.stanford.smi.protegex.owl.model.RDFProperty
  Checks whether this property is a real annotation property.
isQualified() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLCardinalityBase
isQualified() - Method in interface edu.stanford.smi.protegex.owl.model.OWLCardinalityBase
  Checks if this is a qualified cardinality restriction.
isRangeDefined() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
isRangeDefined() - Method in interface edu.stanford.smi.protegex.owl.model.RDFProperty
  Checks whether this property defines its own range.
isRangeDefined(RDFResource, RDFProperty) - Static method in class edu.stanford.smi.protegex.owl.ui.components.ComponentUtil
isRangelessDatatypeProperty(RDFSNamedClass, RDFProperty) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.OWLWidgetUtil
isRangelessObjectProperty(RDFSNamedClass, RDFProperty) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.OWLWidgetUtil
isRawValue(String) - Static method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFSLiteral
isRDFResource(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
isRDFResource(OWLModel, URI) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
isRDFResource(int) - Method in class edu.stanford.smi.protegex.owl.ui.components.multiresource.MultiResourceListModel
isReadOnly() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
isReadOnly() - Method in interface edu.stanford.smi.protegex.owl.model.RDFProperty
  Checks if the values of this slot should be treated as read-only.
isReadOnly() - Method in class edu.stanford.smi.protegex.owl.ui.components.AbstractPropertyValuesComponent
isReallyAncientVersion(PropertyList) - Static method in class edu.stanford.smi.protegex.owl.ui.menu.OWLBackwardsCompatibilityProjectFixups
isRecursive() - Method in class edu.stanford.smi.protegex.owl.ui.repository.wizard.impl.FileBrowserPanel
isRelevantProperty(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.ui.components.annotations.AnnotationsTableModel
isRelevantProperty(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.ui.components.triples.TriplesTableModel
isRemoveEnabled() - Method in class edu.stanford.smi.protegex.owl.ui.components.multiresource.MultiResourceList
isRemoveEnabled(int) - Method in class edu.stanford.smi.protegex.owl.ui.components.multiresource.MultiResourceList
isRemoveEnabled() - Method in class edu.stanford.smi.protegex.owl.ui.components.rdflist.RDFListComponent
isRemoveEnabled() - Method in class edu.stanford.smi.protegex.owl.ui.components.singleresource.SingleResourceComponent
isRemoveEnabledFor(Cls) - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.DisjointClassesTableModel
isRemoveEnabledFor(Cls) - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.PropertiesDefinitionTableModel
isRemoveEnabledFor(Cls) - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.PropertiesSuperclassesTableModel
isRemoveEnabledFor(int) - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTableModel
isRenderable(RDFResource) - Method in class edu.stanford.smi.protegex.owl.writer.rdfxml.renderer.RDFAxiomRenderer.RenderableAxiomsChecker
isReplaceableBy(ResultsPanel) - Method in class edu.stanford.smi.protegex.owl.inference.ui.ReasonerWarningPanel
isReplaceableBy(ResultsPanel) - Method in class edu.stanford.smi.protegex.owl.ui.results.ResultsPanel
isRequestAbort() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.AbstractReasonerTask
isRequestAbort() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.AbstractReasonerTask
isRequestAbort() - Method in interface edu.stanford.smi.protegex.owl.inference.protegeowl.task.ReasonerTask
isRestrictedProperty(RDFSNamedClass, RDFProperty) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.OWLWidgetUtil
isRoot() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeCls
  Deprecated. not needed
isSatisfiable(OWLClass, ReasonerTaskListener) - Method in class edu.stanford.smi.protegex.owl.inference.dig.DefaultProtegeDIGReasoner
isSatisfiable(OWLClass) - Method in class edu.stanford.smi.protegex.owl.inference.dig.DefaultProtegeDIGReasoner
isSatisfiable(OWLClass, ReasonerTaskListener) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.DefaultProtegeOWLReasoner
isSatisfiable(OWLClass, ReasonerTaskListener) - Method in interface edu.stanford.smi.protegex.owl.inference.protegeowl.ProtegeOWLReasoner
  Deprecated. This method queries the reasoner to determine if the specified concept is satisfiable.
isSatisfiable(OWLClass) - Method in class edu.stanford.smi.protegex.owl.inference.reasoner.AbstractProtegeReasoner
isSatisfiable(OWLClass) - Method in interface edu.stanford.smi.protegex.owl.inference.reasoner.ProtegeReasoner
  This method queries the reasoner to determine if the specified concept is satisfiable.
isSeparator() - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTableItem
isSeparator(int) - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTableModel
isSeparator(int) - Method in class edu.stanford.smi.protegex.owl.ui.testing.OWLTestSettingsTableModel
isSetEnabled() - Method in class edu.stanford.smi.protegex.owl.ui.components.singleresource.SingleResourceComponent
isShowReasonerResultsPanel() - Method in class edu.stanford.smi.protegex.owl.inference.util.ReasonerPreferences
isShowWarningResultsPanel() - Method in class edu.stanford.smi.protegex.owl.inference.util.ReasonerPreferences
isSingleDatatypeProperty(RDFSDatatype, RDFSNamedClass, RDFProperty) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.OWLWidgetUtil
isSlotMetaCls(Cls) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
isSlotMetaCls() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeCls
  Deprecated. not needed
isSlotMetaCls(Cls) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not needed
isSortableColumn(int) - Method in class edu.stanford.smi.protegex.owl.ui.matrix.MatrixTableModel
isSortAlphabetically() - Method in class edu.stanford.smi.protegex.owl.writer.rdfxml.util.ProtegeWriterSettings
isSQWRLBuiltIn(String) - Static method in class edu.stanford.smi.protegex.owl.swrl.model.SQWRLNames
isSQWRLCollectionCreateOperationBuiltIn(String) - Static method in class edu.stanford.smi.protegex.owl.swrl.model.SQWRLNames
isSQWRLCollectionGroupByBuiltIn(String) - Static method in class edu.stanford.smi.protegex.owl.swrl.model.SQWRLNames
isSQWRLCollectionMakeBuiltIn(String) - Static method in class edu.stanford.smi.protegex.owl.swrl.model.SQWRLNames
isSQWRLCollectionOperationBuiltIn(String) - Static method in class edu.stanford.smi.protegex.owl.swrl.model.SQWRLNames
isSQWRLHeadAggregationBuiltIn(String) - Static method in class edu.stanford.smi.protegex.owl.swrl.model.SQWRLNames
isSQWRLHeadBuiltIn(String) - Static method in class edu.stanford.smi.protegex.owl.swrl.model.SQWRLNames
isSQWRLHeadSelectionBuiltIn(String) - Static method in class edu.stanford.smi.protegex.owl.swrl.model.SQWRLNames
isSQWRLHeadSlicingBuiltIn(String) - Static method in class edu.stanford.smi.protegex.owl.swrl.model.SQWRLNames
isStringAlias(String) - Static method in class edu.stanford.smi.protegex.owl.model.impl.XMLSchemaDatatypes
isStringProperty() - Method in class edu.stanford.smi.protegex.owl.ui.components.literaltable.LiteralTableModel
isSubclassOf(RDFSClass) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
isSubclassOf(RDFSClass) - Method in interface edu.stanford.smi.protegex.owl.model.RDFSClass
  Checks whether this is a (direct) subclass of a given class.
isSubpropertyOf(RDFProperty, boolean) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
isSubpropertyOf(RDFProperty, boolean) - Method in interface edu.stanford.smi.protegex.owl.model.RDFProperty
  Checks if this is a subproperty of a given superproperty.
isSubsumedBy(OWLClass, OWLClass, ReasonerTaskListener) - Method in class edu.stanford.smi.protegex.owl.inference.dig.DefaultProtegeDIGReasoner
isSubsumedBy(OWLClass, OWLClass) - Method in class edu.stanford.smi.protegex.owl.inference.dig.DefaultProtegeDIGReasoner
isSubsumedBy(OWLClass, OWLClass, ReasonerTaskListener) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.DefaultProtegeOWLReasoner
isSubsumedBy(OWLClass, OWLClass, ReasonerTaskListener) - Method in interface edu.stanford.smi.protegex.owl.inference.protegeowl.ProtegeOWLReasoner
  Deprecated. Determines if one class (cls1) is subsumed by another class (cls2).
isSubsumedBy(OWLClass, OWLClass) - Method in class edu.stanford.smi.protegex.owl.inference.reasoner.AbstractProtegeReasoner
isSubsumedBy(OWLClass, OWLClass) - Method in interface edu.stanford.smi.protegex.owl.inference.reasoner.ProtegeReasoner
  Determines if one class (cls1) is subsumed by another class (cls2).
IsSubsumedByTask - Class in edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Sep 12, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
IsSubsumedByTask(ProtegeOWLReasoner, OWLClass, OWLClass) - Constructor for class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.IsSubsumedByTask
IsSubsumedByTask - Class in edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Sep 12, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
IsSubsumedByTask(ProtegeReasoner, OWLClass, OWLClass) - Constructor for class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.IsSubsumedByTask
isSufficientlyExpressive(RDFSNamedClass) - Method in class edu.stanford.smi.protegex.owl.ui.classform.form.ClassFormSwitchableType
isSufficientlyExpressive(RDFSNamedClass) - Method in class edu.stanford.smi.protegex.owl.ui.cls.LogicClassDefinitionWidgetType
  Indicates that this type can display all classes.
isSufficientlyExpressive(RDFSNamedClass) - Method in class edu.stanford.smi.protegex.owl.ui.cls.PropertiesClassDefinitionWidgetType
isSufficientlyExpressive(RDFSNamedClass) - Method in interface edu.stanford.smi.protegex.owl.ui.cls.SwitchableType
  Checks if this type would be able to display a given class.
isSuitable(Component, RDFResource) - Method in class edu.stanford.smi.protegex.owl.inference.ui.action.CheckSingleConceptConsistencyAction
isSuitable(Component, RDFResource) - Method in class edu.stanford.smi.protegex.owl.inference.ui.action.ComputeIndividualsBelongingToClassAction
isSuitable(Component, RDFResource) - Method in class edu.stanford.smi.protegex.owl.inference.ui.action.ComputeSingleIndividualTypesAction
isSuitable(Component, RDFResource) - Method in class edu.stanford.smi.protegex.owl.inference.ui.action.GetInferredSubClassesAction
isSuitable(Component, RDFResource) - Method in class edu.stanford.smi.protegex.owl.inference.ui.action.GetInferredSuperClassesAction
isSuitable(Component, RDFResource) - Method in class edu.stanford.smi.protegex.owl.inference.ui.action.GetSingleIndividualPropertyValuesAction
isSuitable(Component, RDFResource) - Method in class edu.stanford.smi.protegex.owl.javacode.JavaCodeGeneratorResourceAction
isSuitable(OWLModel, String) - Method in interface edu.stanford.smi.protegex.owl.repository.factory.RepositoryFactoryPlugin
  Determines if this plugin can create the appropriate repository from the specified `String`.
isSuitable(OWLModel, String) - Method in class edu.stanford.smi.protegex.owl.repository.impl.DatabaseRepositoryFactoryPlugin
isSuitable(OWLModel, String) - Method in class edu.stanford.smi.protegex.owl.repository.impl.DublinCoreDLVersionRedirectRepositoryFactoryPlugin
isSuitable(OWLModel, String) - Method in class edu.stanford.smi.protegex.owl.repository.impl.FTPRepositoryFactoryPlugin
isSuitable(OWLModel, String) - Method in class edu.stanford.smi.protegex.owl.repository.impl.HTTPRepositoryFactoryPlugin
isSuitable(OWLModel, String) - Method in class edu.stanford.smi.protegex.owl.repository.impl.LocalFileRepositoryFactoryPlugin
isSuitable(OWLModel, String) - Method in class edu.stanford.smi.protegex.owl.repository.impl.LocalFolderRepositoryFactoryPlugin
isSuitable(OWLModel, String) - Method in class edu.stanford.smi.protegex.owl.repository.impl.RelativeFileRepositoryFactoryPlugin
isSuitable(OWLModel, String) - Method in class edu.stanford.smi.protegex.owl.repository.impl.RelativeFolderRepositoryFactoryPlugin
isSuitable(Component, RDFResource) - Method in class edu.stanford.smi.protegex.owl.swrl.ui.actions.EditRuleAction
isSuitable(OWLModel) - Method in class edu.stanford.smi.protegex.owl.swrl.ui.actions.EnableSWRLTabAction
isSuitable(Project, Collection<Object>) - Static method in class edu.stanford.smi.protegex.owl.swrl.ui.tab.SWRLTab
isSuitable(Cls, Slot, Facet) - Static method in class edu.stanford.smi.protegex.owl.swrl.ui.widget.SWRLRuleSlotWidget
isSuitable(OWLModel) - Method in class edu.stanford.smi.protegex.owl.ui.actions.AbstractOWLModelAction
isSuitable(Component, RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.actions.AddRDFTypeAction
isSuitable(Component, RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.actions.CollapseTreeAction
isSuitable(Component, RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.actions.ConvertIndividualToClassAction
isSuitable(Component, RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.actions.DeletePropertyAction
isSuitable(Component, RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.actions.ExpandTreeAction
isSuitable(OWLModel) - Method in interface edu.stanford.smi.protegex.owl.ui.actions.OWLModelAction
  Determines whether this action shall be used for the given OWLModel.
isSuitable(Component, RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.actions.RemoveRDFTypeAction
isSuitable(Component, RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.actions.ResourceAction
isSuitable(Component, RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.actions.SetSubclassesDisjointFalseAction
isSuitable(Component, RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.actions.SetSubclassesDisjointTrueAction
isSuitable(Triple) - Method in class edu.stanford.smi.protegex.owl.ui.actions.triple.DeleteTripleAction
isSuitable(RDFResource, RDFProperty, Object) - Static method in class edu.stanford.smi.protegex.owl.ui.actions.triple.DeleteTripleAction
isSuitable(Triple) - Method in interface edu.stanford.smi.protegex.owl.ui.actions.triple.TripleAction
  Tests if this action can be applied to a given Triple.
isSuitable(OWLModel) - Method in class edu.stanford.smi.protegex.owl.ui.classform.form.ClassFormSwitchableType
isSuitable(Component, RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.cls.AddSubclassAction
isSuitable(Component, RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.cls.ChangeMetaclassAction
isSuitable(Component, RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.cls.ChangeMetaclassOfSubclassesAction
isSuitable(Cls, Slot, Facet) - Static method in class edu.stanford.smi.protegex.owl.ui.cls.ClassAnnotationsAndDescriptionWidget
isSuitable(Cls, Slot, Facet) - Static method in class edu.stanford.smi.protegex.owl.ui.cls.ClassTypeConverterWidget
isSuitable(Component, RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.cls.ConvertToDefinedClassAction
isSuitable(Component, RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.cls.ConvertToPrimitiveClassAction
isSuitable(Component, RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.cls.CreateClassUsingMetaclassAction
isSuitable(Component, RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.cls.CreateCloneAction
isSuitable(Component, RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.cls.CreateRDFListResourceAction
isSuitable(Component, RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.cls.CreateSiblingClassAction
isSuitable(Component, RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.cls.CreateSubclassAction
isSuitable(Component, RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.cls.DeleteClassAction
isSuitable(Component, RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.cls.ExtractOntologyAction
isSuitable(Component, RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.cls.ExtractTaxonomyAction
isSuitable(Component, RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.cls.HideClassAction
isSuitable(OWLModel) - Method in class edu.stanford.smi.protegex.owl.ui.cls.LogicClassDefinitionWidgetType
isSuitable(Project, Collection) - Static method in class edu.stanford.smi.protegex.owl.ui.cls.OWLClassesTab
isSuitable(OWLModel) - Method in class edu.stanford.smi.protegex.owl.ui.cls.PropertiesClassDefinitionWidgetType
isSuitable(Component, RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.cls.SortSubclassesAction
isSuitable(Component, RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.cls.SortSubclassesTreeAction
isSuitable(Cls, Slot, Facet) - Static method in class edu.stanford.smi.protegex.owl.ui.cls.SwitchableClassDefinitionWidget
isSuitable(OWLModel) - Method in interface edu.stanford.smi.protegex.owl.ui.cls.SwitchableType
isSuitable(Component, RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.cls.UnhideClassAction
isSuitable(Cls, Slot, Facet) - Static method in class edu.stanford.smi.protegex.owl.ui.clsdesc.DisjointClassesWidget
isSuitable(Cls) - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.PropertiesDefinitionTableModel
isSuitable(Cls) - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.PropertiesSuperclassesTableModel
isSuitable(Cls, Slot, Facet) - Static method in class edu.stanford.smi.protegex.owl.ui.clsproperties.PropertyRestrictionsTreeWidget
isSuitable(Component, RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.conditions.AddClosureAxiomAction
isSuitable(Frame, OWLNamedClass) - Static method in class edu.stanford.smi.protegex.owl.ui.conditions.AddClosureAxiomAction
isSuitable(Component, RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.conditions.AddCoveringAxiomAction
isSuitable(Cls, Slot, Facet) - Static method in class edu.stanford.smi.protegex.owl.ui.conditions.AssertedConditionsWidget
isSuitable(Cls, Slot, Facet) - Static method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsWidget
isSuitable(Cls, Slot, Facet) - Static method in class edu.stanford.smi.protegex.owl.ui.conditions.InferredConditionsWidget
isSuitable(Component, RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.explorer.ExplorerAction
isSuitable(Project, Collection) - Static method in class edu.stanford.smi.protegex.owl.ui.individuals.OWLIndividualsTab
isSuitable(Component, RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.matrix.cls.ExistentialMatrixAction
isSuitable(Component, RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.matrix.cls.SubclassesMatrixAction
isSuitable(RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.matrix.cls.SubclassesMatrixFilter
isSuitable(RDFResource) - Method in interface edu.stanford.smi.protegex.owl.ui.matrix.MatrixFilter
  Checks whether a given Frame meets the requirements of this filter.
isSuitable(Component, RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.matrix.property.SubpropertiesMatrixAction
isSuitable(OWLModel) - Method in class edu.stanford.smi.protegex.owl.ui.menu.code.SourceCodeAction
isSuitable(KnowledgeBase, Collection) - Static method in class edu.stanford.smi.protegex.owl.ui.menu.OWLBackwardsCompatibilityProjectFixups
isSuitable(Cls, Slot, Facet) - Static method in class edu.stanford.smi.protegex.owl.ui.metadata.AnnotationsWidget
isSuitable(Cls, Slot, Facet) - Static method in class edu.stanford.smi.protegex.owl.ui.metadata.AnnotationTextAreaWidget
isSuitable(Cls, Slot, Facet) - Static method in class edu.stanford.smi.protegex.owl.ui.metadata.NameDocumentationWidget
  Deprecated.
isSuitable(Cls, Slot, Facet) - Static method in class edu.stanford.smi.protegex.owl.ui.metadata.OWLMetadataWidget
  Deprecated.
isSuitable(Cls, Slot, Facet) - Static method in class edu.stanford.smi.protegex.owl.ui.metadatatab.alldifferent.AllDifferentWidget
isSuitable(Cls, Slot, Facet) - Static method in class edu.stanford.smi.protegex.owl.ui.metadatatab.OntologyURIWidget
isSuitable(Project, Collection) - Static method in class edu.stanford.smi.protegex.owl.ui.metadatatab.OWLMetadataTab
isSuitable(Cls, Slot, Facet) - Static method in class edu.stanford.smi.protegex.owl.ui.metadatatab.OWLNamespacesWidget
isSuitable(Cls) - Method in class edu.stanford.smi.protegex.owl.ui.owltable.AbstractOWLTableModel
  Checks whether a given superclass shall be displayed or not.
isSuitable(Component, RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.properties.actions.ChangePropertyTypeAction
isSuitable(Component, RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.properties.actions.ConvertToDatatypePropertyAction
isSuitable(Component, RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.properties.actions.ConvertToObjectPropertyAction
isSuitable(Component, RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.properties.actions.CreateSubpropertyAction
isSuitable(Cls, Slot, Facet) - Static method in class edu.stanford.smi.protegex.owl.ui.properties.domain.OWLDomainWidget
isSuitable(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.ui.properties.OWLAnnotationPropertySubpropertyRoot
isSuitable(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.ui.properties.OWLDatatypePropertySubpropertyRoot
isSuitable(Cls, Slot, Facet) - Static method in class edu.stanford.smi.protegex.owl.ui.properties.OWLInversePropertyWidget
isSuitable(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.ui.properties.OWLObjectPropertySubpropertyRoot
isSuitable(Project, Collection) - Static method in class edu.stanford.smi.protegex.owl.ui.properties.OWLPropertiesTab
isSuitable(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.ui.properties.OWLPropertySubpropertyRoot
isSuitable(Cls, Slot, Facet) - Static method in class edu.stanford.smi.protegex.owl.ui.properties.range.OWLRangeWidget
isSuitable(Cls, Slot, Facet) - Static method in class edu.stanford.smi.protegex.owl.ui.properties.types.OWLDatatypePropertyTypesWidget
isSuitable(Cls, Slot, Facet) - Static method in class edu.stanford.smi.protegex.owl.ui.properties.types.OWLObjectPropertyTypesWidget
isSuitable(Cls, Slot, Facet) - Static method in class edu.stanford.smi.protegex.owl.ui.properties.types.RDFPropertyTypesWidget
isSuitable(Triple) - Method in class edu.stanford.smi.protegex.owl.ui.query.QueryTripleAction
isSuitable(OWLModel) - Method in class edu.stanford.smi.protegex.owl.ui.query.SPARQLOWLModelAction
isSuitable(Component, RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.refactoring.RenameAcrossFilesAction
isSuitable(Component, RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.refactoring.SetDeprecatedFalseAction
isSuitable(Component, RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.refactoring.SetDeprecatedTrueAction
isSuitable(Repository, OWLModel) - Method in interface edu.stanford.smi.protegex.owl.ui.repository.action.RepositoryAction
isSuitable(OWLModel) - Method in class edu.stanford.smi.protegex.owl.ui.repository.wizard.impl.DatabaseRepositoryCreatorWizardPlugin
isSuitable(OWLModel) - Method in class edu.stanford.smi.protegex.owl.ui.repository.wizard.impl.HTTPRepositoryCreatorWizardPlugin
isSuitable(OWLModel) - Method in class edu.stanford.smi.protegex.owl.ui.repository.wizard.impl.LocalFileRepositoryCreatorWizardPlugin
isSuitable(OWLModel) - Method in class edu.stanford.smi.protegex.owl.ui.repository.wizard.impl.LocalFolderRepositoryCreatorWizardPlugin
isSuitable(OWLModel) - Method in class edu.stanford.smi.protegex.owl.ui.repository.wizard.impl.RelativeFileRepositoryCreatorWizardPlugin
isSuitable(OWLModel) - Method in class edu.stanford.smi.protegex.owl.ui.repository.wizard.impl.RelativeFolderRepositoryCreatorWizardPlugin
isSuitable(OWLModel) - Method in interface edu.stanford.smi.protegex.owl.ui.repository.wizard.RepositoryCreatorWizardPlugin
isSuitable(Component, RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.search.SearchNamedClassAction
isSuitable(OWLModel) - Method in class edu.stanford.smi.protegex.owl.ui.testing.AbstractOWLModelTestAction
isSuitable(Cls, Slot, Facet) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.ClassFormWidget
isSuitable(Cls, Slot, Facet) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.DataRangeFieldWidget
isSuitable(Cls, Slot, Facet) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.ExternalResourceURLWidget
isSuitable(Cls, Slot, Facet) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.HeaderWidget
isSuitable(Cls, Slot, Facet) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.InferredSuperClassesWidget
  This is just tentative.
isSuitable(Cls, Slot, Facet) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.MultiLiteralWidget
  Deprecated.
isSuitable(Cls, Slot, Facet) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.MultiResourceWidget
isSuitable(Cls, Slot, Facet) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.OWLDateTimeWidget
  Deprecated.
isSuitable(Cls, Slot, Facet) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.OWLDateWidget
  Deprecated.
isSuitable(WidgetDescriptor, Cls, Slot) - Method in class edu.stanford.smi.protegex.owl.ui.widget.OWLFormWidget
isSuitable(Cls, Slot, Facet) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.OWLTimeWidget
  Deprecated.
isSuitable(Class, Cls, Slot) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.OWLWidgetMapper
isSuitable(Cls, Slot, Facet) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.RDFListWidget
isSuitable(Cls, Slot, Facet) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.RDFPropertiesWidget
isSuitable(Cls, Slot, Facet) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.RDFSSubClassOfWidget
isSuitable(Cls, Slot, Facet) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.SingleLiteralAreaWidget
  Deprecated.
isSuitable(Cls, Slot, Facet) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.SingleLiteralWidget
  Deprecated.
isSuitable(Cls, Slot, Facet) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.SingleResourceWidget
isSuitableWidget(RDFSNamedClass, RDFProperty) - Method in class edu.stanford.smi.protegex.owl.ui.widget.MultiLiteralWidgetMetadata
isSuitableWidget(RDFSNamedClass, RDFProperty) - Method in class edu.stanford.smi.protegex.owl.ui.widget.OWLDateTimeWidgetMetadata
isSuitableWidget(RDFSNamedClass, RDFProperty) - Method in class edu.stanford.smi.protegex.owl.ui.widget.OWLDateWidgetMetadata
isSuitableWidget(RDFSNamedClass, RDFProperty) - Method in class edu.stanford.smi.protegex.owl.ui.widget.OWLTimeWidgetMetadata
isSuitableWidget(RDFSNamedClass, RDFProperty) - Method in class edu.stanford.smi.protegex.owl.ui.widget.RDFListWidgetMetadata
isSuitableWidget(RDFSNamedClass, RDFProperty) - Method in class edu.stanford.smi.protegex.owl.ui.widget.SingleLiteralWidgetMetadata
isSupported(RDFSDatatype) - Method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DIGDataTypes
  Determines whether or not the datatype that is represented by the Protege ValueType is supported
isSupported(RDFSLiteral) - Method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DIGDataTypes
  Dermines if the object is of a supported datatype.
isSupportedAskElement(String) - Method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DefaultDIGRenderer
isSupportedLanguageElement(String) - Method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DefaultDIGRenderer
isSupportedTellElement(String) - Method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DefaultDIGRenderer
isSuppressedType(Cls, Instance) - Method in class edu.stanford.smi.protegex.owl.ui.resourcedisplay.ResourceDisplay
isSuppressedType(Cls) - Method in class edu.stanford.smi.protegex.owl.ui.resourcedisplay.ResourceDisplay
isSWRLBuiltIn(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
isSWRLFilteredResource(RDFResource) - Static method in class edu.stanford.smi.protegex.owl.swrl.model.SWRLFactory
isSWRLImported(Project) - Static method in class edu.stanford.smi.protegex.owl.swrl.ui.SWRLProjectPlugin
  Deprecated. always returns true - swrl is included in the system frames.
isSWRLPresent(Project) - Static method in class edu.stanford.smi.protegex.owl.swrl.ui.SWRLProjectPlugin
isSWRLPresent(OWLModel) - Static method in class edu.stanford.smi.protegex.owl.swrl.ui.SWRLProjectPlugin
isSWRLResource(RDFResource) - Static method in class edu.stanford.smi.protegex.owl.swrl.model.SWRLFactory
isSWRLVariable(OWLModel, String, boolean) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
isSymmetric() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLObjectProperty
isSymmetric() - Method in interface edu.stanford.smi.protegex.owl.model.OWLObjectProperty
isSynchronized() - Method in class edu.stanford.smi.protegex.owl.ui.cls.HierarchyPanel
isSynchronized() - Method in class edu.stanford.smi.protegex.owl.ui.cls.SecondaryHierarchyPanel
isSystem(Frame) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
isSystem() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeInstance
isSystem() - Method in class edu.stanford.smi.protegex.owl.repository.impl.AbstractLocalRepository
isSystem() - Method in class edu.stanford.smi.protegex.owl.repository.impl.DatabaseRepository
isSystem() - Method in class edu.stanford.smi.protegex.owl.repository.impl.DublinCoreDLVersionRedirectRepository
isSystem() - Method in class edu.stanford.smi.protegex.owl.repository.impl.ForcedURLRetrievalRepository
isSystem() - Method in class edu.stanford.smi.protegex.owl.repository.impl.FTPRepository
isSystem() - Method in class edu.stanford.smi.protegex.owl.repository.impl.HTTPRepository
isSystem() - Method in class edu.stanford.smi.protegex.owl.repository.impl.ProtegeOWLPluginFolderRepository
isSystem() - Method in interface edu.stanford.smi.protegex.owl.repository.Repository
  Determines if the ontology repository is a system repository.
isSystemClass(OntClass) - Static method in class edu.stanford.smi.protegex.owl.jena.Jena
isSystemProperty(OntProperty) - Static method in class edu.stanford.smi.protegex.owl.jena.Jena
isSystemResource(Resource) - Static method in class edu.stanford.smi.protegex.owl.jena.Jena
isTableHeaderHidden() - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTable
isTableHeaderHidden() - Method in class edu.stanford.smi.protegex.owl.ui.owltable.SymbolTable
isTimeSlot(RDFProperty) - Static method in class edu.stanford.smi.protegex.owl.model.impl.XMLSchemaDatatypes
isTransitive() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLObjectProperty
isTransitive() - Method in interface edu.stanford.smi.protegex.owl.model.OWLObjectProperty
isTreatErrorsAsWarnings() - Method in class edu.stanford.smi.protegex.owl.inference.dig.reasoner.DIGReasonerPreferences
  Determines if DIG Errors should be regarded as warnings.
isTriplesDisplayed() - Method in class edu.stanford.smi.protegex.owl.ui.resourcedisplay.ResourceDisplay
isTrueInstance(Instance) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
isUnsuitableTab(String) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.OWLUI
isUntyped() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
isUntyped() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFSNamedClass
isUseNamespaceEntities() - Method in class edu.stanford.smi.protegex.owl.writer.xml.XMLWriterPreferences
isUserDefinedDatatypesSupported(OWLModel) - Static method in class edu.stanford.smi.protegex.owl.ui.menu.preferences.ProtegeSettingsPanel
isValidAlias(String, ValueType) - Static method in class edu.stanford.smi.protegex.owl.model.impl.XMLSchemaDatatypes
isValidChange(RDFSNamedClass, boolean) - Method in class edu.stanford.smi.protegex.owl.ui.properties.types.AbstractPropertyTypesWidget
isValidChild(RDFSClass, RDFSClass) - Method in interface edu.stanford.smi.protegex.owl.ui.explorer.ExplorerFilter
  Checks whether a given superclass (childClass) shall be be displayed as a child of a given subclass node (parentClass).
isValidChild(RDFSClass, RDFSClass) - Method in class edu.stanford.smi.protegex.owl.ui.explorer.filter.DefaultExplorerFilter
isValidChild(RDFSClass, RDFSClass) - Method in class edu.stanford.smi.protegex.owl.ui.explorer.filter.HiddenClassesFilter
isValidClassName(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
isValidFrameName(String, Frame) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
isValidFrameToSearch(Frame) - Method in class edu.stanford.smi.protegex.owl.ui.search.finder.BasicFind
  Only look at classes, properties and individuals
isValidFrameToSearch(Frame) - Method in class edu.stanford.smi.protegex.owl.ui.search.finder.DefaultClassFind
isValidFrameToSearch(Frame) - Method in class edu.stanford.smi.protegex.owl.ui.search.finder.DefaultIndividualFind
isValidFrameToSearch(Frame) - Method in class edu.stanford.smi.protegex.owl.ui.search.finder.DefaultPropertyFind
isValidFrameToSearch(Frame) - Method in class edu.stanford.smi.protegex.owl.ui.search.finder.HiddenClassFind
isValidFrameToSearch(Frame) - Method in class edu.stanford.smi.protegex.owl.ui.search.finder.ResultsViewModelFind
isValidName(String) - Method in class edu.stanford.smi.protegex.owl.ui.resourcedisplay.InstanceNameEditor
isValidNamespace(String) - Static method in class edu.stanford.smi.protegex.owl.jena.Jena
isValidOWLFrameName(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
isValidOWLFrameName(NamespaceManager, String) - Static method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
isValidOwnSlotValue(Slot, Object) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeInstance
  Deprecated. not needed
isValidOwnSlotValue(Frame, Slot, Object) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not supported in OWL
isValidPrefix(String) - Static method in class edu.stanford.smi.protegex.owl.model.impl.AbstractNamespaceManager
isValidPropertyValue(RDFResource, RDFProperty, Object) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
isValidPropertyValue(RDFProperty, Object) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
isValidPropertyValue(RDFProperty, Object) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFIndividual
isValidPropertyValue(RDFProperty, Object) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
isValidPropertyValue(RDFResource, RDFProperty, Object) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
isValidPropertyValue(RDFResource, RDFProperty, Object) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Checks if a certain object would be a valid value for a given subject/property pair.
isValidPropertyValue(RDFProperty, Object) - Method in interface edu.stanford.smi.protegex.owl.model.RDFResource
  A convenience method to access the corresponding method in OWLModel.
isValidPropertyValue(RDFResource, RDFProperty, Object) - Method in class edu.stanford.smi.protegex.owl.model.validator.DefaultPropertyValueValidator
isValidPropertyValue(RDFResource, RDFProperty, Object) - Method in interface edu.stanford.smi.protegex.owl.model.validator.PropertyValueValidator
isValidResourceName(String, RDFResource) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
isValidResourceName(String, RDFResource) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Checks whether a given String would be a valid name for a given resource.
isValidURI(String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
isValidValue(RDFSLiteral) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFSDatatype
isValidValue(RDFSLiteral) - Method in interface edu.stanford.smi.protegex.owl.model.RDFSDatatype
  Checks if a given would be a valid value for this property.
isVisible() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLAnonymousClass
isVisible() - Method in interface edu.stanford.smi.protegex.owl.model.RDFResource
  Checks whether this resource has been declared to be invisible in the user interface.
isVisible(String) - Static method in class edu.stanford.smi.protegex.owl.swrl.P3SWRLTabPluginManager
isVisible(Frame) - Static method in class edu.stanford.smi.protegex.owl.ui.code.OWLResourceNameMatcher
isVisibleFromOWLThing() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFSNamedClass
isVisibleFromOWLThing() - Method in interface edu.stanford.smi.protegex.owl.model.RDFSNamedClass
  Checks whether this and a path to the root class is visible.
isWarningAsErrors() - Method in class edu.stanford.smi.protegex.owl.inference.util.ReasonerPreferences
isWritable(URI) - Method in class edu.stanford.smi.protegex.owl.repository.impl.AbstractLocalRepository
isWritable(URI) - Method in class edu.stanford.smi.protegex.owl.repository.impl.DatabaseRepository
isWritable(URI) - Method in class edu.stanford.smi.protegex.owl.repository.impl.DublinCoreDLVersionRedirectRepository
isWritable(URI) - Method in class edu.stanford.smi.protegex.owl.repository.impl.ForcedURLRetrievalRepository
isWritable(URI) - Method in class edu.stanford.smi.protegex.owl.repository.impl.FTPRepository
isWritable(URI) - Method in class edu.stanford.smi.protegex.owl.repository.impl.HTTPRepository
isWritable(URI) - Method in class edu.stanford.smi.protegex.owl.repository.impl.ProtegeOWLPluginFolderRepository
isWritable(URI) - Method in interface edu.stanford.smi.protegex.owl.repository.Repository
  Determines if the specified ontology is writable.
isXMLLanguage(String) - Static method in class edu.stanford.smi.protegex.owl.jena.Jena
isXMLLiteralSlot(Slot) - Static method in class edu.stanford.smi.protegex.owl.model.impl.XMLSchemaDatatypes
isXMLSchemaSlot(RDFProperty, XSDDatatype) - Static method in class edu.stanford.smi.protegex.owl.model.impl.XMLSchemaDatatypes
isXMLTagHidden() - Static method in class edu.stanford.smi.protegex.owl.jena.Jena
items - Variable in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTableModel
  One Item object for each row
iteratorRemoveAllowed() - Method in class edu.stanford.smi.protegex.owl.jena.graph.ProtegeCapabilities
IVAL - Static variable in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGVocabulary.Language

## J

JAVA_CODE_GROUP - Static variable in interface edu.stanford.smi.protegex.owl.ui.actions.OWLModelActionConstants
JavaCharStream - Class in edu.stanford.smi.protegex.owl.model.classparser.compact
  An implementation of interface CharStream, where the stream is assumed to contain only ASCII characters (with java-like unicode escape processing).
JavaCharStream(Reader, int, int, int) - Constructor for class edu.stanford.smi.protegex.owl.model.classparser.compact.JavaCharStream
JavaCharStream(Reader, int, int) - Constructor for class edu.stanford.smi.protegex.owl.model.classparser.compact.JavaCharStream
JavaCharStream(Reader) - Constructor for class edu.stanford.smi.protegex.owl.model.classparser.compact.JavaCharStream
JavaCharStream(InputStream, String, int, int, int) - Constructor for class edu.stanford.smi.protegex.owl.model.classparser.compact.JavaCharStream
JavaCharStream(InputStream, int, int, int) - Constructor for class edu.stanford.smi.protegex.owl.model.classparser.compact.JavaCharStream
JavaCharStream(InputStream, String, int, int) - Constructor for class edu.stanford.smi.protegex.owl.model.classparser.compact.JavaCharStream
JavaCharStream(InputStream, int, int) - Constructor for class edu.stanford.smi.protegex.owl.model.classparser.compact.JavaCharStream
JavaCharStream(InputStream, String) - Constructor for class edu.stanford.smi.protegex.owl.model.classparser.compact.JavaCharStream
JavaCharStream(InputStream) - Constructor for class edu.stanford.smi.protegex.owl.model.classparser.compact.JavaCharStream
JavaCharStream - Class in edu.stanford.smi.protegex.owl.model.classparser.dl
  An implementation of interface CharStream, where the stream is assumed to contain only ASCII characters (with java-like unicode escape processing).
JavaCharStream(Reader, int, int, int) - Constructor for class edu.stanford.smi.protegex.owl.model.classparser.dl.JavaCharStream
JavaCharStream(Reader, int, int) - Constructor for class edu.stanford.smi.protegex.owl.model.classparser.dl.JavaCharStream
JavaCharStream(Reader) - Constructor for class edu.stanford.smi.protegex.owl.model.classparser.dl.JavaCharStream
JavaCharStream(InputStream, String, int, int, int) - Constructor for class edu.stanford.smi.protegex.owl.model.classparser.dl.JavaCharStream
JavaCharStream(InputStream, int, int, int) - Constructor for class edu.stanford.smi.protegex.owl.model.classparser.dl.JavaCharStream
JavaCharStream(InputStream, String, int, int) - Constructor for class edu.stanford.smi.protegex.owl.model.classparser.dl.JavaCharStream
JavaCharStream(InputStream, int, int) - Constructor for class edu.stanford.smi.protegex.owl.model.classparser.dl.JavaCharStream
JavaCharStream(InputStream, String) - Constructor for class edu.stanford.smi.protegex.owl.model.classparser.dl.JavaCharStream
JavaCharStream(InputStream) - Constructor for class edu.stanford.smi.protegex.owl.model.classparser.dl.JavaCharStream
JavaCharStream - Class in edu.stanford.smi.protegex.owl.model.classparser.manchester
  An implementation of interface CharStream, where the stream is assumed to contain only ASCII characters (with java-like unicode escape processing).
JavaCharStream(Reader, int, int, int) - Constructor for class edu.stanford.smi.protegex.owl.model.classparser.manchester.JavaCharStream
JavaCharStream(Reader, int, int) - Constructor for class edu.stanford.smi.protegex.owl.model.classparser.manchester.JavaCharStream
JavaCharStream(Reader) - Constructor for class edu.stanford.smi.protegex.owl.model.classparser.manchester.JavaCharStream
JavaCharStream(InputStream, String, int, int, int) - Constructor for class edu.stanford.smi.protegex.owl.model.classparser.manchester.JavaCharStream
JavaCharStream(InputStream, int, int, int) - Constructor for class edu.stanford.smi.protegex.owl.model.classparser.manchester.JavaCharStream
JavaCharStream(InputStream, String, int, int) - Constructor for class edu.stanford.smi.protegex.owl.model.classparser.manchester.JavaCharStream
JavaCharStream(InputStream, int, int) - Constructor for class edu.stanford.smi.protegex.owl.model.classparser.manchester.JavaCharStream
JavaCharStream(InputStream, String) - Constructor for class edu.stanford.smi.protegex.owl.model.classparser.manchester.JavaCharStream
JavaCharStream(InputStream) - Constructor for class edu.stanford.smi.protegex.owl.model.classparser.manchester.JavaCharStream
javaClassName - Static variable in class edu.stanford.smi.protegex.owl.ui.forms.ProtegeFormsNames
JavaCodeGenerator - Class in edu.stanford.smi.protegex.owl.javacode
  A class that can create Java interfaces in the Protege-OWL format from an OWL model.
JavaCodeGenerator(OWLModel, JavaCodeGeneratorOptions) - Constructor for class edu.stanford.smi.protegex.owl.javacode.JavaCodeGenerator
JavaCodeGeneratorAction - Class in edu.stanford.smi.protegex.owl.javacode
JavaCodeGeneratorAction() - Constructor for class edu.stanford.smi.protegex.owl.javacode.JavaCodeGeneratorAction
JavaCodeGeneratorOptions - Interface in edu.stanford.smi.protegex.owl.javacode
JavaCodeGeneratorPanel - Class in edu.stanford.smi.protegex.owl.javacode
JavaCodeGeneratorPanel(EditableJavaCodeGeneratorOptions) - Constructor for class edu.stanford.smi.protegex.owl.javacode.JavaCodeGeneratorPanel
JavaCodeGeneratorResourceAction - Class in edu.stanford.smi.protegex.owl.javacode
JavaCodeGeneratorResourceAction() - Constructor for class edu.stanford.smi.protegex.owl.javacode.JavaCodeGeneratorResourceAction
JavaDemoApplication - Class in edu.stanford.smi.protegex.owlx.examples.javaDemo
JavaDemoApplication() - Constructor for class edu.stanford.smi.protegex.owlx.examples.javaDemo.JavaDemoApplication
JavaDemoApplicationTest - Class in edu.stanford.smi.protegex.owlx.examples.javaDemo
JavaDemoApplicationTest() - Constructor for class edu.stanford.smi.protegex.owlx.examples.javaDemo.JavaDemoApplicationTest
Jena - Class in edu.stanford.smi.protegex.owl.jena
  A collection of static utility methods for Jena.
Jena() - Constructor for class edu.stanford.smi.protegex.owl.jena.Jena
Jena.ObjectMapper - Class in edu.stanford.smi.protegex.owl.jena
Jena.ObjectMapper() - Constructor for class edu.stanford.smi.protegex.owl.jena.Jena.ObjectMapper
JENA_ERROR_LEVEL_PROPERTY - Static variable in class edu.stanford.smi.protegex.owl.jena.parser.ProtegeOWLParser
JENA_SCHEMAGEN_FILE - Static variable in class edu.stanford.smi.protegex.owl.ui.jena.JenaSchemagenAction
JENA_SCHEMAGEN_PACKAGE - Static variable in class edu.stanford.smi.protegex.owl.ui.jena.JenaSchemagenAction
JENA_SYNCHRONIZED - Static variable in class edu.stanford.smi.protegex.owl.jena.JenaKnowledgeBaseFactory
JenaCreator - Class in edu.stanford.smi.protegex.owl.jena.creator
  A class that creates a Jena OntModel from a Protege OWL model.
JenaCreator(OWLModel, Collection, ProgressDisplay) - Constructor for class edu.stanford.smi.protegex.owl.jena.creator.JenaCreator
JenaCreator(OWLModel, boolean, Collection, ProgressDisplay) - Constructor for class edu.stanford.smi.protegex.owl.jena.creator.JenaCreator
JenaCreator(OWLModel, boolean, boolean, Collection, ProgressDisplay) - Constructor for class edu.stanford.smi.protegex.owl.jena.creator.JenaCreator
JenaDLConverter - Class in edu.stanford.smi.protegex.owl.jena
  A class that can convert a given OntModel into OWL DL.
JenaDLConverter(OntModel, NamespaceManager) - Constructor for class edu.stanford.smi.protegex.owl.jena.JenaDLConverter
  Constructs a new JenaDLConverter.
JenaExportPlugin - Class in edu.stanford.smi.protegex.owl.jena.export
JenaExportPlugin() - Constructor for class edu.stanford.smi.protegex.owl.jena.export.JenaExportPlugin
JenaFilePanel - Class in edu.stanford.smi.protegex.owl.jena
JenaFilePanel() - Constructor for class edu.stanford.smi.protegex.owl.jena.JenaFilePanel
JenaImportPlugin - Class in edu.stanford.smi.protegex.owl.jena.importer
JenaImportPlugin() - Constructor for class edu.stanford.smi.protegex.owl.jena.importer.JenaImportPlugin
JenaKnowledgeBaseFactory - Class in edu.stanford.smi.protegex.owl.jena
  A backend for OWL based on the Jena2 API.
JenaKnowledgeBaseFactory() - Constructor for class edu.stanford.smi.protegex.owl.jena.JenaKnowledgeBaseFactory
JenaKnowledgeBaseSourcesEditor - Class in edu.stanford.smi.protegex.owl.jena
  The KnowledgeBaseSourcesEditor for the JenaKnowledgeBaseFactory.
JenaKnowledgeBaseSourcesEditor(String, PropertyList) - Constructor for class edu.stanford.smi.protegex.owl.jena.JenaKnowledgeBaseSourcesEditor
JenaMemoryTripleWriter - Class in edu.stanford.smi.protegex.owl.jena.triplestore
  A TripleWriter that writes into a given OntModel, which is then written to a file when done.
JenaMemoryTripleWriter() - Constructor for class edu.stanford.smi.protegex.owl.jena.triplestore.JenaMemoryTripleWriter
  Creates a JenaMemoryTripleWriter for in-memory use only.
JenaMemoryTripleWriter(OutputStream) - Constructor for class edu.stanford.smi.protegex.owl.jena.triplestore.JenaMemoryTripleWriter
JenaMemoryTripleWriter(OutputStream, OntModel) - Constructor for class edu.stanford.smi.protegex.owl.jena.triplestore.JenaMemoryTripleWriter
JenaModelFactory - Class in edu.stanford.smi.protegex.owl.jena.graph
  A totally experimental class to create a Jena Model for a given OWLModel.
JenaModelFactory() - Constructor for class edu.stanford.smi.protegex.owl.jena.graph.JenaModelFactory
JenaN3FileExportPlugin - Class in edu.stanford.smi.protegex.owl.jena.export
JenaN3FileExportPlugin() - Constructor for class edu.stanford.smi.protegex.owl.jena.export.JenaN3FileExportPlugin
JenaNormalizer - Class in edu.stanford.smi.protegex.owl.jena
  A class that is able to normalize a given OntModel.
JenaNormalizer(OntModel, Model, NamespaceManager) - Constructor for class edu.stanford.smi.protegex.owl.jena.JenaNormalizer
JenaNTripleFileExportPlugin - Class in edu.stanford.smi.protegex.owl.jena.export
JenaNTripleFileExportPlugin() - Constructor for class edu.stanford.smi.protegex.owl.jena.export.JenaNTripleFileExportPlugin
JenaOntModelExample - Class in edu.stanford.smi.protegex.owlx.examples
JenaOntModelExample() - Constructor for class edu.stanford.smi.protegex.owlx.examples.JenaOntModelExample
JenaOWLModel - Class in edu.stanford.smi.protegex.owl.jena
  An OWLModel that can be synchronized with a Jena OntModel.
JenaOWLModel(KnowledgeBaseFactory) - Constructor for class edu.stanford.smi.protegex.owl.jena.JenaOWLModel
JenaSchemagenAction - Class in edu.stanford.smi.protegex.owl.ui.jena
JenaSchemagenAction() - Constructor for class edu.stanford.smi.protegex.owl.ui.jena.JenaSchemagenAction
JenaSchemagenPanel - Class in edu.stanford.smi.protegex.owl.ui.jena
JenaSchemagenPanel() - Constructor for class edu.stanford.smi.protegex.owl.ui.jena.JenaSchemagenPanel
JenaTurtleFileExportPlugin - Class in edu.stanford.smi.protegex.owl.jena.export
JenaTurtleFileExportPlugin() - Constructor for class edu.stanford.smi.protegex.owl.jena.export.JenaTurtleFileExportPlugin
JenaWriterSettings - Class in edu.stanford.smi.protegex.owl.jena.writersettings
JenaWriterSettings(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.jena.writersettings.JenaWriterSettings
JessIcons - Class in edu.stanford.smi.protegex.owl.swrl.ui.icons
JessIcons() - Constructor for class edu.stanford.smi.protegex.owl.swrl.ui.icons.JessIcons
jj_nt - Variable in class edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxParser
jj_nt - Variable in class edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParser
jjFillToken() - Method in class edu.stanford.smi.protegex.owl.model.classparser.compact.CompactParserTokenManager
jjFillToken() - Method in class edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxParserTokenManager
jjFillToken() - Method in class edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParserTokenManager
jjnewLexState - Static variable in class edu.stanford.smi.protegex.owl.model.classparser.compact.CompactParserTokenManager
jjnewLexState - Static variable in class edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxParserTokenManager
jjstrLiteralImages - Static variable in class edu.stanford.smi.protegex.owl.model.classparser.compact.CompactParserTokenManager
jjstrLiteralImages - Static variable in class edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxParserTokenManager
jjstrLiteralImages - Static variable in class edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParserTokenManager
joinEncodedNamespaceEntry(String, String) - Static method in class edu.stanford.smi.protegex.owl.model.factory.FactoryUtils

## K

KAZUKI_JAVAC - Static variable in class edu.stanford.smi.protegex.owl.ui.menu.code.KazukiAction
KAZUKI_PACKAGE - Static variable in class edu.stanford.smi.protegex.owl.ui.menu.code.KazukiAction
KAZUKI_ROOT_FOLDER - Static variable in class edu.stanford.smi.protegex.owl.ui.menu.code.KazukiAction
KazukiAction - Class in edu.stanford.smi.protegex.owl.ui.menu.code
KazukiAction() - Constructor for class edu.stanford.smi.protegex.owl.ui.menu.code.KazukiAction
KazukiAction.VocabularyClassLoader - Class in edu.stanford.smi.protegex.owl.ui.menu.code
KazukiAction.VocabularyClassLoader(String) - Constructor for class edu.stanford.smi.protegex.owl.ui.menu.code.KazukiAction.VocabularyClassLoader
KazukiAction.VocabularyClassLoader(ClassLoader, String) - Constructor for class edu.stanford.smi.protegex.owl.ui.menu.code.KazukiAction.VocabularyClassLoader
KazukiPanel - Class in edu.stanford.smi.protegex.owl.ui.menu.code
KazukiPanel() - Constructor for class edu.stanford.smi.protegex.owl.ui.menu.code.KazukiPanel
KEY - Static variable in class edu.stanford.smi.protegex.owl.model.classdisplay.OWLClassDisplayFactory
keyPressed(KeyEvent) - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.manchester.ManchesterOWLTextPane
keyPressed(KeyEvent) - Method in class edu.stanford.smi.protegex.owl.ui.code.ExpansionKeyListener
keyPressed(KeyEvent) - Method in class edu.stanford.smi.protegex.owl.ui.code.SymbolTextArea
keyPressed(KeyEvent) - Method in class edu.stanford.smi.protegex.owl.ui.code.SymbolTextField
keyPressed(KeyEvent) - Method in class edu.stanford.smi.protegex.owl.ui.resourceselection.ResourceSelectionComboBox
keyReleased(KeyEvent) - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.manchester.ManchesterOWLTextPane
keyReleased(KeyEvent) - Method in class edu.stanford.smi.protegex.owl.ui.code.SymbolTextArea
keyReleased(KeyEvent) - Method in class edu.stanford.smi.protegex.owl.ui.code.SymbolTextField
keyReleased(KeyEvent) - Method in class edu.stanford.smi.protegex.owl.ui.resourceselection.ResourceSelectionComboBox
keyTyped(KeyEvent) - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.manchester.ManchesterOWLTextPane
keyTyped(KeyEvent) - Method in class edu.stanford.smi.protegex.owl.ui.code.SymbolTextArea
keyTyped(KeyEvent) - Method in class edu.stanford.smi.protegex.owl.ui.code.SymbolTextField
keyTyped(KeyEvent) - Method in class edu.stanford.smi.protegex.owl.ui.resourceselection.ResourceSelectionComboBox
kind - Variable in class edu.stanford.smi.protegex.owl.model.classparser.compact.Token
  An integer that describes the kind of this token.
kind - Variable in class edu.stanford.smi.protegex.owl.model.classparser.dl.Token
  An integer that describes the kind of this token.
kind - Variable in class edu.stanford.smi.protegex.owl.model.classparser.manchester.Token
  An integer that describes the kind of this token.
KnowledgeBaseCopier - Class in edu.stanford.smi.protegex.owl.storage
  A utility class that copies all frames from a source KnowledgeBase into a target KnowledgeBase.
KnowledgeBaseCopier(KnowledgeBase, KnowledgeBase) - Constructor for class edu.stanford.smi.protegex.owl.storage.KnowledgeBaseCopier

## L

LABEL - Static variable in interface edu.stanford.smi.protegex.owl.model.RDFSNames.Slot
LABEL - Static variable in class edu.stanford.smi.protegex.owl.ui.clsproperties.PropertyRestrictionsTreeWidget
labeledComponent - Variable in class edu.stanford.smi.protegex.owl.ui.cls.AssertedClassesPanel
LABELS - Static variable in interface edu.stanford.smi.protegex.owl.model.RDFSNames.Slot
  Deprecated. use LABEL
LANG - Static variable in class edu.stanford.smi.protegex.owl.ui.search.finder.FindResult
LANGUAGE_PREFIX - Static variable in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFSLiteral
Last - Static variable in class edu.stanford.smi.protegex.owl.swrl.model.SQWRLNames
LAST_CLASSIFICATION - Static variable in interface edu.stanford.smi.protegex.owl.ui.actions.OWLProperties
  Sets a String to store the (milliseconds, long) time of the most recent classification.
LastN - Static variable in class edu.stanford.smi.protegex.owl.swrl.model.SQWRLNames
LAYOUT_HORIZONTALLY - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
LAYOUT_VERTICALLY - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
layoutComponents(Box) - Method in class edu.stanford.smi.protegex.owl.database.OWLDatabaseWizardPage
layoutData - Static variable in class edu.stanford.smi.protegex.owl.ui.forms.FormsNames
LayoutData - Static variable in class edu.stanford.smi.protegex.owl.ui.forms.FormsNames
LayoutEngine - Interface in edu.stanford.smi.protegex.owl.ui.classform.form.layout
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Sep 19, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
LeafExplorerTreeNode - Class in edu.stanford.smi.protegex.owl.ui.explorer
LeafExplorerTreeNode(LazyTreeNode, RDFSClass, ExplorerFilter) - Constructor for class edu.stanford.smi.protegex.owl.ui.explorer.LeafExplorerTreeNode
Least - Static variable in class edu.stanford.smi.protegex.owl.swrl.model.SQWRLNames
LeastN - Static variable in class edu.stanford.smi.protegex.owl.swrl.model.SQWRLNames
LENGTH - Static variable in interface edu.stanford.smi.protegex.owl.model.XSDNames.Facet
LENGTH - Static variable in class edu.stanford.smi.protegex.owl.model.XSPNames
  Deprecated. use the helper method `XSPNames.get(int resourceID)`
LENGTH - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLConstants.BuiltIns
  Deprecated.
LESS_THAN - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLConstants.BuiltIns
  Deprecated.
LESS_THAN - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.CoreBuiltIns
LESS_THAN_OR_EQUAL - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLConstants.BuiltIns
  Deprecated.
LESS_THAN_OR_EQUAL - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.CoreBuiltIns
LETTER - Static variable in interface edu.stanford.smi.protegex.owl.model.classparser.compact.CompactParserConstants
LETTER - Static variable in interface edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxParserConstants
LETTER - Static variable in interface edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParserConstants
LexicalError(boolean, int, int, int, String, char) - Static method in error edu.stanford.smi.protegex.owl.model.classparser.compact.TokenMgrError
  Returns a detailed message for the Error when it is thrown by the token manager to indicate a lexical error.
LexicalError(boolean, int, int, int, String, char) - Static method in error edu.stanford.smi.protegex.owl.model.classparser.dl.TokenMgrError
  Returns a detailed message for the Error when it is thrown by the token manager to indicate a lexical error.
LexicalError(boolean, int, int, int, String, char) - Static method in error edu.stanford.smi.protegex.owl.model.classparser.manchester.TokenMgrError
  Returns a detailed message for the Error when it is thrown by the token manager to indicate a lexical error.
lexStateNames - Static variable in class edu.stanford.smi.protegex.owl.model.classparser.compact.CompactParserTokenManager
lexStateNames - Static variable in class edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxParserTokenManager
lexStateNames - Static variable in class edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParserTokenManager
Limit - Static variable in class edu.stanford.smi.protegex.owl.swrl.model.SQWRLNames
line - Variable in class edu.stanford.smi.protegex.owl.model.classparser.compact.JavaCharStream
line - Variable in class edu.stanford.smi.protegex.owl.model.classparser.dl.JavaCharStream
line - Variable in class edu.stanford.smi.protegex.owl.model.classparser.manchester.JavaCharStream
LINE_COLOR - Static variable in class edu.stanford.smi.protegex.owl.ui.components.annotations.AnnotationsTableCellHolder
LIST - Static variable in interface edu.stanford.smi.protegex.owl.model.RDFNames.Cls
LIST_CONCAT - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLConstants.BuiltIns
  Deprecated.
LIST_INTERSECTION - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLConstants.BuiltIns
  Deprecated.
LIST_SUBTRACTION - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLConstants.BuiltIns
  Deprecated.
listAnonTopLevelClasses(OntModel) - Static method in class edu.stanford.smi.protegex.owl.jena.JenaNormalizer
listDependingTriples(RDFResource) - Static method in class edu.stanford.smi.protegex.owl.model.triplestore.TripleStoreUtil
  Gets all Triples that are contained "within" a resource definition block.
listDistinctMembers() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLAllDifferent
listDistinctMembers() - Method in interface edu.stanford.smi.protegex.owl.model.OWLAllDifferent
listEditors() - Static method in class edu.stanford.smi.protegex.owl.ui.editors.PropertyValueEditorManager
ListenerExample - Class in edu.stanford.smi.protegex.owlx.examples
ListenerExample() - Constructor for class edu.stanford.smi.protegex.owlx.examples.ListenerExample
listHomeResources() - Method in class edu.stanford.smi.protegex.owl.model.triplestore.impl.TripleStoreImpl
listHomeResources() - Method in interface edu.stanford.smi.protegex.owl.model.triplestore.TripleStore
  Gets all resources that have their "home" in this triple store.
listIgnoreImports() - Method in class edu.stanford.smi.protegex.owl.jena.creator.JenaCreator
listKeys() - Method in class edu.stanford.smi.protegex.owl.model.project.DefaultSettingsMap
listKeys() - Method in interface edu.stanford.smi.protegex.owl.model.project.SettingsMap
listObjects(RDFResource, RDFProperty) - Method in class edu.stanford.smi.protegex.owl.model.triplestore.impl.TripleStoreImpl
listObjects(RDFResource, RDFProperty) - Method in interface edu.stanford.smi.protegex.owl.model.triplestore.TripleStore
  Gets the values of a given subject/property combination.
listOneOf() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLEnumeratedClass
listOneOf() - Method in interface edu.stanford.smi.protegex.owl.model.OWLEnumeratedClass
  Gets an Iterator of the values in the owl:oneOf list.
listOperands() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLNAryLogicalClass
listOperands() - Method in interface edu.stanford.smi.protegex.owl.model.OWLNAryLogicalClass
  Gets the operand classes as an ordered Iterator.
listOWLAnonymousClasses() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
listOWLAnonymousClasses() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets an Iterator of all OWLAnonymousClasses in the ontology.
listOWLNamedClasses() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
listOWLNamedClasses() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets an Iterator on all OWLNamedClasses in the ontology, including system classes.
listPropertyValues(Resource, Property) - Static method in class edu.stanford.smi.protegex.owl.jena.Jena
listPropertyValues(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
listPropertyValues(RDFProperty, boolean) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
listPropertyValues(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFIndividual
listPropertyValues(RDFProperty, boolean) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFIndividual
listPropertyValues(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
listPropertyValues(RDFProperty, boolean) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
listPropertyValues(RDFResource, RDFProperty, boolean) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
listPropertyValues(RDFProperty) - Method in interface edu.stanford.smi.protegex.owl.model.RDFResource
  Gets all direct values of a certain property as an Iterator.
listPropertyValues(RDFProperty, boolean) - Method in interface edu.stanford.smi.protegex.owl.model.RDFResource
  Gets all values of a certain property as an Iterator.
listPropertyValuesAs(RDFProperty, Class) - Method in class edu.stanford.smi.protegex.owl.javacode.AbstractCodeGeneratorIndividual
listPropertyValuesAs(RDFProperty, Class) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
listPropertyValuesAs(RDFProperty, Class) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFIndividual
listPropertyValuesAs(RDFProperty, Class) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
listPropertyValuesAs(RDFResource, RDFProperty, Class) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
listPropertyValuesAs(RDFProperty, Class) - Method in interface edu.stanford.smi.protegex.owl.model.RDFResource
listPurchases() - Method in interface edu.stanford.smi.protegex.owlx.examples.javaDemo.model.Customer_
listPurchases() - Method in class edu.stanford.smi.protegex.owlx.examples.javaDemo.model.impl.DefaultCustomer_
listRDFProperties() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
listRDFProperties() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets an Iterator on all RDFProperties in the model, including system properties.
listRDFSNamedClasses() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
listRDFSNamedClasses() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Gets an Iterator on all RDFSNamedClasses in the ontology, including system classes.
listRDFTypes() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
listRDFTypes() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFIndividual
listRDFTypes() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
listRDFTypes() - Method in interface edu.stanford.smi.protegex.owl.model.RDFResource
  Gets an Iterator on the rdf:types of this.
listReferences(Object, int) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
listReferences(Object, int) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Finds all references to a given object, i.e.
listSubjects(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
listSubjects(RDFProperty) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  The the subjects of all triples where a given property has any value.
listSubjects(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.model.triplestore.impl.TripleStoreImpl
listSubjects(RDFProperty, Object) - Method in class edu.stanford.smi.protegex.owl.model.triplestore.impl.TripleStoreImpl
listSubjects(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.model.triplestore.impl.TripleStoreModelImpl
listSubjects(RDFProperty) - Method in interface edu.stanford.smi.protegex.owl.model.triplestore.TripleStore
  The the subjects of all triples where a given property has any value.
listSubjects(RDFProperty, Object) - Method in interface edu.stanford.smi.protegex.owl.model.triplestore.TripleStore
  Gets the subjects of all triples with a given predicate and object.
listSubjects(RDFProperty) - Method in interface edu.stanford.smi.protegex.owl.model.triplestore.TripleStoreModel
  Returns an iterator of all subjects in any triplestore that have a value for property.
listSubjects(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.server.triplestore.ClientTripleStoreModel
listSwitchableTypes() - Static method in class edu.stanford.smi.protegex.owl.ui.cls.SwitchableClassDefinitionWidget
listTriples() - Method in class edu.stanford.smi.protegex.owl.model.triplestore.impl.TripleStoreImpl
listTriples() - Method in class edu.stanford.smi.protegex.owl.model.triplestore.TriplePath
listTriples() - Method in interface edu.stanford.smi.protegex.owl.model.triplestore.TripleStore
listTriplesWithObject(RDFObject) - Method in class edu.stanford.smi.protegex.owl.model.triplestore.impl.TripleStoreImpl
listTriplesWithObject(RDFObject) - Method in interface edu.stanford.smi.protegex.owl.model.triplestore.TripleStore
  Lists all Triples that have a given object.
listTriplesWithSubject(RDFResource) - Method in class edu.stanford.smi.protegex.owl.model.triplestore.impl.TripleStoreImpl
listTriplesWithSubject(RDFResource) - Method in class edu.stanford.smi.protegex.owl.model.triplestore.impl.TripleStoreModelImpl
listTriplesWithSubject(RDFResource) - Method in interface edu.stanford.smi.protegex.owl.model.triplestore.TripleStore
  Lists all Triples that have a given subject.
listTriplesWithSubject(RDFResource) - Method in interface edu.stanford.smi.protegex.owl.model.triplestore.TripleStoreModel
  Combines the result of the corresponding method of each TripleStore.
listTriplesWithSubject(RDFResource) - Method in class edu.stanford.smi.protegex.owl.server.triplestore.ClientTripleStoreModel
listUserTripleStores() - Method in class edu.stanford.smi.protegex.owl.model.triplestore.impl.TripleStoreModelImpl
listUserTripleStores() - Method in interface edu.stanford.smi.protegex.owl.model.triplestore.TripleStoreModel
  Provides an Iterator on all user TripleStores, i.e.
listUserTripleStores() - Method in class edu.stanford.smi.protegex.owl.server.triplestore.ClientTripleStoreModel
listWidgets() - Method in class edu.stanford.smi.protegex.owl.ui.widget.MultiWidgetPropertyWidget
LITERAL - Static variable in interface edu.stanford.smi.protegex.owl.model.RDFSNames.Cls
  Deprecated. This is not a class. Use RDFSNames.LITERAL instead.
LITERAL - Static variable in interface edu.stanford.smi.protegex.owl.model.RDFSNames
LiteralTable - Class in edu.stanford.smi.protegex.owl.ui.components.literaltable
  A JTable to view/edit an RDFSLiteralTableModel.
LiteralTable(RDFProperty) - Constructor for class edu.stanford.smi.protegex.owl.ui.components.literaltable.LiteralTable
LiteralTableComponent - Class in edu.stanford.smi.protegex.owl.ui.components.literaltable
LiteralTableComponent(RDFProperty) - Constructor for class edu.stanford.smi.protegex.owl.ui.components.literaltable.LiteralTableComponent
LiteralTableComponent(RDFProperty, String) - Constructor for class edu.stanford.smi.protegex.owl.ui.components.literaltable.LiteralTableComponent
LiteralTableComponent(RDFProperty, String, boolean) - Constructor for class edu.stanford.smi.protegex.owl.ui.components.literaltable.LiteralTableComponent
LiteralTableModel - Class in edu.stanford.smi.protegex.owl.ui.components.literaltable
  A TableModel managing a list of RDFSLiterals which are predicate values of a given subject/predicate pair.
LiteralTableModel(RDFProperty) - Constructor for class edu.stanford.smi.protegex.owl.ui.components.literaltable.LiteralTableModel
load(URI, String) - Method in class edu.stanford.smi.protegex.owl.jena.JenaOWLModel
  Deprecated. use `OwlProjectFromStreamCreator`, `OwlProjectFromReaderCreator` or `OwlDatabaseFromFileCreator`
load(InputStream, String) - Method in class edu.stanford.smi.protegex.owl.jena.JenaOWLModel
  Deprecated. use `OwlProjectFromStreamCreator`, `OwlProjectFromReaderCreator` or `OwlDatabaseFromFileCreator`
load(Reader, String) - Method in class edu.stanford.smi.protegex.owl.jena.JenaOWLModel
  Deprecated. use `OwlProjectFromStreamCreator`, `OwlProjectFromReaderCreator` or `OwlDatabaseFromFileCreator`
load(URI, String, Collection<MessageError>) - Method in class edu.stanford.smi.protegex.owl.jena.JenaOWLModel
  Deprecated. use `OwlProjectFromStreamCreator`, `OwlProjectFromReaderCreator` or `OwlDatabaseFromFileCreator`
load(Object) - Method in class edu.stanford.smi.protegex.owl.ui.clsproperties.PropertyRestrictionsTreeRenderer
load(URL) - Method in class edu.stanford.smi.protegex.owl.ui.forms.AbsoluteFormsLoader
load(InputStream) - Method in class edu.stanford.smi.protegex.owl.ui.forms.AbsoluteFormsLoader
load(Object) - Method in class edu.stanford.smi.protegex.owl.ui.ResourceRenderer
load(Object) - Method in class edu.stanford.smi.protegex.owl.ui.ResourceRendererWithBrowserText
loadAll() - Method in class edu.stanford.smi.protegex.owl.ui.forms.AbsoluteFormsLoader
loadCls(Cls) - Method in class edu.stanford.smi.protegex.owl.ui.explorer.ExplorerRenderer
loadCls(Cls) - Method in class edu.stanford.smi.protegex.owl.ui.matrix.cls.ConditionsCellRenderer
loadCls(Cls) - Method in class edu.stanford.smi.protegex.owl.ui.ResourceRenderer
loadCls(Cls) - Method in class edu.stanford.smi.protegex.owl.ui.restrictions.RestrictionKindRenderer
loadClsAfterIcon(Cls) - Method in class edu.stanford.smi.protegex.owl.ui.ResourceRenderer
loadedClass - Variable in class edu.stanford.smi.protegex.owl.ui.ResourceRenderer
loadedInstance - Variable in class edu.stanford.smi.protegex.owl.ui.ResourceRenderer
loadEncodedNamespaceFromModel(OWLModel, TripleStore, Collection) - Static method in class edu.stanford.smi.protegex.owl.model.factory.FactoryUtils
loadFormsProperties(OWLModel, SlotWidget, Resource) - Static method in class edu.stanford.smi.protegex.owl.ui.forms.OWLWidgetPropertyListUtil
loadGlobalRepositories() - Method in class edu.stanford.smi.protegex.owl.repository.util.RepositoryFileManager
loadHeader() - Method in class edu.stanford.smi.protegex.owl.ui.resourcedisplay.ResourceDisplay
loadHeaderLabel(Instance) - Method in class edu.stanford.smi.protegex.owl.ui.resourcedisplay.ResourceDisplay
loadHeaderWithCls(Cls) - Method in class edu.stanford.smi.protegex.owl.ui.resourcedisplay.ResourceDisplay
loadHeaderWithOntology(OWLOntology) - Method in class edu.stanford.smi.protegex.owl.ui.resourcedisplay.ResourceDisplay
loadHeaderWithSimpleInstance(Instance) - Method in class edu.stanford.smi.protegex.owl.ui.resourcedisplay.ResourceDisplay
loadHeaderWithSlot(Slot) - Method in class edu.stanford.smi.protegex.owl.ui.resourcedisplay.ResourceDisplay
loadImportedAssertions(URI) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
  This method is not intended for general consumption - use the ImportHelper instead.
loadImportedAssertions(OWLModel, URI) - Method in class edu.stanford.smi.protegex.owl.repository.impl.AbstractStreamBasedRepositoryImpl
loadImportedAssertions(OWLModel, URI) - Method in class edu.stanford.smi.protegex.owl.repository.impl.DatabaseRepository
loadImportedAssertions(OWLModel, URI) - Method in interface edu.stanford.smi.protegex.owl.repository.Repository
loadImports(OWLModel, Collection) - Static method in class edu.stanford.smi.protegex.owl.database.DatabaseFactoryUtils
loadKnowledgeBase(KnowledgeBase, PropertyList, Collection) - Method in class edu.stanford.smi.protegex.owl.database.OWLDatabaseKnowledgeBaseFactory
loadKnowledgeBase(KnowledgeBase, PropertyList, Collection) - Method in class edu.stanford.smi.protegex.owl.jena.JenaKnowledgeBaseFactory
loadOntModel(String) - Static method in class edu.stanford.smi.protegex.owl.ui.profiles.ProfilesManager
loadPlugins() - Static method in class edu.stanford.smi.protegex.owl.swrl.P3SWRLTabPluginManager
loadProjectRepositories(OWLDatabaseModel) - Method in class edu.stanford.smi.protegex.owl.database.creator.OwlDatabaseFromFileCreator
loadProjectRepositories(OWLModel) - Static method in class edu.stanford.smi.protegex.owl.repository.util.RepositoryFileManager
loadProjectRepositories() - Method in class edu.stanford.smi.protegex.owl.repository.util.RepositoryFileManager
loadProjectRepositoriesFromURI(OWLModel, URI, boolean) - Static method in class edu.stanford.smi.protegex.owl.repository.util.RepositoryUtil
  Loads the project repositories from a given URI.
loadSlot(Slot) - Method in class edu.stanford.smi.protegex.owl.ui.ResourceRenderer
LoadTravelOntology - Class in edu.stanford.smi.protegex.owlx.examples
  A simple demo that loads the travel ontology.
LoadTravelOntology() - Constructor for class edu.stanford.smi.protegex.owlx.examples.LoadTravelOntology
loadTriples(String, URI, InputStream) - Method in class edu.stanford.smi.protegex.owl.jena.parser.ProtegeOWLParser
  Loading triples
LOCAL_FILE_NAME - Static variable in class edu.stanford.smi.protegex.owl.jena.parser.ImplicitImports
LocalClassificationFrameStore - Class in edu.stanford.smi.protegex.owl.model.framestore
  A FrameStore that intercepts any access to those slots that store the classification results and redirects them to values stored in local maps.
LocalClassificationFrameStore(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.model.framestore.LocalClassificationFrameStore
LocalFileRepository - Class in edu.stanford.smi.protegex.owl.repository.impl
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Sep 21, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
LocalFileRepository(File) - Constructor for class edu.stanford.smi.protegex.owl.repository.impl.LocalFileRepository
LocalFileRepository(File, boolean) - Constructor for class edu.stanford.smi.protegex.owl.repository.impl.LocalFileRepository
LocalFileRepositoryCreatorWizardPlugin - Class in edu.stanford.smi.protegex.owl.ui.repository.wizard.impl
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Sep 26, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
LocalFileRepositoryCreatorWizardPlugin() - Constructor for class edu.stanford.smi.protegex.owl.ui.repository.wizard.impl.LocalFileRepositoryCreatorWizardPlugin
LocalFileRepositoryFactoryPlugin - Class in edu.stanford.smi.protegex.owl.repository.impl
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Sep 22, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
LocalFileRepositoryFactoryPlugin() - Constructor for class edu.stanford.smi.protegex.owl.repository.impl.LocalFileRepositoryFactoryPlugin
LocalFileWizardPage - Class in edu.stanford.smi.protegex.owl.ui.metadatatab.imports.emptyimport
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Oct 5, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
LocalFileWizardPage(OWLWizard, OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.ui.metadatatab.imports.emptyimport.LocalFileWizardPage
LocalFolderRepository - Class in edu.stanford.smi.protegex.owl.repository.impl
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Sep 12, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
LocalFolderRepository(File) - Constructor for class edu.stanford.smi.protegex.owl.repository.impl.LocalFolderRepository
LocalFolderRepository(File, boolean) - Constructor for class edu.stanford.smi.protegex.owl.repository.impl.LocalFolderRepository
LocalFolderRepository(File, boolean, boolean) - Constructor for class edu.stanford.smi.protegex.owl.repository.impl.LocalFolderRepository
LocalFolderRepositoryCreatorWizardPlugin - Class in edu.stanford.smi.protegex.owl.ui.repository.wizard.impl
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Sep 26, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
LocalFolderRepositoryCreatorWizardPlugin() - Constructor for class edu.stanford.smi.protegex.owl.ui.repository.wizard.impl.LocalFolderRepositoryCreatorWizardPlugin
LocalFolderRepositoryFactoryPlugin - Class in edu.stanford.smi.protegex.owl.repository.impl
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Sep 19, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
LocalFolderRepositoryFactoryPlugin() - Constructor for class edu.stanford.smi.protegex.owl.repository.impl.LocalFolderRepositoryFactoryPlugin
localize(KnowledgeBase) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractNamespaceManager
localize(KnowledgeBase) - Method in class edu.stanford.smi.protegex.owl.model.impl.GetExpressionRootForAnonymousClassJob
localize(KnowledgeBase) - Method in class edu.stanford.smi.protegex.owl.model.impl.GetOwnerForAnonymousClassJob
localize(KnowledgeBase) - Method in class edu.stanford.smi.protegex.owl.server.triplestore.Package
localize(KnowledgeBase) - Method in class edu.stanford.smi.protegex.owl.ui.importstree.server.CheckSetActiveImportAllowedJob
localize(KnowledgeBase) - Method in class edu.stanford.smi.protegex.owl.ui.importstree.server.SetActiveOntologyJob
localize(KnowledgeBase) - Method in class edu.stanford.smi.protegex.owl.util.job.GetIsIncludedJob
localize(KnowledgeBase) - Method in class edu.stanford.smi.protegex.owl.util.job.GetTripleStoreOfTripleJob
lock() - Method in class edu.stanford.smi.protegex.owl.jena.graph.ProtegePrefixMapping
log - Static variable in class edu.stanford.smi.protegex.owl.database.DatabaseFactoryUtils
log - Static variable in class edu.stanford.smi.protegex.owl.inference.dig.reasoner.DefaultDIGReasoner
  Deprecated. Use DIGReasonerPreferences to set logging
log(Level, Document) - Static method in class edu.stanford.smi.protegex.owl.inference.dig.reasoner.DefaultDIGReasoner
  A helper method that lets us log the DIG XML used to communicate with the reasoner.
log - Static variable in class edu.stanford.smi.protegex.owl.storage.KnowledgeBaseCopier
log - Static variable in class edu.stanford.smi.protegex.owl.storage.OWL2OWLCopier
log - Static variable in class edu.stanford.smi.protegex.owl.storage.ProtegeSaver
logError(DIGError) - Method in class edu.stanford.smi.protegex.owl.inference.dig.reasoner.logger.DIGLogger
logErrorOrWarning(RDFResource, String, String) - Method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DefaultDIGRenderer
LOGGER_NAME - Static variable in interface edu.stanford.smi.protegex.owl.inference.dig.reasoner.DIGReasoner
LOGICAL_CLASS - Static variable in interface edu.stanford.smi.protegex.owl.model.OWLNames.Cls
LogicalClassCreatorUtility - Class in edu.stanford.smi.protegex.owl.jena.parser
LogicalClassCreatorUtility() - Constructor for class edu.stanford.smi.protegex.owl.jena.parser.LogicalClassCreatorUtility
LogicalClassDefinitions - Class in edu.stanford.smi.protegex.owlx.examples
LogicalClassDefinitions() - Constructor for class edu.stanford.smi.protegex.owlx.examples.LogicalClassDefinitions
LogicClassDefinitionWidget - Class in edu.stanford.smi.protegex.owl.ui.cls
LogicClassDefinitionWidget() - Constructor for class edu.stanford.smi.protegex.owl.ui.cls.LogicClassDefinitionWidget
LogicClassDefinitionWidgetType - Class in edu.stanford.smi.protegex.owl.ui.cls
LogicClassDefinitionWidgetType() - Constructor for class edu.stanford.smi.protegex.owl.ui.cls.LogicClassDefinitionWidgetType
logImport(String, String) - Method in class edu.stanford.smi.protegex.owl.jena.parser.DefaultProtegeOWLParserLogger
logImport(String, String) - Method in interface edu.stanford.smi.protegex.owl.jena.parser.ProtegeOWLParserLogger
logRecordPosted(ReasonerLogRecord) - Method in interface edu.stanford.smi.protegex.owl.inference.protegeowl.log.ReasonerLoggerListener
logTripleAdded(RDFResource, RDFProperty, Object) - Method in class edu.stanford.smi.protegex.owl.jena.parser.DefaultProtegeOWLParserLogger
logTripleAdded(RDFResource, RDFProperty, Object) - Method in interface edu.stanford.smi.protegex.owl.jena.parser.ProtegeOWLParserLogger
logWarning(String) - Method in class edu.stanford.smi.protegex.owl.jena.parser.DefaultProtegeOWLParserLogger
logWarning(String) - Method in interface edu.stanford.smi.protegex.owl.jena.parser.ProtegeOWLParserLogger
LONG - Static variable in interface edu.stanford.smi.protegex.owl.model.XSDNames
lookingAhead - Variable in class edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParser
LOWER_CASE - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLConstants.BuiltIns
  Deprecated.
LOWER_CASE - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.CoreBuiltIns

## M

main(String[]) - Static method in class edu.stanford.smi.protegex.owl.ProtegeOWL
  Starts the Protege UI, optionally with a given Project file.
main(String[]) - Static method in class edu.stanford.smi.protegex.owl.repository.impl.FTPRepository
main(String[]) - Static method in class edu.stanford.smi.protegex.owl.swrl.model.examples.SWRLFactoryTest
main(String[]) - Static method in class edu.stanford.smi.protegex.owl.ui.forms.AbsoluteFormsLoader
main(String[]) - Static method in class edu.stanford.smi.protegex.owl.ui.metadatatab.imports.wizard.ImportTypePage
main(String[]) - Static method in class edu.stanford.smi.protegex.owl.ui.metadatatab.imports.wizard.ImportWizard
main(String[]) - Static method in class edu.stanford.smi.protegex.owl.ui.metrics.lang.ExpressivityIcons
main(String[]) - Static method in class edu.stanford.smi.protegex.owl.ui.properties.OWLPropertyHierarchiesPanel
main(String[]) - Static method in class edu.stanford.smi.protegex.owl.ui.repository.wizard.RepositoryWizard
main(String[]) - Static method in class edu.stanford.smi.protegex.owlx.examples.CreateDefinedClass
main(String[]) - Static method in class edu.stanford.smi.protegex.owlx.examples.CreateNamedClasses
main(String[]) - Static method in class edu.stanford.smi.protegex.owlx.examples.CreateRestriction
main(String[]) - Static method in class edu.stanford.smi.protegex.owlx.examples.CreateSimpleOWLModel
main(String[]) - Static method in class edu.stanford.smi.protegex.owlx.examples.EnumeratedClassExample
main(String[]) - Static method in class edu.stanford.smi.protegex.owlx.examples.FormInStandAloneApplicationExample
main(String[]) - Static method in class edu.stanford.smi.protegex.owlx.examples.javaDemo.JavaDemoApplication
main(String[]) - Static method in class edu.stanford.smi.protegex.owlx.examples.JenaOntModelExample
main(String[]) - Static method in class edu.stanford.smi.protegex.owlx.examples.ListenerExample
main(String[]) - Static method in class edu.stanford.smi.protegex.owlx.examples.LoadTravelOntology
main(String[]) - Static method in class edu.stanford.smi.protegex.owlx.examples.LogicalClassDefinitions
main(String[]) - Static method in class edu.stanford.smi.protegex.owlx.examples.ObjectPropertyExamples
main(String[]) - Static method in class edu.stanford.smi.protegex.owlx.examples.QueryClassesExample
main(String[]) - Static method in class edu.stanford.smi.protegex.owlx.examples.RDFExample
main(String[]) - Static method in class edu.stanford.smi.protegex.owlx.examples.RDFSDatatypeExamples
main(String[]) - Static method in class edu.stanford.smi.protegex.owlx.examples.RDFSLabelExamples
main(String[]) - Static method in class edu.stanford.smi.protegex.owlx.examples.SwingListExample
main(String[]) - Static method in class edu.stanford.smi.protegex.owlx.examples.UntypedResourcesExample
mainSplitPane - Variable in class edu.stanford.smi.protegex.owl.ui.cls.OWLClassesTab
MakeBag - Static variable in class edu.stanford.smi.protegex.owl.swrl.model.SQWRLNames
makeDifferentFrom(OWLModel, String, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
makeDifferentFrom(OWLModel, URI, URI) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
makeDifferentFrom(OWLModel, Set<URI>) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
makeHiddenClsesWithSubclassesVisible(OWLModel) - Static method in class edu.stanford.smi.protegex.owl.ui.menu.OWLMenuProjectPlugin
makeOWLFileNameRelativeIfPossible(Project) - Method in class edu.stanford.smi.protegex.owl.jena.JenaKnowledgeBaseFactory
makeSameAs(OWLModel, Set<URI>) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
makeSameAs(OWLModel, String, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
makeSameAs(OWLModel, URI, URI) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
MakeSet - Static variable in class edu.stanford.smi.protegex.owl.swrl.model.SQWRLNames
ManchesterOWLClassDisplay - Class in edu.stanford.smi.protegex.owl.model.classdisplay.manchester
ManchesterOWLClassDisplay() - Constructor for class edu.stanford.smi.protegex.owl.model.classdisplay.manchester.ManchesterOWLClassDisplay
ManchesterOWLClassParser - Class in edu.stanford.smi.protegex.owl.model.classparser.manchester
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Sep 5, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
ManchesterOWLClassParser() - Constructor for class edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLClassParser
ManchesterOWLParser - Class in edu.stanford.smi.protegex.owl.model.classparser.manchester
ManchesterOWLParser(InputStream) - Constructor for class edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParser
ManchesterOWLParser(InputStream, String) - Constructor for class edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParser
ManchesterOWLParser(Reader) - Constructor for class edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParser
ManchesterOWLParser(ManchesterOWLParserTokenManager) - Constructor for class edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParser
ManchesterOWLParserConstants - Interface in edu.stanford.smi.protegex.owl.model.classparser.manchester
ManchesterOWLParserTokenManager - Class in edu.stanford.smi.protegex.owl.model.classparser.manchester
ManchesterOWLParserTokenManager(JavaCharStream) - Constructor for class edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParserTokenManager
ManchesterOWLParserTokenManager(JavaCharStream, int) - Constructor for class edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParserTokenManager
ManchesterOWLParserUtil - Class in edu.stanford.smi.protegex.owl.model.classparser.manchester
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Sep 5, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
ManchesterOWLParserUtil() - Constructor for class edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParserUtil
ManchesterOWLTextPane - Class in edu.stanford.smi.protegex.owl.ui.clsdesc.manchester
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Sep 5, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
ManchesterOWLTextPane(OWLModel, SymbolErrorDisplay, ResourceNameMatcher, SyntaxConverter) - Constructor for class edu.stanford.smi.protegex.owl.ui.clsdesc.manchester.ManchesterOWLTextPane
map1(Object) - Method in class edu.stanford.smi.protegex.owl.jena.Jena.ObjectMapper
markDeleted(boolean) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeInstance
markDeleting() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeInstance
markEnd() - Method in class edu.stanford.smi.protegex.owl.inference.util.TimeDifference
markStart() - Method in class edu.stanford.smi.protegex.owl.inference.util.TimeDifference
MATCH_VALUE - Static variable in class edu.stanford.smi.protegex.owl.ui.search.finder.FindResult
MATCHES - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLConstants.BuiltIns
  Deprecated.
MATCHES - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.CoreBuiltIns
MatrixColumn - Interface in edu.stanford.smi.protegex.owl.ui.matrix
MatrixFilter - Interface in edu.stanford.smi.protegex.owl.ui.matrix
  An interface for objects that can determine whether a certain Frame shall appear in a MatrixTable.
MatrixPanel - Class in edu.stanford.smi.protegex.owl.ui.matrix
MatrixPanel(OWLModel, MatrixFilter, MatrixTableModel) - Constructor for class edu.stanford.smi.protegex.owl.ui.matrix.MatrixPanel
MatrixTable - Class in edu.stanford.smi.protegex.owl.ui.matrix
MatrixTable(MatrixTableModel) - Constructor for class edu.stanford.smi.protegex.owl.ui.matrix.MatrixTable
MatrixTableModel - Class in edu.stanford.smi.protegex.owl.ui.matrix
MatrixTableModel(OWLModel, MatrixFilter) - Constructor for class edu.stanford.smi.protegex.owl.ui.matrix.MatrixTableModel
MAX - Static variable in interface edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParserConstants
Max - Static variable in class edu.stanford.smi.protegex.owl.swrl.model.SQWRLNames
MAX_ARGS - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.Slot
MAX_CARDINALITY - Static variable in interface edu.stanford.smi.protegex.owl.model.OWLNames.Slot
MAX_CARDINALITY_RESTRICTION - Static variable in interface edu.stanford.smi.protegex.owl.model.OWLNames.Cls
MAX_EXCLUSIVE - Static variable in interface edu.stanford.smi.protegex.owl.model.XSDNames.Facet
MAX_EXCLUSIVE - Static variable in class edu.stanford.smi.protegex.owl.model.XSPNames
  Deprecated. use the helper method `XSPNames.get(int resourceID)`
MAX_INCLUSIVE - Static variable in interface edu.stanford.smi.protegex.owl.model.XSDNames.Facet
MAX_INCLUSIVE - Static variable in class edu.stanford.smi.protegex.owl.model.XSPNames
  Deprecated. use the helper method `XSPNames.get(int resourceID)`
MAX_LENGTH - Static variable in interface edu.stanford.smi.protegex.owl.model.XSDNames.Facet
MAX_LENGTH - Static variable in class edu.stanford.smi.protegex.owl.model.XSPNames
  Deprecated. use the helper method `XSPNames.get(int resourceID)`
MaxAggregateFunction - Static variable in class edu.stanford.smi.protegex.owl.swrl.model.SQWRLNames
MaxCardinality_Restrictions - Static variable in class edu.stanford.smi.protegex.owl.ui.profiles.OWLProfiles
maxNextCharInd - Variable in class edu.stanford.smi.protegex.owl.model.classparser.compact.JavaCharStream
maxNextCharInd - Variable in class edu.stanford.smi.protegex.owl.model.classparser.dl.JavaCharStream
maxNextCharInd - Variable in class edu.stanford.smi.protegex.owl.model.classparser.manchester.JavaCharStream
Median - Static variable in class edu.stanford.smi.protegex.owl.swrl.model.SQWRLNames
MedianAggregateFunction - Static variable in class edu.stanford.smi.protegex.owl.swrl.model.SQWRLNames
MEMBER - Static variable in interface edu.stanford.smi.protegex.owl.model.RDFSNames.Slot
MEMBER - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLConstants.BuiltIns
  Deprecated.
MENU_NAME - Static variable in class edu.stanford.smi.protegex.owl.ui.menu.OWLMenuProjectPlugin
messageChanged(ReasonerTaskEvent) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.ClassifyTaxonomyTask
messageChanged(ReasonerTaskEvent) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.ClassifyTaxonomyTask
messageChanged(ReasonerTaskEvent) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.ReasonerTaskAdapter
messageChanged(ReasonerTaskEvent) - Method in interface edu.stanford.smi.protegex.owl.inference.protegeowl.task.ReasonerTaskListener
MessageLogRecord - Class in edu.stanford.smi.protegex.owl.inference.protegeowl.log
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Aug 22, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
MessageLogRecord(RDFResource, String, ReasonerLogRecord) - Constructor for class edu.stanford.smi.protegex.owl.inference.protegeowl.log.MessageLogRecord
META_SLOT_NAMES - Static variable in class edu.stanford.smi.protegex.owl.ui.menu.preferences.RenderingPanel
MetricObject - Class in edu.stanford.smi.protegex.owl.ui.metrics
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Apr 20, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
MetricObject(String, Object) - Constructor for class edu.stanford.smi.protegex.owl.ui.metrics.MetricObject
MetricObject(String, int) - Constructor for class edu.stanford.smi.protegex.owl.ui.metrics.MetricObject
MetricRenderer - Class in edu.stanford.smi.protegex.owl.ui.metrics
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Apr 21, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
MetricRenderer() - Constructor for class edu.stanford.smi.protegex.owl.ui.metrics.MetricRenderer
MetricsPanel - Class in edu.stanford.smi.protegex.owl.ui.metrics
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Apr 20, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
MetricsPanel(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.ui.metrics.MetricsPanel
MIN - Static variable in interface edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParserConstants
Min - Static variable in class edu.stanford.smi.protegex.owl.swrl.model.SQWRLNames
MIN_ARGS - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.Slot
MIN_CARDINALITY - Static variable in interface edu.stanford.smi.protegex.owl.model.OWLNames.Slot
MIN_CARDINALITY_RESTRICTION - Static variable in interface edu.stanford.smi.protegex.owl.model.OWLNames.Cls
MIN_EXCLUSIVE - Static variable in interface edu.stanford.smi.protegex.owl.model.XSDNames.Facet
MIN_EXCLUSIVE - Static variable in class edu.stanford.smi.protegex.owl.model.XSPNames
  Deprecated. use the helper method `XSPNames.get(int resourceID)`
MIN_INCLUSIVE - Static variable in interface edu.stanford.smi.protegex.owl.model.XSDNames.Facet
MIN_INCLUSIVE - Static variable in class edu.stanford.smi.protegex.owl.model.XSPNames
  Deprecated. use the helper method `XSPNames.get(int resourceID)`
MIN_LENGTH - Static variable in interface edu.stanford.smi.protegex.owl.model.XSDNames.Facet
MIN_LENGTH - Static variable in class edu.stanford.smi.protegex.owl.model.XSPNames
  Deprecated. use the helper method `XSPNames.get(int resourceID)`
MinAggregateFunction - Static variable in class edu.stanford.smi.protegex.owl.swrl.model.SQWRLNames
MinCardinality_Restrictions - Static variable in class edu.stanford.smi.protegex.owl.ui.profiles.OWLProfiles
MinCardiZeroTest - Class in edu.stanford.smi.protegex.owl.testing.style
  Finds classes that have a minimum cardinality zero restriction.
MinCardiZeroTest() - Constructor for class edu.stanford.smi.protegex.owl.testing.style.MinCardiZeroTest
mnfs - Variable in class edu.stanford.smi.protegex.owl.jena.parser.AbstractStatefulTripleProcessor
mnfs - Variable in class edu.stanford.smi.protegex.owl.model.triplestore.impl.TripleStoreModelImpl
MOD - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLConstants.BuiltIns
  Deprecated.
MOD - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.CoreBuiltIns
ModalDialogFactory - Interface in edu.stanford.smi.protegex.owl.ui.dialogs
  The abstraction of objects that can create various dialogs (comparable to JOptionPane etc).
ModalDialogFactory.CloseCallback - Interface in edu.stanford.smi.protegex.owl.ui.dialogs
ModalProgressBarDialog - Class in edu.stanford.smi.protegex.owl.ui.widget
ModalProgressBarDialog(int, int, Frame, String) - Constructor for class edu.stanford.smi.protegex.owl.ui.widget.ModalProgressBarDialog
ModalProgressBarManager - Class in edu.stanford.smi.protegex.owl.ui.widget
  An object managing a ModalProgressBarDialog serving as ProgressDisplay.
ModalProgressBarManager(String) - Constructor for class edu.stanford.smi.protegex.owl.ui.widget.ModalProgressBarManager
MODE_CLOSE - Static variable in interface edu.stanford.smi.protegex.owl.ui.dialogs.ModalDialogFactory
MODE_OK_CANCEL - Static variable in interface edu.stanford.smi.protegex.owl.ui.dialogs.ModalDialogFactory
MODE_YES_NO - Static variable in interface edu.stanford.smi.protegex.owl.ui.dialogs.ModalDialogFactory
MODE_YES_NO_CANCEL - Static variable in interface edu.stanford.smi.protegex.owl.ui.dialogs.ModalDialogFactory
MODEL_OPERATIONS_GROUP - Static variable in interface edu.stanford.smi.protegex.owl.ui.actions.OWLModelActionConstants
ModelAdapter - Class in edu.stanford.smi.protegex.owl.model.event
ModelAdapter() - Constructor for class edu.stanford.smi.protegex.owl.model.event.ModelAdapter
modelListener - Variable in class edu.stanford.smi.protegex.owl.inference.reasoner.AbstractProtegeReasoner
ModelListener - Interface in edu.stanford.smi.protegex.owl.model.event
ModelMetrics - Class in edu.stanford.smi.protegex.owl.model.util
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Apr 20, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
ModelMetrics(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.model.util.ModelMetrics
MODIFIED - Static variable in class edu.stanford.smi.protegex.owl.ui.forms.AbsoluteFormsGenerator
mouseDragged(MouseEvent) - Method in class edu.stanford.smi.protegex.owl.ui.code.ComponentDragger
mouseListener - Static variable in class edu.stanford.smi.protegex.owl.ui.results.ResultsPanel
mouseListener - Static variable in class edu.stanford.smi.protegex.owl.ui.testing.OWLTestResultsPanel
mouseMoved(MouseEvent) - Method in class edu.stanford.smi.protegex.owl.ui.code.ComponentDragger
mousePressed(MouseEvent) - Method in class edu.stanford.smi.protegex.owl.ui.code.ComponentDragger
moveDirectSubclass(Cls, Cls) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeCls
  Deprecated. not needed
moveDirectSubclass(Cls, Cls, Cls) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not supported in OWL
moveDirectSubslot(Slot, Slot, Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not supported in OWL
moveDirectSubslot(Slot, Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeSlot
  Deprecated. not needed
moveDirectTemplateSlot(Slot, int) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeCls
  Deprecated. not needed
moveDirectTemplateSlot(Cls, Slot, int) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not supported in OWL
moveDown(Repository) - Method in class edu.stanford.smi.protegex.owl.repository.RepositoryManager
moveResources(Collection, TripleStore, TripleStore) - Static method in class edu.stanford.smi.protegex.owl.model.triplestore.TripleStoreUtil
moveUp(Repository) - Method in class edu.stanford.smi.protegex.owl.repository.RepositoryManager
MULTI_LINE_COMMENT - Static variable in interface edu.stanford.smi.protegex.owl.model.classparser.compact.CompactParserConstants
MULTI_LINE_COMMENT - Static variable in interface edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxParserConstants
MultiLiteralWidget - Static variable in class edu.stanford.smi.protegex.owl.ui.forms.ProtegeFormsNames
MultiLiteralWidget - Class in edu.stanford.smi.protegex.owl.ui.widget
MultiLiteralWidget() - Constructor for class edu.stanford.smi.protegex.owl.ui.widget.MultiLiteralWidget
MultiLiteralWidgetMetadata - Class in edu.stanford.smi.protegex.owl.ui.widget
MultiLiteralWidgetMetadata() - Constructor for class edu.stanford.smi.protegex.owl.ui.widget.MultiLiteralWidgetMetadata
MultipleTypesInstanceCache - Class in edu.stanford.smi.protegex.owl.jena.parser
MultipleTypesInstanceCache() - Constructor for class edu.stanford.smi.protegex.owl.jena.parser.MultipleTypesInstanceCache
MULTIPLY - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLConstants.BuiltIns
  Deprecated.
MULTIPLY - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.CoreBuiltIns
MULTIPLY_DAY_TIME_DURATIONS - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLConstants.BuiltIns
  Deprecated.
MULTIPLY_DAY_TIME_DURATIONS - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.CoreBuiltIns
MULTIPLY_YEAR_MONTH_DURATION - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.CoreBuiltIns
MULTIPLY_YEAR_MONTH_DURATIONS - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLConstants.BuiltIns
  Deprecated.
MultiResourceComponent - Class in edu.stanford.smi.protegex.owl.ui.components.multiresource
MultiResourceComponent(RDFProperty, boolean) - Constructor for class edu.stanford.smi.protegex.owl.ui.components.multiresource.MultiResourceComponent
MultiResourceComponent(RDFProperty, boolean, String) - Constructor for class edu.stanford.smi.protegex.owl.ui.components.multiresource.MultiResourceComponent
MultiResourceComponent(RDFProperty, boolean, String, boolean) - Constructor for class edu.stanford.smi.protegex.owl.ui.components.multiresource.MultiResourceComponent
MultiResourceList - Class in edu.stanford.smi.protegex.owl.ui.components.multiresource
MultiResourceList(RDFProperty, boolean) - Constructor for class edu.stanford.smi.protegex.owl.ui.components.multiresource.MultiResourceList
MultiResourceListModel - Class in edu.stanford.smi.protegex.owl.ui.components.multiresource
  A ListModel representing values of a subject-predicate pair.
MultiResourceListModel(RDFProperty) - Constructor for class edu.stanford.smi.protegex.owl.ui.components.multiresource.MultiResourceListModel
MultiResourceWidget - Static variable in class edu.stanford.smi.protegex.owl.ui.forms.ProtegeFormsNames
MultiResourceWidget - Class in edu.stanford.smi.protegex.owl.ui.widget
MultiResourceWidget() - Constructor for class edu.stanford.smi.protegex.owl.ui.widget.MultiResourceWidget
MultiResourceWidgetMetadata - Class in edu.stanford.smi.protegex.owl.ui.widget
MultiResourceWidgetMetadata() - Constructor for class edu.stanford.smi.protegex.owl.ui.widget.MultiResourceWidgetMetadata
MultiSlotPanel - Class in edu.stanford.smi.protegex.owl.ui.individuals
MultiSlotPanel(BrowserSlotPattern, Cls) - Constructor for class edu.stanford.smi.protegex.owl.ui.individuals.MultiSlotPanel
MultiWidgetPropertyWidget - Class in edu.stanford.smi.protegex.owl.ui.widget
  An AbstractPropertyWidget that allows to toggle between various nested Widgets using a JTabbedPane.
MultiWidgetPropertyWidget() - Constructor for class edu.stanford.smi.protegex.owl.ui.widget.MultiWidgetPropertyWidget
  Constructs a new MultiWidgetPropertyWidget.
mustEdit(RDFResource, RDFProperty, Object) - Method in class edu.stanford.smi.protegex.owl.ui.editors.DateTimeValueEditor
mustEdit(RDFResource, RDFProperty, Object) - Method in class edu.stanford.smi.protegex.owl.ui.editors.DateValueEditor
mustEdit(RDFResource, RDFProperty, Object) - Method in interface edu.stanford.smi.protegex.owl.ui.editors.PropertyValueEditor
  Checks whether this is the only way to edit values for a certain predicate.
mustEdit(RDFResource, RDFProperty, Object) - Method in class edu.stanford.smi.protegex.owl.ui.editors.StringValueEditor
mustEdit(RDFResource, RDFProperty, Object) - Method in class edu.stanford.smi.protegex.owl.ui.editors.TimeValueEditor
MyFactory - Class in edu.stanford.smi.protegex.owlx.examples.javaDemo.model
  Generated by Protege-OWL (http://protege.stanford.edu/plugins/owl).
MyFactory(OWLModel) - Constructor for class edu.stanford.smi.protegex.owlx.examples.javaDemo.model.MyFactory

## N

N - Static variable in class edu.stanford.smi.protegex.owl.model.util.DLExpressivityChecker
NAME - Static variable in interface edu.stanford.smi.protegex.owl.ui.actions.OWLModelAction
name - Static variable in class edu.stanford.smi.protegex.owl.ui.forms.FormsNames
NAME - Static variable in class edu.stanford.smi.protegex.owl.ui.forms.ProtegeFormsNames
NAME - Static variable in class edu.stanford.smi.protegex.owl.ui.query.SPARQLResultsPanel
nameChanged(RDFResource, String) - Method in class edu.stanford.smi.protegex.owl.model.event.PropertyValueAdapter
nameChanged(FrameEvent) - Method in class edu.stanford.smi.protegex.owl.model.event.PropertyValueAdapter
  Deprecated.
nameChanged(RDFResource, String) - Method in interface edu.stanford.smi.protegex.owl.model.event.PropertyValueListener
  Called after the name of a resource has changed.
nameChanged(FrameEvent) - Method in interface edu.stanford.smi.protegex.owl.model.event.ProtegeFrameListener
  Deprecated.
NAMED_CLASS - Static variable in interface edu.stanford.smi.protegex.owl.model.OWLNames.Cls
NAMED_CLASS - Static variable in interface edu.stanford.smi.protegex.owl.model.OWLNames.ClsID
NAMED_CLASS - Static variable in interface edu.stanford.smi.protegex.owl.model.RDFSNames.Cls
NAMED_CLASS - Static variable in interface edu.stanford.smi.protegex.owl.model.RDFSNames.ClsID
NameDocumentationWidget - Class in edu.stanford.smi.protegex.owl.ui.metadata
  Deprecated. no longer encouraged
NameDocumentationWidget() - Constructor for class edu.stanford.smi.protegex.owl.ui.metadata.NameDocumentationWidget
  Deprecated.
NameMatrixColumn - Class in edu.stanford.smi.protegex.owl.ui.matrix
NameMatrixColumn() - Constructor for class edu.stanford.smi.protegex.owl.ui.matrix.NameMatrixColumn
NAMES_COUNT - Static variable in class edu.stanford.smi.protegex.owl.model.XSPNames
nameSlot - Variable in class edu.stanford.smi.protegex.owl.model.triplestore.impl.TripleStoreImpl
NAMESPACE - Static variable in class edu.stanford.smi.protegex.owl.testing.constraints.SPARQLAssertTest
NAMESPACE - Static variable in class edu.stanford.smi.protegex.owl.ui.forms.AbsoluteLayoutNames
  The namespace of the vocabulary as a resource
NAMESPACE - Static variable in class edu.stanford.smi.protegex.owl.ui.forms.FormsNames
  The namespace of the vocabulary as a resource
NAMESPACE - Static variable in class edu.stanford.smi.protegex.owl.ui.forms.ProtegeFormsNames
  The namespace of the vocabulary as a resource
NAMESPACE - Static variable in class edu.stanford.smi.protegex.owl.ui.profiles.OWLProfiles
  The namespace of the vocabulary as a resource
NAMESPACE_COLUMN - Static variable in class edu.stanford.smi.protegex.owl.ui.metadatatab.imports.wizard.AddedPrefixesTableModel
NAMESPACE_PREFIX_SEPARATOR - Static variable in class edu.stanford.smi.protegex.owl.database.OWLDatabaseKnowledgeBaseFactory
namespaceChanged(String, String, String) - Method in class edu.stanford.smi.protegex.owl.model.NamespaceManagerAdapter
namespaceChanged(String, String, String) - Method in interface edu.stanford.smi.protegex.owl.model.NamespaceManagerListener
namespaceEndsWithSeparator(String) - Static method in class edu.stanford.smi.protegex.owl.jena.Jena
NamespaceManager - Interface in edu.stanford.smi.protegex.owl.model
  An interface for objects capable of mapping true URI namespaces into their prefixed (e.g., "owl") and vice-versa.
NamespaceManagerAdapter - Class in edu.stanford.smi.protegex.owl.model
  An empty implementation of the NamespaceManagerListener interface.
NamespaceManagerAdapter() - Constructor for class edu.stanford.smi.protegex.owl.model.NamespaceManagerAdapter
NamespaceManagerListener - Interface in edu.stanford.smi.protegex.owl.model
  An interface for listeners of NamespaceKnowledgeBases.
NamespaceMap - Interface in edu.stanford.smi.protegex.owl.model
  An interface for objects capable of mapping true URI namespaces into their prefixed (e.g., "owl") and vice-versa.
NamespacesTableColumns - Interface in edu.stanford.smi.protegex.owl.ui.metadatatab
NamespaceUtil - Class in edu.stanford.smi.protegex.owl.model
NamespaceUtil() - Constructor for class edu.stanford.smi.protegex.owl.model.NamespaceUtil
narrowFrameStore - Variable in class edu.stanford.smi.protegex.owl.model.triplestore.impl.TripleStoreImpl
NativeValueComparator - Class in edu.stanford.smi.protegex.owl.writer.rdfxml.rdfwriter
NativeValueComparator() - Constructor for class edu.stanford.smi.protegex.owl.writer.rdfxml.rdfwriter.NativeValueComparator
NativeWriterComparator - Class in edu.stanford.smi.protegex.owl.writer.rdfxml.rdfwriter
NativeWriterComparator() - Constructor for class edu.stanford.smi.protegex.owl.writer.rdfxml.rdfwriter.NativeWriterComparator
navigateTo(RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.classform.component.property.PropertyFormTable
navigateTo(RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.clsproperties.PropertyRestrictionsTree
navigateTo(RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.owltable.OWLTable
navigateTo(RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.owltable.SymbolTable
navigateToResource(RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.cls.AssertedClassesPanel
navigateToResource(RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.existential.ExistentialTreePanel
navigateToResource(RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.explorer.ExplorerTreePanel
navigateToResource(RDFResource) - Method in interface edu.stanford.smi.protegex.owl.ui.navigation.NavigationHistorySelectable
  Performs the selection in the associated component(s).
navigateToResource(RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.navigation.TabNavigationHistorySelectable
navigateToResource(RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.subsumption.AssertedSubsumptionTreePanel
navigateToResource(RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.subsumption.HiddenClassesPanel
navigateToResource(RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.subsumption.InferredSubsumptionTreePanel
NavigationHistoryManager - Class in edu.stanford.smi.protegex.owl.ui.navigation
  An object that manages the navigation history across in a certain context.
NavigationHistoryManager(NavigationHistorySelectable, OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.ui.navigation.NavigationHistoryManager
  Constructs a new NavigationHistoryManager.
NavigationHistoryPanel - Class in edu.stanford.smi.protegex.owl.ui.navigation
  A JPanel to drive the selection associated to a NavigationHistoryManager.
NavigationHistoryPanel(NavigationHistoryManager) - Constructor for class edu.stanford.smi.protegex.owl.ui.navigation.NavigationHistoryPanel
NavigationHistorySelectable - Interface in edu.stanford.smi.protegex.owl.ui.navigation
  A visual user interface component that provides a navigation history.
NavigationHistoryTabWidget - Interface in edu.stanford.smi.protegex.owl.ui.navigation
NECESSARY - Static variable in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTableItem
NestedClass() - Method in class edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxParser
NEW_KNOWLEDGE_BASE - Static variable in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGVocabulary.Management
NewOwlProjectCreator - Class in edu.stanford.smi.protegex.owl.jena.creator
NewOwlProjectCreator() - Constructor for class edu.stanford.smi.protegex.owl.jena.creator.NewOwlProjectCreator
NewOwlProjectCreator(JenaKnowledgeBaseFactory) - Constructor for class edu.stanford.smi.protegex.owl.jena.creator.NewOwlProjectCreator
NewRestrictionTreeNode - Class in edu.stanford.smi.protegex.owl.ui.clsproperties
NewRestrictionTreeNode(Cls, PropertyRestrictionsTree) - Constructor for class edu.stanford.smi.protegex.owl.ui.clsproperties.NewRestrictionTreeNode
newToken(int) - Static method in class edu.stanford.smi.protegex.owl.model.classparser.compact.Token
  Returns a new Token object, by default.
newToken(int) - Static method in class edu.stanford.smi.protegex.owl.model.classparser.dl.Token
  Returns a new Token object, by default.
newToken(int) - Static method in class edu.stanford.smi.protegex.owl.model.classparser.manchester.Token
  Returns a new Token object, by default.
next() - Method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DefaultDIGQueryResponseIterator
next - Variable in class edu.stanford.smi.protegex.owl.model.classparser.compact.Token
  A reference to the next regular (non-special) token from the input stream.
next - Variable in class edu.stanford.smi.protegex.owl.model.classparser.dl.Token
  A reference to the next regular (non-special) token from the input stream.
next - Variable in class edu.stanford.smi.protegex.owl.model.classparser.manchester.Token
  A reference to the next regular (non-special) token from the input stream.
next() - Method in interface edu.stanford.smi.protegex.owl.model.query.QueryResults
  Gets the next results, where each result is a Map from variables to bindings.
next() - Method in class edu.stanford.smi.protegex.owl.model.query.SPARQLQueryResults
nextCharBuf - Variable in class edu.stanford.smi.protegex.owl.model.classparser.compact.JavaCharStream
nextCharBuf - Variable in class edu.stanford.smi.protegex.owl.model.classparser.dl.JavaCharStream
nextCharBuf - Variable in class edu.stanford.smi.protegex.owl.model.classparser.manchester.JavaCharStream
nextCharInd - Variable in class edu.stanford.smi.protegex.owl.model.classparser.compact.JavaCharStream
nextCharInd - Variable in class edu.stanford.smi.protegex.owl.model.classparser.dl.JavaCharStream
nextCharInd - Variable in class edu.stanford.smi.protegex.owl.model.classparser.manchester.JavaCharStream
nextCouldBeClass - Variable in exception edu.stanford.smi.protegex.owl.model.classparser.OWLClassParseException
nextCouldBeCls - Static variable in class edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParser
nextCouldBeDatatypeName - Static variable in class edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParser
nextCouldBeDatatypeName - Variable in exception edu.stanford.smi.protegex.owl.model.classparser.OWLClassParseException
nextCouldBeIndividual - Variable in exception edu.stanford.smi.protegex.owl.model.classparser.OWLClassParseException
nextCouldBeInstance - Static variable in class edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParser
nextCouldBeProperty - Variable in exception edu.stanford.smi.protegex.owl.model.classparser.OWLClassParseException
nextCouldBeSlot - Static variable in class edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParser
nextPressed() - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.imports.wizard.FileImportPage
nextPressed() - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.imports.wizard.ImportTypePage
nextPressed() - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.imports.wizard.RepositoryImportPage
nextPressed() - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.imports.wizard.URLImportPage
nextPressed() - Method in class edu.stanford.smi.protegex.owl.ui.repository.wizard.SelectRepositoryTypeWizardPage
nextPressed() - Method in class edu.stanford.smi.protegex.owl.ui.wizard.OWLWizardPage
nextState(ServerCachedState, Frame, Slot, Frame) - Method in class edu.stanford.smi.protegex.owl.server.OwlStateMachine
NIL - Static variable in interface edu.stanford.smi.protegex.owl.model.RDFNames.Instance
NO_SUBSUMPTION_RELATIONSHIP - Static variable in interface edu.stanford.smi.protegex.owl.inference.protegeowl.ProtegeOWLReasoner
  Deprecated.
NoCardiRestrictionOnTransitivePropertiesOWLDLTest - Class in edu.stanford.smi.protegex.owl.testing.owldl
NoCardiRestrictionOnTransitivePropertiesOWLDLTest() - Constructor for class edu.stanford.smi.protegex.owl.testing.owldl.NoCardiRestrictionOnTransitivePropertiesOWLDLTest
NoClassesOrPropertiesInEnumerationsOWLDLTest - Class in edu.stanford.smi.protegex.owl.testing.owldl
NoClassesOrPropertiesInEnumerationsOWLDLTest() - Constructor for class edu.stanford.smi.protegex.owl.testing.owldl.NoClassesOrPropertiesInEnumerationsOWLDLTest
NoImportOfSystemOntologiesOWLDLTest - Class in edu.stanford.smi.protegex.owl.testing.owldl
NoImportOfSystemOntologiesOWLDLTest() - Constructor for class edu.stanford.smi.protegex.owl.testing.owldl.NoImportOfSystemOntologiesOWLDLTest
NoMetaclassOWLDLTest - Class in edu.stanford.smi.protegex.owl.testing.owldl
NoMetaclassOWLDLTest() - Constructor for class edu.stanford.smi.protegex.owl.testing.owldl.NoMetaclassOWLDLTest
NON_NEGATIVE_INTEGER - Static variable in interface edu.stanford.smi.protegex.owl.model.XSDNames
NONE_REASONER - Static variable in class edu.stanford.smi.protegex.owl.inference.protegeowl.ReasonerPluginMenuManager
NoopProgressDisplay - Class in edu.stanford.smi.protegex.owl.model.impl
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Sep 13, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
NoopProgressDisplay() - Constructor for class edu.stanford.smi.protegex.owl.model.impl.NoopProgressDisplay
NoPropertiesWithClassAsRangeOWLDLTest - Class in edu.stanford.smi.protegex.owl.testing.owldl
NoPropertiesWithClassAsRangeOWLDLTest() - Constructor for class edu.stanford.smi.protegex.owl.testing.owldl.NoPropertiesWithClassAsRangeOWLDLTest
NORMALIZE_SPACE - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLConstants.BuiltIns
  Deprecated.
NORMALIZE_SPACE - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.CoreBuiltIns
NoSubclassesOfRDFClassesOWLDLTest - Class in edu.stanford.smi.protegex.owl.testing.owldl
NoSubclassesOfRDFClassesOWLDLTest() - Constructor for class edu.stanford.smi.protegex.owl.testing.owldl.NoSubclassesOfRDFClassesOWLDLTest
NoSuperOrSubPropertiesOfAnnotationPropertiesTest - Class in edu.stanford.smi.protegex.owl.testing.owldl
NoSuperOrSubPropertiesOfAnnotationPropertiesTest() - Constructor for class edu.stanford.smi.protegex.owl.testing.owldl.NoSuperOrSubPropertiesOfAnnotationPropertiesTest
NOT - Static variable in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGVocabulary.Language
NOT - Static variable in interface edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParserConstants
NOT_EMPTY_PROPERTY_URI - Static variable in class edu.stanford.smi.protegex.owl.testing.constraints.SPARQLAssertTest
NOT_EQUAL - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLConstants.BuiltIns
  Deprecated.
NOT_EQUAL - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.CoreBuiltIns
NOT_SUITABLE - Static variable in interface edu.stanford.smi.protegex.owl.ui.widget.OWLWidgetMetadata
  Indicates that this widget is not suitable for the given class/property combination
NotContains - Static variable in class edu.stanford.smi.protegex.owl.swrl.model.SQWRLNames
NotElement - Static variable in class edu.stanford.smi.protegex.owl.swrl.model.SQWRLNames
NotEqual - Static variable in class edu.stanford.smi.protegex.owl.swrl.model.SQWRLNames
NotFirst - Static variable in class edu.stanford.smi.protegex.owl.swrl.model.SQWRLNames
NotFirstN - Static variable in class edu.stanford.smi.protegex.owl.swrl.model.SQWRLNames
NotGreatest - Static variable in class edu.stanford.smi.protegex.owl.swrl.model.SQWRLNames
NotGreatestN - Static variable in class edu.stanford.smi.protegex.owl.swrl.model.SQWRLNames
NOTHING - Static variable in interface edu.stanford.smi.protegex.owl.model.OWLNames.Cls
notifyNodeChanged() - Method in class edu.stanford.smi.protegex.owl.ui.cls.ClassTreeNode
notifyNodeChanged() - Method in class edu.stanford.smi.protegex.owl.ui.cls.ClassTreeWithBrowserTextNode
notifyNodeChanged() - Method in class edu.stanford.smi.protegex.owl.ui.existential.ExistentialTreeNode
notifyNodeChanged() - Method in class edu.stanford.smi.protegex.owl.ui.subsumption.SubsumptionTreeNode
notifyPropertyChangeListeners(String, Object, Object) - Method in class edu.stanford.smi.protegex.owl.ui.actions.AbstractOWLModelAction
notifyPropertyChangeListeners(String, Object, Object) - Method in interface edu.stanford.smi.protegex.owl.ui.actions.OWLModelAction
notifyPropertyChangeListeners(String, Object, Object) - Method in class edu.stanford.smi.protegex.owl.ui.testing.AbstractOWLModelTestAction
notifyResultsUpdated() - Method in class edu.stanford.smi.protegex.owl.ui.search.finder.BasicFind
notifySearchCancelled() - Method in class edu.stanford.smi.protegex.owl.ui.search.finder.BasicFind
notifySearchComplete() - Method in class edu.stanford.smi.protegex.owl.ui.search.finder.BasicFind
notifySearchStarted() - Method in class edu.stanford.smi.protegex.owl.ui.search.finder.BasicFind
notifySelectionListeners() - Method in class edu.stanford.smi.protegex.owl.ui.navigation.TabNavigationHistorySelectable
notifySelectionListeners() - Method in class edu.stanford.smi.protegex.owl.ui.properties.OWLPropertyHierarchiesPanel
notifySelectionListeners() - Method in class edu.stanford.smi.protegex.owl.ui.resourcedisplay.ResourceDisplay
notifyVisibilityChanged(Frame) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not needed
NotIntersects - Static variable in class edu.stanford.smi.protegex.owl.swrl.model.SQWRLNames
NotIsEmpty - Static variable in class edu.stanford.smi.protegex.owl.swrl.model.SQWRLNames
NotLast - Static variable in class edu.stanford.smi.protegex.owl.swrl.model.SQWRLNames
NotLastN - Static variable in class edu.stanford.smi.protegex.owl.swrl.model.SQWRLNames
NotLeast - Static variable in class edu.stanford.smi.protegex.owl.swrl.model.SQWRLNames
NotLeastN - Static variable in class edu.stanford.smi.protegex.owl.swrl.model.SQWRLNames
NotNth - Static variable in class edu.stanford.smi.protegex.owl.swrl.model.SQWRLNames
NotNthGreatest - Static variable in class edu.stanford.smi.protegex.owl.swrl.model.SQWRLNames
NotNthGreatestSlice - Static variable in class edu.stanford.smi.protegex.owl.swrl.model.SQWRLNames
NotNthLast - Static variable in class edu.stanford.smi.protegex.owl.swrl.model.SQWRLNames
NotNthLastSlice - Static variable in class edu.stanford.smi.protegex.owl.swrl.model.SQWRLNames
NotNthSlice - Static variable in class edu.stanford.smi.protegex.owl.swrl.model.SQWRLNames
NS - Static variable in class edu.stanford.smi.protegex.owl.model.ProtegeNames
  Deprecated. use `ProtegeNames.PROTEGE_OWL_NAMESPACE`
NS - Static variable in class edu.stanford.smi.protegex.owl.model.XSPNames
NS - Static variable in class edu.stanford.smi.protegex.owl.ui.forms.AbsoluteLayoutNames
  The namespace of the vocabulary as a string
NS - Static variable in class edu.stanford.smi.protegex.owl.ui.forms.FormsNames
  The namespace of the vocabulary as a string
NS - Static variable in class edu.stanford.smi.protegex.owl.ui.forms.ProtegeFormsNames
  The namespace of the vocabulary as a string
NS - Static variable in class edu.stanford.smi.protegex.owl.ui.profiles.OWLProfiles
  The namespace of the vocabulary as a string
Nth - Static variable in class edu.stanford.smi.protegex.owl.swrl.model.SQWRLNames
NthGreatest - Static variable in class edu.stanford.smi.protegex.owl.swrl.model.SQWRLNames
NthGreatestSlice - Static variable in class edu.stanford.smi.protegex.owl.swrl.model.SQWRLNames
NthLast - Static variable in class edu.stanford.smi.protegex.owl.swrl.model.SQWRLNames
NthLastSlice - Static variable in class edu.stanford.smi.protegex.owl.swrl.model.SQWRLNames
NthSlice - Static variable in class edu.stanford.smi.protegex.owl.swrl.model.SQWRLNames
NullWizardPage - Class in edu.stanford.smi.protegex.owl.ui.metadatatab.imports.wizard
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Oct 1, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
NullWizardPage(ImportWizard) - Constructor for class edu.stanford.smi.protegex.owl.ui.metadatatab.imports.wizard.NullWizardPage
NUM_COLUMNS - Static variable in class edu.stanford.smi.protegex.owl.ui.search.finder.FindResult
NumericFacetsPanel - Class in edu.stanford.smi.protegex.owl.ui.properties.range
  A JPanel to edit the XML Schema datatype facets for a numeric type.
NumericFacetsPanel(OWLRangeWidget) - Constructor for class edu.stanford.smi.protegex.owl.ui.properties.range.NumericFacetsPanel

## O

O - Static variable in class edu.stanford.smi.protegex.owl.model.util.DLExpressivityChecker
OBJECT - Static variable in interface edu.stanford.smi.protegex.owl.model.RDFNames.Slot
OBJECT_PROPERTY - Static variable in interface edu.stanford.smi.protegex.owl.model.OWLNames.Cls
OBJECT_PROPERTY_ID - Static variable in interface edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxParserConstants
ObjectProperty() - Method in class edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxParser
ObjectProperty_Type - Static variable in class edu.stanford.smi.protegex.owl.ui.profiles.OWLProfiles
ObjectPropertyExamples - Class in edu.stanford.smi.protegex.owlx.examples
ObjectPropertyExamples() - Constructor for class edu.stanford.smi.protegex.owlx.examples.ObjectPropertyExamples
ok() - Method in class edu.stanford.smi.protegex.owl.javacode.JavaCodeGeneratorPanel
ok() - Method in class edu.stanford.smi.protegex.owl.ui.menu.code.EMFPanel
ok() - Method in class edu.stanford.smi.protegex.owl.ui.menu.preferences.PreferencesPanel
okToCreateDatabase() - Method in class edu.stanford.smi.protegex.owl.database.OWLDatabaseWizardPage
OldRestrictionTreeNode - Class in edu.stanford.smi.protegex.owl.ui.clsproperties
OldRestrictionTreeNode(PropertyRestrictionsTree, OWLRestriction, RDFSClass) - Constructor for class edu.stanford.smi.protegex.owl.ui.clsproperties.OldRestrictionTreeNode
ON_PROPERTY - Static variable in interface edu.stanford.smi.protegex.owl.model.OWLNames.Slot
onCancel() - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.imports.wizard.ImportVerificationPage
onDirectTypeAdded(Cls) - Method in class edu.stanford.smi.protegex.owl.ui.resourcedisplay.ResourceDisplay
onDirectTypeRemoved(Cls) - Method in class edu.stanford.smi.protegex.owl.ui.resourcedisplay.ResourceDisplay
ONE_OF - Static variable in interface edu.stanford.smi.protegex.owl.model.classparser.compact.CompactParserConstants
ONE_OF - Static variable in interface edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxParserConstants
ONE_OF - Static variable in interface edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParserConstants
ONE_OF - Static variable in interface edu.stanford.smi.protegex.owl.model.OWLNames.Slot
OneOfValues() - Method in class edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParser
onFinish() - Method in class edu.stanford.smi.protegex.owl.database.InitOWLDatabaseFromFileWizardPage
onFinish() - Method in class edu.stanford.smi.protegex.owl.database.OWLDatabaseWizardPage
onFinish() - Method in class edu.stanford.smi.protegex.owl.ui.jena.AbstractOWLFilesWizardPage
onFinish() - Method in class edu.stanford.smi.protegex.owl.ui.menu.OWLViewWizardPage
onFinish() - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.imports.emptyimport.EmptyImportWizard
onFinish() - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.imports.emptyimport.EmptyOntologyURIPage
onFinish() - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.imports.emptyimport.LocalFileWizardPage
onFinish() - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.OntologyURIWizardPage
onFinish() - Method in class edu.stanford.smi.protegex.owl.ui.profiles.ProfileSelectionWizardPage
onProjectPathChange(String, String) - Method in class edu.stanford.smi.protegex.owl.jena.JenaKnowledgeBaseSourcesEditor
onProjectPathChange(String, String) - Method in class edu.stanford.smi.protegex.owl.ui.jena.AbstractOWLFilesWizardPage
onSelectionChange() - Method in class edu.stanford.smi.protegex.owl.ui.individuals.AssertedInstancesListPanel
onSelectionChange() - Method in class edu.stanford.smi.protegex.owl.ui.properties.OWLSuperpropertiesPanel
ONT_LANGUAGE_GROUP - Static variable in interface edu.stanford.smi.protegex.owl.ui.actions.OWLModelActionConstants
ONT_POLICY_PROPERTY - Static variable in class edu.stanford.smi.protegex.owl.jena.Jena
onTemplateFacetValueChanged(Cls, Slot, Facet) - Method in class edu.stanford.smi.protegex.owl.ui.widget.OWLFormWidget
onTemplateSlotAdded(Cls, Slot) - Method in class edu.stanford.smi.protegex.owl.ui.widget.OWLFormWidget
onTemplateSlotRemoved(Cls, Slot) - Method in class edu.stanford.smi.protegex.owl.ui.widget.OWLFormWidget
OntModelProvider - Interface in edu.stanford.smi.protegex.owl.jena
  An interface that can be implemented by all OWLModel implementations which provide a Jena OntModel.
ONTOLOGY - Static variable in interface edu.stanford.smi.protegex.owl.model.OWLNames.Cls
ONTOLOGY_PREFIXES - Static variable in interface edu.stanford.smi.protegex.owl.model.OWLNames.Slot
ontologyInputSource - Variable in class edu.stanford.smi.protegex.owl.database.CreateOWLDatabaseFromFileProjectPlugin
OntologyNameExtractor - Class in edu.stanford.smi.protegex.owl.repository.util
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Sep 12, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm

  A utility class that extracts the name (URI) of an ontology from an OWL file.
OntologyNameExtractor(InputStreamSource) - Constructor for class edu.stanford.smi.protegex.owl.repository.util.OntologyNameExtractor
  Constructs an `OntologyNameExtractor` that should obtain the name of an ontology which can be read via the specified input stream.
OntologyNameExtractor.OntologyDeclarationFoundException - Exception in edu.stanford.smi.protegex.owl.repository.util
OntologyNameExtractor.OntologyDeclarationFoundException() - Constructor for exception edu.stanford.smi.protegex.owl.repository.util.OntologyNameExtractor.OntologyDeclarationFoundException
OntologyURIDefaultSettingsPanel - Class in edu.stanford.smi.protegex.owl.ui.metadatatab
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Sep 30, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
OntologyURIDefaultSettingsPanel(boolean) - Constructor for class edu.stanford.smi.protegex.owl.ui.metadatatab.OntologyURIDefaultSettingsPanel
OntologyURIPanel - Class in edu.stanford.smi.protegex.owl.ui.metadatatab
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Oct 5, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
OntologyURIPanel(boolean, boolean) - Constructor for class edu.stanford.smi.protegex.owl.ui.metadatatab.OntologyURIPanel
OntologyURIWidget - Class in edu.stanford.smi.protegex.owl.ui.metadatatab
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Sep 27, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
OntologyURIWidget() - Constructor for class edu.stanford.smi.protegex.owl.ui.metadatatab.OntologyURIWidget
OntologyURIWizardPage - Class in edu.stanford.smi.protegex.owl.ui.metadatatab
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Sep 27, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
OntologyURIWizardPage(Wizard, OWLFilesPlugin) - Constructor for class edu.stanford.smi.protegex.owl.ui.metadatatab.OntologyURIWizardPage
openNodesIfPossible() - Method in class edu.stanford.smi.protegex.owl.ui.clsproperties.PropertyRestrictionsTree
  Opens the restriction nodes if there is enough space in the visible area.
OPENPAR - Static variable in interface edu.stanford.smi.protegex.owl.model.classparser.compact.CompactParserConstants
OPENPAR - Static variable in interface edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxParserConstants
OPENPAR - Static variable in interface edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParserConstants
OPENSQPAR - Static variable in interface edu.stanford.smi.protegex.owl.model.classparser.compact.CompactParserConstants
OPENSQPAR - Static variable in interface edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxParserConstants
OPENSQPAR - Static variable in interface edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParserConstants
OPERATION_ONTOLOGY_TAB_WRITE - Static variable in class edu.stanford.smi.protegex.owl.server.metaproject.OwlMetaProjectConstants
OPERATION_PROPERTY_TAB_WRITE - Static variable in class edu.stanford.smi.protegex.owl.server.metaproject.OwlMetaProjectConstants
OPERATOR - Static variable in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLAllValuesFrom
  The unicode operator symbol for this kind of restriction
OPERATOR - Static variable in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLCardinality
  The unicode operator symbol for this kind of restriction
OPERATOR - Static variable in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLComplementClass
  The unicode operator symbol for this kind of class
OPERATOR - Static variable in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLHasValue
  The unicode operator symbol for this kind of restriction
OPERATOR - Static variable in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLIntersectionClass
  The unicode operator symbol for this kind of class
OPERATOR - Static variable in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLMaxCardinality
  The unicode operator symbol for this kind of restriction
OPERATOR - Static variable in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLMinCardinality
OPERATOR - Static variable in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLSomeValuesFrom
  The unicode operator symbol for this kind of restriction
OPERATOR - Static variable in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLUnionClass
  The unicode operator symbol for this kind of class
OPTION_CANCEL - Static variable in interface edu.stanford.smi.protegex.owl.ui.dialogs.ModalDialogFactory
OPTION_CLOSE - Static variable in interface edu.stanford.smi.protegex.owl.ui.dialogs.ModalDialogFactory
OPTION_NO - Static variable in interface edu.stanford.smi.protegex.owl.ui.dialogs.ModalDialogFactory
OPTION_OK - Static variable in interface edu.stanford.smi.protegex.owl.ui.dialogs.ModalDialogFactory
OPTION_YES - Static variable in interface edu.stanford.smi.protegex.owl.ui.dialogs.ModalDialogFactory
optional - Static variable in class edu.stanford.smi.protegex.owl.ui.forms.AbsoluteFormsGenerator
OPTIONS - Static variable in class edu.stanford.smi.protegex.owl.ui.repository.UnresolvedImportUIHandler
OR - Static variable in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGVocabulary.Language
OR - Static variable in interface edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParserConstants
OrderBy - Static variable in class edu.stanford.smi.protegex.owl.swrl.model.SQWRLNames
OrderByDescending - Static variable in class edu.stanford.smi.protegex.owl.swrl.model.SQWRLNames
orderedKeys - Variable in class edu.stanford.smi.protegex.owl.ui.search.finder.ResultsViewModelFind
originalXMLBase - Variable in class edu.stanford.smi.protegex.owl.model.triplestore.impl.TripleStoreImpl
OverlayIcon - Class in edu.stanford.smi.protegex.owl.ui.icons
OverlayIcon(String, int, int, String, int, int) - Constructor for class edu.stanford.smi.protegex.owl.ui.icons.OverlayIcon
OverlayIcon(String, int, int, String, int, int, Class) - Constructor for class edu.stanford.smi.protegex.owl.ui.icons.OverlayIcon
OverlayIcon(Image, int, int, Image, int, int) - Constructor for class edu.stanford.smi.protegex.owl.ui.icons.OverlayIcon
OverlayIcon(Image, int, int, Image, int, int, int, int) - Constructor for class edu.stanford.smi.protegex.owl.ui.icons.OverlayIcon
OWL2OWLCopier - Class in edu.stanford.smi.protegex.owl.storage
  A KnowledgeBaseCopier that can be used to generate a Jena OntModel from an existing OWLModel (especially from a database).
OWL2OWLCopier(OWLModel, OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.storage.OWL2OWLCopier
OWL_ALL_VALUES_FROM - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
OWL_ANNOTATION_PROPERTY_FRAME - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
OWL_BUILD_PROPERTY - Static variable in class edu.stanford.smi.protegex.owl.ui.menu.OWLBackwardsCompatibilityProjectFixups
OWL_CARDINALITY - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
OWL_CLASS - Static variable in interface edu.stanford.smi.protegex.owl.model.OWLNames.Cls
OWL_COMPLEMENT_CLASS - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
OWL_DATABASE_INCLUSION - Static variable in class edu.stanford.smi.protegex.owl.ui.menu.OWLBackwardsCompatibilityProjectFixups
OWL_DATATYPE_ANNOTATION_PROPERTY - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
OWL_DATATYPE_PROPERTY - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
OWL_DATATYPE_PROPERTY_INHERITED - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
OWL_DISJOINT_CLASSES - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
OWL_DL - Static variable in class edu.stanford.smi.protegex.owl.jena.Jena
OWL_DL - Static variable in interface edu.stanford.smi.protegex.owl.jena.OntModelProvider
OWL_DL - Static variable in class edu.stanford.smi.protegex.owl.ui.profiles.OWLProfiles
OWL_ENUMERATED_CLASS - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
OWL_EQUIVALENT_CLASS - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
OWL_FILE_LANGUAGE_PROPERTY - Static variable in class edu.stanford.smi.protegex.owl.jena.JenaKnowledgeBaseFactory
OWL_FILE_URI_PROPERTY - Static variable in class edu.stanford.smi.protegex.owl.jena.JenaKnowledgeBaseFactory
OWL_FULL - Static variable in class edu.stanford.smi.protegex.owl.jena.Jena
OWL_FULL - Static variable in interface edu.stanford.smi.protegex.owl.jena.OntModelProvider
OWL_Full - Static variable in class edu.stanford.smi.protegex.owl.ui.profiles.OWLProfiles
OWL_HAS_VALUE - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
OWL_INTERSECTION_CLASS - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
OWL_LITE - Static variable in class edu.stanford.smi.protegex.owl.jena.Jena
OWL_LITE - Static variable in interface edu.stanford.smi.protegex.owl.jena.OntModelProvider
OWL_Lite - Static variable in class edu.stanford.smi.protegex.owl.ui.profiles.OWLProfiles
OWL_MAJOR_BUILD_PROPERTY - Static variable in class edu.stanford.smi.protegex.owl.ui.menu.OWLBackwardsCompatibilityProjectFixups
OWL_MAX_CARDINALITY - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
OWL_MENU - Static variable in class edu.stanford.smi.protegex.owl.ui.actions.AbstractOWLModelAction
OWL_MENU - Static variable in class edu.stanford.smi.protegex.owl.ui.widget.OWLUI
  Deprecated. use constant from AbstractOWLModelAction
OWL_MIN_CARDINALITY - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
OWL_MODEL_EXPAND_SHORT_NAME_IN_METHODS - Static variable in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
OWL_MODEL_IMPORT_NAMESPACES - Static variable in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
OWL_MODEL_INIT_DEFAULTS_AT_CREATION - Static variable in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
  If the value of this property key is true in protege.properties, the default mechanism of the underlying frame model will be used at class, property and individual creation time.
OWL_NAMESPACE - Static variable in interface edu.stanford.smi.protegex.owl.model.OWLNames
OWL_OBJECT_ANNOTATION_PROPERTY - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
OWL_OBJECT_PROPERTY - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
OWL_OBJECT_PROPERTY_INHERITED - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
OWL_ONTOLOGY_POINTER_CLASS - Static variable in interface edu.stanford.smi.protegex.owl.model.OWLNames.Cls
OWL_ONTOLOGY_POINTER_PROPERTY - Static variable in interface edu.stanford.smi.protegex.owl.model.OWLNames.Slot
OWL_PREFIX - Static variable in interface edu.stanford.smi.protegex.owl.model.OWLNames
OWL_RESTRICTION - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
OWL_SOME_VALUES_FROM - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
OWL_TESTS_GROUP - Static variable in interface edu.stanford.smi.protegex.owl.ui.actions.OWLModelActionConstants
OWL_UNION_CLASS - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
OWLAllDifferent - Interface in edu.stanford.smi.protegex.owl.model
  An RDFResource that represents a block of owl:AllDifferent individuals.
OWLAllValuesFrom(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParser
OWLAllValuesFrom - Interface in edu.stanford.smi.protegex.owl.model
  An owl:allValueFrom restriction.
OWLAllValuesFromDatatypePart() - Method in class edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxParser
OWLAllValuesFromObjectPart() - Method in class edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxParser
OWLAllValuesFromRestriction() - Method in class edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxParser
OWLAnnotationPropertySubpropertyPane - Class in edu.stanford.smi.protegex.owl.ui.properties
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Jan 17, 2006

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
OWLAnnotationPropertySubpropertyPane(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.ui.properties.OWLAnnotationPropertySubpropertyPane
OWLAnnotationPropertySubpropertyRoot - Class in edu.stanford.smi.protegex.owl.ui.properties
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Jan 17, 2006

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
OWLAnnotationPropertySubpropertyRoot(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.ui.properties.OWLAnnotationPropertySubpropertyRoot
OWLAnonymousClass - Interface in edu.stanford.smi.protegex.owl.model
  The base class of all anonymous OWL class types.
OWLBackwardsCompatibilityProjectFixups - Class in edu.stanford.smi.protegex.owl.ui.menu
  Repairs invalid forms from old pprj files.
OWLBackwardsCompatibilityProjectFixups() - Constructor for class edu.stanford.smi.protegex.owl.ui.menu.OWLBackwardsCompatibilityProjectFixups
OWLBrowserSlotPattern - Class in edu.stanford.smi.protegex.owl.util
  The OWL browser slot pattern used to display the name of OWL elements.
OWLBrowserSlotPattern(BrowserSlotPattern) - Constructor for class edu.stanford.smi.protegex.owl.util.OWLBrowserSlotPattern
OWLBrowserSlotPattern(List) - Constructor for class edu.stanford.smi.protegex.owl.util.OWLBrowserSlotPattern
OWLBrowserSlotPattern(Slot) - Constructor for class edu.stanford.smi.protegex.owl.util.OWLBrowserSlotPattern
OWLCardinality(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParser
OWLCardinality - Interface in edu.stanford.smi.protegex.owl.model
  A class representing an owl:cardinality restriction.
OWLCardinalityBase(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParser
OWLCardinalityBase - Interface in edu.stanford.smi.protegex.owl.model
  The base interface of the various cardinality restrictions.
OWLCardinalityDatatypePart() - Method in class edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxParser
OWLCardinalityObjectPart() - Method in class edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxParser
OWLCardinalityRestriction() - Method in class edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxParser
OWLClass - Interface in edu.stanford.smi.protegex.owl.model
  The common base interface for OWLNamedClass and OWLAnonymousClass.
OWLClass_Type - Static variable in class edu.stanford.smi.protegex.owl.ui.profiles.OWLProfiles
OWLClassDisplay - Interface in edu.stanford.smi.protegex.owl.model.classdisplay
  An interface for objects that can display (and parse) class expressions.
OWLClassDisplayFactory - Class in edu.stanford.smi.protegex.owl.model.classdisplay
  A Singleton object that manages the available OWLClassDisplays.
OWLClassDisplayFactory() - Constructor for class edu.stanford.smi.protegex.owl.model.classdisplay.OWLClassDisplayFactory
OWLClassesTab - Class in edu.stanford.smi.protegex.owl.ui.cls
  A tab for editing OWL/RDF classes, consisting of a class hierarchy tree and a resource display.
OWLClassesTab() - Constructor for class edu.stanford.smi.protegex.owl.ui.cls.OWLClassesTab
OWLClassesTreeDragSourceListener - Class in edu.stanford.smi.protegex.owl.ui.cls
  A special handler of drag and drop for OWL classes: The core Protege one would remove named superclasses even if they were part of an equivalent intersection.
OWLClassesTreeDragSourceListener() - Constructor for class edu.stanford.smi.protegex.owl.ui.cls.OWLClassesTreeDragSourceListener
OWLClassParseException - Exception in edu.stanford.smi.protegex.owl.model.classparser
  An Exception thrown by an OWLClassParser, providing additional information that can be used to guide user input.
OWLClassParseException(String) - Constructor for exception edu.stanford.smi.protegex.owl.model.classparser.OWLClassParseException
OWLClassParser - Interface in edu.stanford.smi.protegex.owl.model.classparser
  An interface for objects that can be used to parse a class expression.
OWLClassUtil - Class in edu.stanford.smi.protegex.owl.ui.conditions
OWLClassUtil() - Constructor for class edu.stanford.smi.protegex.owl.ui.conditions.OWLClassUtil
OWLCompactParserUtil - Class in edu.stanford.smi.protegex.owl.model.classparser.compact
OWLCompactParserUtil() - Constructor for class edu.stanford.smi.protegex.owl.model.classparser.compact.OWLCompactParserUtil
OWLComplementClass() - Method in class edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxParser
OWLComplementClass() - Method in class edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParser
OWLComplementClass - Interface in edu.stanford.smi.protegex.owl.model
  A OWLLogicalClass to represent a complement.
OWLCreateProjectPlugin - Interface in edu.stanford.smi.protegex.owl.jena
OwlDatabaseCreator - Class in edu.stanford.smi.protegex.owl.database.creator
OwlDatabaseCreator(boolean) - Constructor for class edu.stanford.smi.protegex.owl.database.creator.OwlDatabaseCreator
OwlDatabaseCreator(OWLDatabaseKnowledgeBaseFactory, boolean) - Constructor for class edu.stanford.smi.protegex.owl.database.creator.OwlDatabaseCreator
OwlDatabaseFromFileCreator - Class in edu.stanford.smi.protegex.owl.database.creator
OwlDatabaseFromFileCreator() - Constructor for class edu.stanford.smi.protegex.owl.database.creator.OwlDatabaseFromFileCreator
OwlDatabaseFromFileCreator(OWLDatabaseKnowledgeBaseFactory) - Constructor for class edu.stanford.smi.protegex.owl.database.creator.OwlDatabaseFromFileCreator
OWLDatabaseKnowledgeBaseFactory - Class in edu.stanford.smi.protegex.owl.database
  A DatabaseKnowledgeBaseFactory with an even longer name.
OWLDatabaseKnowledgeBaseFactory() - Constructor for class edu.stanford.smi.protegex.owl.database.OWLDatabaseKnowledgeBaseFactory
OWLDatabaseModel - Class in edu.stanford.smi.protegex.owl.database
  An AbstractOWLModel with extra support for databases.
OWLDatabaseModel(KnowledgeBaseFactory) - Constructor for class edu.stanford.smi.protegex.owl.database.OWLDatabaseModel
OWLDatabasePlugin - Interface in edu.stanford.smi.protegex.owl.database
OWLDatabaseWizardPage - Class in edu.stanford.smi.protegex.owl.database
OWLDatabaseWizardPage(Wizard, OWLDatabasePlugin) - Constructor for class edu.stanford.smi.protegex.owl.database.OWLDatabaseWizardPage
OWLDatabaseWizardPageExistingSources - Class in edu.stanford.smi.protegex.owl.database
OWLDatabaseWizardPageExistingSources(Wizard, OWLDatabasePlugin) - Constructor for class edu.stanford.smi.protegex.owl.database.OWLDatabaseWizardPageExistingSources
OWLDataRange - Interface in edu.stanford.smi.protegex.owl.model
  An RDFResource representing an owl:DataRange, i.e.
OWLDataRangeComponent - Class in edu.stanford.smi.protegex.owl.ui.properties.range
OWLDataRangeComponent(OWLRangeWidget) - Constructor for class edu.stanford.smi.protegex.owl.ui.properties.range.OWLDataRangeComponent
OWLDatatypeProperty - Interface in edu.stanford.smi.protegex.owl.model
  An OWLProperty with a primitive datatype as range.
OWLDatatypePropertySubpropertyPane - Class in edu.stanford.smi.protegex.owl.ui.properties
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Jan 17, 2006

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
OWLDatatypePropertySubpropertyPane(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.ui.properties.OWLDatatypePropertySubpropertyPane
OWLDatatypePropertySubpropertyRoot - Class in edu.stanford.smi.protegex.owl.ui.properties
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Jan 17, 2006

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
OWLDatatypePropertySubpropertyRoot(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.ui.properties.OWLDatatypePropertySubpropertyRoot
OWLDatatypePropertyTypesWidget - Static variable in class edu.stanford.smi.protegex.owl.ui.forms.ProtegeFormsNames
OWLDatatypePropertyTypesWidget - Class in edu.stanford.smi.protegex.owl.ui.properties.types
  A AbstractPropertyTypesWidget for OWLDatatypeProperties.
OWLDatatypePropertyTypesWidget() - Constructor for class edu.stanford.smi.protegex.owl.ui.properties.types.OWLDatatypePropertyTypesWidget
OWLDateTimeWidget - Class in edu.stanford.smi.protegex.owl.ui.widget
OWLDateTimeWidget() - Constructor for class edu.stanford.smi.protegex.owl.ui.widget.OWLDateTimeWidget
OWLDateTimeWidgetMetadata - Class in edu.stanford.smi.protegex.owl.ui.widget
OWLDateTimeWidgetMetadata() - Constructor for class edu.stanford.smi.protegex.owl.ui.widget.OWLDateTimeWidgetMetadata
OWLDateWidget - Class in edu.stanford.smi.protegex.owl.ui.widget
OWLDateWidget() - Constructor for class edu.stanford.smi.protegex.owl.ui.widget.OWLDateWidget
OWLDateWidgetMetadata - Class in edu.stanford.smi.protegex.owl.ui.widget
OWLDateWidgetMetadata() - Constructor for class edu.stanford.smi.protegex.owl.ui.widget.OWLDateWidgetMetadata
OWLDeleteAction - Class in edu.stanford.smi.protegex.owl.ui.actions
OWLDeleteAction(String, Selectable) - Constructor for class edu.stanford.smi.protegex.owl.ui.actions.OWLDeleteAction
OWLDeleteSimplificationFrameStore - Class in edu.stanford.smi.protegex.owl.model.framestore
  A modified DeleteSimplificationFrameStore that does not automatically delete own slot values if the domain of a slot has changed.
OWLDeleteSimplificationFrameStore() - Constructor for class edu.stanford.smi.protegex.owl.model.framestore.OWLDeleteSimplificationFrameStore
OWLDLTest - Interface in edu.stanford.smi.protegex.owl.testing
  A marker interface for OWLTests that check whether an ontology is OWL DL.
OWLDomainTable - Class in edu.stanford.smi.protegex.owl.ui.properties.domain
  A JTable to display an OWLDomainModel.
OWLDomainTable(OWLDomainTableModel) - Constructor for class edu.stanford.smi.protegex.owl.ui.properties.domain.OWLDomainTable
OWLDomainTableModel - Class in edu.stanford.smi.protegex.owl.ui.properties.domain
  A simple TableModel to list the domain of an RDFProperty.
OWLDomainTableModel(RDFProperty) - Constructor for class edu.stanford.smi.protegex.owl.ui.properties.domain.OWLDomainTableModel
OWLDomainWidget - Static variable in class edu.stanford.smi.protegex.owl.ui.forms.ProtegeFormsNames
OWLDomainWidget - Class in edu.stanford.smi.protegex.owl.ui.properties.domain
  A Widget for the domain of an RDFProperty.
OWLDomainWidget() - Constructor for class edu.stanford.smi.protegex.owl.ui.properties.domain.OWLDomainWidget
OWLEnumeratedClass() - Method in class edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxParser
OWLEnumeratedClass() - Method in class edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParser
OWLEnumeratedClass - Interface in edu.stanford.smi.protegex.owl.model
  An enumerated class which lists valid individuals as its values of the owl:oneOf property.
OWLExistentialRestriction - Interface in edu.stanford.smi.protegex.owl.model
  A common base interface for OWLHasValue and OWLSomeValuesFrom restrictions.
OWLFactoryClassType - Enum in edu.stanford.smi.protegex.owl.model.factory
OWLFilesCreateProjectPlugin - Class in edu.stanford.smi.protegex.owl.jena
OWLFilesCreateProjectPlugin() - Constructor for class edu.stanford.smi.protegex.owl.jena.OWLFilesCreateProjectPlugin
OWLFilesPlugin - Interface in edu.stanford.smi.protegex.owl.jena
OWLFilesWizardPage - Class in edu.stanford.smi.protegex.owl.ui.jena
OWLFilesWizardPage(Wizard, OWLFilesCreateProjectPlugin) - Constructor for class edu.stanford.smi.protegex.owl.ui.jena.OWLFilesWizardPage
OWLFormsTab - Class in edu.stanford.smi.protegex.owl.ui.widget
OWLFormsTab() - Constructor for class edu.stanford.smi.protegex.owl.ui.widget.OWLFormsTab
OWLFormWidget - Class in edu.stanford.smi.protegex.owl.ui.widget
OWLFormWidget() - Constructor for class edu.stanford.smi.protegex.owl.ui.widget.OWLFormWidget
OWLFrameFactoryInvocationHandler - Class in edu.stanford.smi.protegex.owl.model.framestore
  Deprecated. - Not needed anymore. The conversion of the frames into OWL Java objects is handled in a different way
OWLFrameFactoryInvocationHandler() - Constructor for class edu.stanford.smi.protegex.owl.model.framestore.OWLFrameFactoryInvocationHandler
  Deprecated.
OWLFramesMapping - Class in edu.stanford.smi.protegex.owl.jena.parser
OWLFramesMapping() - Constructor for class edu.stanford.smi.protegex.owl.jena.parser.OWLFramesMapping
OWLFrameStore - Class in edu.stanford.smi.protegex.owl.model.framestore
  A FrameStore with specific support for OWL ontologies.
OWLFrameStore(AbstractOWLModel) - Constructor for class edu.stanford.smi.protegex.owl.model.framestore.OWLFrameStore
OWLFrameStoreManager - Class in edu.stanford.smi.protegex.owl.model.framestore
OWLFrameStoreManager(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.model.framestore.OWLFrameStoreManager
OWLFrameStoreUtils - Class in edu.stanford.smi.protegex.owl.util
  This class contains a variety of useful OWL Utilities.
OWLFrameStoreUtils() - Constructor for class edu.stanford.smi.protegex.owl.util.OWLFrameStoreUtils
OWLGetOwnSlotValuesBrowserTextJob - Class in edu.stanford.smi.protegex.owl.ui.individuals
OWLGetOwnSlotValuesBrowserTextJob(KnowledgeBase, Frame, Slot, boolean) - Constructor for class edu.stanford.smi.protegex.owl.ui.individuals.OWLGetOwnSlotValuesBrowserTextJob
OWLHasValue(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParser
OWLHasValue - Interface in edu.stanford.smi.protegex.owl.model
  A class representing an owl:hasValue restriction.
OWLHasValueValue() - Method in class edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParser
OWLHasValueValueAndEOF() - Method in class edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParser
OWLHasValueValueBooleanOrInstance() - Method in class edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParser
OWLHasValueValueFloat() - Method in class edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParser
OWLHasValueValueInteger() - Method in class edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParser
OWLHasValueValueString() - Method in class edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParser
OWLIcons - Class in edu.stanford.smi.protegex.owl.ui.icons
  A singleton that provides access to the OWL specific icons.
OWLIcons() - Constructor for class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
OWLIcons.DefaultReadOnlyFilter - Class in edu.stanford.smi.protegex.owl.ui.icons
OWLIcons.DefaultReadOnlyFilter(double, int, int, int) - Constructor for class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons.DefaultReadOnlyFilter
OWLIcons.InheritedColorfulFilter - Class in edu.stanford.smi.protegex.owl.ui.icons
  Removes all pixels unless they are black.
OWLIcons.InheritedColorfulFilter() - Constructor for class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons.InheritedColorfulFilter
OWLIcons.MulticoloredReadOnlyFilter - Class in edu.stanford.smi.protegex.owl.ui.icons
OWLIcons.MulticoloredReadOnlyFilter() - Constructor for class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons.MulticoloredReadOnlyFilter
OWLImporter - Class in edu.stanford.smi.protegex.owl.jena.importer
  An object that is capable of creating a default (CLIPS) knowledge base from an OWLModel.
OWLImporter(OWLModel, KnowledgeBase) - Constructor for class edu.stanford.smi.protegex.owl.jena.importer.OWLImporter
OWLImportsCache - Class in edu.stanford.smi.protegex.owl.jena.parser
OWLImportsCache() - Constructor for class edu.stanford.smi.protegex.owl.jena.parser.OWLImportsCache
OWLIndividual - Interface in edu.stanford.smi.protegex.owl.model
  A simple instance of an owl:Class (i.e.
OWLIndividualsTab - Class in edu.stanford.smi.protegex.owl.ui.individuals
  A tab used to acquire individuals.
OWLIndividualsTab() - Constructor for class edu.stanford.smi.protegex.owl.ui.individuals.OWLIndividualsTab
OWLInstanceLogRecord - Class in edu.stanford.smi.protegex.owl.inference.protegeowl.log
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Aug 23, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
OWLInstanceLogRecord(RDFResource, ReasonerLogRecord) - Constructor for class edu.stanford.smi.protegex.owl.inference.protegeowl.log.OWLInstanceLogRecord
OWLIntersectionClass() - Method in class edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxParser
OWLIntersectionClass() - Method in class edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParser
OWLIntersectionClass - Interface in edu.stanford.smi.protegex.owl.model
  A OWLLogicalClass that represents an intersection of its operands.
OWLInversePropertyWidget - Class in edu.stanford.smi.protegex.owl.ui.properties
  An adjusted version of the InverseSlotWidget that honors the OWL look and feel.
OWLInversePropertyWidget() - Constructor for class edu.stanford.smi.protegex.owl.ui.properties.OWLInversePropertyWidget
OWLJavaFactory - Class in edu.stanford.smi.protegex.owl.model.factory
  A DefaultFrameFactory that creates the proper Java objects for Protege frames.
OWLJavaFactory(AbstractOWLModel) - Constructor for class edu.stanford.smi.protegex.owl.model.factory.OWLJavaFactory
OWLKnowledgeBaseFactory - Interface in edu.stanford.smi.protegex.owl.storage
  An interface for KnowledgeBaseFactories which can save proper OWL.
OWLLabeledComponent - Class in edu.stanford.smi.protegex.owl.ui
OWLLabeledComponent(String, Component) - Constructor for class edu.stanford.smi.protegex.owl.ui.OWLLabeledComponent
OWLLabeledComponent(String, Component, boolean, boolean) - Constructor for class edu.stanford.smi.protegex.owl.ui.OWLLabeledComponent
OWLLabeledComponent(String, JScrollPane) - Constructor for class edu.stanford.smi.protegex.owl.ui.OWLLabeledComponent
OWLLogicalClass - Interface in edu.stanford.smi.protegex.owl.model
  The base interface of intersection, union and complement metaclasses.
OWLLogicalClassTreeNode - Class in edu.stanford.smi.protegex.owl.ui.explorer
OWLLogicalClassTreeNode(LazyTreeNode, OWLLogicalClass, ExplorerFilter) - Constructor for class edu.stanford.smi.protegex.owl.ui.explorer.OWLLogicalClassTreeNode
OWLMaxCardinality(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParser
OWLMaxCardinality - Interface in edu.stanford.smi.protegex.owl.model
  A Cls representing a maximumCardinality restriction.
OWLMaxCardinalityDatatypePart() - Method in class edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxParser
OWLMaxCardinalityObjectPart() - Method in class edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxParser
OWLMaxCardinalityRestriction() - Method in class edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxParser
OWLMenuProjectPlugin - Class in edu.stanford.smi.protegex.owl.ui.menu
  A ProjectPlugin that makes a couple of initializing adjustments to the main menu, tool bar etc, after a project has been loaded.
OWLMenuProjectPlugin() - Constructor for class edu.stanford.smi.protegex.owl.ui.menu.OWLMenuProjectPlugin
OWLMetadataTab - Class in edu.stanford.smi.protegex.owl.ui.metadatatab
  The OWLMetadataTab is a tab in the OWL-Plugin.
OWLMetadataTab() - Constructor for class edu.stanford.smi.protegex.owl.ui.metadatatab.OWLMetadataTab
OWLMetadataWidget - Class in edu.stanford.smi.protegex.owl.ui.metadata
  Deprecated.
OWLMetadataWidget() - Constructor for class edu.stanford.smi.protegex.owl.ui.metadata.OWLMetadataWidget
  Deprecated.
OwlMetaProjectConstants - Class in edu.stanford.smi.protegex.owl.server.metaproject
OwlMetaProjectConstants() - Constructor for class edu.stanford.smi.protegex.owl.server.metaproject.OwlMetaProjectConstants
OWLMinCardinality(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParser
OWLMinCardinality - Interface in edu.stanford.smi.protegex.owl.model
  A Cls representing a minimumCardinality restriction.
OWLMinCardinalityDatatypePart() - Method in class edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxParser
OWLMinCardinalityObjectPart() - Method in class edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxParser
OWLMinCardinalityRestriction() - Method in class edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxParser
owlModel - Variable in class edu.stanford.smi.protegex.owl.inference.reasoner.AbstractProtegeReasoner
owlModel - Variable in class edu.stanford.smi.protegex.owl.jena.parser.AbstractStatefulTripleProcessor
owlModel - Variable in class edu.stanford.smi.protegex.owl.model.framestore.updater.AbstractRestrictionUpdater
  The OWLModel this operates on
owlModel - Variable in class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
OWLModel - Interface in edu.stanford.smi.protegex.owl.model
  A KnowledgeBase with a number of convenience methods to handle anonymous classes.
owlModel - Variable in class edu.stanford.smi.protegex.owl.model.triplestore.impl.TripleStoreImpl
owlModel - Variable in class edu.stanford.smi.protegex.owl.ui.cls.OWLSubclassPane
owlModel - Variable in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTableModel
owlModel - Variable in class edu.stanford.smi.protegex.owl.ui.testing.AbstractOWLTestAction
OWLModelAction - Interface in edu.stanford.smi.protegex.owl.ui.actions
  An object representing a global "action" which can be used in tool bars and menu bars.
OWLModelActionAction - Class in edu.stanford.smi.protegex.owl.ui.menu
  A Swing Action wrapping an OWLModelAction.
OWLModelActionAction(OWLModelAction, OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.ui.menu.OWLModelActionAction
OWLModelActionConstants - Interface in edu.stanford.smi.protegex.owl.ui.actions
OWLModelActionManager - Class in edu.stanford.smi.protegex.owl.ui.actions
  A singleton managing the available OWLModelActions.
OWLModelActionManager() - Constructor for class edu.stanford.smi.protegex.owl.ui.actions.OWLModelActionManager
OWLModelActionManager.Adder - Interface in edu.stanford.smi.protegex.owl.ui.actions
OWLModelAllTripleStoresWriter - Class in edu.stanford.smi.protegex.owl.writer.rdfxml.rdfwriter
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Oct 8, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
OWLModelAllTripleStoresWriter(OWLModel, URI, boolean) - Constructor for class edu.stanford.smi.protegex.owl.writer.rdfxml.rdfwriter.OWLModelAllTripleStoresWriter
OWLModelContentWriter - Class in edu.stanford.smi.protegex.owl.writer.rdfxml.rdfwriter
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Oct 8, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
OWLModelContentWriter(OWLModel, TripleStore) - Constructor for class edu.stanford.smi.protegex.owl.writer.rdfxml.rdfwriter.OWLModelContentWriter
OWLModelContentWriter(OWLModel, TripleStore, Comparator<RDFResource>) - Constructor for class edu.stanford.smi.protegex.owl.writer.rdfxml.rdfwriter.OWLModelContentWriter
  Constructs an OWLModel RDF/XML rdfwriter to render the specified `OWLModel`.
OWLModelOrderedWriter - Class in edu.stanford.smi.protegex.owl.writer.rdfxml.rdfwriter
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Oct 8, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
OWLModelOrderedWriter(OWLModel, TripleStore, Writer) - Constructor for class edu.stanford.smi.protegex.owl.writer.rdfxml.rdfwriter.OWLModelOrderedWriter
OWLModelTest - Interface in edu.stanford.smi.protegex.owl.testing
  An interface for objects that can perform sanity checks on an ontology.
OWLModelVisitor - Interface in edu.stanford.smi.protegex.owl.model.visitor
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Jan 8, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm

  This visitor interface may be used when there is a need to perform operations on the objects in the `OWLModel`.
OWLModelVisitorAdapter - Class in edu.stanford.smi.protegex.owl.model.visitor
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Jan 19, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm

  An implementation of `OWLModelVisitor` that provides null methods.
OWLModelVisitorAdapter() - Constructor for class edu.stanford.smi.protegex.owl.model.visitor.OWLModelVisitorAdapter
OWLModelVisitorHelper - Class in edu.stanford.smi.protegex.owl.model.visitor
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Jan 8, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
OWLModelVisitorHelper(OWLModel, OWLModelVisitor) - Constructor for class edu.stanford.smi.protegex.owl.model.visitor.OWLModelVisitorHelper
  Constructs a visitor helper, whose methods will visit the specified `OWLModel` with the specified `OWLModelVisitor`
OWLModelWriter - Class in edu.stanford.smi.protegex.owl.writer.rdfxml.rdfwriter
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Apr 7, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm

  The `OWLModelWriter` can be used to write out a `TripleStore` in a specified `OWLModel` in RDF/XML format.
OWLModelWriter(OWLModel, TripleStore, Writer) - Constructor for class edu.stanford.smi.protegex.owl.writer.rdfxml.rdfwriter.OWLModelWriter
  Creates an object that can be used to write an `OWLModel` in RDF/XML format to a specified rdfwriter.
OWLModelWriter(OWLModel, TripleStore, XMLWriter) - Constructor for class edu.stanford.smi.protegex.owl.writer.rdfxml.rdfwriter.OWLModelWriter
  Creates an object that can be used to write an `OWLModel` in RDF/XML format to a specified `XMLWriter`.
OWLNamedClass() - Method in class edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxParser
OWLNamedClass - Interface in edu.stanford.smi.protegex.owl.model
  A named OWL class.
OWLNames - Interface in edu.stanford.smi.protegex.owl.model
  Defines the names of the OWL system ontology.
OWLNames.Cls - Interface in edu.stanford.smi.protegex.owl.model
OWLNames.ClsID - Interface in edu.stanford.smi.protegex.owl.model
OWLNames.Slot - Interface in edu.stanford.smi.protegex.owl.model
OWLNamespaceManager - Class in edu.stanford.smi.protegex.owl.model.impl
OWLNamespaceManager() - Constructor for class edu.stanford.smi.protegex.owl.model.impl.OWLNamespaceManager
OWLNamespacesPanel - Class in edu.stanford.smi.protegex.owl.ui.metadatatab
  A JPanel that allows users to view and edit the default namespace, the prefixes and the imports of an OWLOntology.
OWLNamespacesPanel(OWLOntology) - Constructor for class edu.stanford.smi.protegex.owl.ui.metadatatab.OWLNamespacesPanel
OWLNamespacesWidget - Class in edu.stanford.smi.protegex.owl.ui.metadatatab
OWLNamespacesWidget() - Constructor for class edu.stanford.smi.protegex.owl.ui.metadatatab.OWLNamespacesWidget
OWLNAryLogicalClass - Interface in edu.stanford.smi.protegex.owl.model
OWLObjectProperty - Interface in edu.stanford.smi.protegex.owl.model
  An OWL property with objects as values.
OWLObjectPropertySubpropertyPane - Class in edu.stanford.smi.protegex.owl.ui.properties
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Jan 17, 2006

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
OWLObjectPropertySubpropertyPane(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.ui.properties.OWLObjectPropertySubpropertyPane
OWLObjectPropertySubpropertyRoot - Class in edu.stanford.smi.protegex.owl.ui.properties
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Jan 17, 2006

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
OWLObjectPropertySubpropertyRoot(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.ui.properties.OWLObjectPropertySubpropertyRoot
OWLObjectPropertyTypesWidget - Static variable in class edu.stanford.smi.protegex.owl.ui.forms.ProtegeFormsNames
OWLObjectPropertyTypesWidget - Class in edu.stanford.smi.protegex.owl.ui.properties.types
  A AbstractPropertyTypesWidget for OWLObjectProperties.
OWLObjectPropertyTypesWidget() - Constructor for class edu.stanford.smi.protegex.owl.ui.properties.types.OWLObjectPropertyTypesWidget
OWLOntology - Interface in edu.stanford.smi.protegex.owl.model
  A RDFIndividual that represents an OWL Ontology (tag).
owlOntologyLocToOntologName - Static variable in class edu.stanford.smi.protegex.owl.jena.parser.OWLImportsCache
owlOntoloyToImportsMap - Static variable in class edu.stanford.smi.protegex.owl.jena.parser.OWLImportsCache
OWLProfiles - Class in edu.stanford.smi.protegex.owl.ui.profiles
  Vocabulary definitions from file:/C:/projects/owl/schemagen-temp.owl
OWLProfiles() - Constructor for class edu.stanford.smi.protegex.owl.ui.profiles.OWLProfiles
OWLProject - Interface in edu.stanford.smi.protegex.owl.model.project
  A generic interface to store project-related settings and configurations.
OwlProjectFromReaderCreator - Class in edu.stanford.smi.protegex.owl.jena.creator
OwlProjectFromReaderCreator() - Constructor for class edu.stanford.smi.protegex.owl.jena.creator.OwlProjectFromReaderCreator
OwlProjectFromReaderCreator(JenaKnowledgeBaseFactory) - Constructor for class edu.stanford.smi.protegex.owl.jena.creator.OwlProjectFromReaderCreator
OwlProjectFromStreamCreator - Class in edu.stanford.smi.protegex.owl.jena.creator
OwlProjectFromStreamCreator() - Constructor for class edu.stanford.smi.protegex.owl.jena.creator.OwlProjectFromStreamCreator
OwlProjectFromStreamCreator(JenaKnowledgeBaseFactory) - Constructor for class edu.stanford.smi.protegex.owl.jena.creator.OwlProjectFromStreamCreator
OwlProjectFromUriCreator - Class in edu.stanford.smi.protegex.owl.jena.creator
OwlProjectFromUriCreator() - Constructor for class edu.stanford.smi.protegex.owl.jena.creator.OwlProjectFromUriCreator
OwlProjectFromUriCreator(JenaKnowledgeBaseFactory) - Constructor for class edu.stanford.smi.protegex.owl.jena.creator.OwlProjectFromUriCreator
OWLProperties - Interface in edu.stanford.smi.protegex.owl.ui.actions
OWLPropertiesTab - Class in edu.stanford.smi.protegex.owl.ui.properties
  The tab to edit RDFProperties.
OWLPropertiesTab() - Constructor for class edu.stanford.smi.protegex.owl.ui.properties.OWLPropertiesTab
OWLProperty - Interface in edu.stanford.smi.protegex.owl.model
  The common base interface of OWLDatatypeProperty and OWLObjectProperty.
OWLProperty_type - Static variable in class edu.stanford.smi.protegex.owl.ui.profiles.OWLProfiles
OWLPropertyHierarchiesPanel - Class in edu.stanford.smi.protegex.owl.ui.properties
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Jan 17, 2006

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
OWLPropertyHierarchiesPanel(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.ui.properties.OWLPropertyHierarchiesPanel
OWLPropertyHierarchyPanel - Class in edu.stanford.smi.protegex.owl.ui.properties
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Jan 18, 2006

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
OWLPropertyHierarchyPanel(OWLSubpropertyPane, OWLSuperpropertiesPanel) - Constructor for class edu.stanford.smi.protegex.owl.ui.properties.OWLPropertyHierarchyPanel
OWLPropertyLogRecord - Class in edu.stanford.smi.protegex.owl.inference.protegeowl.log
OWLPropertyLogRecord(RDFProperty, ReasonerLogRecord) - Constructor for class edu.stanford.smi.protegex.owl.inference.protegeowl.log.OWLPropertyLogRecord
OWLPropertySubpropertyNode - Class in edu.stanford.smi.protegex.owl.ui.properties
OWLPropertySubpropertyNode(LazyTreeNode, Slot) - Constructor for class edu.stanford.smi.protegex.owl.ui.properties.OWLPropertySubpropertyNode
OWLPropertySubpropertyRoot - Class in edu.stanford.smi.protegex.owl.ui.properties
OWLPropertySubpropertyRoot(OWLModel, Collection) - Constructor for class edu.stanford.smi.protegex.owl.ui.properties.OWLPropertySubpropertyRoot
OWLPropertySubpropertyRoot(OWLModel, Collection, boolean) - Constructor for class edu.stanford.smi.protegex.owl.ui.properties.OWLPropertySubpropertyRoot
OWLPropertySubpropertyRoot(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.ui.properties.OWLPropertySubpropertyRoot
OWLPropertySubpropertyRoot(OWLModel, boolean) - Constructor for class edu.stanford.smi.protegex.owl.ui.properties.OWLPropertySubpropertyRoot
OWLQuantifierRestriction - Interface in edu.stanford.smi.protegex.owl.model
  The common base interface of OWLAllValuesFrom and OWLSomeValuesFrom.
OWLQuantifierRestrictionTreeNode - Class in edu.stanford.smi.protegex.owl.ui.explorer
OWLQuantifierRestrictionTreeNode(LazyTreeNode, OWLQuantifierRestriction, ExplorerFilter) - Constructor for class edu.stanford.smi.protegex.owl.ui.explorer.OWLQuantifierRestrictionTreeNode
OWLRangeWidget - Static variable in class edu.stanford.smi.protegex.owl.ui.forms.ProtegeFormsNames
OWLRangeWidget - Class in edu.stanford.smi.protegex.owl.ui.properties.range
  A property widget to edit the range of an RDFProperty (or subclasses).
OWLRangeWidget() - Constructor for class edu.stanford.smi.protegex.owl.ui.properties.range.OWLRangeWidget
OWLRemoveAction - Class in edu.stanford.smi.protegex.owl.ui.actions
OWLRemoveAction(String, Selectable) - Constructor for class edu.stanford.smi.protegex.owl.ui.actions.OWLRemoveAction
OWLRemoveAction(String, Icon, Selectable) - Constructor for class edu.stanford.smi.protegex.owl.ui.actions.OWLRemoveAction
OWLResourceNameMatcher - Class in edu.stanford.smi.protegex.owl.ui.code
OWLResourceNameMatcher() - Constructor for class edu.stanford.smi.protegex.owl.ui.code.OWLResourceNameMatcher
OWLRestriction() - Method in class edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxParser
OWLRestriction - Interface in edu.stanford.smi.protegex.owl.model
  The base class of all OWL restriction classes.
OWLRestrictionOrNamedClass() - Method in class edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParser
OWLSomeValuesFrom(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParser
OWLSomeValuesFrom - Interface in edu.stanford.smi.protegex.owl.model
  A some-values-from OWLRestriction.
OWLSomeValuesFromDatatypePart() - Method in class edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxParser
OWLSomeValuesFromObjectPart() - Method in class edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxParser
OWLSomeValuesFromRestriction() - Method in class edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxParser
OwlState - Enum in edu.stanford.smi.protegex.owl.server
OwlStateMachine - Class in edu.stanford.smi.protegex.owl.server
OwlStateMachine(FrameStore, OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.server.OwlStateMachine
OwlSubclassFrameStore - Class in edu.stanford.smi.protegex.owl.model.framestore
OwlSubclassFrameStore(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.model.framestore.OwlSubclassFrameStore
OWLSubclassPane - Class in edu.stanford.smi.protegex.owl.ui.cls
  A SubclassPane optimized for OWLModels.
OWLSubclassPane(OWLModel, Action, Cls, Action) - Constructor for class edu.stanford.smi.protegex.owl.ui.cls.OWLSubclassPane
  Deprecated.
OWLSubclassPane(OWLModel, Action, RDFSNamedClass) - Constructor for class edu.stanford.smi.protegex.owl.ui.cls.OWLSubclassPane
OWLSubpropertyPane - Class in edu.stanford.smi.protegex.owl.ui.properties
  A SelectableContainer displaying a tree of properties.
OWLSubpropertyPane(Project) - Constructor for class edu.stanford.smi.protegex.owl.ui.properties.OWLSubpropertyPane
  Deprecated. the other constructor is better
OWLSubpropertyPane(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.ui.properties.OWLSubpropertyPane
OWLSuperpropertiesPanel - Class in edu.stanford.smi.protegex.owl.ui.properties
  A SelectableContainer showing the superproperties of given RDFProperty.
OWLSuperpropertiesPanel(OWLSubpropertyPane, Project) - Constructor for class edu.stanford.smi.protegex.owl.ui.properties.OWLSuperpropertiesPanel
  Deprecated.
OWLSuperpropertiesPanel(OWLSubpropertyPane, OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.ui.properties.OWLSuperpropertiesPanel
OWLSymbolPanel - Class in edu.stanford.smi.protegex.owl.ui.code
  A JPanel hosting buttons that accellerate editing of OWL expressions.
OWLSymbolPanel(OWLModel, boolean) - Constructor for class edu.stanford.smi.protegex.owl.ui.code.OWLSymbolPanel
OWLSymbolPanel(OWLModel, boolean, boolean) - Constructor for class edu.stanford.smi.protegex.owl.ui.code.OWLSymbolPanel
OWLSyntaxConverter - Class in edu.stanford.smi.protegex.owl.ui.code
OWLSyntaxConverter(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.ui.code.OWLSyntaxConverter
OWLSystemFrames - Class in edu.stanford.smi.protegex.owl.model.impl
OWLSystemFrames(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames
OWLSystemFrames.OWLSystemFramesAssertions - Class in edu.stanford.smi.protegex.owl.model.impl
OWLSystemFrames.OWLSystemFramesAssertions(FrameStore) - Constructor for class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames.OWLSystemFramesAssertions
OWLSystemFrames.SystemFramesAsserter - Class in edu.stanford.smi.protegex.owl.model.impl
OWLSystemFrames.SystemFramesAsserter(FrameStore) - Constructor for class edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames.SystemFramesAsserter
OWLTable - Class in edu.stanford.smi.protegex.owl.ui.owltable
  A JTable in which one column displays an OWL expression in the syntax defined by the OWLModel's OWLClassDisplay.
OWLTable(OWLTableModel, OWLModel, boolean) - Constructor for class edu.stanford.smi.protegex.owl.ui.owltable.OWLTable
OWLTableAction - Interface in edu.stanford.smi.protegex.owl.ui.owltable
  An AbstractAction that's enabling state depends on the chosen row in the table.
OWLTableModel - Interface in edu.stanford.smi.protegex.owl.ui.owltable
  The base TableModel for all OWLTables.
OWLTableTransferHandler - Class in edu.stanford.smi.protegex.owl.ui.owltable
  A TransferHandler for transferring parsable OWL expressions with an OWLTable.
OWLTableTransferHandler(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.ui.owltable.OWLTableTransferHandler
OWLTest - Interface in edu.stanford.smi.protegex.owl.testing
OWLTestAction - Class in edu.stanford.smi.protegex.owl.ui.testing
OWLTestAction() - Constructor for class edu.stanford.smi.protegex.owl.ui.testing.OWLTestAction
OWLTestInstanceAction - Class in edu.stanford.smi.protegex.owl.ui.testing
OWLTestInstanceAction(OWLModel, OWLTestManager, Selectable) - Constructor for class edu.stanford.smi.protegex.owl.ui.testing.OWLTestInstanceAction
OWLTestLibrary - Class in edu.stanford.smi.protegex.owl.testing
  A static utility class that manages the available OWLTests on this machine.
OWLTestLibrary() - Constructor for class edu.stanford.smi.protegex.owl.testing.OWLTestLibrary
OWLTestManager - Interface in edu.stanford.smi.protegex.owl.testing
  A container of the currently active OWLTests.
OWLTestResult - Interface in edu.stanford.smi.protegex.owl.testing
OWLTestResultsPanel - Class in edu.stanford.smi.protegex.owl.ui.testing
  A JPanel to display the results of a "Find usage" search.
OWLTestResultsPanel(OWLModel, Collection, Instance, boolean) - Constructor for class edu.stanford.smi.protegex.owl.ui.testing.OWLTestResultsPanel
OWLTestResultsTableModel - Class in edu.stanford.smi.protegex.owl.ui.testing
  A TableModel displaying the results of an OWLTest run.
OWLTestResultsTableModel(OWLModel, Collection) - Constructor for class edu.stanford.smi.protegex.owl.ui.testing.OWLTestResultsTableModel
OWLTestSettingsAction - Class in edu.stanford.smi.protegex.owl.ui.testing
  Deprecated. use OWLSettingsPanel directly (currently within PreferencesPanel)
OWLTestSettingsAction() - Constructor for class edu.stanford.smi.protegex.owl.ui.testing.OWLTestSettingsAction
  Deprecated.
OWLTestSettingsPanel - Class in edu.stanford.smi.protegex.owl.ui.testing
  A JPanel to specify which OWLTests shall be active in a project.
OWLTestSettingsPanel(OWLTestManager) - Constructor for class edu.stanford.smi.protegex.owl.ui.testing.OWLTestSettingsPanel
OWLTestSettingsTableModel - Class in edu.stanford.smi.protegex.owl.ui.testing
OWLTestSettingsTableModel(OWLTestManager) - Constructor for class edu.stanford.smi.protegex.owl.ui.testing.OWLTestSettingsTableModel
OWLText - Class in edu.stanford.smi.protegex.owl.resource
OWLText() - Constructor for class edu.stanford.smi.protegex.owl.resource.OWLText
OWLTextArea - Class in edu.stanford.smi.protegex.owl.ui.code
  A SymbolTextArea with special support for editing OWL expressions in the Protege compact syntax.
OWLTextArea(OWLModel, SymbolErrorDisplay) - Constructor for class edu.stanford.smi.protegex.owl.ui.code.OWLTextArea
OWLTextAreaPanel - Class in edu.stanford.smi.protegex.owl.ui.code
  A panel which can be used to edit an OWL expression in a multi-line dialog.
OWLTextField - Class in edu.stanford.smi.protegex.owl.ui.code
  A SymbolTextField with special support for editing OWL expressions in the Protege compact syntax.
OWLTextField(OWLModel, SymbolErrorDisplay) - Constructor for class edu.stanford.smi.protegex.owl.ui.code.OWLTextField
OWLTextFormatter - Class in edu.stanford.smi.protegex.owl.ui.code
  A static utility class for JTextComponents with specific features to edit OWL expressions in the compact syntax.
OWLTextFormatter() - Constructor for class edu.stanford.smi.protegex.owl.ui.code.OWLTextFormatter
OWLTimeWidget - Class in edu.stanford.smi.protegex.owl.ui.widget
OWLTimeWidget() - Constructor for class edu.stanford.smi.protegex.owl.ui.widget.OWLTimeWidget
OWLTimeWidgetMetadata - Class in edu.stanford.smi.protegex.owl.ui.widget
OWLTimeWidgetMetadata() - Constructor for class edu.stanford.smi.protegex.owl.ui.widget.OWLTimeWidgetMetadata
OWLToolTipGenerator - Interface in edu.stanford.smi.protegex.owl.ui.widget
  An interface for objects that can generate tool tip texts for class trees, OWLTables, etc.
OWLUI - Class in edu.stanford.smi.protegex.owl.ui.widget
  A collection of global utilities for OWL user interface components.
OWLUI() - Constructor for class edu.stanford.smi.protegex.owl.ui.widget.OWLUI
OWLUnionClass() - Method in class edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxParser
OWLUnionClass() - Method in class edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParser
OWLUnionClass - Interface in edu.stanford.smi.protegex.owl.model
  A OWLLogicalClass which consists of the union of its operands.
OWLUtil - Class in edu.stanford.smi.protegex.owl.model.impl
  A collection of static utility methods for OWL classes.
OWLUtil() - Constructor for class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
OWLViewWizardPage - Class in edu.stanford.smi.protegex.owl.ui.menu
OWLViewWizardPage(Wizard, OWLCreateProjectPlugin) - Constructor for class edu.stanford.smi.protegex.owl.ui.menu.OWLViewWizardPage
OWLWidgetMapper - Class in edu.stanford.smi.protegex.owl.ui.widget
OWLWidgetMapper(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.ui.widget.OWLWidgetMapper
OWLWidgetMetadata - Interface in edu.stanford.smi.protegex.owl.ui.widget
  An interface for objects that provide metadata about a widget type.
OWLWidgetPropertyListUtil - Class in edu.stanford.smi.protegex.owl.ui.forms
  Class for loadind/saving owl widget properties in the .forms file.
OWLWidgetPropertyListUtil() - Constructor for class edu.stanford.smi.protegex.owl.ui.forms.OWLWidgetPropertyListUtil
OWLWidgetUtil - Class in edu.stanford.smi.protegex.owl.ui.widget
OWLWidgetUtil() - Constructor for class edu.stanford.smi.protegex.owl.ui.widget.OWLWidgetUtil
OWLWizard - Class in edu.stanford.smi.protegex.owl.ui.wizard
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Dec 7, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
  Overrides the wizard to add notification to wizard pages for next and prev button pressed.
OWLWizard(JComponent, String) - Constructor for class edu.stanford.smi.protegex.owl.ui.wizard.OWLWizard
OWLWizardPage - Class in edu.stanford.smi.protegex.owl.ui.wizard
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Dec 7, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
OWLWizardPage(String, OWLWizard) - Constructor for class edu.stanford.smi.protegex.owl.ui.wizard.OWLWizardPage
ownFacetAdded(FrameEvent) - Method in class edu.stanford.smi.protegex.owl.model.event.PropertyValueAdapter
  Deprecated.
ownFacetAdded(FrameEvent) - Method in interface edu.stanford.smi.protegex.owl.model.event.ProtegeFrameListener
  Deprecated. not supported in OWL
ownFacetRemoved(FrameEvent) - Method in class edu.stanford.smi.protegex.owl.model.event.PropertyValueAdapter
  Deprecated.
ownFacetRemoved(FrameEvent) - Method in interface edu.stanford.smi.protegex.owl.model.event.ProtegeFrameListener
  Deprecated. not supported in OWL
ownFacetValueChanged(FrameEvent) - Method in class edu.stanford.smi.protegex.owl.model.event.PropertyValueAdapter
  Deprecated.
ownFacetValueChanged(FrameEvent) - Method in interface edu.stanford.smi.protegex.owl.model.event.ProtegeFrameListener
  Deprecated. not supported in OWL
ownSlotAdded(FrameEvent) - Method in class edu.stanford.smi.protegex.owl.model.event.PropertyValueAdapter
  Deprecated.
ownSlotAdded(FrameEvent) - Method in interface edu.stanford.smi.protegex.owl.model.event.ProtegeFrameListener
  Deprecated. not needed
ownSlotRemoved(FrameEvent) - Method in class edu.stanford.smi.protegex.owl.model.event.PropertyValueAdapter
  Deprecated.
ownSlotRemoved(FrameEvent) - Method in interface edu.stanford.smi.protegex.owl.model.event.ProtegeFrameListener
  Deprecated. not needed
ownSlotValueChanged(FrameEvent) - Method in class edu.stanford.smi.protegex.owl.model.event.PropertyValueAdapter
  Deprecated.
ownSlotValueChanged(FrameEvent) - Method in interface edu.stanford.smi.protegex.owl.model.event.ProtegeFrameListener
  Deprecated.
ownSlotValueChanged(FrameEvent) - Method in class edu.stanford.smi.protegex.owl.model.event.ResourceAdapter
  Deprecated.

## P

P3OWLUtil - Class in edu.stanford.smi.protegex.owl.swrl.util
  Class that wraps some common Protege-OWL API methods and throws meaningful exceptions when errors are encountered.
P3OWLUtil() - Constructor for class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
P3OWLUtilException - Exception in edu.stanford.smi.protegex.owl.swrl.util
P3OWLUtilException(String) - Constructor for exception edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtilException
P3OWLUtilException(String, Throwable) - Constructor for exception edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtilException
P3SWRLTabPluginCreator - Interface in edu.stanford.smi.protegex.owl.swrl.ui
  This interface must thus be implemented by a SWRLTab plugin to create a Java Component that represents the plugin's GUI.
P3SWRLTabPluginManager - Class in edu.stanford.smi.protegex.owl.swrl
  This class provides mechanisms for Protege-OWL SWRLTab plugins to register themselves and to get screen real estate in the SWRLTab.
P3SWRLTabPluginManager() - Constructor for class edu.stanford.smi.protegex.owl.swrl.P3SWRLTabPluginManager
P3SWRLTabPluginRegistrationRecord - Class in edu.stanford.smi.protegex.owl.swrl
P3SWRLTabPluginRegistrationRecord(String, String, String, Icon, Icon, Icon, P3SWRLTabPluginCreator) - Constructor for class edu.stanford.smi.protegex.owl.swrl.P3SWRLTabPluginRegistrationRecord
PACKAGE - Static variable in class edu.stanford.smi.protegex.owl.emf.ProjectBasedEMFGeneratorOptions
PACKAGE - Static variable in class edu.stanford.smi.protegex.owl.javacode.ProjectBasedJavaCodeGeneratorOptions
Package - Class in edu.stanford.smi.protegex.owl.server.triplestore
Package(List<RemoteServerNarrowFrameStore>, List<NamespaceManager>, List<String>, String, String) - Constructor for class edu.stanford.smi.protegex.owl.server.triplestore.Package
pageSelected() - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.imports.wizard.AbstractImportStartWizardPage
pageSelected() - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.imports.wizard.ImportVerificationPage
pageSelected() - Method in class edu.stanford.smi.protegex.owl.ui.repository.wizard.PluginPanelHolder
pageSelected() - Method in class edu.stanford.smi.protegex.owl.ui.wizard.OWLWizardPage
paint(Graphics) - Method in class edu.stanford.smi.protegex.owl.ui.clsproperties.PropertyRestrictionsTreeRenderer
paint(Graphics) - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTable
paint(Graphics) - Method in class edu.stanford.smi.protegex.owl.ui.conditions.SeparatorCellRenderer
paint(Graphics) - Method in class edu.stanford.smi.protegex.owl.ui.ResourceRenderer
paintComponent(Graphics) - Method in class edu.stanford.smi.protegex.owl.ui.metrics.lang.DLNamePanel
paintComponent(Graphics) - Method in class edu.stanford.smi.protegex.owl.ui.repository.RepositoryPanel
paintComponents(Graphics) - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.manchester.SuggestionPopup
paintIcon(Component, Graphics, int, int) - Method in class edu.stanford.smi.protegex.owl.ui.icons.OverlayIcon
paintIcon(Component, Graphics, int, int) - Method in class edu.stanford.smi.protegex.owl.ui.resourceselection.DropDownOverlayIcon
paintString(Graphics, String, Point, Color, Dimension) - Method in class edu.stanford.smi.protegex.owl.ui.ResourceRenderer
PAL_CONSTRAINT - Static variable in interface edu.stanford.smi.protegex.owl.model.ProtegeNames.Cls
PAL_DESCRIPTION - Static variable in interface edu.stanford.smi.protegex.owl.model.ProtegeNames.Slot
PAL_NAME - Static variable in interface edu.stanford.smi.protegex.owl.model.ProtegeNames.Slot
PAL_RANGE - Static variable in interface edu.stanford.smi.protegex.owl.model.ProtegeNames.Slot
PAL_STATEMENT - Static variable in interface edu.stanford.smi.protegex.owl.model.ProtegeNames.Slot
PARENTS - Static variable in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGVocabulary.Ask
parse() - Method in class edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxParser
parse(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFSDatatype
parse(String) - Static method in class edu.stanford.smi.protegex.owl.repository.impl.DatabaseRepository
parse(String) - Method in class edu.stanford.smi.protegex.owl.swrl.parser.SWRLParser
parse(String, SWRLImp) - Method in class edu.stanford.smi.protegex.owl.swrl.parser.SWRLParser
PARSE_TYPE - Static variable in interface edu.stanford.smi.protegex.owl.model.RDFNames.Slot
parseClass(OWLModel, String) - Method in class edu.stanford.smi.protegex.owl.model.classparser.compact.CompactOWLClassParser
parseClass(OWLModel, String) - Method in class edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxClassParser
parseClass(OWLModel, String) - Method in class edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLClassParser
parseClass(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParser
parseClass(OWLModel, String) - Method in interface edu.stanford.smi.protegex.owl.model.classparser.OWLClassParser
ParseException - Exception in edu.stanford.smi.protegex.owl.model.classparser.compact
  This exception is thrown when parse errors are encountered.
ParseException(Token, int[][], String[]) - Constructor for exception edu.stanford.smi.protegex.owl.model.classparser.compact.ParseException
  This constructor is used by the method "generateParseException" in the generated parser.
ParseException() - Constructor for exception edu.stanford.smi.protegex.owl.model.classparser.compact.ParseException
  The following constructors are for use by you for whatever purpose you can think of.
ParseException(String) - Constructor for exception edu.stanford.smi.protegex.owl.model.classparser.compact.ParseException
ParseException - Exception in edu.stanford.smi.protegex.owl.model.classparser.dl
  This exception is thrown when parse errors are encountered.
ParseException(Token, int[][], String[]) - Constructor for exception edu.stanford.smi.protegex.owl.model.classparser.dl.ParseException
  This constructor is used by the method "generateParseException" in the generated parser.
ParseException() - Constructor for exception edu.stanford.smi.protegex.owl.model.classparser.dl.ParseException
  The following constructors are for use by you for whatever purpose you can think of.
ParseException(String) - Constructor for exception edu.stanford.smi.protegex.owl.model.classparser.dl.ParseException
ParseException - Exception in edu.stanford.smi.protegex.owl.model.classparser.manchester
  This exception is thrown when parse errors are encountered.
ParseException(Token, int[][], String[]) - Constructor for exception edu.stanford.smi.protegex.owl.model.classparser.manchester.ParseException
  This constructor is used by the method "generateParseException" in the generated parser.
ParseException() - Constructor for exception edu.stanford.smi.protegex.owl.model.classparser.manchester.ParseException
  The following constructors are for use by you for whatever purpose you can think of.
ParseException(String) - Constructor for exception edu.stanford.smi.protegex.owl.model.classparser.manchester.ParseException
parseExpression(OWLModel, String, boolean) - Static method in class edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxParser
parseExpression() - Method in class edu.stanford.smi.protegex.owl.swrl.ui.table.SWRLSymbolEditor
parseExpression() - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.ClassDescriptionEditorComponent
parseExpression() - Method in class edu.stanford.smi.protegex.owl.ui.code.SymbolEditorComponent
parseFile() - Method in class edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParser
parseHasValueFiller(OWLModel, String) - Method in class edu.stanford.smi.protegex.owl.model.classparser.compact.CompactOWLClassParser
parseHasValueFiller(OWLModel, String) - Method in class edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxClassParser
parseHasValueFiller(OWLModel, String) - Method in class edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLClassParser
parseHasValueFiller(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParser
parseHasValueFiller(OWLModel, String) - Method in interface edu.stanford.smi.protegex.owl.model.classparser.OWLClassParser
parseIdentityDescrtiption(Document) - Method in class edu.stanford.smi.protegex.owl.inference.dig.reasoner.DIGReasonerIdentity
  Parses the DIG identity response and fills this object with the inference identity information
parseQuantifierFiller(OWLModel, String) - Method in class edu.stanford.smi.protegex.owl.model.classparser.compact.CompactOWLClassParser
parseQuantifierFiller(OWLModel, String) - Method in class edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxClassParser
parseQuantifierFiller(OWLModel, String) - Method in class edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLClassParser
parseQuantifierFiller(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParser
parseQuantifierFiller(OWLModel, String) - Method in interface edu.stanford.smi.protegex.owl.model.classparser.OWLClassParser
PARSERS_UNIQUE_SESSION_ID - Static variable in class edu.stanford.smi.protegex.owl.jena.parser.ParserUtil
ParserUtil - Class in edu.stanford.smi.protegex.owl.jena.parser
ParserUtil() - Constructor for class edu.stanford.smi.protegex.owl.jena.parser.ParserUtil
ParserUtils - Class in edu.stanford.smi.protegex.owl.model.classparser
ParserUtils() - Constructor for class edu.stanford.smi.protegex.owl.model.classparser.ParserUtils
PATH_SEPARATOR - Static variable in interface edu.stanford.smi.protegex.owl.ui.actions.OWLModelAction
PATTERN - Static variable in interface edu.stanford.smi.protegex.owl.model.XSDNames.Facet
PATTERN - Static variable in class edu.stanford.smi.protegex.owl.model.XSPNames
  Deprecated. use the helper method `XSPNames.get(int resourceID)`
performAction(RDFIndividual) - Static method in class edu.stanford.smi.protegex.owl.ui.actions.ConvertIndividualToClassAction
performAction(OWLNamedClass) - Static method in class edu.stanford.smi.protegex.owl.ui.cls.ConvertToDefinedClassAction
performAction(OWLNamedClass) - Static method in class edu.stanford.smi.protegex.owl.ui.cls.ConvertToPrimitiveClassAction
performAction(RDFSNamedClass, ClassTreePanel) - Static method in class edu.stanford.smi.protegex.owl.ui.cls.CreateSiblingClassAction
performAction(Collection, ClassTreePanel) - Static method in class edu.stanford.smi.protegex.owl.ui.cls.CreateSubclassAction
performAction(RDFSNamedClass, ClassTreePanel) - Static method in class edu.stanford.smi.protegex.owl.ui.cls.DeleteClassAction
performAction(Collection<RDFSNamedClass>, ClassTreePanel) - Static method in class edu.stanford.smi.protegex.owl.ui.cls.DeleteClassAction
performAction(RDFSNamedClass, PrintWriter) - Static method in class edu.stanford.smi.protegex.owl.ui.cls.ExtractTaxonomyAction
performAction(Cls, Set, String, PrintWriter) - Static method in class edu.stanford.smi.protegex.owl.ui.cls.ExtractTaxonomyAction
performAction(OWLNamedClass, OWLSomeValuesFrom) - Static method in class edu.stanford.smi.protegex.owl.ui.conditions.AddClosureAxiomAction
  Deprecated. please use the more generic version
performAction(OWLNamedClass, OWLExistentialRestriction) - Static method in class edu.stanford.smi.protegex.owl.ui.conditions.AddClosureAxiomAction
performAction(OWLNamedClass) - Static method in class edu.stanford.smi.protegex.owl.ui.conditions.AddCoveringAxiomAction
performAction(OWLModel, RDFProperty, OWLSubpropertyPane) - Static method in class edu.stanford.smi.protegex.owl.ui.properties.actions.CreateSubpropertyAction
performAction(RDFResource, String, Iterator) - Static method in class edu.stanford.smi.protegex.owl.ui.refactoring.RenameAcrossFilesAction
performAction(Project, File, String, String, Collection) - Static method in class edu.stanford.smi.protegex.owl.ui.refactoring.RenameAcrossFilesAction
performAction() - Method in class edu.stanford.smi.protegex.owl.ui.triplestore.CreateTripleStorePanel
performAction() - Method in class edu.stanford.smi.protegex.owl.ui.triplestore.SplitClassesIntoImportedTripleStorePanel
performErrorCheck(Document) - Method in class edu.stanford.smi.protegex.owl.inference.dig.reasoner.DefaultDIGReasoner
  This method checks for any errors in the DIG response and throws a DIGErrorException if there are any errors.
performRequest(Document) - Method in class edu.stanford.smi.protegex.owl.inference.dig.reasoner.DefaultDIGReasoner
performRequest(Document) - Method in interface edu.stanford.smi.protegex.owl.inference.dig.reasoner.DIGReasoner
  Sends a request to the reasoner and retrieves the response.
performSuggestion() - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.manchester.AbstractNamedObjectCreationSuggestion
performSuggestion() - Method in interface edu.stanford.smi.protegex.owl.ui.clsdesc.manchester.Suggestion
performTask(ReasonerTask, ReasonerTaskListener) - Method in class edu.stanford.smi.protegex.owl.inference.dig.DefaultProtegeDIGReasoner
  Executes the specified task after synchronizing the reasoner if necessary.
performTask(ReasonerTask, ReasonerTaskListener) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.DefaultProtegeOWLReasoner
  Executes the specified task after synchronizing the reasoner if necessary.
performTask(ReasonerTask) - Method in class edu.stanford.smi.protegex.owl.inference.reasoner.AbstractProtegeReasoner
performTask(ReasonerTask, ReasonerTaskListener) - Method in class edu.stanford.smi.protegex.owl.inference.reasoner.AbstractProtegeReasoner
pickConcreteClass(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.OWLUI
  Deprecated. use ProtegeUI.getSelectionDialogFactory()...
pickConcreteClass(OWLModel, Collection) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.OWLUI
  Deprecated. use ProtegeUI.getSelectionDialogFactory()...
pickConcreteClass(OWLModel, Collection, String) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.OWLUI
  Deprecated. use ProtegeUI.getSelectionDialogFactory()...
pickConcreteCls(Collection, String) - Method in class edu.stanford.smi.protegex.owl.ui.cls.OWLSubclassPane
pickOWLNamedClass(OWLModel, Collection, String) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.OWLUI
  Deprecated. use ProtegeUI.getSelectionDialogFactory()...
pickRDFProperties(Collection, String) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.OWLUI
  Deprecated. use ProtegeUI.getSelectionDialogFactory()...
pickRDFProperty(Collection, String) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.OWLUI
  Deprecated. use ProtegeUI.getSelectionDialogFactory()...
pickRDFResource(Collection) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.OWLUI
  Deprecated. use ProtegeUI.getSelectionDialogFactory()...
pickRDFResourceFromCollection(Collection, String) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.OWLUI
  Deprecated. use ProtegeUI.getSelectionDialogFactory()...
pickRDFResources(Collection) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.OWLUI
  Deprecated. use ProtegeUI.getSelectionDialogFactory()...
pickRDFResources(Collection, boolean) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.OWLUI
  Deprecated. use ProtegeUI.getSelectionDialogFactory()...
pickRDFSNamedClass(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.OWLUI
  Deprecated. use ProtegeUI.getSelectionDialogFactory()...
pickRDFSNamedClass(OWLModel, Collection, String) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.OWLUI
  Deprecated. use ProtegeUI.getSelectionDialogFactory()...
pickRDFSNamedClasses(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.OWLUI
  Deprecated. use ProtegeUI.getSelectionDialogFactory()...
pickResource() - Method in class edu.stanford.smi.protegex.owl.ui.classform.component.property.AddNamedClassAction
pickResource() - Method in class edu.stanford.smi.protegex.owl.ui.components.singleresource.SetResourceAction
pickResource() - Method in class edu.stanford.smi.protegex.owl.ui.components.triples.AddResourceAction
pickResource() - Method in class edu.stanford.smi.protegex.owl.ui.components.triples.CreateValueAction
pickResource() - Method in class edu.stanford.smi.protegex.owl.ui.existential.ExistentialAction
pickResource() - Method in class edu.stanford.smi.protegex.owl.ui.resourcedisplay.AddPropertyWidgetToFormAction
pickResource() - Method in class edu.stanford.smi.protegex.owl.ui.resourcedisplay.RemovePropertyWidgetFromFormAction
pickResource() - Method in class edu.stanford.smi.protegex.owl.ui.resourceselection.ResourceSelectionAction
  This method is used when single selection is allowed for this Action.
pickResources() - Method in class edu.stanford.smi.protegex.owl.ui.clsproperties.AddPropertyAction
pickResources() - Method in class edu.stanford.smi.protegex.owl.ui.components.AddResourceAction
pickResources() - Method in class edu.stanford.smi.protegex.owl.ui.properties.domain.AddClassToDomainAction
pickResources() - Method in class edu.stanford.smi.protegex.owl.ui.resourceselection.ResourceSelectionAction
  This method is only used when multiple selection is allowed for this Action.
PLUGIN_FOLDER - Static variable in class edu.stanford.smi.protegex.owl.ProtegeOWL
  The name of the OWL Plugin folder (subfolder of the plugins directory)
PLUGIN_TYPE - Static variable in interface edu.stanford.smi.protegex.owl.repository.factory.RepositoryFactoryPlugin
PLUGIN_TYPE - Static variable in interface edu.stanford.smi.protegex.owl.ui.repository.wizard.RepositoryCreatorWizardPlugin
PluginPanelHolder - Class in edu.stanford.smi.protegex.owl.ui.repository.wizard
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Sep 26, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
PluginPanelHolder(RepositoryWizard, OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.ui.repository.wizard.PluginPanelHolder
plugins() - Static method in class edu.stanford.smi.protegex.owl.ui.components.triples.AbstractTriplesComponent
POPUP_TITLE - Static variable in class edu.stanford.smi.protegex.owl.ui.conditions.PropertySuggestionPopup
POPUP_WIDTH - Static variable in class edu.stanford.smi.protegex.owl.ui.conditions.PropertySuggestionPopup
postLogRecord(ReasonerLogRecord) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.log.ReasonerLogger
postLogRecord(ReasonerLogRecord) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.AbstractReasonerTask
postLogRecord(ReasonerLogRecord) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.AbstractReasonerTask
postLogRecord(ReasonerLogRecord) - Method in class edu.stanford.smi.protegex.owl.inference.ui.ReasonerProgressModalDialog
postProcessChange(RDFSNamedClass) - Method in class edu.stanford.smi.protegex.owl.ui.properties.types.AbstractPropertyTypesWidget
  Can be overloaded to perform operations after the type has changed.
postProcessChange(RDFSNamedClass) - Method in class edu.stanford.smi.protegex.owl.ui.properties.types.OWLObjectPropertyTypesWidget
POW - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.CoreBuiltIns
PREDEFINED_PROFILE_URI_KEY - Static variable in class edu.stanford.smi.protegex.owl.ui.profiles.ProfilesManager
PREDICATE - Static variable in interface edu.stanford.smi.protegex.owl.model.RDFNames.Slot
PREFERENCES_GROUP - Static variable in interface edu.stanford.smi.protegex.owl.ui.actions.OWLModelActionConstants
PreferencesAction - Class in edu.stanford.smi.protegex.owl.ui.menu.preferences
PreferencesAction() - Constructor for class edu.stanford.smi.protegex.owl.ui.menu.preferences.PreferencesAction
PreferencesPanel - Class in edu.stanford.smi.protegex.owl.ui.menu.preferences
  This dialog allows the user to edit general owl settings.
PreferencesPanel(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.ui.menu.preferences.PreferencesPanel
PREFERRED_WIDTH - Static variable in class edu.stanford.smi.protegex.owl.ui.explorer.filter.ValidClassesPanel
preferredHeight - Static variable in class edu.stanford.smi.protegex.owl.ui.forms.FormsNames
preferredWidth - Static variable in class edu.stanford.smi.protegex.owl.ui.forms.FormsNames
PREFIX - Static variable in class edu.stanford.smi.protegex.owl.model.ProtegeNames
PREFIX - Static variable in interface edu.stanford.smi.protegex.owl.model.XSDNames
PREFIX - Static variable in class edu.stanford.smi.protegex.owl.model.XSPNames
  Deprecated. use `XSPNames.DEFAULT_PREFIX`
PREFIX - Static variable in class edu.stanford.smi.protegex.owl.testing.constraints.SPARQLAssertTest
PREFIX - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
PREFIX_COLUMN - Static variable in class edu.stanford.smi.protegex.owl.ui.metadatatab.imports.wizard.AddedPrefixesTableModel
PREFIX_LOCALNAME_SEPARATOR - Static variable in class edu.stanford.smi.protegex.owl.model.ProtegeNames
PREFIX_MODE - Static variable in class edu.stanford.smi.protegex.owl.javacode.ProjectBasedJavaCodeGeneratorOptions
PREFIX_TO_NAME_SEPARATOR - Static variable in class edu.stanford.smi.protegex.owl.model.NamespaceUtil
prefixAdded(String) - Method in class edu.stanford.smi.protegex.owl.model.NamespaceManagerAdapter
prefixAdded(String) - Method in interface edu.stanford.smi.protegex.owl.model.NamespaceManagerListener
prefixChanged(String, String, String) - Method in class edu.stanford.smi.protegex.owl.model.NamespaceManagerAdapter
prefixChanged(String, String, String) - Method in interface edu.stanford.smi.protegex.owl.model.NamespaceManagerListener
PrefixesPanel - Class in edu.stanford.smi.protegex.owl.ui.metadatatab.prefixes
  A JPanel hosting a JTable of all prefixes and their namespaces.
PrefixesPanel(OWLOntology) - Constructor for class edu.stanford.smi.protegex.owl.ui.metadatatab.prefixes.PrefixesPanel
PrefixesTableModel - Class in edu.stanford.smi.protegex.owl.ui.metadatatab.prefixes
  A TableModel for editing prefixes in an OWLModel.
PrefixesTableModel(OWLOntology) - Constructor for class edu.stanford.smi.protegex.owl.ui.metadatatab.prefixes.PrefixesTableModel
PrefixMatrixColumn - Class in edu.stanford.smi.protegex.owl.ui.matrix
PrefixMatrixColumn() - Constructor for class edu.stanford.smi.protegex.owl.ui.matrix.PrefixMatrixColumn
prefixRemoved(String) - Method in class edu.stanford.smi.protegex.owl.model.NamespaceManagerAdapter
prefixRemoved(String) - Method in interface edu.stanford.smi.protegex.owl.model.NamespaceManagerListener
prepareEditor(TableCellEditor, int, int) - Method in class edu.stanford.smi.protegex.owl.ui.owltable.SymbolTable
prepareRenderer(TableCellRenderer, int, int) - Method in class edu.stanford.smi.protegex.owl.ui.owltable.SymbolTable
prepareWidgetsForSave(OWLModel) - Static method in class edu.stanford.smi.protegex.owl.ui.menu.OWLMenuProjectPlugin
  Should be called prior to saving a Project in order to remove widgets from the file.
prepareWriter(RDFWriter, String, String) - Static method in class edu.stanford.smi.protegex.owl.jena.Jena
  Deprecated. - Use `Jena.prepareWriter(RDFWriter writer, String language, String namespace, String xmlBase)`
prepareWriter(RDFWriter, String, String, String) - Static method in class edu.stanford.smi.protegex.owl.jena.Jena
preprocess(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.model.classparser.compact.OWLCompactParserUtil
  Detects usages of xsd: types as expression fillers, and makes sure that they start with xsd:.
preprocessFiller(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.model.classparser.compact.OWLCompactParserUtil
prevCharIsCR - Variable in class edu.stanford.smi.protegex.owl.model.classparser.compact.JavaCharStream
prevCharIsCR - Variable in class edu.stanford.smi.protegex.owl.model.classparser.dl.JavaCharStream
prevCharIsCR - Variable in class edu.stanford.smi.protegex.owl.model.classparser.manchester.JavaCharStream
prevCharIsLF - Variable in class edu.stanford.smi.protegex.owl.model.classparser.compact.JavaCharStream
prevCharIsLF - Variable in class edu.stanford.smi.protegex.owl.model.classparser.dl.JavaCharStream
prevCharIsLF - Variable in class edu.stanford.smi.protegex.owl.model.classparser.manchester.JavaCharStream
previouslyEditedCls - Variable in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTableModel
  Needed to select the most recently edited row after closing the expression editor
prevPressed() - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.imports.wizard.ImportVerificationPage
prevPressed() - Method in class edu.stanford.smi.protegex.owl.ui.wizard.OWLWizardPage
PRIMITIVE_OWL_CLASS - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
PrimitiveSubclassesDisjointTest - Class in edu.stanford.smi.protegex.owl.testing.style
  Normalisation rule - all primitive siblings should be disjoint.
PrimitiveSubclassesDisjointTest() - Constructor for class edu.stanford.smi.protegex.owl.testing.style.PrimitiveSubclassesDisjointTest
PRINT_LOAD_TRIPLES_LOG - Static variable in class edu.stanford.smi.protegex.owl.jena.parser.ProtegeOWLParser
PRINT_LOAD_TRIPLES_LOG_INCREMENT - Static variable in class edu.stanford.smi.protegex.owl.jena.parser.ProtegeOWLParser
printImplementationCode(PrintWriter, RDFSNamedClass) - Method in class edu.stanford.smi.protegex.owl.javacode.JavaCodeGenerator
printImplementationPropertyCode(PrintWriter, RDFPropertyAtClassCode) - Method in class edu.stanford.smi.protegex.owl.javacode.JavaCodeGenerator
printInterfaceCode(PrintWriter, RDFSNamedClass) - Method in class edu.stanford.smi.protegex.owl.javacode.JavaCodeGenerator
printRDFList(RDFList) - Static method in class edu.stanford.smi.protegex.owl.ui.conditions.OWLClassUtil
  Returns a string with the user-friendly representation of the rdf:list given as argument
printStackTrace() - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
printUserImplementationCode(PrintWriter, RDFSNamedClass) - Method in class edu.stanford.smi.protegex.owl.javacode.JavaCodeGenerator
printUserInterfaceCode(PrintWriter, RDFSNamedClass) - Method in class edu.stanford.smi.protegex.owl.javacode.JavaCodeGenerator
PRIOR_VERSION - Static variable in interface edu.stanford.smi.protegex.owl.model.OWLNames.Slot
PROBE_CLASS - Static variable in class edu.stanford.smi.protegex.owl.model.ProtegeNames
processDocument(Document) - Method in class edu.stanford.smi.protegex.owl.inference.dig.reasoner.DIGReasonerIdentity
processFile(File) - Method in class edu.stanford.smi.protegex.owl.repository.impl.AbstractLocalRepository
processor - Variable in class edu.stanford.smi.protegex.owl.jena.parser.AbstractStatefulTripleProcessor
processTriple(AResource, AResource, AResource, TripleStore, boolean) - Method in class edu.stanford.smi.protegex.owl.jena.parser.TripleProcessor
processTriple(AResource, AResource, ALiteral, TripleStore, boolean) - Method in class edu.stanford.smi.protegex.owl.jena.parser.TripleProcessor
processUndefTriples() - Method in class edu.stanford.smi.protegex.owl.jena.parser.TripleProcessor
Product - Interface in edu.stanford.smi.protegex.owlx.examples.javaDemo.model
  Generated by Protege-OWL (http://protege.stanford.edu/plugins/owl).
Profile - Static variable in class edu.stanford.smi.protegex.owl.ui.profiles.OWLProfiles
ProfileSelectionPanel - Class in edu.stanford.smi.protegex.owl.ui.profiles
ProfileSelectionPanel(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.ui.profiles.ProfileSelectionPanel
ProfileSelectionWizardPage - Class in edu.stanford.smi.protegex.owl.ui.profiles
ProfileSelectionWizardPage(Wizard, OWLFilesPlugin) - Constructor for class edu.stanford.smi.protegex.owl.ui.profiles.ProfileSelectionWizardPage
ProfilesManager - Class in edu.stanford.smi.protegex.owl.ui.profiles
  A singleton that provides access to the language profile of an OWLModel and buffers recently loaded profiles.
ProfilesManager() - Constructor for class edu.stanford.smi.protegex.owl.ui.profiles.ProfilesManager
ProgrammaticSelectionEvent - Class in edu.stanford.smi.protegex.owl.ui.navigation
  A SelectionEvent issued by NavigationHistorySelectables indicating that the selection has only changed as a result of a programmatic call (in contrast to a user action).
ProgrammaticSelectionEvent(Selectable) - Constructor for class edu.stanford.smi.protegex.owl.ui.navigation.ProgrammaticSelectionEvent
progressChanged(ReasonerTaskEvent) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.ClassifyTaxonomyTask
progressChanged(ReasonerTaskEvent) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.ClassifyTaxonomyTask
progressChanged(ReasonerTaskEvent) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.ReasonerTaskAdapter
progressChanged(ReasonerTaskEvent) - Method in interface edu.stanford.smi.protegex.owl.inference.protegeowl.task.ReasonerTaskListener
ProgressDisplay - Interface in edu.stanford.smi.protegex.owl.jena.creator
  An interface for objects that can display the progress of the JenaCreator.
ProgressDisplayDialog - Class in edu.stanford.smi.protegex.owl.ui
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Sep 12, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
ProgressDisplayDialog() - Constructor for class edu.stanford.smi.protegex.owl.ui.ProgressDisplayDialog
progressIndeterminateChanged(ReasonerTaskEvent) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.ClassifyTaxonomyTask
progressIndeterminateChanged(ReasonerTaskEvent) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.ClassifyTaxonomyTask
progressIndeterminateChanged(ReasonerTaskEvent) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.ReasonerTaskAdapter
progressIndeterminateChanged(ReasonerTaskEvent) - Method in interface edu.stanford.smi.protegex.owl.inference.protegeowl.task.ReasonerTaskListener
ProgressManager - Interface in edu.stanford.smi.protegex.owl.model
  An interface for objects that can manage the status and cancellation of a longish operation on an OWLModel.
project - Variable in class edu.stanford.smi.protegex.owl.database.creator.AbstractOwlDatabaseCreator
PROJECT_MENU - Static variable in class edu.stanford.smi.protegex.owl.ui.actions.AbstractOWLModelAction
ProjectBasedEMFGeneratorOptions - Class in edu.stanford.smi.protegex.owl.emf
ProjectBasedEMFGeneratorOptions(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.emf.ProjectBasedEMFGeneratorOptions
ProjectBasedJavaCodeGeneratorOptions - Class in edu.stanford.smi.protegex.owl.javacode
ProjectBasedJavaCodeGeneratorOptions(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.javacode.ProjectBasedJavaCodeGeneratorOptions
projectListener - Variable in class edu.stanford.smi.protegex.owl.inference.reasoner.AbstractProtegeReasoner
ProjectRepositoriesPanel - Class in edu.stanford.smi.protegex.owl.ui.repository
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Sep 27, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
ProjectRepositoriesPanel(OWLModel, RepositoryManager) - Constructor for class edu.stanford.smi.protegex.owl.ui.repository.ProjectRepositoriesPanel
properties - Static variable in class edu.stanford.smi.protegex.owl.ui.forms.FormsNames
PropertiesClassDefinitionWidget - Class in edu.stanford.smi.protegex.owl.ui.cls
PropertiesClassDefinitionWidget() - Constructor for class edu.stanford.smi.protegex.owl.ui.cls.PropertiesClassDefinitionWidget
PropertiesClassDefinitionWidgetType - Class in edu.stanford.smi.protegex.owl.ui.cls
PropertiesClassDefinitionWidgetType() - Constructor for class edu.stanford.smi.protegex.owl.ui.cls.PropertiesClassDefinitionWidgetType
PropertiesDefinitionTableModel - Class in edu.stanford.smi.protegex.owl.ui.clsdesc
  A ClassDescriptionTableModel that displays those parts of a class definition that are not restrictions.
PropertiesDefinitionTableModel() - Constructor for class edu.stanford.smi.protegex.owl.ui.clsdesc.PropertiesDefinitionTableModel
PropertiesSuperclassesTableModel - Class in edu.stanford.smi.protegex.owl.ui.clsdesc
  A ClassDescriptionTableModel that displays all direct superclasses that are not restrictions.
PropertiesSuperclassesTableModel() - Constructor for class edu.stanford.smi.protegex.owl.ui.clsdesc.PropertiesSuperclassesTableModel
PropertiesSuperclassesWidget - Class in edu.stanford.smi.protegex.owl.ui.clsdesc
  A ClassDescriptionWidget that toggles between a PropertiesSuperclassesTableModel and a PropertiesDefinitionTableModel depending on whether the current class is defined or not.
PropertiesSuperclassesWidget() - Constructor for class edu.stanford.smi.protegex.owl.ui.clsdesc.PropertiesSuperclassesWidget
PropertiesTreeFinder - Class in edu.stanford.smi.protegex.owl.ui.search
  This is currently a wrapper of the core Protege SlotsTreeFinder, so that we have a greater flexibility with respect to handling search results etc.
PropertiesTreeFinder(OWLModel, JTree) - Constructor for class edu.stanford.smi.protegex.owl.ui.search.PropertiesTreeFinder
PropertiesTreeFinder(OWLModel, JTree, String) - Constructor for class edu.stanford.smi.protegex.owl.ui.search.PropertiesTreeFinder
PROPERTY - Static variable in interface edu.stanford.smi.protegex.owl.model.RDFNames.Cls
PROPERTY - Static variable in interface edu.stanford.smi.protegex.owl.model.RDFNames.ClsID
Property - Static variable in class edu.stanford.smi.protegex.owl.ui.forms.FormsNames
PROPERTY_FRAME - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
property_list - Static variable in class edu.stanford.smi.protegex.owl.ui.forms.FormsNames
PROPERTY_MATRIX - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
PROPERTY_NAME - Static variable in class edu.stanford.smi.protegex.owl.ui.search.finder.FindResult
PROPERTY_PREDICATE - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.Slot
Property_that_is_also_a_Class - Static variable in class edu.stanford.smi.protegex.owl.ui.profiles.OWLProfiles
Property_Type - Static variable in class edu.stanford.smi.protegex.owl.ui.profiles.OWLProfiles
propertyAction - Variable in class edu.stanford.smi.protegex.owl.ui.code.SymbolPanel
PropertyAdapter - Class in edu.stanford.smi.protegex.owl.model.event
PropertyAdapter() - Constructor for class edu.stanford.smi.protegex.owl.model.event.PropertyAdapter
PropertyCharacteristicsMatrixColumn - Class in edu.stanford.smi.protegex.owl.ui.matrix.property
PropertyCharacteristicsMatrixColumn() - Constructor for class edu.stanford.smi.protegex.owl.ui.matrix.property.PropertyCharacteristicsMatrixColumn
PropertyConditionsDisplay - Interface in edu.stanford.smi.protegex.owl.ui.conditions
  An interface for components that can display a given property.
propertyCreated(RDFProperty, KnowledgeBaseEvent) - Method in class edu.stanford.smi.protegex.owl.model.event.ModelAdapter
propertyCreated(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.model.event.ModelAdapter
propertyCreated(RDFProperty) - Method in interface edu.stanford.smi.protegex.owl.model.event.ModelListener
  Called after a property has been created.
propertyCreated(RDFProperty) - Method in interface edu.stanford.smi.protegex.owl.ui.clsproperties.CreatePropertyAction.CallBack
propertyDeleted(RDFProperty, KnowledgeBaseEvent) - Method in class edu.stanford.smi.protegex.owl.model.event.ModelAdapter
propertyDeleted(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.model.event.ModelAdapter
propertyDeleted(RDFProperty) - Method in interface edu.stanford.smi.protegex.owl.model.event.ModelListener
  Called after a property has been deleted.
PropertyDomainEmptyTest - Class in edu.stanford.smi.protegex.owl.testing.sanity
PropertyDomainEmptyTest() - Constructor for class edu.stanford.smi.protegex.owl.testing.sanity.PropertyDomainEmptyTest
PropertyDomainMatrixColumn - Class in edu.stanford.smi.protegex.owl.ui.matrix.property
PropertyDomainMatrixColumn() - Constructor for class edu.stanford.smi.protegex.owl.ui.matrix.property.PropertyDomainMatrixColumn
PropertyDomainRedundancyTest - Class in edu.stanford.smi.protegex.owl.testing.sanity
PropertyDomainRedundancyTest() - Constructor for class edu.stanford.smi.protegex.owl.testing.sanity.PropertyDomainRedundancyTest
PropertyFormComponent - Class in edu.stanford.smi.protegex.owl.ui.classform.component.property
  A FormComponent displaying the fillers of quantifier restrictions.
PropertyFormComponent(RDFProperty) - Constructor for class edu.stanford.smi.protegex.owl.ui.classform.component.property.PropertyFormComponent
PropertyFormTable - Class in edu.stanford.smi.protegex.owl.ui.classform.component.property
  A SymbolTable showing a PropertyFormTableModel.
PropertyFormTable(PropertyFormTableModel, OWLNamedClass, RDFProperty) - Constructor for class edu.stanford.smi.protegex.owl.ui.classform.component.property.PropertyFormTable
PropertyFormTableModel - Class in edu.stanford.smi.protegex.owl.ui.classform.component.property
  A TableModel displaying one column containing the fillers of someValuesFrom restrictions at a given class/property pair.
PropertyFormTableModel(OWLNamedClass, RDFProperty) - Constructor for class edu.stanford.smi.protegex.owl.ui.classform.component.property.PropertyFormTableModel
  Constructs a new PropertyFormTableModel with no definition (only necessary conditions).
PropertyFormTableModel(OWLNamedClass, RDFProperty, RDFSClass) - Constructor for class edu.stanford.smi.protegex.owl.ui.classform.component.property.PropertyFormTableModel
  Creates a new PropertyFormTableModel with an (optional) definition.
PropertyList - Static variable in class edu.stanford.smi.protegex.owl.ui.forms.FormsNames
propertyListener - Variable in class edu.stanford.smi.protegex.owl.inference.reasoner.AbstractProtegeReasoner
PropertyListener - Interface in edu.stanford.smi.protegex.owl.model.event
  A listener for property-related events.
propertyListener - Variable in class edu.stanford.smi.protegex.owl.ui.properties.OWLPropertySubpropertyRoot
PropertyMatrixAction - Class in edu.stanford.smi.protegex.owl.ui.matrix.property
PropertyMatrixAction(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.ui.matrix.property.PropertyMatrixAction
PropertyMatrixTableModel - Class in edu.stanford.smi.protegex.owl.ui.matrix.property
PropertyMatrixTableModel(OWLModel, MatrixFilter) - Constructor for class edu.stanford.smi.protegex.owl.ui.matrix.property.PropertyMatrixTableModel
PropertyRangeMatrixColumn - Class in edu.stanford.smi.protegex.owl.ui.matrix.property
PropertyRangeMatrixColumn() - Constructor for class edu.stanford.smi.protegex.owl.ui.matrix.property.PropertyRangeMatrixColumn
PropertyRangeRedundancyTest - Class in edu.stanford.smi.protegex.owl.testing.sanity
PropertyRangeRedundancyTest() - Constructor for class edu.stanford.smi.protegex.owl.testing.sanity.PropertyRangeRedundancyTest
PropertyRestrictionsTree - Class in edu.stanford.smi.protegex.owl.ui.clsproperties
PropertyRestrictionsTree(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.ui.clsproperties.PropertyRestrictionsTree
PropertyRestrictionsTree(OWLModel, OWLNamedClass) - Constructor for class edu.stanford.smi.protegex.owl.ui.clsproperties.PropertyRestrictionsTree
PropertyRestrictionsTreeRenderer - Class in edu.stanford.smi.protegex.owl.ui.clsproperties
PropertyRestrictionsTreeRenderer(boolean, boolean) - Constructor for class edu.stanford.smi.protegex.owl.ui.clsproperties.PropertyRestrictionsTreeRenderer
PropertyRestrictionsTreeWidget - Class in edu.stanford.smi.protegex.owl.ui.clsproperties
PropertyRestrictionsTreeWidget() - Constructor for class edu.stanford.smi.protegex.owl.ui.clsproperties.PropertyRestrictionsTreeWidget
PropertySuggestionPopup - Class in edu.stanford.smi.protegex.owl.ui.conditions
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Nov 25, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
PropertySuggestionPopup(Window, ConditionsTable) - Constructor for class edu.stanford.smi.protegex.owl.ui.conditions.PropertySuggestionPopup
PropertyTreeNode - Class in edu.stanford.smi.protegex.owl.ui.clsproperties
PropertyTreeNode(PropertyRestrictionsTree, OWLNamedClass, RDFProperty, boolean) - Constructor for class edu.stanford.smi.protegex.owl.ui.clsproperties.PropertyTreeNode
PropertyTreeNode(PropertyRestrictionsTree, OWLNamedClass, RDFProperty, boolean, List<ExpressionInfo<OWLRestriction>>) - Constructor for class edu.stanford.smi.protegex.owl.ui.clsproperties.PropertyTreeNode
PropertyValueAdapter - Class in edu.stanford.smi.protegex.owl.model.event
PropertyValueAdapter() - Constructor for class edu.stanford.smi.protegex.owl.model.event.PropertyValueAdapter
propertyValueChanged(RDFResource, RDFProperty, Collection, FrameEvent) - Method in class edu.stanford.smi.protegex.owl.model.event.PropertyValueAdapter
propertyValueChanged(RDFResource, RDFProperty, Collection) - Method in class edu.stanford.smi.protegex.owl.model.event.PropertyValueAdapter
propertyValueChanged(RDFResource, RDFProperty, Collection) - Method in interface edu.stanford.smi.protegex.owl.model.event.PropertyValueListener
  Called after the value of a property has changed at a given resource.
PropertyValueEditor - Interface in edu.stanford.smi.protegex.owl.ui.editors
  An object that can be used to customize the appearance and behavior of (datatype) values in visual editors.
PropertyValueEditorManager - Class in edu.stanford.smi.protegex.owl.ui.editors
PropertyValueEditorManager() - Constructor for class edu.stanford.smi.protegex.owl.ui.editors.PropertyValueEditorManager
propertyValueListener - Variable in class edu.stanford.smi.protegex.owl.inference.reasoner.AbstractProtegeReasoner
PropertyValueListener - Interface in edu.stanford.smi.protegex.owl.model.event
PropertyValuesComponent - Interface in edu.stanford.smi.protegex.owl.ui.components
PropertyValueValidator - Interface in edu.stanford.smi.protegex.owl.model.validator
  An interface for objects that can validate whether a certain value would be a valid object for a given subject/predicate pair.
PropertyWidget - Interface in edu.stanford.smi.protegex.owl.ui.widget
PROSE_PROPERTY - Static variable in class edu.stanford.smi.protegex.owl.ui.menu.OWLMenuProjectPlugin
ProseGen - Class in edu.stanford.smi.protegex.owl.prose
  Created by IntelliJ IDEA.
Protege2Jena - Class in edu.stanford.smi.protegex.owl.jena.protege2jena
  An object that can convert an OWLModel into an OntModel.
PROTEGE_FORMS_FILENAME - Static variable in class edu.stanford.smi.protegex.owl.ui.forms.ProtegeFormsNames
PROTEGE_FORMS_ONTOLOGY - Static variable in class edu.stanford.smi.protegex.owl.ui.forms.ProtegeFormsNames
PROTEGE_OWL_NAMESPACE - Static variable in class edu.stanford.smi.protegex.owl.model.ProtegeNames
PROTEGE_OWL_ONTOLOGY - Static variable in class edu.stanford.smi.protegex.owl.model.ProtegeNames
PROTEGE_PREFIX - Static variable in class edu.stanford.smi.protegex.owl.model.ProtegeNames
PROTEGE_SYSTEM_FORMS_URI - Static variable in class edu.stanford.smi.protegex.owl.ui.forms.AbsoluteFormsGenerator
ProtegeCapabilities - Class in edu.stanford.smi.protegex.owl.jena.graph
ProtegeCapabilities() - Constructor for class edu.stanford.smi.protegex.owl.jena.graph.ProtegeCapabilities
ProtegeCls - Interface in edu.stanford.smi.protegex.owl.model
ProtegeClsListener - Interface in edu.stanford.smi.protegex.owl.model.event
ProtegeDIGReasoner - Interface in edu.stanford.smi.protegex.owl.inference.dig
ProtegeFormsNames - Class in edu.stanford.smi.protegex.owl.ui.forms
  Vocabulary definitions from file:/C:/protege-owl/owl/schemagen-temp.owl
ProtegeFormsNames() - Constructor for class edu.stanford.smi.protegex.owl.ui.forms.ProtegeFormsNames
ProtegeFrameListener - Interface in edu.stanford.smi.protegex.owl.model.event
  A wrapper to deprecate most methods of the Protege FrameListener interface.
ProtegeFromOWLFilesCreateProjectPlugin - Class in edu.stanford.smi.protegex.owl.storage
ProtegeFromOWLFilesCreateProjectPlugin() - Constructor for class edu.stanford.smi.protegex.owl.storage.ProtegeFromOWLFilesCreateProjectPlugin
ProtegeFromOWLFilesWizardPage - Class in edu.stanford.smi.protegex.owl.ui.jena
  The WizardPage used in the Protege-from-OWL create dialog.
ProtegeFromOWLFilesWizardPage(Wizard, OWLFilesPlugin) - Constructor for class edu.stanford.smi.protegex.owl.ui.jena.ProtegeFromOWLFilesWizardPage
ProtegeGraph - Class in edu.stanford.smi.protegex.owl.jena.graph
  An experimental implementation of the Jena Graph interface so that a Protege triple store is wrapped.
ProtegeGraph(OWLModel, TripleStore) - Constructor for class edu.stanford.smi.protegex.owl.jena.graph.ProtegeGraph
ProtegeInstance - Interface in edu.stanford.smi.protegex.owl.model
  An interface to wrap the Protege Instance and Frame interfaces for OWL.
ProtegeInstanceListener - Interface in edu.stanford.smi.protegex.owl.model.event
ProtegeJavaMapping - Class in edu.stanford.smi.protegex.owl.javacode
ProtegeJavaMapping() - Constructor for class edu.stanford.smi.protegex.owl.javacode.ProtegeJavaMapping
ProtegeKnowledgeBase - Interface in edu.stanford.smi.protegex.owl.model
ProtegeKnowledgeBaseListener - Interface in edu.stanford.smi.protegex.owl.model.event
ProtegeNames - Class in edu.stanford.smi.protegex.owl.model
  The namespaces and names from the Protege meta ontology.
ProtegeNames() - Constructor for class edu.stanford.smi.protegex.owl.model.ProtegeNames
ProtegeNames.Cls - Interface in edu.stanford.smi.protegex.owl.model
ProtegeNames.Slot - Interface in edu.stanford.smi.protegex.owl.model
ProtegeOWL - Class in edu.stanford.smi.protegex.owl
  A singleton that provides several generic services such as creating new OWLModels.
ProtegeOWL() - Constructor for class edu.stanford.smi.protegex.owl.ProtegeOWL
ProtegeOWLParser - Class in edu.stanford.smi.protegex.owl.jena.parser
  An OWL parser that reads an OWL stream triple-by-triple and writes the corresponding Protege-OWL Triples into one or more TripleStores.
ProtegeOWLParser(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.jena.parser.ProtegeOWLParser
ProtegeOWLParser.ARPInvokation - Interface in edu.stanford.smi.protegex.owl.jena.parser
  An interface needed as an abstraction of the various methods to invoke the Jena ARP (the various load methods with different parameters).
ProtegeOWLParserException - Exception in edu.stanford.smi.protegex.owl.jena.parser
ProtegeOWLParserException(Throwable, String, String) - Constructor for exception edu.stanford.smi.protegex.owl.jena.parser.ProtegeOWLParserException
ProtegeOWLParserLogger - Interface in edu.stanford.smi.protegex.owl.jena.parser
ProtegeOWLPluginFolderRepository - Class in edu.stanford.smi.protegex.owl.repository.impl
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Sep 18, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
ProtegeOWLPluginFolderRepository() - Constructor for class edu.stanford.smi.protegex.owl.repository.impl.ProtegeOWLPluginFolderRepository
ProtegeOWLReasoner - Interface in edu.stanford.smi.protegex.owl.inference.protegeowl
  Deprecated. - Use `ProtegeReasoner`
ProtegePrefixMapping - Class in edu.stanford.smi.protegex.owl.jena.graph
ProtegePrefixMapping(OWLModel, TripleStore) - Constructor for class edu.stanford.smi.protegex.owl.jena.graph.ProtegePrefixMapping
ProtegeReasoner - Interface in edu.stanford.smi.protegex.owl.inference.reasoner
ProtegeReasonerException - Exception in edu.stanford.smi.protegex.owl.inference.reasoner.exception
ProtegeReasonerException(String) - Constructor for exception edu.stanford.smi.protegex.owl.inference.reasoner.exception.ProtegeReasonerException
ProtegeReasonerException(String, Throwable) - Constructor for exception edu.stanford.smi.protegex.owl.inference.reasoner.exception.ProtegeReasonerException
ProtegeSaver - Class in edu.stanford.smi.protegex.owl.storage
  This class can be used to convert a legacy Protege ontology (in e.g.
ProtegeSaver(KnowledgeBase, OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.storage.ProtegeSaver
ProtegeSaver(KnowledgeBase, OWLModel, boolean) - Constructor for class edu.stanford.smi.protegex.owl.storage.ProtegeSaver
ProtegeSettingsPanel - Class in edu.stanford.smi.protegex.owl.ui.menu.preferences
  A JComponent that allows to specify Protege specific features in an OWLModel.
ProtegeSlot - Interface in edu.stanford.smi.protegex.owl.model
  An interface to wrap the Protege Slot interface for OWL.
ProtegeSlotListener - Interface in edu.stanford.smi.protegex.owl.model.event
  An interface that wraps the core Protege SlotListener to declare those methods deprecated that should not be used with OWL.
ProtegeUI - Class in edu.stanford.smi.protegex.owl.ui
  A utility class that can be used to access and manipulate the high-level Swing containers of Protege for a given Project.
ProtegeUI() - Constructor for class edu.stanford.smi.protegex.owl.ui.ProtegeUI
ProtegeWriterSettings - Class in edu.stanford.smi.protegex.owl.writer.rdfxml.util
ProtegeWriterSettings(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.writer.rdfxml.util.ProtegeWriterSettings
Purchase - Interface in edu.stanford.smi.protegex.owlx.examples.javaDemo.model
  Generated by Protege-OWL (http://protege.stanford.edu/plugins/owl).
putOntology(URI, File) - Method in class edu.stanford.smi.protegex.owl.repository.impl.AbstractLocalRepository

## Q

Q - Static variable in class edu.stanford.smi.protegex.owl.model.util.DLExpressivityChecker
qnameFor(String) - Method in class edu.stanford.smi.protegex.owl.jena.graph.ProtegePrefixMapping
Qualified_Cardinality_Restrictions - Static variable in class edu.stanford.smi.protegex.owl.ui.profiles.OWLProfiles
QuantifierRestrictionUpdater - Class in edu.stanford.smi.protegex.owl.model.framestore.updater
QUERY_GROUP - Static variable in interface edu.stanford.smi.protegex.owl.ui.actions.OWLModelActionConstants
QueryClassesExample - Class in edu.stanford.smi.protegex.owlx.examples
QueryClassesExample() - Constructor for class edu.stanford.smi.protegex.owlx.examples.QueryClassesExample
queryHandler() - Method in class edu.stanford.smi.protegex.owl.jena.graph.ProtegeGraph
QueryResults - Interface in edu.stanford.smi.protegex.owl.model.query
  An object wrapping the results of a query.
QueryTripleAction - Class in edu.stanford.smi.protegex.owl.ui.query
QueryTripleAction() - Constructor for class edu.stanford.smi.protegex.owl.ui.query.QueryTripleAction
quoteIfNeeded(String) - Static method in class edu.stanford.smi.protegex.owl.model.classparser.ParserUtils
quoteNeeded(String) - Static method in class edu.stanford.smi.protegex.owl.model.classparser.ParserUtils

## R

R_ANCESTORS - Static variable in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGVocabulary.Ask
R_CHILDREN - Static variable in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGVocabulary.Ask
R_DESCENDANTS - Static variable in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGVocabulary.Ask
R_PARENTS - Static variable in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGVocabulary.Ask
RANGE - Static variable in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGVocabulary.Tell
RANGE - Static variable in interface edu.stanford.smi.protegex.owl.model.RDFSNames.Slot
RANGE - Static variable in class edu.stanford.smi.protegex.owl.ui.search.FindUsageTableItem
RANGE_INT - Static variable in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGVocabulary.Tell
RANGE_STRING - Static variable in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGVocabulary.Tell
RangeUpdateFrameStore - Class in edu.stanford.smi.protegex.owl.model.framestore
RangeUpdateFrameStore(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.model.framestore.RangeUpdateFrameStore
rangeWidget - Variable in class edu.stanford.smi.protegex.owl.ui.properties.range.FacetsPanel
RATOM - Static variable in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGVocabulary.Language
RDF - Static variable in interface edu.stanford.smi.protegex.owl.model.RDFNames
RDF - Static variable in class edu.stanford.smi.protegex.owl.ui.profiles.OWLProfiles
RDF2OWL - Class in edu.stanford.smi.protegex.owl.jena.rdf2owl
  A class that can convert pure RDF statements from a Model into corresponding OWL statements.
RDF2OWL(Model) - Constructor for class edu.stanford.smi.protegex.owl.jena.rdf2owl.RDF2OWL
RDF_ANON_INDIVIDUAL - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
RDF_but_not_OWL - Static variable in class edu.stanford.smi.protegex.owl.ui.profiles.OWLProfiles
RDF_DATATYPE - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
RDF_INDIVIDUAL - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
RDF_INDIVIDUAL_FRAME - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
RDF_INDIVIDUALS - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
RDF_NAMESPACE - Static variable in interface edu.stanford.smi.protegex.owl.model.RDFNames
RDF_PREFIX - Static variable in interface edu.stanford.smi.protegex.owl.model.RDFNames
RDF_PROPERTY - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
RDF_PROPERTY_INHERITED - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
RDF_TYPE_INVERSE - Static variable in class edu.stanford.smi.protegex.owl.model.ProtegeNames
  Not represented as a property yet, but in the future the :DIRECT-INSTANCES system slot could be mapped into this, to access the inverses of rdf:type
RDF_TYPE_INVERSE_PREFIXED - Static variable in class edu.stanford.smi.protegex.owl.model.ProtegeNames
RDFAxiomRenderer - Class in edu.stanford.smi.protegex.owl.writer.rdfxml.renderer
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: March 22, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm

  An RDF/XML renderer that renders axioms for classes, properties and individuals.
RDFAxiomRenderer(RDFResource, TripleStore, XMLWriter) - Constructor for class edu.stanford.smi.protegex.owl.writer.rdfxml.renderer.RDFAxiomRenderer
RDFAxiomRenderer(RDFResource, TripleStore, XMLWriter, boolean) - Constructor for class edu.stanford.smi.protegex.owl.writer.rdfxml.renderer.RDFAxiomRenderer
RDFAxiomRenderer() - Constructor for class edu.stanford.smi.protegex.owl.writer.rdfxml.renderer.RDFAxiomRenderer
RDFAxiomRenderer.RenderableAxiomsChecker - Class in edu.stanford.smi.protegex.owl.writer.rdfxml.renderer
RDFAxiomRenderer.RenderableAxiomsChecker() - Constructor for class edu.stanford.smi.protegex.owl.writer.rdfxml.renderer.RDFAxiomRenderer.RenderableAxiomsChecker
RDFExample - Class in edu.stanford.smi.protegex.owlx.examples
RDFExample() - Constructor for class edu.stanford.smi.protegex.owlx.examples.RDFExample
RDFExternalResource - Interface in edu.stanford.smi.protegex.owl.model
  An Instance that represents a reference to an external URI.
RDFIndividual - Interface in edu.stanford.smi.protegex.owl.model
  A simple OWL instance (i.e.
RDFList - Interface in edu.stanford.smi.protegex.owl.model
  An RDFResource represents an rdf:List.
RDFListComponent - Class in edu.stanford.smi.protegex.owl.ui.components.rdflist
  The default widget for properties of type rdf:List (or a subclass of rdf:List).
RDFListComponent(RDFProperty) - Constructor for class edu.stanford.smi.protegex.owl.ui.components.rdflist.RDFListComponent
RDFListComponent(RDFProperty, String) - Constructor for class edu.stanford.smi.protegex.owl.ui.components.rdflist.RDFListComponent
RDFListComponent(RDFProperty, String, boolean) - Constructor for class edu.stanford.smi.protegex.owl.ui.components.rdflist.RDFListComponent
RDFListWidget - Class in edu.stanford.smi.protegex.owl.ui.widget
  The default widget for properties of type rdf:List (or a subclass of rdf:List).
RDFListWidget() - Constructor for class edu.stanford.smi.protegex.owl.ui.widget.RDFListWidget
RDFListWidgetMetadata - Class in edu.stanford.smi.protegex.owl.ui.widget
RDFListWidgetMetadata() - Constructor for class edu.stanford.smi.protegex.owl.ui.widget.RDFListWidgetMetadata
RDFNames - Interface in edu.stanford.smi.protegex.owl.model
  Defines the names of the RDF(S) related parts of the OWL system ontology.
RDFNames.Cls - Interface in edu.stanford.smi.protegex.owl.model
RDFNames.ClsID - Interface in edu.stanford.smi.protegex.owl.model
RDFNames.Instance - Interface in edu.stanford.smi.protegex.owl.model
RDFNames.Slot - Interface in edu.stanford.smi.protegex.owl.model
RDFObject - Interface in edu.stanford.smi.protegex.owl.model
  The common type of RDFSLiteral and RDFResource.
RDFPropertiesComponent - Class in edu.stanford.smi.protegex.owl.ui.clsproperties
RDFPropertiesComponent(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.ui.clsproperties.RDFPropertiesComponent
RDFPropertiesTable - Class in edu.stanford.smi.protegex.owl.ui.clsproperties
RDFPropertiesTable() - Constructor for class edu.stanford.smi.protegex.owl.ui.clsproperties.RDFPropertiesTable
RDFPropertiesTableColumns - Interface in edu.stanford.smi.protegex.owl.ui.clsproperties
RDFPropertiesTableModel - Class in edu.stanford.smi.protegex.owl.ui.clsproperties
RDFPropertiesTableModel() - Constructor for class edu.stanford.smi.protegex.owl.ui.clsproperties.RDFPropertiesTableModel
RDFPropertiesWidget - Class in edu.stanford.smi.protegex.owl.ui.widget
RDFPropertiesWidget() - Constructor for class edu.stanford.smi.protegex.owl.ui.widget.RDFPropertiesWidget
RDFProperty - Interface in edu.stanford.smi.protegex.owl.model
  An RDFResource representing an rdf:Property or an instance of a subclass of rdf:Property such as owl:ObjectProperty and owl:FunctionalProperty.
RDFProperty_but_not_OWLProperty_Type - Static variable in class edu.stanford.smi.protegex.owl.ui.profiles.OWLProfiles
RDFPropertyAtClassCode - Class in edu.stanford.smi.protegex.owl.javacode
  An object representing metadata about a property at a class useful for Java code generation.
RDFPropertyAtClassCode(RDFSNamedClass, RDFProperty, boolean) - Constructor for class edu.stanford.smi.protegex.owl.javacode.RDFPropertyAtClassCode
RDFPropertyCode - Class in edu.stanford.smi.protegex.owl.javacode
  An object representing metadata about a property useful for Java code generation.
RDFPropertyCode(RDFProperty, boolean) - Constructor for class edu.stanford.smi.protegex.owl.javacode.RDFPropertyCode
RDFPropertyTest - Interface in edu.stanford.smi.protegex.owl.testing
RDFPropertyTypesWidget - Static variable in class edu.stanford.smi.protegex.owl.ui.forms.ProtegeFormsNames
RDFPropertyTypesWidget - Class in edu.stanford.smi.protegex.owl.ui.properties.types
  A AbstractPropertyTypesWidget for OWLDatatypeProperties.
RDFPropertyTypesWidget() - Constructor for class edu.stanford.smi.protegex.owl.ui.properties.types.RDFPropertyTypesWidget
RDFResource - Interface in edu.stanford.smi.protegex.owl.model
  The base interface for various OWL classes, slots and instances.
RDFResourceCollectionContentWriter - Class in edu.stanford.smi.protegex.owl.writer.rdfxml.rdfwriter
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: March 22, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
RDFResourceCollectionContentWriter(Collection, TripleStore) - Constructor for class edu.stanford.smi.protegex.owl.writer.rdfxml.rdfwriter.RDFResourceCollectionContentWriter
  Renders a collection of RDFResources (the axioms about the resources).
RDFResourceCollectionWriter - Class in edu.stanford.smi.protegex.owl.writer.rdfxml.rdfwriter
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Apr 7, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
RDFResourceCollectionWriter(OWLModel, TripleStore, Collection, Writer, boolean) - Constructor for class edu.stanford.smi.protegex.owl.writer.rdfxml.rdfwriter.RDFResourceCollectionWriter
RDFResourceCollectionWriter(OWLModel, TripleStore, Collection, XMLWriter, boolean) - Constructor for class edu.stanford.smi.protegex.owl.writer.rdfxml.rdfwriter.RDFResourceCollectionWriter
RDFResourceNameWidget - Class in edu.stanford.smi.protegex.owl.ui.metadata
  Deprecated. is no longer needed because the name is now shown in the header
RDFResourceNameWidget() - Constructor for class edu.stanford.smi.protegex.owl.ui.metadata.RDFResourceNameWidget
  Deprecated.
RDFResourceRenderer - Class in edu.stanford.smi.protegex.owl.writer.rdfxml.renderer
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: March 22, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm

  A renderer that translates various OWL and RDF classes and resource to RDF/XML.
RDFResourceRenderer(Visitable, TripleStore, XMLWriter) - Constructor for class edu.stanford.smi.protegex.owl.writer.rdfxml.renderer.RDFResourceRenderer
RDFResourceRenderer(Visitable, TripleStore, XMLWriter, boolean) - Constructor for class edu.stanford.smi.protegex.owl.writer.rdfxml.renderer.RDFResourceRenderer
rdfResources2OWLNamedClassNames(Collection<?>) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
rdfResources2OWLNamedClassURIs(Collection<?>) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
rdfResources2OWLPropertyURIs(Collection<?>) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
rdfResources2URIs(Collection<?>) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
RDFResourceTest - Interface in edu.stanford.smi.protegex.owl.testing
RDFS_METACLASS - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
RDFS_NAMED_CLASS - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
RDFS_NAMESPACE - Static variable in interface edu.stanford.smi.protegex.owl.model.RDFSNames
RDFS_PREFIX - Static variable in interface edu.stanford.smi.protegex.owl.model.RDFSNames
RDFS_RANGE - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
RDFS_SUB_CLASS_OF_INVERSE - Static variable in class edu.stanford.smi.protegex.owl.model.ProtegeNames
RDFS_SUB_CLASS_OF_INVERSE_PREFIXED - Static variable in class edu.stanford.smi.protegex.owl.model.ProtegeNames
RDFS_SUBCLASS_OF - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
RDFSClass - Interface in edu.stanford.smi.protegex.owl.model
  The base interface of the RDFS/OWL classes used by the OWL Plugin.
RDFSClass_but_not_OWLClass_Type - Static variable in class edu.stanford.smi.protegex.owl.ui.profiles.OWLProfiles
RDFSClassCode - Class in edu.stanford.smi.protegex.owl.javacode
  An object providing metadata about an RDFSNamedClass or OWLNamedClass, suitable for Java code generation.
RDFSClassCode(RDFSNamedClass, boolean) - Constructor for class edu.stanford.smi.protegex.owl.javacode.RDFSClassCode
RDFSClassTest - Interface in edu.stanford.smi.protegex.owl.testing
RDFSDatatype - Interface in edu.stanford.smi.protegex.owl.model
  An RDF resource representing an XML Schema datatype.
RDFSDatatypeExamples - Class in edu.stanford.smi.protegex.owlx.examples
  Illustrates the use of XML Schema datatypes, values and RDFS Literals.
RDFSDatatypeExamples() - Constructor for class edu.stanford.smi.protegex.owlx.examples.RDFSDatatypeExamples
RDFSDatatypeFactory - Interface in edu.stanford.smi.protegex.owl.model
  An interface for objects that can create user-defined XML Schema datatypes.
RDFSLabelExamples - Class in edu.stanford.smi.protegex.owlx.examples
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Jan 12, 2006

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
RDFSLabelExamples() - Constructor for class edu.stanford.smi.protegex.owlx.examples.RDFSLabelExamples
RDFSLiteral - Interface in edu.stanford.smi.protegex.owl.model
  An interface to represent an RDF/XML Schema literal.
RDFSNamedClass - Interface in edu.stanford.smi.protegex.owl.model
RDFSNamedClassMetadataWidget - Class in edu.stanford.smi.protegex.owl.ui.metadata
  The MetadataWidget for NamedClses.
RDFSNamedClassMetadataWidget() - Constructor for class edu.stanford.smi.protegex.owl.ui.metadata.RDFSNamedClassMetadataWidget
RDFSNamedClassTreeNode - Class in edu.stanford.smi.protegex.owl.ui.explorer
RDFSNamedClassTreeNode(LazyTreeNode, RDFSNamedClass, ExplorerFilter) - Constructor for class edu.stanford.smi.protegex.owl.ui.explorer.RDFSNamedClassTreeNode
RDFSNames - Interface in edu.stanford.smi.protegex.owl.model
  Defines the names of the RDFS related parts of the OWL system ontology.
RDFSNames.Cls - Interface in edu.stanford.smi.protegex.owl.model
RDFSNames.ClsID - Interface in edu.stanford.smi.protegex.owl.model
RDFSNames.Slot - Interface in edu.stanford.smi.protegex.owl.model
RDFSSubClassOfComponent - Class in edu.stanford.smi.protegex.owl.ui.components.superclasses
  A MultiResourceComponent for editing values of the rdfs:subClassOf property.
RDFSSubClassOfComponent(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.ui.components.superclasses.RDFSSubClassOfComponent
RDFSSubClassOfComponent(OWLModel, boolean) - Constructor for class edu.stanford.smi.protegex.owl.ui.components.superclasses.RDFSSubClassOfComponent
RDFSSubClassOfWidget - Class in edu.stanford.smi.protegex.owl.ui.widget
RDFSSubClassOfWidget() - Constructor for class edu.stanford.smi.protegex.owl.ui.widget.RDFSSubClassOfWidget
RDFSSubClassOfWidgetMetadata - Class in edu.stanford.smi.protegex.owl.ui.widget
RDFSSubClassOfWidgetMetadata() - Constructor for class edu.stanford.smi.protegex.owl.ui.widget.RDFSSubClassOfWidgetMetadata
RDFUntypedResource - Interface in edu.stanford.smi.protegex.owl.model
  An rdf:Resource without any rdf:type.
RDFXMLContentWriter - Interface in edu.stanford.smi.protegex.owl.writer.rdfxml.rdfwriter
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Apr 7, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
RDFXMLDocumentWriter - Class in edu.stanford.smi.protegex.owl.writer.rdfxml.rdfwriter
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Apr 7, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
RDFXMLDocumentWriter(XMLWriter, Collection) - Constructor for class edu.stanford.smi.protegex.owl.writer.rdfxml.rdfwriter.RDFXMLDocumentWriter
RDFXMLWriter - Class in edu.stanford.smi.protegex.owl.writer.rdfxml.rdfwriter
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Oct 10, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
RDFXMLWriter() - Constructor for class edu.stanford.smi.protegex.owl.writer.rdfxml.rdfwriter.RDFXMLWriter
reactToKnowledgeBaseChange() - Method in class edu.stanford.smi.protegex.owl.inference.reasoner.AbstractProtegeReasoner
READ_ONLY - Static variable in class edu.stanford.smi.protegex.owl.model.ProtegeNames
ReadByte() - Method in class edu.stanford.smi.protegex.owl.model.classparser.compact.JavaCharStream
ReadByte() - Method in class edu.stanford.smi.protegex.owl.model.classparser.dl.JavaCharStream
ReadByte() - Method in class edu.stanford.smi.protegex.owl.model.classparser.manchester.JavaCharStream
readChar() - Method in class edu.stanford.smi.protegex.owl.model.classparser.compact.JavaCharStream
readChar() - Method in class edu.stanford.smi.protegex.owl.model.classparser.dl.JavaCharStream
readChar() - Method in class edu.stanford.smi.protegex.owl.model.classparser.manchester.JavaCharStream
readOWLOntologyFromDatabase(OWLModel, TripleStore) - Static method in class edu.stanford.smi.protegex.owl.database.DatabaseFactoryUtils
REAL_MULTIPLIER - Static variable in class edu.stanford.smi.protegex.owl.inference.dig.translator.DIGDataTypes
REASONER_INSPECTOR - Static variable in class edu.stanford.smi.protegex.owl.inference.ui.icons.InferenceIcons
REASONER_URL_KEY - Static variable in class edu.stanford.smi.protegex.owl.inference.util.ReasonerPreferences
ReasonerActionRunner - Class in edu.stanford.smi.protegex.owl.inference.ui
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Aug 23, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm

  The ReasonerActionRunner can be used to execute a number of reasoner actions in a separate worker thread.
ReasonerActionRunner(RunnableReasonerAction, boolean) - Constructor for class edu.stanford.smi.protegex.owl.inference.ui.ReasonerActionRunner
  Constructs a ReasonerActionRunner.
ReasonerErrorExceptionLogRecord - Class in edu.stanford.smi.protegex.owl.inference.protegeowl.log
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Aug 26, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
ReasonerErrorExceptionLogRecord(ProtegeReasonerException, ReasonerLogRecord) - Constructor for class edu.stanford.smi.protegex.owl.inference.protegeowl.log.ReasonerErrorExceptionLogRecord
ReasonerIdentity - Interface in edu.stanford.smi.protegex.owl.inference.dig.reasoner
ReasonerInspectorPanel - Class in edu.stanford.smi.protegex.owl.inference.ui.inspector
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Sep 15, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
ReasonerInspectorPanel(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.inference.ui.inspector.ReasonerInspectorPanel
ReasonerLogger - Class in edu.stanford.smi.protegex.owl.inference.protegeowl.log
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Aug 24, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
ReasonerLogger() - Constructor for class edu.stanford.smi.protegex.owl.inference.protegeowl.log.ReasonerLogger
ReasonerLoggerListener - Interface in edu.stanford.smi.protegex.owl.inference.protegeowl.log
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Aug 24, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
ReasonerLoggerUtil - Class in edu.stanford.smi.protegex.owl.inference.protegeowl.log
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Sep 21, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
ReasonerLoggerUtil() - Constructor for class edu.stanford.smi.protegex.owl.inference.protegeowl.log.ReasonerLoggerUtil
ReasonerLogRecord - Class in edu.stanford.smi.protegex.owl.inference.protegeowl.log
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Aug 23, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
ReasonerLogRecord(ReasonerLogRecord) - Constructor for class edu.stanford.smi.protegex.owl.inference.protegeowl.log.ReasonerLogRecord
ReasonerLogRecordFactory - Class in edu.stanford.smi.protegex.owl.inference.protegeowl.log
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Aug 23, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
ReasonerLogRecordFactory() - Constructor for class edu.stanford.smi.protegex.owl.inference.protegeowl.log.ReasonerLogRecordFactory
ReasonerLogRecordRenderer - Class in edu.stanford.smi.protegex.owl.inference.protegeowl.log
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Aug 22, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
ReasonerLogRecordRenderer() - Constructor for class edu.stanford.smi.protegex.owl.inference.protegeowl.log.ReasonerLogRecordRenderer
ReasonerManager - Class in edu.stanford.smi.protegex.owl.inference.protegeowl
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Jun 22, 2004
ReasonerPluginManager - Class in edu.stanford.smi.protegex.owl.inference.protegeowl
ReasonerPluginManager() - Constructor for class edu.stanford.smi.protegex.owl.inference.protegeowl.ReasonerPluginManager
ReasonerPluginMenuManager - Class in edu.stanford.smi.protegex.owl.inference.protegeowl
ReasonerPluginMenuManager() - Constructor for class edu.stanford.smi.protegex.owl.inference.protegeowl.ReasonerPluginMenuManager
ReasonerPreferences - Class in edu.stanford.smi.protegex.owl.inference.util
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Aug 30, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
ReasonerPreferences() - Constructor for class edu.stanford.smi.protegex.owl.inference.util.ReasonerPreferences
ReasonerProgressModalDialog - Class in edu.stanford.smi.protegex.owl.inference.ui
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Jul 21, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
ReasonerProgressModalDialog(Frame, String) - Constructor for class edu.stanford.smi.protegex.owl.inference.ui.ReasonerProgressModalDialog
ReasonerTask - Interface in edu.stanford.smi.protegex.owl.inference.protegeowl.task
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Jul 22, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm

  Reasoner tasks are encapsulated to allow them to be started in worker threads and monitored.
ReasonerTaskAdapter - Class in edu.stanford.smi.protegex.owl.inference.protegeowl.task
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Aug 20, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
ReasonerTaskAdapter() - Constructor for class edu.stanford.smi.protegex.owl.inference.protegeowl.task.ReasonerTaskAdapter
ReasonerTaskEvent - Class in edu.stanford.smi.protegex.owl.inference.protegeowl.task
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Aug 13, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
ReasonerTaskEvent(ReasonerTask) - Constructor for class edu.stanford.smi.protegex.owl.inference.protegeowl.task.ReasonerTaskEvent
ReasonerTaskListener - Interface in edu.stanford.smi.protegex.owl.inference.protegeowl.task
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Aug 13, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
reasonerTaskListener - Variable in class edu.stanford.smi.protegex.owl.inference.reasoner.AbstractProtegeReasoner
ReasonerUtil - Class in edu.stanford.smi.protegex.owl.inference.util
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Jul 20, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
ReasonerUtil() - Constructor for class edu.stanford.smi.protegex.owl.inference.util.ReasonerUtil
ReasonerWarningPanel - Class in edu.stanford.smi.protegex.owl.inference.ui
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Sep 21, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
ReasonerWarningPanel(OWLModel, Collection) - Constructor for class edu.stanford.smi.protegex.owl.inference.ui.ReasonerWarningPanel
  Constructs a ReasonerWarningPanel
REASONING_MENU - Static variable in class edu.stanford.smi.protegex.owl.ui.actions.AbstractOWLModelAction
rebind() - Method in class edu.stanford.smi.protegex.owl.inference.reasoner.AbstractProtegeReasoner
rebind() - Method in interface edu.stanford.smi.protegex.owl.inference.reasoner.ProtegeReasoner
  Resynchronizes the reasoner with the OWL model.
recentHasValueProperty - Static variable in class edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParser
recentHasValueProperty - Variable in exception edu.stanford.smi.protegex.owl.model.classparser.OWLClassParseException
recentTransferable - Variable in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTableTransferHandler
  Debugging only
reconfigure() - Method in class edu.stanford.smi.protegex.owl.swrl.ui.tab.SWRLTab
RECURSIVE_FLAG - Static variable in class edu.stanford.smi.protegex.owl.repository.impl.LocalFolderRepository
RefactorResourceAction - Class in edu.stanford.smi.protegex.owl.ui.refactoring
RefactorResourceAction(String, Icon) - Constructor for class edu.stanford.smi.protegex.owl.ui.refactoring.RefactorResourceAction
refill() - Method in class edu.stanford.smi.protegex.owl.ui.matrix.MatrixTableModel
refill() - Method in class edu.stanford.smi.protegex.owl.ui.owltable.AbstractOWLTableModel
refill() - Method in class edu.stanford.smi.protegex.owl.ui.properties.range.OWLDataRangeComponent
refill() - Method in class edu.stanford.smi.protegex.owl.ui.properties.range.UnionRangeClassesComponent
refill() - Method in class edu.stanford.smi.protegex.owl.ui.subsumption.ChangedClassesTableModel
refill(boolean) - Method in class edu.stanford.smi.protegex.owl.ui.subsumption.ChangedClassesTableModel
reformatText() - Method in class edu.stanford.smi.protegex.owl.swrl.ui.code.SWRLTextArea
reformatText(String) - Static method in class edu.stanford.smi.protegex.owl.swrl.ui.code.SWRLTextArea
refresh() - Method in class edu.stanford.smi.protegex.owl.repository.impl.AbstractLocalRepository
refresh() - Method in class edu.stanford.smi.protegex.owl.repository.impl.DatabaseRepository
refresh() - Method in class edu.stanford.smi.protegex.owl.repository.impl.DublinCoreDLVersionRedirectRepository
refresh() - Method in class edu.stanford.smi.protegex.owl.repository.impl.ForcedURLRetrievalRepository
refresh() - Method in class edu.stanford.smi.protegex.owl.repository.impl.FTPRepository
refresh() - Method in class edu.stanford.smi.protegex.owl.repository.impl.HTTPRepository
refresh() - Method in class edu.stanford.smi.protegex.owl.repository.impl.LocalFileRepository
refresh() - Method in class edu.stanford.smi.protegex.owl.repository.impl.LocalFolderRepository
refresh() - Method in interface edu.stanford.smi.protegex.owl.repository.Repository
  Causes the repository to contain the latest information.
refresh() - Method in class edu.stanford.smi.protegex.owl.ui.conditions.AbstractConditionsWidget
refresh() - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTableModel
REFRESH - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
refresh() - Method in class edu.stanford.smi.protegex.owl.ui.search.finder.FindResultsPanel
refresh(int) - Method in class edu.stanford.smi.protegex.owl.ui.search.finder.FindResultsPanel
  Should run the search and refresh in a seperate thread
refresh() - Method in class edu.stanford.smi.protegex.owl.ui.subsumption.ChangedClassesPanel
refreshChangedClses() - Method in class edu.stanford.smi.protegex.owl.ui.cls.OWLClassesTab
refreshReasonerIdentity() - Method in class edu.stanford.smi.protegex.owl.inference.ui.inspector.ReasonerInspectorPanel
register(ProjectView) - Static method in class edu.stanford.smi.protegex.owl.ui.ProtegeUI
registerAction(OWLTableAction) - Method in class edu.stanford.smi.protegex.owl.ui.owltable.SymbolTable
  Registers a OWLTableAction so that it will be enabled or disabled in the future.
registerAction(OWLTableAction, int) - Method in class edu.stanford.smi.protegex.owl.ui.owltable.SymbolTable
  Registers a OWLTableAction so that it will be enabled or disabled in the future.
registerActionSeparator() - Method in class edu.stanford.smi.protegex.owl.ui.owltable.SymbolTable
  Inserts a separator behind the previously added action.
registerPlugin(String, String, String, Icon, Icon, Icon, P3SWRLTabPluginCreator) - Static method in class edu.stanford.smi.protegex.owl.swrl.P3SWRLTabPluginManager
  This method is called by each plugin as it is loaded to inform the SWRLTab of its presence.
registerPlugin(String, String, Icon, Icon, Icon, P3SWRLTabPluginCreator) - Static method in class edu.stanford.smi.protegex.owl.swrl.P3SWRLTabPluginManager
  This method is called by each plugin as it is loaded to inform the SWRLTab of its presence.
registerRepositoryFactoryPlugin(RepositoryFactoryPlugin) - Method in class edu.stanford.smi.protegex.owl.repository.factory.RepositoryFactory
registerSwitchableType(SwitchableType) - Static method in class edu.stanford.smi.protegex.owl.ui.cls.SwitchableClassDefinitionWidget
ReInit(JavaCharStream) - Method in class edu.stanford.smi.protegex.owl.model.classparser.compact.CompactParserTokenManager
ReInit(JavaCharStream, int) - Method in class edu.stanford.smi.protegex.owl.model.classparser.compact.CompactParserTokenManager
ReInit(Reader, int, int, int) - Method in class edu.stanford.smi.protegex.owl.model.classparser.compact.JavaCharStream
ReInit(Reader, int, int) - Method in class edu.stanford.smi.protegex.owl.model.classparser.compact.JavaCharStream
ReInit(Reader) - Method in class edu.stanford.smi.protegex.owl.model.classparser.compact.JavaCharStream
ReInit(InputStream, String, int, int, int) - Method in class edu.stanford.smi.protegex.owl.model.classparser.compact.JavaCharStream
ReInit(InputStream, int, int, int) - Method in class edu.stanford.smi.protegex.owl.model.classparser.compact.JavaCharStream
ReInit(InputStream, String, int, int) - Method in class edu.stanford.smi.protegex.owl.model.classparser.compact.JavaCharStream
ReInit(InputStream, int, int) - Method in class edu.stanford.smi.protegex.owl.model.classparser.compact.JavaCharStream
ReInit(InputStream, String) - Method in class edu.stanford.smi.protegex.owl.model.classparser.compact.JavaCharStream
ReInit(InputStream) - Method in class edu.stanford.smi.protegex.owl.model.classparser.compact.JavaCharStream
ReInit(InputStream) - Method in class edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxParser
ReInit(InputStream, String) - Method in class edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxParser
ReInit(Reader) - Method in class edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxParser
ReInit(DLSyntaxParserTokenManager) - Method in class edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxParser
ReInit(JavaCharStream) - Method in class edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxParserTokenManager
ReInit(JavaCharStream, int) - Method in class edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxParserTokenManager
ReInit(Reader, int, int, int) - Method in class edu.stanford.smi.protegex.owl.model.classparser.dl.JavaCharStream
ReInit(Reader, int, int) - Method in class edu.stanford.smi.protegex.owl.model.classparser.dl.JavaCharStream
ReInit(Reader) - Method in class edu.stanford.smi.protegex.owl.model.classparser.dl.JavaCharStream
ReInit(InputStream, String, int, int, int) - Method in class edu.stanford.smi.protegex.owl.model.classparser.dl.JavaCharStream
ReInit(InputStream, int, int, int) - Method in class edu.stanford.smi.protegex.owl.model.classparser.dl.JavaCharStream
ReInit(InputStream, String, int, int) - Method in class edu.stanford.smi.protegex.owl.model.classparser.dl.JavaCharStream
ReInit(InputStream, int, int) - Method in class edu.stanford.smi.protegex.owl.model.classparser.dl.JavaCharStream
ReInit(InputStream, String) - Method in class edu.stanford.smi.protegex.owl.model.classparser.dl.JavaCharStream
ReInit(InputStream) - Method in class edu.stanford.smi.protegex.owl.model.classparser.dl.JavaCharStream
ReInit(Reader, int, int, int) - Method in class edu.stanford.smi.protegex.owl.model.classparser.manchester.JavaCharStream
ReInit(Reader, int, int) - Method in class edu.stanford.smi.protegex.owl.model.classparser.manchester.JavaCharStream
ReInit(Reader) - Method in class edu.stanford.smi.protegex.owl.model.classparser.manchester.JavaCharStream
ReInit(InputStream, String, int, int, int) - Method in class edu.stanford.smi.protegex.owl.model.classparser.manchester.JavaCharStream
ReInit(InputStream, int, int, int) - Method in class edu.stanford.smi.protegex.owl.model.classparser.manchester.JavaCharStream
ReInit(InputStream, String, int, int) - Method in class edu.stanford.smi.protegex.owl.model.classparser.manchester.JavaCharStream
ReInit(InputStream, int, int) - Method in class edu.stanford.smi.protegex.owl.model.classparser.manchester.JavaCharStream
ReInit(InputStream, String) - Method in class edu.stanford.smi.protegex.owl.model.classparser.manchester.JavaCharStream
ReInit(InputStream) - Method in class edu.stanford.smi.protegex.owl.model.classparser.manchester.JavaCharStream
ReInit(InputStream) - Method in class edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParser
ReInit(InputStream, String) - Method in class edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParser
ReInit(Reader) - Method in class edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParser
ReInit(ManchesterOWLParserTokenManager) - Method in class edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParser
ReInit(JavaCharStream) - Method in class edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParserTokenManager
ReInit(JavaCharStream, int) - Method in class edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParserTokenManager
reinit() - Method in class edu.stanford.smi.protegex.owl.ui.navigation.TabNavigationHistorySelectable
reinitAllPanel() - Method in class edu.stanford.smi.protegex.owl.ui.widget.MultiWidgetPropertyWidget
RELATED - Static variable in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGVocabulary.Tell
RELATED_INDIVIDUALS - Static variable in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGVocabulary.Ask
RelativeFileRepository - Class in edu.stanford.smi.protegex.owl.repository.impl
RelativeFileRepository(File, URL, String) - Constructor for class edu.stanford.smi.protegex.owl.repository.impl.RelativeFileRepository
RelativeFileRepository(File, String, boolean) - Constructor for class edu.stanford.smi.protegex.owl.repository.impl.RelativeFileRepository
RelativeFileRepositoryCreatorWizardPlugin - Class in edu.stanford.smi.protegex.owl.ui.repository.wizard.impl
RelativeFileRepositoryCreatorWizardPlugin() - Constructor for class edu.stanford.smi.protegex.owl.ui.repository.wizard.impl.RelativeFileRepositoryCreatorWizardPlugin
RelativeFileRepositoryFactoryPlugin - Class in edu.stanford.smi.protegex.owl.repository.impl
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Sep 22, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
RelativeFileRepositoryFactoryPlugin() - Constructor for class edu.stanford.smi.protegex.owl.repository.impl.RelativeFileRepositoryFactoryPlugin
RelativeFileURLSpecificationWizardPanel - Class in edu.stanford.smi.protegex.owl.ui.repository.wizard.impl
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Sep 28, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
RelativeFileURLSpecificationWizardPanel(WizardPage, OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.ui.repository.wizard.impl.RelativeFileURLSpecificationWizardPanel
RelativeFolderRepository - Class in edu.stanford.smi.protegex.owl.repository.impl
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Sep 26, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
RelativeFolderRepository(URL, String) - Constructor for class edu.stanford.smi.protegex.owl.repository.impl.RelativeFolderRepository
RelativeFolderRepository(URL, String, boolean) - Constructor for class edu.stanford.smi.protegex.owl.repository.impl.RelativeFolderRepository
RelativeFolderRepositoryCreatorWizardPlugin - Class in edu.stanford.smi.protegex.owl.ui.repository.wizard.impl
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Sep 28, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
RelativeFolderRepositoryCreatorWizardPlugin() - Constructor for class edu.stanford.smi.protegex.owl.ui.repository.wizard.impl.RelativeFolderRepositoryCreatorWizardPlugin
RelativeFolderRepositoryFactoryPlugin - Class in edu.stanford.smi.protegex.owl.repository.impl
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Sep 26, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
RelativeFolderRepositoryFactoryPlugin() - Constructor for class edu.stanford.smi.protegex.owl.repository.impl.RelativeFolderRepositoryFactoryPlugin
RelativeURLSpecificationWizardPanel - Class in edu.stanford.smi.protegex.owl.ui.repository.wizard.impl
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Sep 28, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
RelativeURLSpecificationWizardPanel(WizardPage, OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.ui.repository.wizard.impl.RelativeURLSpecificationWizardPanel
RELEASE_KNOWLEDGE_BASE - Static variable in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGVocabulary.Management
releaseKnowledgeBase(String) - Method in class edu.stanford.smi.protegex.owl.inference.dig.reasoner.DefaultDIGReasoner
  A helper method that releases a previously created knowledgebase.
releaseKnowledgeBase(String) - Method in interface edu.stanford.smi.protegex.owl.inference.dig.reasoner.DIGReasoner
  A helper method that releases a previously created knowledgebase.
reload() - Method in class edu.stanford.smi.protegex.owl.ui.existential.ExistentialTreeNode
reload() - Method in class edu.stanford.smi.protegex.owl.ui.individuals.AssertedInstancesListPanel
reload() - Method in class edu.stanford.smi.protegex.owl.ui.widget.OWLFormWidget
reloadUI(Project) - Static method in class edu.stanford.smi.protegex.owl.ui.ProtegeUI
reloadUI(ProjectView) - Static method in class edu.stanford.smi.protegex.owl.ui.ProtegeUI
reloadUI(OWLModel) - Static method in class edu.stanford.smi.protegex.owl.ui.ProtegeUI
reloadUI() - Method in class edu.stanford.smi.protegex.owl.ui.repository.AbstractRepositoriesPanel
rememberQueryText() - Method in class edu.stanford.smi.protegex.owl.ui.query.SPARQLQueryPanel
remove() - Method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DefaultDIGQueryResponseIterator
remove(String) - Method in class edu.stanford.smi.protegex.owl.model.project.DefaultSettingsMap
remove(String) - Method in interface edu.stanford.smi.protegex.owl.model.project.SettingsMap
remove(Triple) - Method in class edu.stanford.smi.protegex.owl.model.triplestore.impl.TripleStoreImpl
remove(RDFResource, RDFProperty, Object) - Method in class edu.stanford.smi.protegex.owl.model.triplestore.impl.TripleStoreImpl
remove(Triple) - Method in interface edu.stanford.smi.protegex.owl.model.triplestore.TripleStore
remove(RDFResource, RDFProperty, Object) - Method in interface edu.stanford.smi.protegex.owl.model.triplestore.TripleStore
remove(Repository) - Method in class edu.stanford.smi.protegex.owl.repository.RepositoryManager
REMOVE_OVERLAY - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
removeAllGlobalRepositories() - Method in class edu.stanford.smi.protegex.owl.repository.RepositoryManager
removeAllProjectRepositories() - Method in class edu.stanford.smi.protegex.owl.repository.RepositoryManager
removeAllValidClasses() - Method in class edu.stanford.smi.protegex.owl.ui.explorer.filter.DefaultExplorerFilter
removeBackwardCompatibleWith(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLOntology
removeBackwardCompatibleWith(String) - Method in interface edu.stanford.smi.protegex.owl.model.OWLOntology
removeChangeListener(ChangeListener) - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.OntologyURIPanel
removeClassListener(ClassListener) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
removeClassListener(ClassListener) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
removeClassListener(ClassListener) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Removes a ClassListener that was previously added.
removeClassListener(ClassListener) - Method in interface edu.stanford.smi.protegex.owl.model.RDFSClass
  Removes a ClassListener to receive events about this RDFSClass.
removeClsListener(ClsListener) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeCls
  Deprecated.
removeClsListener(Cls, ClsListener) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
removeClsListener(ClsListener) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
removeComment(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
removeComment(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFIndividual
removeComment(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
removeComment(RDFResource, String) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
removeComment(String) - Method in interface edu.stanford.smi.protegex.owl.model.RDFResource
  Removes an rdfs:comment from this resource.
removeDefaultAnnotationProperty(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.ui.components.annotations.DefaultAnnotations
removedFromUnionDomainOf(RDFSClass, RDFProperty, ClsEvent) - Method in class edu.stanford.smi.protegex.owl.model.event.ClassAdapter
removedFromUnionDomainOf(RDFSClass, RDFProperty) - Method in class edu.stanford.smi.protegex.owl.model.event.ClassAdapter
removedFromUnionDomainOf(RDFSClass, RDFProperty) - Method in interface edu.stanford.smi.protegex.owl.model.event.ClassListener
  Called after a class has been removed from the union domain of a property.
removeDifferentFrom(RDFResource) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
removeDifferentFrom(RDFResource) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFIndividual
removeDifferentFrom(RDFResource) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
removeDifferentFrom(RDFResource, RDFResource) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
removeDifferentFrom(RDFResource) - Method in interface edu.stanford.smi.protegex.owl.model.RDFResource
removeDirectSuperclass(Cls, Cls) - Method in class edu.stanford.smi.protegex.owl.model.framestore.FacetUpdateFrameStore
removeDirectSuperclass(Cls, Cls) - Method in class edu.stanford.smi.protegex.owl.model.framestore.OWLFrameStore
removeDirectSuperclass(Cls, Cls) - Method in class edu.stanford.smi.protegex.owl.model.framestore.OwlSubclassFrameStore
removeDirectSuperclass(Cls) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeCls
  Deprecated.
removeDirectSuperclass(Cls, Cls) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
removeDirectSuperClass(Cls, Cls) - Static method in class edu.stanford.smi.protegex.owl.ui.conditions.OWLClassUtil
  Remove a superclass from a class, without deleting the class This method was necessary because OWLFrameStore deletes all anonymous classes automatically when removing a superclass and this is not always desirable.
removeDirectSuperslot(Slot, Slot) - Method in class edu.stanford.smi.protegex.owl.model.framestore.RangeUpdateFrameStore
removeDirectSuperslot(Slot, Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
removeDirectSuperslot(Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeSlot
  Deprecated.
removeDirectTemplateSlot(Cls, Slot) - Method in class edu.stanford.smi.protegex.owl.model.framestore.DomainUpdateFrameStore
removeDirectTemplateSlot(Cls, Slot) - Method in class edu.stanford.smi.protegex.owl.model.framestore.OWLDeleteSimplificationFrameStore
removeDirectTemplateSlot(Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeCls
  Deprecated.
removeDirectTemplateSlot(Cls, Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
removeDirectType(Instance, Cls) - Method in class edu.stanford.smi.protegex.owl.model.framestore.TypeUpdateFrameStore
removeDirectType(Cls) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeInstance
  Deprecated.
removeDirectType(Instance, Cls) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
removeDisjointClass(RDFSClass) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLNamedClass
removeDisjointClass(RDFSClass) - Method in interface edu.stanford.smi.protegex.owl.model.OWLNamedClass
  Removes a disjoint class of this.
removeDistinctMember(RDFResource) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLAllDifferent
removeDistinctMember(RDFResource) - Method in interface edu.stanford.smi.protegex.owl.model.OWLAllDifferent
removeEmptyRow() - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.DisjointClassesTableModel
removeEmptyRow() - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTableModel
removeEmptyRow() - Method in class edu.stanford.smi.protegex.owl.ui.owltable.AbstractOWLTableModel
removeEmptyRow() - Method in interface edu.stanford.smi.protegex.owl.ui.owltable.OWLTableModel
removeEquivalentClass(RDFSClass) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLNamedClass
removeEquivalentClass(RDFSClass) - Method in interface edu.stanford.smi.protegex.owl.model.OWLNamedClass
  Removes an equivalent class.
removeEquivalentClass(RDFSClass, RDFSClass) - Static method in class edu.stanford.smi.protegex.owl.ui.conditions.OWLClassUtil
removeEquivalentProperty(OWLProperty) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
removeEquivalentProperty(OWLProperty) - Method in interface edu.stanford.smi.protegex.owl.model.RDFProperty
  Removes a property from the list of equivalent properties.
removeExistentialDependent(OWLNamedClass, OWLObjectProperty, OWLNamedClass) - Static method in class edu.stanford.smi.protegex.owl.ui.existential.Existential
  Deprecated.
removeFacetListener(FacetListener) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not needed
removeFacetListener(Facet, FacetListener) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not needed
removeFilteredElements(Set<RDFResource>, List<Class<? extends RDFResource>>) - Method in class edu.stanford.smi.protegex.owl.ui.code.OWLResourceNameMatcher
removeFrame(Cls) - Method in class edu.stanford.smi.protegex.owl.jena.parser.SuperClsCache
removeFrameListener(FrameListener) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeInstance
  Deprecated.
removeFrameListener(Frame, FrameListener) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not needed
removeFrameListener(FrameListener) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
removeFrameListner() - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.OWLMetadataTab
removeFrameStore(FrameStore) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. internal Protege detail
removeGciAxiom(RDFSClass) - Method in class edu.stanford.smi.protegex.owl.jena.parser.GlobalParserCache
removeIgnoreImport(String) - Method in class edu.stanford.smi.protegex.owl.jena.creator.JenaCreator
removeImports(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLOntology
removeImports(String) - Method in interface edu.stanford.smi.protegex.owl.model.OWLOntology
removeIncompatibleWith(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLOntology
removeIncompatibleWith(String) - Method in interface edu.stanford.smi.protegex.owl.model.OWLOntology
removeInferredSuperclass(RDFSClass) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLNamedClass
removeInferredSuperclass(RDFSClass) - Method in interface edu.stanford.smi.protegex.owl.model.OWLNamedClass
  Removes a computed superclass, as the result of a classification.
removeInstanceListener(InstanceListener) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeInstance
  Deprecated.
removeInstanceListener(Instance, InstanceListener) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
removeInstanceListener(InstanceListener) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
removeInstanceType(Instance, Cls) - Static method in class edu.stanford.smi.protegex.owl.jena.parser.FrameCreatorUtility
removeInvisibleResources(Iterator) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
removeIOAddress(String) - Method in class edu.stanford.smi.protegex.owl.model.triplestore.impl.TripleStoreImpl
removeIOAddress(String) - Method in interface edu.stanford.smi.protegex.owl.model.triplestore.TripleStore
removeIsDefinedBy(RDFResource) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
removeIsDefinedBy(RDFResource) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFIndividual
removeIsDefinedBy(RDFResource) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
removeIsDefinedBy(Instance, Instance) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
removeIsDefinedBy(RDFResource) - Method in interface edu.stanford.smi.protegex.owl.model.RDFResource
removeJavaLoadPackage(String) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not needed
removeKnowledgeBaseListener(KnowledgeBaseListener) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
removeLabel(String, String) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
removeLabel(String, String) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFIndividual
removeLabel(String, String) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
removeLabel(RDFResource, String, String) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
removeLabel(String, String) - Method in interface edu.stanford.smi.protegex.owl.model.RDFResource
  Removes a label that has been previously added.
removeListDataListener(ListDataListener) - Method in class edu.stanford.smi.protegex.owl.ui.search.finder.ResultsViewModelFind
removeListener(DIGLoggerListener) - Method in class edu.stanford.smi.protegex.owl.inference.dig.reasoner.logger.DIGLogger
removeListener(ReasonerLoggerListener) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.log.ReasonerLogger
removeListeners() - Method in class edu.stanford.smi.protegex.owl.inference.reasoner.AbstractProtegeReasoner
removeListValue(RDFResource, RDFProperty, Object) - Static method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFList
removeListValue(RDFResource, RDFProperty, RDFList, int) - Static method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFList
removeModelListener(ModelListener) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
removeModelListener(ModelListener) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Removes a ModelListener that was previously added.
removeNamespaceManagerListener(NamespaceManagerListener) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractNamespaceManager
removeNamespaceManagerListener(NamespaceManagerListener) - Method in class edu.stanford.smi.protegex.owl.model.impl.UnmodifiableNamespaceManager
removeNamespaceManagerListener(NamespaceManagerListener) - Method in interface edu.stanford.smi.protegex.owl.model.NamespaceManager
removeNotify() - Method in class edu.stanford.smi.protegex.owl.ui.clsproperties.PropertyRestrictionsTreeWidget
removeNsPrefix(String) - Method in class edu.stanford.smi.protegex.owl.jena.graph.ProtegePrefixMapping
removeOneOf(RDFResource) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLEnumeratedClass
removeOneOf(RDFResource) - Method in interface edu.stanford.smi.protegex.owl.model.OWLEnumeratedClass
  Removes a resource from this enumeration.
removeOperand(RDFSClass) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLNAryLogicalClass
removeOperand(RDFSClass) - Method in interface edu.stanford.smi.protegex.owl.model.OWLNAryLogicalClass
  Removes an operand that was previously added to this logical class.
removeOWLTest(OWLTest) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
removeOWLTest(OWLTest) - Method in interface edu.stanford.smi.protegex.owl.testing.OWLTestManager
removeOWLThingSuperclass(OWLModel, OWLClass) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
removeOWLThingSuperclass(OWLModel, URI) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
removeOwnSlotValue(Slot, Object) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeInstance
  Deprecated.
removeOwnSlotValue(Frame, Slot, Object) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
removePlugin(AnnotationsWidgetPlugin) - Static method in class edu.stanford.smi.protegex.owl.ui.components.triples.AbstractTriplesComponent
removePrefix(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.ImportingOwlNamespaceManager
removePrefix(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLNamespaceManager
removePrefix(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.UnmodifiableNamespaceManager
removePrefix(String) - Method in interface edu.stanford.smi.protegex.owl.model.NamespaceMap
removePrefix(String) - Method in class edu.stanford.smi.protegex.owl.model.triplestore.impl.TripleStoreImpl
removePrefixMappingSimple(String, String) - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLNamespaceManager
removePriorVersion(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLOntology
removePriorVersion(String) - Method in interface edu.stanford.smi.protegex.owl.model.OWLOntology
removePropertyChangeListener(PropertyChangeListener) - Method in class edu.stanford.smi.protegex.owl.ui.actions.AbstractOWLModelAction
removePropertyChangeListener(PropertyChangeListener) - Method in interface edu.stanford.smi.protegex.owl.ui.actions.OWLModelAction
removePropertyListener(PropertyListener) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
removePropertyListener(PropertyListener) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
removePropertyListener(PropertyListener) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Removes a PropertyListener that was previously added.
removePropertyListener(PropertyListener) - Method in interface edu.stanford.smi.protegex.owl.model.RDFProperty
  Removes a PropertyListener to receive events on changes in the property.
removePropertyValue(OntResource, Property, String) - Static method in class edu.stanford.smi.protegex.owl.jena.Jena
  A convenience method that removes a property value with a given toString serialization from an OntResource.
removePropertyValue(Resource, Property, RDFNode) - Static method in class edu.stanford.smi.protegex.owl.jena.Jena
removePropertyValue(RDFProperty, Object) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
removePropertyValue(RDFProperty, Object) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFIndividual
removePropertyValue(RDFProperty, Object) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
removePropertyValue(RDFResource, RDFProperty, Object) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
removePropertyValue(RDFProperty, Object) - Method in interface edu.stanford.smi.protegex.owl.model.RDFResource
removePropertyValueListener(PropertyValueListener) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
removePropertyValueListener(PropertyValueListener) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
removePropertyValueListener(PropertyValueListener) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFIndividual
removePropertyValueListener(PropertyValueListener) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
removePropertyValueListener(RDFResource, PropertyValueListener) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
removePropertyValueListener(PropertyValueListener) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Removes a PropertyValueListener previously added.
removePropertyValueListener(PropertyValueListener) - Method in interface edu.stanford.smi.protegex.owl.model.RDFResource
RemovePropertyWidgetFromFormAction - Class in edu.stanford.smi.protegex.owl.ui.resourcedisplay
  An Action to remove a property widget of a currently visible slot from the FormWidget of the direct type of a given resource.
RemovePropertyWidgetFromFormAction(RDFResource, ResourceDisplay) - Constructor for class edu.stanford.smi.protegex.owl.ui.resourcedisplay.RemovePropertyWidgetFromFormAction
removeProtegeType(RDFSClass) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
removeProtegeType(RDFSClass) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFIndividual
removeProtegeType(RDFSClass) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
removeProtegeType(RDFResource, RDFSClass) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
removeProtegeType(RDFSClass) - Method in interface edu.stanford.smi.protegex.owl.model.RDFResource
  Removes a type from this resource.
removePurchases(Purchase) - Method in interface edu.stanford.smi.protegex.owlx.examples.javaDemo.model.Customer_
removePurchases(Purchase) - Method in class edu.stanford.smi.protegex.owlx.examples.javaDemo.model.impl.DefaultCustomer_
removeRDFType(RDFSClass) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
removeRDFType(RDFSClass) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFIndividual
removeRDFType(RDFSClass) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
removeRDFType(RDFResource, RDFSClass) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
removeRDFType(RDFSClass) - Method in interface edu.stanford.smi.protegex.owl.model.RDFResource
  Removes an rdf:type from this resource.
RemoveRDFTypeAction - Class in edu.stanford.smi.protegex.owl.ui.actions
RemoveRDFTypeAction() - Constructor for class edu.stanford.smi.protegex.owl.ui.actions.RemoveRDFTypeAction
removeRedundantRDFLists(Model) - Static method in class edu.stanford.smi.protegex.owl.jena.protege2jena.Protege2Jena
  In several contexts, such as owl:unionOf operands, it is unusual to have typed rdf:Lists.
removeResourceListener(ResourceListener) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
removeResourceListener(ResourceListener) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
removeResourceListener(ResourceListener) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFIndividual
removeResourceListener(ResourceListener) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
removeResourceListener(RDFResource, ResourceListener) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
removeResourceListener(ResourceListener) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Removes a ResourceListener that was previously added.
removeResourceListener(ResourceListener) - Method in interface edu.stanford.smi.protegex.owl.model.RDFResource
removeRestrictions(Cls, Slot, Cls) - Method in class edu.stanford.smi.protegex.owl.model.framestore.updater.AbstractRestrictionUpdater
removeResultListener(SearchListener) - Method in class edu.stanford.smi.protegex.owl.ui.search.finder.BasicFind
removeResultListener(SearchListener) - Method in interface edu.stanford.smi.protegex.owl.ui.search.finder.Find
removeRow(int) - Method in class edu.stanford.smi.protegex.owl.ui.testing.OWLTestResultsTableModel
removeRuleGroup(String) - Method in class edu.stanford.smi.protegex.owl.swrl.model.impl.DefaultSWRLImp
  Remove a rule group name from a rule.
removeRuleGroup(String) - Method in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLImp
removeSameAs(RDFResource) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
removeSameAs(RDFResource) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFIndividual
removeSameAs(RDFResource) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
removeSameAs(Instance, Instance) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
removeSameAs(RDFResource) - Method in interface edu.stanford.smi.protegex.owl.model.RDFResource
removeSelection() - Method in class edu.stanford.smi.protegex.owl.ui.cls.OWLSubclassPane
removeSelection() - Method in class edu.stanford.smi.protegex.owl.ui.existential.ExistentialTreePanel
removeSelection() - Method in class edu.stanford.smi.protegex.owl.ui.explorer.ExplorerTreePanel
removeSelection() - Method in class edu.stanford.smi.protegex.owl.ui.properties.OWLSubpropertyPane
removeSelection() - Method in class edu.stanford.smi.protegex.owl.ui.subsumption.SubsumptionTreePanel
removeSelectionListener(SelectionListener) - Method in class edu.stanford.smi.protegex.owl.ui.navigation.TabNavigationHistorySelectable
removeSelectionListener(SelectionListener) - Method in class edu.stanford.smi.protegex.owl.ui.properties.OWLPropertyHierarchiesPanel
removeSelectionListener(SelectionListener) - Method in class edu.stanford.smi.protegex.owl.ui.resourcedisplay.ResourceDisplay
removeSlotListener(Slot, SlotListener) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
removeSlotListener(SlotListener) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
removeSlotListener(SlotListener) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeSlot
  Deprecated.
removeSubclassesDisjoint(OWLNamedClass) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
removeSuperclass(RDFSClass) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
removeSuperclass(RDFSClass) - Method in interface edu.stanford.smi.protegex.owl.model.RDFSClass
  Removes a given class from the superclasses of this.
removeSuperClass(Cls, Cls) - Static method in class edu.stanford.smi.protegex.owl.ui.conditions.OWLClassUtil
removeSuperproperty(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
removeSuperproperty(RDFProperty) - Method in interface edu.stanford.smi.protegex.owl.model.RDFProperty
  Removes a superproperty.
removeTaskListener(ReasonerTaskListener) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.AbstractReasonerTask
  Removes a previously added listener.
removeTaskListener(ReasonerTaskListener) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.AbstractReasonerTask
  Removes a previously added listener.
removeTaskListener(ReasonerTaskListener) - Method in interface edu.stanford.smi.protegex.owl.inference.protegeowl.task.ReasonerTask
  Removes a previously added task listener.
removeTemplateFacetOverrides(Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeCls
  Deprecated. no OWL equivalent
removeTemplateFacetOverrides(Cls, Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not supported in OWL
removeTreeModelListener(TreeModelListener) - Method in class edu.stanford.smi.protegex.owl.ui.existential.ExistentialTreeModel
removeType(OWLIndividual, OWLClass) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
removeUndefTriple(String, UndefTriple) - Method in class edu.stanford.smi.protegex.owl.jena.parser.GlobalParserCache
removeUndefTripleKey(String) - Method in class edu.stanford.smi.protegex.owl.jena.parser.GlobalParserCache
removeUnionDomainClass(RDFSClass) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
removeUnionDomainClass(RDFSClass) - Method in interface edu.stanford.smi.protegex.owl.model.RDFProperty
  Removes a domain class, with union semantics.
removeUnionRangeClass(RDFSClass) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLObjectProperty
removeUnionRangeClass(RDFSClass) - Method in interface edu.stanford.smi.protegex.owl.model.OWLObjectProperty
removeValidClass(Class) - Method in class edu.stanford.smi.protegex.owl.ui.explorer.filter.DefaultExplorerFilter
removeVersionInfo(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
removeVersionInfo(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFIndividual
removeVersionInfo(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
removeVersionInfo(Instance, String) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
removeVersionInfo(String) - Method in interface edu.stanford.smi.protegex.owl.model.RDFResource
RenamableComponent - Interface in edu.stanford.smi.protegex.owl.ui.search
rename(String) - Method in interface edu.stanford.smi.protegex.owl.ui.search.RenamableComponent
RenameAcrossFilesAction - Class in edu.stanford.smi.protegex.owl.ui.refactoring
  An Action that can be used to rename a Resource across multiple files.
RenameAcrossFilesAction() - Constructor for class edu.stanford.smi.protegex.owl.ui.refactoring.RenameAcrossFilesAction
RenameAcrossFilesPanel - Class in edu.stanford.smi.protegex.owl.ui.refactoring
RenameAcrossFilesPanel(RDFResource, String[]) - Constructor for class edu.stanford.smi.protegex.owl.ui.refactoring.RenameAcrossFilesPanel
renameOntology(OWLModel, OWLOntology, String) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
  Renames an ontology.
renameResource(Resource, String, Model) - Static method in class edu.stanford.smi.protegex.owl.jena.Jena
  Deprecated. this has a bug (it does not rename the resource in all models) - use the other renameResource method instead
renameResource(OntModel, Resource, String) - Static method in class edu.stanford.smi.protegex.owl.jena.Jena
renameResourceInGraph(Graph, Resource, Resource) - Static method in class edu.stanford.smi.protegex.owl.jena.Jena
renameResourceInModel(Model, Resource, Resource) - Static method in class edu.stanford.smi.protegex.owl.jena.Jena
  Deprecated. wrong
render(OWLModel, Document, Node) - Method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DefaultDIGRenderer
render(OWLNamedClass, Document, Node) - Method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DefaultDIGRenderer
render(OWLSomeValuesFrom, Document, Node) - Method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DefaultDIGRenderer
render(OWLAllValuesFrom, Document, Node) - Method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DefaultDIGRenderer
render(OWLQuantifierRestriction, Document, Node) - Method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DefaultDIGRenderer
render(OWLHasValue, Document, Node) - Method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DefaultDIGRenderer
render(OWLMinCardinality, Document, Node) - Method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DefaultDIGRenderer
render(OWLMaxCardinality, Document, Node) - Method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DefaultDIGRenderer
render(OWLCardinality, Document, Node) - Method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DefaultDIGRenderer
render(OWLCardinalityBase, Document, Node, String) - Method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DefaultDIGRenderer
render(OWLUnionClass, Document, Node) - Method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DefaultDIGRenderer
render(OWLComplementClass, Document, Node) - Method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DefaultDIGRenderer
render(OWLIntersectionClass, Document, Node) - Method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DefaultDIGRenderer
render(OWLLogicalClass, Document, Node, String) - Method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DefaultDIGRenderer
render(OWLEnumeratedClass, Document, Node) - Method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DefaultDIGRenderer
render(OWLObjectProperty, Document, Node) - Method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DefaultDIGRenderer
render(OWLDatatypeProperty, Document, Node) - Method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DefaultDIGRenderer
render(RDFIndividual, Document, Node) - Method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DefaultDIGRenderer
render(OWLModel, Document, Node) - Method in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGRenderer
render(OWLNamedClass, Document, Node) - Method in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGRenderer
render(OWLSomeValuesFrom, Document, Node) - Method in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGRenderer
render(OWLAllValuesFrom, Document, Node) - Method in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGRenderer
render(OWLHasValue, Document, Node) - Method in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGRenderer
render(OWLMinCardinality, Document, Node) - Method in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGRenderer
render(OWLMaxCardinality, Document, Node) - Method in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGRenderer
render(OWLCardinality, Document, Node) - Method in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGRenderer
render(OWLUnionClass, Document, Node) - Method in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGRenderer
render(OWLComplementClass, Document, Node) - Method in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGRenderer
render(OWLIntersectionClass, Document, Node) - Method in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGRenderer
render(OWLEnumeratedClass, Document, Node) - Method in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGRenderer
render(OWLObjectProperty, Document, Node) - Method in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGRenderer
render(OWLDatatypeProperty, Document, Node) - Method in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGRenderer
render(RDFIndividual, Document, Node) - Method in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGRenderer
renderAppropriateCls(RDFSClass, Document, Node) - Method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DefaultDIGRenderer
renderAppropriateSlot(Slot, Document, Node) - Method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DefaultDIGRenderer
renderAxioms(OWLNamedClass, Document, Node) - Method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DefaultDIGRenderer
renderAxioms(OWLProperty, Document, Node) - Method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DefaultDIGRenderer
renderAxioms(RDFIndividual, Document, Node) - Method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DefaultDIGRenderer
renderAxioms(OWLNamedClass, Document, Node) - Method in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGRenderer
renderAxioms(OWLProperty, Document, Node) - Method in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGRenderer
renderAxioms(RDFIndividual, Document, Node) - Method in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGRenderer
renderClasses(OWLModel, Document, Node) - Method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DefaultDIGRenderer
  Renders the classes and their axioms
renderEquivalentSlots(OWLProperty, Document, Node) - Method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DefaultDIGRenderer
renderFakedDifferentFrom(Collection, Document, Node) - Method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DefaultDIGRenderer
renderFunctionalSlot(OWLProperty, Document, Node) - Method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DefaultDIGRenderer
renderIndividuals(OWLModel, Document, Node) - Method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DefaultDIGRenderer
RENDERING_PANEL_TITLE - Static variable in class edu.stanford.smi.protegex.owl.ui.menu.preferences.RenderingPanel
RenderingPanel - Class in edu.stanford.smi.protegex.owl.ui.menu.preferences
RenderingPanel(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.ui.menu.preferences.RenderingPanel
renderInverseFunctionalSlot(OWLProperty, Document, Node) - Method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DefaultDIGRenderer
renderInverseSlot(OWLProperty, Document, Node) - Method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DefaultDIGRenderer
renderProperties(OWLModel, Document, Node) - Method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DefaultDIGRenderer
  Renders the properties and their axioms
renderQuantifierDataRestriction(OWLQuantifierRestriction, Document, Node) - Method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DefaultDIGRenderer
renderQuantifierObjectRestriction(OWLQuantifierRestriction, Document, Node) - Method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DefaultDIGRenderer
renderSlotDomain(OWLProperty, Document, Node) - Method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DefaultDIGRenderer
renderSlotRange(OWLProperty, Document, Node) - Method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DefaultDIGRenderer
renderSuperSlots(OWLProperty, Document, Node) - Method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DefaultDIGRenderer
renderSymmetricSlot(OWLProperty, Document, Node) - Method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DefaultDIGRenderer
renderTransitiveSlot(OWLProperty, Document, Node) - Method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DefaultDIGRenderer
renderTypes(RDFIndividual, Document, Node) - Method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DefaultDIGRenderer
renderTypes(RDFResource, TripleStore, RDFResource, XMLWriter) - Static method in class edu.stanford.smi.protegex.owl.writer.rdfxml.util.Util
  Renders the types for a resource as rdf:type triples.
repair(OWLTestResult) - Method in class edu.stanford.smi.protegex.owl.testing.constraints.SPARQLAssertTest
repair(OWLTestResult) - Method in class edu.stanford.smi.protegex.owl.testing.owldl.TransitivePropertiesCannotBeFunctionalOWLDLTest
repair(OWLTestResult) - Method in interface edu.stanford.smi.protegex.owl.testing.RepairableOWLTest
  Attempts to repair the cause of a given OWLTestResult.
repair(OWLTestResult) - Method in class edu.stanford.smi.protegex.owl.testing.sanity.InverseOfFunctionalMustBeInverseFunctionalTest
repair(OWLTestResult) - Method in class edu.stanford.smi.protegex.owl.testing.sanity.InverseOfInverseFunctionalMustBeFunctionalTest
repair(OWLTestResult) - Method in class edu.stanford.smi.protegex.owl.testing.sanity.InverseOfSubpropertyMustBeSubpropertyOfInverseOfSuperpropertyTest
repair(OWLProperty) - Static method in class edu.stanford.smi.protegex.owl.testing.sanity.InverseOfSubpropertyMustBeSubpropertyOfInverseOfSuperpropertyTest
repair(OWLTestResult) - Method in class edu.stanford.smi.protegex.owl.testing.sanity.InverseOfSymmetricPropertyMustBeSymmetricPropertyTest
repair(OWLTestResult) - Method in class edu.stanford.smi.protegex.owl.testing.sanity.InverseOfTopLevelPropertyMustBeTopLevelPropertyTest
repair(OWLProperty) - Static method in class edu.stanford.smi.protegex.owl.testing.sanity.InverseOfTopLevelPropertyMustBeTopLevelPropertyTest
repair(OWLTestResult) - Method in class edu.stanford.smi.protegex.owl.testing.sanity.InverseOfTransitivePropertyMustBeTransitivePropertyTest
repair(OWLTestResult) - Method in class edu.stanford.smi.protegex.owl.testing.sanity.InversePropertyMustHaveMatchingRangeAndDomainTest
repair(OWLTestResult) - Method in class edu.stanford.smi.protegex.owl.testing.sanity.PropertyDomainRedundancyTest
repair(OWLTestResult) - Method in class edu.stanford.smi.protegex.owl.testing.sanity.PropertyRangeRedundancyTest
repair(OWLTestResult) - Method in class edu.stanford.smi.protegex.owl.testing.sanity.SymmetricPropertyMustHaveEqualRangeAndDomainTest
repair(OWLTestResult) - Method in class edu.stanford.smi.protegex.owl.testing.style.MinCardiZeroTest
repair(OWLTestResult) - Method in class edu.stanford.smi.protegex.owl.testing.style.PrimitiveSubclassesDisjointTest
repair(OWLTestResult) - Method in class edu.stanford.smi.protegex.owl.testing.style.SubclassesRestrictionDuplicatesThatOfSuperTest
RepairableOWLTest - Interface in edu.stanford.smi.protegex.owl.testing
  An OWLTest that can be repaired (semi-) automatically.
repairDomainIntoRange(OWLProperty) - Static method in class edu.stanford.smi.protegex.owl.testing.sanity.SymmetricPropertyMustHaveEqualRangeAndDomainTest
repairRangeIntoDomain(OWLProperty) - Static method in class edu.stanford.smi.protegex.owl.testing.sanity.SymmetricPropertyMustHaveEqualRangeAndDomainTest
repairRDFPropertyTests(RDFProperty) - Static method in class edu.stanford.smi.protegex.owl.testing.OWLTestLibrary
  Repairs all OWLSlotTests that are marked as AutoRepairableOWLTest on a given OWLProperty.
REPLACE - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLConstants.BuiltIns
  Deprecated.
REPLACE - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.CoreBuiltIns
replaceImp(SWRLImp, SWRLImp) - Method in class edu.stanford.smi.protegex.owl.swrl.ui.table.SWRLTable
replaceImps(OWLModel) - Method in class edu.stanford.smi.protegex.owl.swrl.model.SWRLFactory
replaceJavaObject(RDFResource) - Method in class edu.stanford.smi.protegex.owl.model.triplestore.impl.TripleStoreModelImpl
replaceJavaObject(RDFResource) - Method in interface edu.stanford.smi.protegex.owl.model.triplestore.TripleStoreModel
replaceJavaObject(RDFResource) - Method in class edu.stanford.smi.protegex.owl.server.triplestore.ClientTripleStoreModel
replaceOperand(OWLIntersectionClass, RDFSClass, RDFSClass) - Static method in class edu.stanford.smi.protegex.owl.ui.conditions.OWLClassUtil
  This method replaces an operand in an intersection class (without deleting the old operand) It searches for the place in the opernad list where the old operand was, and removes it (but does not delete it) and inserts in place the new operand
replaceSelectedWidget(String) - Method in class edu.stanford.smi.protegex.owl.ui.widget.OWLFormWidget
replaceTriple(Triple, Triple) - Static method in class edu.stanford.smi.protegex.owl.model.triplestore.TripleStoreUtil
replacetText(RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.code.ExpansionKeyListener
Repository - Interface in edu.stanford.smi.protegex.owl.repository
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Sep 12, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
REPOSITORY_DESCRIPTOR_PREFIX - Static variable in class edu.stanford.smi.protegex.owl.repository.impl.DatabaseRepository
REPOSITORY_EXTENTION - Static variable in class edu.stanford.smi.protegex.owl.repository.util.RepositoryFileManager
REPOSITORY_GROUP - Static variable in interface edu.stanford.smi.protegex.owl.ui.actions.OWLModelActionConstants
RepositoryAction - Interface in edu.stanford.smi.protegex.owl.ui.repository.action
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Oct 3, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
RepositoryActionManager - Class in edu.stanford.smi.protegex.owl.ui.repository.action
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Oct 3, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
RepositoryCreatorWizardPanel - Class in edu.stanford.smi.protegex.owl.ui.repository.wizard
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Sep 26, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
RepositoryCreatorWizardPanel() - Constructor for class edu.stanford.smi.protegex.owl.ui.repository.wizard.RepositoryCreatorWizardPanel
RepositoryCreatorWizardPlugin - Interface in edu.stanford.smi.protegex.owl.ui.repository.wizard
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Sep 26, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
RepositoryEntryLabel - Class in edu.stanford.smi.protegex.owl.ui.repository
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Sep 19, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
RepositoryEntryLabel(OWLModel, URI, String, boolean) - Constructor for class edu.stanford.smi.protegex.owl.ui.repository.RepositoryEntryLabel
RepositoryFactory - Class in edu.stanford.smi.protegex.owl.repository.factory
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Sep 19, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
RepositoryFactoryPlugin - Interface in edu.stanford.smi.protegex.owl.repository.factory
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Sep 19, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
RepositoryFileManager - Class in edu.stanford.smi.protegex.owl.repository.util
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Sep 24, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
RepositoryFileManager(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.repository.util.RepositoryFileManager
RepositoryImportEntry - Class in edu.stanford.smi.protegex.owl.ui.metadatatab.imports.wizard
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Dec 7, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
RepositoryImportEntry(URI, Repository) - Constructor for class edu.stanford.smi.protegex.owl.ui.metadatatab.imports.wizard.RepositoryImportEntry
RepositoryImportPage - Class in edu.stanford.smi.protegex.owl.ui.metadatatab.imports.wizard
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Oct 1, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
RepositoryImportPage(ImportWizard) - Constructor for class edu.stanford.smi.protegex.owl.ui.metadatatab.imports.wizard.RepositoryImportPage
RepositoryManager - Class in edu.stanford.smi.protegex.owl.repository
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Sep 18, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
RepositoryManager(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.repository.RepositoryManager
RepositoryManagerPanel - Class in edu.stanford.smi.protegex.owl.ui.repository
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Sep 27, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
RepositoryManagerPanel(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.ui.repository.RepositoryManagerPanel
RepositoryPanel - Class in edu.stanford.smi.protegex.owl.ui.repository
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Sep 18, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm

  A panel that displays the contents of an ontology repository.
RepositoryPanel(OWLModel, RepositoryManager, Repository, AbstractRepositoriesPanel) - Constructor for class edu.stanford.smi.protegex.owl.ui.repository.RepositoryPanel
RepositoryUtil - Class in edu.stanford.smi.protegex.owl.repository.util
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Sep 22, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
RepositoryUtil() - Constructor for class edu.stanford.smi.protegex.owl.repository.util.RepositoryUtil
RepositoryWizard - Class in edu.stanford.smi.protegex.owl.ui.repository.wizard
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Sep 26, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
RepositoryWizard(JComponent, OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.ui.repository.wizard.RepositoryWizard
requestDispose(JComponent) - Method in class edu.stanford.smi.protegex.owl.ui.search.finder.RetainFindResultsPanel
requestFocus() - Method in class edu.stanford.smi.protegex.owl.ui.search.finder.FindResultsListView
requestFocus() - Method in class edu.stanford.smi.protegex.owl.ui.search.finder.FindResultsPanel
requestFocus() - Method in class edu.stanford.smi.protegex.owl.ui.search.finder.FindResultsTableView
reset() - Method in class edu.stanford.smi.protegex.owl.inference.dig.DefaultProtegeDIGReasoner
reset() - Method in interface edu.stanford.smi.protegex.owl.inference.reasoner.ProtegeReasoner
  Detaches the OWL model from this reasoner, clears internal caches, and releases the resources allocated by this reasoner for the previously attached OWL model.
reset() - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.dl.DLSymbolGenerator
reset() - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.dl.DLSyntaxBrowserTextGenerator
reset() - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.manchester.SuggestionPopup
reset() - Method in class edu.stanford.smi.protegex.owl.ui.existential.ExistentialFillerProvider
reset() - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.imports.wizard.ImportWizard
reset() - Method in class edu.stanford.smi.protegex.owl.ui.search.finder.BasicFind
reset() - Method in interface edu.stanford.smi.protegex.owl.ui.search.finder.Find
resetComputedSuperclasses(OWLModel) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
resetComputedSuperclasses(OWLModel, Collection) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
resetEditedValue() - Method in class edu.stanford.smi.protegex.owl.ui.metadata.AnnotationTextAreaWidget
ResetInferredHierarchyTask - Class in edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Aug 19, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
ResetInferredHierarchyTask(ProtegeOWLReasoner) - Constructor for class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.ResetInferredHierarchyTask
ResetInferredHierarchyTask - Class in edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Aug 19, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
ResetInferredHierarchyTask(ProtegeReasoner) - Constructor for class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.ResetInferredHierarchyTask
resetJenaModel() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
resetJenaModel() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  resets the Jena model so that it can be rebuilt.
resetOntologyCache() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
resetOntologyCache() - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
resetUniqueSessionId() - Static method in class edu.stanford.smi.protegex.owl.jena.parser.ParserUtil
RESOLVE_URI - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLConstants.BuiltIns
  Deprecated.
RESOURCE - Static variable in interface edu.stanford.smi.protegex.owl.model.RDFNames.Slot
RESOURCE_NAME - Static variable in class edu.stanford.smi.protegex.owl.ui.search.finder.FindResult
RESOURCE_URI - Static variable in interface edu.stanford.smi.protegex.owl.model.OWLNames.Slot
ResourceAction - Class in edu.stanford.smi.protegex.owl.ui.actions
ResourceAction(String, Icon) - Constructor for class edu.stanford.smi.protegex.owl.ui.actions.ResourceAction
ResourceAction(String, Icon, String) - Constructor for class edu.stanford.smi.protegex.owl.ui.actions.ResourceAction
ResourceAction(String, Icon, String, boolean) - Constructor for class edu.stanford.smi.protegex.owl.ui.actions.ResourceAction
  Constructs a new ResourceAction.
ResourceActionManager - Class in edu.stanford.smi.protegex.owl.ui.actions
ResourceActionManager() - Constructor for class edu.stanford.smi.protegex.owl.ui.actions.ResourceActionManager
resourceAdapter - Variable in class edu.stanford.smi.protegex.owl.inference.reasoner.AbstractProtegeReasoner
ResourceAdapter - Class in edu.stanford.smi.protegex.owl.model.event
ResourceAdapter() - Constructor for class edu.stanford.smi.protegex.owl.model.event.ResourceAdapter
ResourceComparator - Class in edu.stanford.smi.protegex.owl.ui
  A Comparator that compares two RDFResources by their name.
ResourceComparator() - Constructor for class edu.stanford.smi.protegex.owl.ui.ResourceComparator
ResourceCopier - Class in edu.stanford.smi.protegex.owl.model.util
  A utility visitor class to copy resources by their slot values.
ResourceCopier() - Constructor for class edu.stanford.smi.protegex.owl.model.util.ResourceCopier
ResourceDisplay - Class in edu.stanford.smi.protegex.owl.ui.resourcedisplay
  An InstanceDisplay with the "type" actions instead of the yellow sticky ones on top.
ResourceDisplay(Project, boolean, boolean) - Constructor for class edu.stanford.smi.protegex.owl.ui.resourcedisplay.ResourceDisplay
ResourceDisplay(Project) - Constructor for class edu.stanford.smi.protegex.owl.ui.resourcedisplay.ResourceDisplay
ResourceDisplay(Project, int) - Constructor for class edu.stanford.smi.protegex.owl.ui.resourcedisplay.ResourceDisplay
ResourceDisplayPlugin - Interface in edu.stanford.smi.protegex.owl.ui.resourcedisplay
  The base interface of plugins that can add components to the bottom-right area of an ResourceDisplay.
ResourceDisplayPluginManager - Class in edu.stanford.smi.protegex.owl.ui.resourcedisplay
  The manager of all InstanceDisplayPlugins.
ResourceDisplayPluginManager() - Constructor for class edu.stanford.smi.protegex.owl.ui.resourcedisplay.ResourceDisplayPluginManager
ResourceFilterListModel - Class in edu.stanford.smi.protegex.owl.ui.resourceselection
  A ListModel for JComboBoxes and JLists that allows to select a frame by typing its prefix characters.
ResourceFilterListModel(Collection) - Constructor for class edu.stanford.smi.protegex.owl.ui.resourceselection.ResourceFilterListModel
ResourceFinder - Class in edu.stanford.smi.protegex.owl.ui.search.finder
ResourceFinder(FindAction) - Constructor for class edu.stanford.smi.protegex.owl.ui.search.finder.ResourceFinder
ResourceIgnoreCaseComparator - Class in edu.stanford.smi.protegex.owl.ui.resourceselection
  A Comparator for Frame instances that compares the lower case browser texts.
ResourceIgnoreCaseComparator() - Constructor for class edu.stanford.smi.protegex.owl.ui.resourceselection.ResourceIgnoreCaseComparator
ResourceListener - Interface in edu.stanford.smi.protegex.owl.model.event
resourceListener - Variable in class edu.stanford.smi.protegex.owl.ui.properties.OWLPropertySubpropertyRoot
ResourceListFinder - Class in edu.stanford.smi.protegex.owl.ui.search
ResourceListFinder(JList, String) - Constructor for class edu.stanford.smi.protegex.owl.ui.search.ResourceListFinder
ResourceListFinder(JList, String, Icon) - Constructor for class edu.stanford.smi.protegex.owl.ui.search.ResourceListFinder
ResourceListWidget - Class in edu.stanford.smi.protegex.owl.ui.widget
  Deprecated. no longer really needed
ResourceListWidget() - Constructor for class edu.stanford.smi.protegex.owl.ui.widget.ResourceListWidget
  Deprecated.
resourceNameChanged(RDFResource, String) - Method in class edu.stanford.smi.protegex.owl.model.event.ModelAdapter
  Deprecated. Use `ModelAdapter.resourceReplaced(RDFResource, RDFResource, String)`
resourceNameChanged(RDFResource, String) - Method in interface edu.stanford.smi.protegex.owl.model.event.ModelListener
  Called after the name of a resource has changed.
ResourceNameMatcher - Interface in edu.stanford.smi.protegex.owl.ui.code
  An interface for objects that determine which resources could be inserted when the user presses tab/CTRL+Space in a SymbolTextField.
resourcePanel - Variable in class edu.stanford.smi.protegex.owl.ui.cls.OWLClassesTab
ResourcePanel - Interface in edu.stanford.smi.protegex.owl.ui.resourcedisplay
  An interface for user interface components that display a given RDFResource as a form.
ResourcePanelFactory - Interface in edu.stanford.smi.protegex.owl.ui.resourcedisplay
  A factory of ResourcePanels, used by the ProtegeUI class.
ResourceRenderer - Class in edu.stanford.smi.protegex.owl.ui
  A FrameRenderer which displays a small A behind those anonymous classes that do have annotation properties.
ResourceRenderer() - Constructor for class edu.stanford.smi.protegex.owl.ui.ResourceRenderer
ResourceRenderer(boolean) - Constructor for class edu.stanford.smi.protegex.owl.ui.ResourceRenderer
ResourceRenderer(Slot) - Constructor for class edu.stanford.smi.protegex.owl.ui.ResourceRenderer
ResourceRenderer(Slot, boolean) - Constructor for class edu.stanford.smi.protegex.owl.ui.ResourceRenderer
ResourceRendererWithBrowserText - Class in edu.stanford.smi.protegex.owl.ui
ResourceRendererWithBrowserText(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.ui.ResourceRendererWithBrowserText
resourceReplaced(RDFResource, RDFResource, String) - Method in class edu.stanford.smi.protegex.owl.model.event.ModelAdapter
resourceReplaced(RDFResource, RDFResource, String) - Method in class edu.stanford.smi.protegex.owl.model.event.PropertyValueAdapter
resourceSelected(RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.classform.component.property.AddIndividualAction
resourceSelected(RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.classform.component.property.AddNamedClassAction
resourceSelected(RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.classform.form.AddPropertyFormComponentAction
resourceSelected(RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.clsproperties.AddPropertyAction
resourceSelected(RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.components.AddResourceAction
resourceSelected(RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.components.singleresource.SetResourceAction
resourceSelected(RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.components.triples.AddResourceAction
resourceSelected(RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.components.triples.CreateValueAction
resourceSelected(RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.existential.ExistentialAction
resourceSelected(RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.properties.domain.AddClassToDomainAction
resourceSelected(RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.resourcedisplay.AddPropertyWidgetToFormAction
resourceSelected(RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.resourcedisplay.RemovePropertyWidgetFromFormAction
resourceSelected(RDFResource) - Method in interface edu.stanford.smi.protegex.owl.ui.resourceselection.ResourceSelectionListener
ResourceSelectionAction - Class in edu.stanford.smi.protegex.owl.ui.resourceselection
  An Action that requires the selection of an RDFResource from a List.
ResourceSelectionAction(String, Icon) - Constructor for class edu.stanford.smi.protegex.owl.ui.resourceselection.ResourceSelectionAction
  Constructs a new ResourceSelectionAction.
ResourceSelectionAction(String, Icon, boolean) - Constructor for class edu.stanford.smi.protegex.owl.ui.resourceselection.ResourceSelectionAction
  Constructs a new ResourceSelectionAction.
ResourceSelectionComboBox - Class in edu.stanford.smi.protegex.owl.ui.resourceselection
  A JComboBox that can be used to select an RDFResource from a sorted list.
ResourceSelectionComboBox(Collection, ResourceSelectionListener) - Constructor for class edu.stanford.smi.protegex.owl.ui.resourceselection.ResourceSelectionComboBox
ResourceSelectionComboBox(Component, Collection, ResourceSelectionListener) - Constructor for class edu.stanford.smi.protegex.owl.ui.resourceselection.ResourceSelectionComboBox
ResourceSelectionComboBox(Component, Collection, ResourceSelectionListener, ListCellRenderer) - Constructor for class edu.stanford.smi.protegex.owl.ui.resourceselection.ResourceSelectionComboBox
ResourceSelectionListener - Interface in edu.stanford.smi.protegex.owl.ui.resourceselection
  The interface used by the ResourceSelectionComboBox to specify the action that is to be performed when the user has selected a resource.
REST - Static variable in interface edu.stanford.smi.protegex.owl.model.RDFNames.Slot
REST - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLConstants.BuiltIns
  Deprecated.
restoreWidgetsAfterSave(OWLModel) - Static method in class edu.stanford.smi.protegex.owl.ui.menu.OWLMenuProjectPlugin
Restriction(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParser
RESTRICTION - Static variable in interface edu.stanford.smi.protegex.owl.model.OWLNames.Cls
RestrictionCreatorUtility - Class in edu.stanford.smi.protegex.owl.jena.parser
RestrictionCreatorUtility() - Constructor for class edu.stanford.smi.protegex.owl.jena.parser.RestrictionCreatorUtility
RestrictionEditorPanel - Class in edu.stanford.smi.protegex.owl.ui.restrictions
  A panel that allows to completely define a restriction.
RestrictionEditorPanel(OWLModel, Cls, RDFProperty, String, RDFSClass) - Constructor for class edu.stanford.smi.protegex.owl.ui.restrictions.RestrictionEditorPanel
RestrictionKindRenderer - Class in edu.stanford.smi.protegex.owl.ui.restrictions
RestrictionKindRenderer() - Constructor for class edu.stanford.smi.protegex.owl.ui.restrictions.RestrictionKindRenderer
RESTRICTIONS_CAN_USE_BROWSER_TEXT - Static variable in class edu.stanford.smi.protegex.owl.model.classparser.ParserUtils
RestrictionTreeNode - Class in edu.stanford.smi.protegex.owl.ui.clsproperties
RestrictionTreeNode() - Constructor for class edu.stanford.smi.protegex.owl.ui.clsproperties.RestrictionTreeNode
RestrictionUpdater - Interface in edu.stanford.smi.protegex.owl.model.framestore.updater
  An object capable of mapping restrictions into facet overrides, and vice versa.
RESULT_ERROR - Static variable in interface edu.stanford.smi.protegex.owl.ui.dialogs.ModalDialogFactory
ResultsPanel - Class in edu.stanford.smi.protegex.owl.ui.results
  The base class of components that can appear in the results area in the bottom of the screen.
ResultsPanel() - Constructor for class edu.stanford.smi.protegex.owl.ui.results.ResultsPanel
  Deprecated. please use the other constructor
ResultsPanel(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.ui.results.ResultsPanel
ResultsPanelManager - Class in edu.stanford.smi.protegex.owl.ui.results
  A Singleton that manages the ResultsPanels in the current ProjectView.
ResultsPanelManager() - Constructor for class edu.stanford.smi.protegex.owl.ui.results.ResultsPanelManager
resultsUpdatedEvent(int, Find) - Method in class edu.stanford.smi.protegex.owl.ui.search.finder.SearchAdapter
resultsUpdatedEvent(int, Find) - Method in interface edu.stanford.smi.protegex.owl.ui.search.finder.SearchListener
ResultsViewModelFind - Class in edu.stanford.smi.protegex.owl.ui.search.finder
  Checks the name, current browser slot and any synonym slots allocated
ResultsViewModelFind(OWLModel, int) - Constructor for class edu.stanford.smi.protegex.owl.ui.search.finder.ResultsViewModelFind
RetainFindResultsPanel - Class in edu.stanford.smi.protegex.owl.ui.search.finder
  A JPanel for modal dialogs that can be used to String-matching search for a certain value of a selected Slot.
RetainFindResultsPanel(Find, AbstractFindResultsView) - Constructor for class edu.stanford.smi.protegex.owl.ui.search.finder.RetainFindResultsPanel
RetainFindResultsPanel(OWLModel, FindResultsPanel) - Constructor for class edu.stanford.smi.protegex.owl.ui.search.finder.RetainFindResultsPanel
reworkHeaderComponent() - Method in class edu.stanford.smi.protegex.owl.ui.resourcedisplay.ResourceDisplay
RING_CHAR - Static variable in class edu.stanford.smi.protegex.owl.swrl.parser.SWRLParser
ROLE_FILLERS - Static variable in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGVocabulary.Ask
ROLE_SET - Static variable in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGVocabulary.Response
ROOT_FOLDER - Static variable in class edu.stanford.smi.protegex.owl.jena.Jena
  Deprecated. use ProtegeOWL.PLUGIN_FOLDER instead
ROUND - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLConstants.BuiltIns
  Deprecated.
ROUND - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.CoreBuiltIns
ROUND_HALF_TO_EVEN - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLConstants.BuiltIns
  Deprecated.
ROUND_HALF_TO_EVEN - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.CoreBuiltIns
rows - Variable in class edu.stanford.smi.protegex.owl.ui.owltable.OWLTableTransferHandler
RULE_GROUP - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.Annotations
run() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.AbstractSingleConceptWithConceptCollectionResultTask
run() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.ClassifyTaxonomyTask
run() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.GetConceptIntersectionSuperclassesTask
run() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.GetConceptSatisfiableTask
run() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.GetIndividualInferredTypesTask
run() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.GetIndividualsBelongingToConceptTask
run() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.GetSubsumptionRelationshipTask
run() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.IsConceptIntersectionSatisfiableTask
run() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.IsDisjointToTask
  Executes the task.
run() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.IsSubsumedByTask
  Executes the task.
run() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.ResetInferredHierarchyTask
run() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.SynchronizeReasonerTask
run() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.UpdateEquivalentClassesTask
run() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.UpdateInconsistentClassesTask
run() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.UpdateInferredHierarchyTask
run() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.UpdateInferredTypesTask
  Executes the task.
run() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.AbstractSingleConceptWithConceptCollectionResultTask
run() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.ClassifyTaxonomyTask
run() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.GetConceptSatisfiableTask
run() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.GetIndividualInferredTypesTask
run() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.GetIndividualPropertyValuesTask
run() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.GetIndividualsBelongingToConceptTask
run() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.IsConceptIntersectionSatisfiableTask
run() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.IsDisjointToTask
  Executes the task.
run() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.IsSubsumedByTask
  Executes the task.
run() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.ResetInferredHierarchyTask
run() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.SynchronizeReasonerTask
run() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.UpdateEquivalentClassesTask
run() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.UpdateInconsistentClassesTask
run() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.UpdateInferredHierarchyTask
run() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.UpdateInferredTypesTask
  Executes the task.
run() - Method in interface edu.stanford.smi.protegex.owl.inference.protegeowl.task.ReasonerTask
  Executes the task.
run(OWLModel) - Method in class edu.stanford.smi.protegex.owl.inference.ui.action.CheckConsistencyAction
run(OWLModel) - Method in class edu.stanford.smi.protegex.owl.inference.ui.action.ClassifyTaxonomyAction
run(OWLModel) - Method in class edu.stanford.smi.protegex.owl.inference.ui.action.ComputeInferredTypesAction
run(OWLModel) - Method in class edu.stanford.smi.protegex.owl.inference.ui.inspector.ShowReasonerInspectorAction
run(OWLModel) - Method in class edu.stanford.smi.protegex.owl.javacode.JavaCodeGeneratorAction
run(OntModel, Model) - Method in class edu.stanford.smi.protegex.owl.jena.creator.JenaCreator
run(URI) - Method in class edu.stanford.smi.protegex.owl.jena.parser.ProtegeOWLParser
  This method loads an ontology pointed to by the specified URI.
run(InputStream, String) - Method in class edu.stanford.smi.protegex.owl.jena.parser.ProtegeOWLParser
  This method loads an ontology from the specified input stream using the specified base uri.
run(Reader, String) - Method in class edu.stanford.smi.protegex.owl.jena.parser.ProtegeOWLParser
  This method loads an ontology using the specified Reader and using the specified base uri.
run() - Method in class edu.stanford.smi.protegex.owl.jena.rdf2owl.RDF2OWL
run(Task) - Method in class edu.stanford.smi.protegex.owl.model.DefaultTaskManager
run() - Method in class edu.stanford.smi.protegex.owl.model.impl.GetExpressionRootForAnonymousClassJob
run() - Method in class edu.stanford.smi.protegex.owl.model.impl.GetOwnerForAnonymousClassJob
run(Task) - Method in class edu.stanford.smi.protegex.owl.model.impl.NoopProgressDisplay
run(Task) - Method in interface edu.stanford.smi.protegex.owl.model.TaskManager
run(Task) - Method in interface edu.stanford.smi.protegex.owl.model.TaskProgressDisplay
  Runs the task and starts the display of progress to the user.
run() - Method in class edu.stanford.smi.protegex.owl.server.triplestore.GetPackage
run() - Method in class edu.stanford.smi.protegex.owl.storage.KnowledgeBaseCopier
run() - Method in class edu.stanford.smi.protegex.owl.storage.OWL2OWLCopier
run(OWLModel) - Method in class edu.stanford.smi.protegex.owl.swrl.ui.actions.EnableSWRLTabAction
run(OWLModel) - Method in interface edu.stanford.smi.protegex.owl.ui.actions.OWLModelAction
  Called when the action is executed by the user.
run(Triple) - Method in class edu.stanford.smi.protegex.owl.ui.actions.triple.DeleteTripleAction
run(Triple) - Method in interface edu.stanford.smi.protegex.owl.ui.actions.triple.TripleAction
  Performs the action to a given Triple.
run(OWLModel) - Method in class edu.stanford.smi.protegex.owl.ui.importstree.ImportsTreeAction
run() - Method in class edu.stanford.smi.protegex.owl.ui.importstree.server.CheckSetActiveImportAllowedJob
run() - Method in class edu.stanford.smi.protegex.owl.ui.importstree.server.SetActiveOntologyJob
run(OWLModel) - Method in class edu.stanford.smi.protegex.owl.ui.jena.JenaSchemagenAction
run(OWLModel) - Method in class edu.stanford.smi.protegex.owl.ui.menu.code.DIGAction
run(OWLModel) - Method in class edu.stanford.smi.protegex.owl.ui.menu.code.EMFAction
run(OWLModel) - Method in class edu.stanford.smi.protegex.owl.ui.menu.code.KazukiAction
run(OWLModel) - Method in class edu.stanford.smi.protegex.owl.ui.menu.code.SourceCodeAction
run(OWLModel) - Method in class edu.stanford.smi.protegex.owl.ui.menu.DublinCoreAction
run(OWLModel) - Method in class edu.stanford.smi.protegex.owl.ui.menu.preferences.PreferencesAction
run(OWLModel) - Method in class edu.stanford.smi.protegex.owl.ui.menu.ValidatorAction
run(OWLModel) - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.alldifferent.AllDifferentAction
run(OWLModel) - Method in class edu.stanford.smi.protegex.owl.ui.metrics.ShowMetricsAction
run(Task) - Method in class edu.stanford.smi.protegex.owl.ui.ProgressDisplayDialog
run(OWLTest[], Task) - Method in class edu.stanford.smi.protegex.owl.ui.query.FindAssertionsAction
run(Triple) - Method in class edu.stanford.smi.protegex.owl.ui.query.QueryTripleAction
run(OWLModel) - Method in class edu.stanford.smi.protegex.owl.ui.query.SPARQLOWLModelAction
run(OWLModel) - Method in class edu.stanford.smi.protegex.owl.ui.repository.ShowRepositoryEditorAction
run(OWLModel) - Method in class edu.stanford.smi.protegex.owl.ui.testing.AbstractOWLModelTestAction
run(OWLTest[], Task) - Method in class edu.stanford.smi.protegex.owl.ui.testing.AbstractOWLTestAction
run(OWLTest[], Task) - Method in class edu.stanford.smi.protegex.owl.ui.testing.OWLTestAction
run(OWLTest[], Task) - Method in class edu.stanford.smi.protegex.owl.ui.testing.OWLTestInstanceAction
run(OWLModel) - Method in class edu.stanford.smi.protegex.owl.ui.testing.OWLTestSettingsAction
  Deprecated.
run(OWLTest[], Task) - Method in class edu.stanford.smi.protegex.owl.ui.testing.ShowTodoListAction
run() - Method in class edu.stanford.smi.protegex.owl.ui.widget.ModalProgressBarDialog
run() - Method in class edu.stanford.smi.protegex.owl.util.job.GetIsIncludedJob
run() - Method in class edu.stanford.smi.protegex.owl.util.job.GetTripleStoreOfTripleJob
runInHomeTripleStoreOf(RDFResource, Runnable) - Static method in class edu.stanford.smi.protegex.owl.model.triplestore.TripleStoreUtil
runInTripleStore(OWLModel, TripleStore, Runnable) - Static method in class edu.stanford.smi.protegex.owl.model.triplestore.TripleStoreUtil
RunnableReasonerAction - Interface in edu.stanford.smi.protegex.owl.inference.ui
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Aug 23, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
runOWLClsTest(List, RDFSClassTest) - Method in class edu.stanford.smi.protegex.owl.ui.testing.AbstractOWLTestAction
runOWLInstanceTest(List, RDFResourceTest) - Method in class edu.stanford.smi.protegex.owl.ui.testing.AbstractOWLTestAction
runOWLModelTest(List, OWLModelTest) - Method in class edu.stanford.smi.protegex.owl.ui.testing.AbstractOWLTestAction
runOWLPropertyTest(List, RDFPropertyTest) - Method in class edu.stanford.smi.protegex.owl.ui.testing.AbstractOWLTestAction
runsWithGUI(OWLModel) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
runTask() - Method in interface edu.stanford.smi.protegex.owl.model.Task

## S

S - Static variable in class edu.stanford.smi.protegex.owl.model.util.DLExpressivityChecker
SAME_AS - Static variable in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGVocabulary.Tell
SAME_AS - Static variable in interface edu.stanford.smi.protegex.owl.model.OWLNames.Slot
SAME_INDIVIDUAL_ATOM - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.Cls
SameAs_between_Classes - Static variable in class edu.stanford.smi.protegex.owl.ui.profiles.OWLProfiles
SameAs_between_Properties - Static variable in class edu.stanford.smi.protegex.owl.ui.profiles.OWLProfiles
samePrefixMappingAs(PrefixMapping) - Method in class edu.stanford.smi.protegex.owl.jena.graph.ProtegePrefixMapping
SANITY_GROUP - Static variable in class edu.stanford.smi.protegex.owl.testing.AbstractOWLTest
SATISFIABLE - Static variable in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGVocabulary.Ask
save(URI) - Method in class edu.stanford.smi.protegex.owl.jena.JenaOWLModel
  Saves the current OWLModel in the standard format.
save(URI, String, Collection) - Method in class edu.stanford.smi.protegex.owl.jena.JenaOWLModel
  Writes the base model of this into a given file.
save(OutputStream, String, Collection) - Method in class edu.stanford.smi.protegex.owl.jena.JenaOWLModel
  Deprecated. please use the version with the URIs or access the OntModel directly
save(URI, String, Collection, OntModel) - Method in class edu.stanford.smi.protegex.owl.jena.JenaOWLModel
save(File, OntModel, String, String) - Static method in class edu.stanford.smi.protegex.owl.jena.JenaOWLModel
  Deprecated. -Use save(File file, OntModel ontModel, String language, String namespace, String xmlBase)
save(File, OntModel, String, String, String) - Static method in class edu.stanford.smi.protegex.owl.jena.JenaOWLModel
save(OutputStream, String, Collection, OntModel) - Method in class edu.stanford.smi.protegex.owl.jena.JenaOWLModel
  Deprecated. please use the version with the URIs or access the OntModel directly
SAVE_FORMS_KEY - Static variable in class edu.stanford.smi.protegex.owl.ui.forms.AbsoluteFormsGenerator
SAVE_INFERRED - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
saveAll(OWLModel, URI) - Static method in class edu.stanford.smi.protegex.owl.jena.protege2jena.Protege2Jena
saveAll(OWLModel, URI, String) - Static method in class edu.stanford.smi.protegex.owl.jena.protege2jena.Protege2Jena
saveAndReloadProject() - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
saveContents() - Method in class edu.stanford.smi.protegex.owl.jena.JenaKnowledgeBaseSourcesEditor
saveContents() - Method in class edu.stanford.smi.protegex.owl.ui.dialogs.SelectOWLClsesPanel
saveContents() - Method in class edu.stanford.smi.protegex.owl.ui.projectview.ConfigureTabsPanel
saveContents() - Method in class edu.stanford.smi.protegex.owl.ui.triplestore.AddTripleStorePanel
saveGlobalRepositories() - Method in class edu.stanford.smi.protegex.owl.repository.util.RepositoryFileManager
saveKnowledgeBase(KnowledgeBase, PropertyList, Collection) - Method in class edu.stanford.smi.protegex.owl.database.OWLDatabaseKnowledgeBaseFactory
saveKnowledgeBase(KnowledgeBase, PropertyList, Collection) - Method in class edu.stanford.smi.protegex.owl.jena.JenaKnowledgeBaseFactory
saveModel(OutputStream, Model, String, String) - Static method in class edu.stanford.smi.protegex.owl.jena.JenaOWLModel
  Deprecated. Use
saveModel(OutputStream, Model, String, String, String) - Static method in class edu.stanford.smi.protegex.owl.jena.JenaOWLModel
saveOntModel(OWLModel, File, OntModel, String) - Static method in class edu.stanford.smi.protegex.owl.jena.Jena
saveOntModel(OntModel, String) - Static method in class edu.stanford.smi.protegex.owl.ui.profiles.ProfilesManager
saveProjectRepositories(OWLModel) - Static method in class edu.stanford.smi.protegex.owl.repository.util.RepositoryFileManager
saveProjectRepositories(URI) - Method in class edu.stanford.smi.protegex.owl.repository.util.RepositoryFileManager
saveProjectRepositories() - Method in class edu.stanford.smi.protegex.owl.repository.util.RepositoryFileManager
savePropertyFile(File) - Method in class edu.stanford.smi.protegex.owl.ui.subsumption.ChangedClassesPanel
saveToFile(File) - Method in class edu.stanford.smi.protegex.owl.ui.testing.OWLTestResultsTableModel
  Saves the entries of this TableModel to a text file.
SCALABLE_FRAME_COUNT - Static variable in class edu.stanford.smi.protegex.owl.ui.clsdesc.manchester.ManchesterOWLTextPane
SCALABLE_FRAME_COUNT - Static variable in class edu.stanford.smi.protegex.owl.ui.code.OWLResourceNameMatcher
SCALABLE_FRAME_COUNT - Static variable in class edu.stanford.smi.protegex.owl.ui.code.SymbolTextField
SCHEMA - Static variable in class edu.stanford.smi.protegex.owl.ui.menu.code.KazukiAction
SearchAdapter - Class in edu.stanford.smi.protegex.owl.ui.search.finder
SearchAdapter() - Constructor for class edu.stanford.smi.protegex.owl.ui.search.finder.SearchAdapter
searchCancelledEvent(Find) - Method in class edu.stanford.smi.protegex.owl.ui.search.finder.SearchAdapter
searchCancelledEvent(Find) - Method in interface edu.stanford.smi.protegex.owl.ui.search.finder.SearchListener
searchCompleteEvent(int, Find) - Method in class edu.stanford.smi.protegex.owl.ui.search.finder.SearchAdapter
searchCompleteEvent(int, Find) - Method in interface edu.stanford.smi.protegex.owl.ui.search.finder.SearchListener
searchComponentOfType(Container, Class) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.OWLUI
searchEvent(Find) - Method in class edu.stanford.smi.protegex.owl.ui.search.finder.SearchAdapter
searchEvent(Find) - Method in interface edu.stanford.smi.protegex.owl.ui.search.finder.SearchListener
SearchListener - Interface in edu.stanford.smi.protegex.owl.ui.search.finder
SearchNamedClassAction - Class in edu.stanford.smi.protegex.owl.ui.search
SearchNamedClassAction() - Constructor for class edu.stanford.smi.protegex.owl.ui.search.SearchNamedClassAction
SearchNamedClassPanel - Class in edu.stanford.smi.protegex.owl.ui.search
  A JPanel for modal dialogs that can be used to String-matching search for a certain value of a selected Slot.
SearchNamedClassPanel(RDFSNamedClass) - Constructor for class edu.stanford.smi.protegex.owl.ui.search.SearchNamedClassPanel
searchOnSlot(Slot, String, String, int) - Method in class edu.stanford.smi.protegex.owl.ui.search.finder.BasicFind
SearchSettingsPanel - Class in edu.stanford.smi.protegex.owl.ui.menu.preferences
SearchSettingsPanel(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.ui.menu.preferences.SearchSettingsPanel
searchStartedEvent(Find) - Method in class edu.stanford.smi.protegex.owl.ui.search.finder.SearchAdapter
searchStartedEvent(Find) - Method in interface edu.stanford.smi.protegex.owl.ui.search.finder.SearchListener
searchTypeString - Static variable in interface edu.stanford.smi.protegex.owl.ui.search.finder.Find
SecondaryHierarchyPanel - Class in edu.stanford.smi.protegex.owl.ui.cls
SecondaryHierarchyPanel(Hierarchy, HierarchyManager) - Constructor for class edu.stanford.smi.protegex.owl.ui.cls.SecondaryHierarchyPanel
SEE_ALSO - Static variable in interface edu.stanford.smi.protegex.owl.model.RDFSNames.Slot
Select - Static variable in class edu.stanford.smi.protegex.owl.swrl.model.SQWRLNames
select(Object) - Method in class edu.stanford.smi.protegex.owl.ui.subsumption.SubsumptionTreeFinder
SELECT_ACTIVE_TRIPLESTORE - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
SELECT_CLASS_TITLE - Static variable in class edu.stanford.smi.protegex.owl.ui.dialogs.AbstractSelectionDialogFactory
SELECT_FILE - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
SELECT_PROPERTY_TITLE - Static variable in class edu.stanford.smi.protegex.owl.ui.dialogs.AbstractSelectionDialogFactory
SELECT_RESOURCE_TITLE - Static variable in class edu.stanford.smi.protegex.owl.ui.dialogs.AbstractSelectionDialogFactory
SELECT_RESOURCES_TITLE - Static variable in class edu.stanford.smi.protegex.owl.ui.dialogs.AbstractSelectionDialogFactory
selectAll() - Method in class edu.stanford.smi.protegex.owl.ui.resourcedisplay.InstanceNameComponent
selectAll() - Method in class edu.stanford.smi.protegex.owl.ui.resourcedisplay.InstanceNameEditor
selectClass(Component, OWLModel) - Method in class edu.stanford.smi.protegex.owl.ui.dialogs.AbstractSelectionDialogFactory
selectClass(Component, OWLModel, RDFSNamedClass, String) - Method in class edu.stanford.smi.protegex.owl.ui.dialogs.AbstractSelectionDialogFactory
selectClass(Component, OWLModel, Collection, String) - Method in class edu.stanford.smi.protegex.owl.ui.dialogs.AbstractSelectionDialogFactory
selectClass(Component, OWLModel, Collection) - Method in class edu.stanford.smi.protegex.owl.ui.dialogs.AbstractSelectionDialogFactory
selectClass(Component, OWLModel, String) - Method in class edu.stanford.smi.protegex.owl.ui.dialogs.AbstractSelectionDialogFactory
selectClass(Component, OWLModel, Collection, String) - Method in class edu.stanford.smi.protegex.owl.ui.dialogs.DefaultSelectionDialogFactory
selectClass(Component, OWLModel) - Method in interface edu.stanford.smi.protegex.owl.ui.dialogs.SelectionDialogFactory
selectClass(Component, OWLModel, String) - Method in interface edu.stanford.smi.protegex.owl.ui.dialogs.SelectionDialogFactory
selectClass(Component, OWLModel, Collection) - Method in interface edu.stanford.smi.protegex.owl.ui.dialogs.SelectionDialogFactory
selectClass(Component, OWLModel, Collection, String) - Method in interface edu.stanford.smi.protegex.owl.ui.dialogs.SelectionDialogFactory
selectClass(Component, OWLModel, RDFSNamedClass, String) - Method in interface edu.stanford.smi.protegex.owl.ui.dialogs.SelectionDialogFactory
selectClasses(Component, OWLModel, RDFSNamedClass, String) - Method in class edu.stanford.smi.protegex.owl.ui.dialogs.AbstractSelectionDialogFactory
selectClasses(Component, OWLModel, String) - Method in class edu.stanford.smi.protegex.owl.ui.dialogs.AbstractSelectionDialogFactory
selectClasses(Component, OWLModel, Collection, String) - Method in class edu.stanford.smi.protegex.owl.ui.dialogs.DefaultSelectionDialogFactory
selectClasses(Component, OWLModel, String) - Method in interface edu.stanford.smi.protegex.owl.ui.dialogs.SelectionDialogFactory
selectClasses(Component, OWLModel, RDFSNamedClass, String) - Method in interface edu.stanford.smi.protegex.owl.ui.dialogs.SelectionDialogFactory
selectClasses(Component, OWLModel, Collection, String) - Method in interface edu.stanford.smi.protegex.owl.ui.dialogs.SelectionDialogFactory
SelectClassPanel - Class in edu.stanford.smi.protegex.owl.ui.dialogs
  A general purpose component for selecting a class from a tree that also allows classes to be added (and their names edited inline)
SelectClassPanel(OWLModel, Collection, boolean, boolean) - Constructor for class edu.stanford.smi.protegex.owl.ui.dialogs.SelectClassPanel
selectDatatype(Component, OWLModel) - Method in class edu.stanford.smi.protegex.owl.ui.dialogs.DefaultSelectionDialogFactory
selectDatatype(Component, OWLModel) - Method in interface edu.stanford.smi.protegex.owl.ui.dialogs.SelectionDialogFactory
SelectDistinct - Static variable in class edu.stanford.smi.protegex.owl.swrl.model.SQWRLNames
selectFrame(Collection, JComponent, int, ResourceSelectionListener) - Static method in class edu.stanford.smi.protegex.owl.ui.resourceselection.ResourceSelectionComboBox
SelectInstanceFromCollectionPanelWithFinder - Class in edu.stanford.smi.protegex.owl.ui.dialogs
  Panel to allow a user to pick a single instance from a collection of instances.
SelectInstanceFromCollectionPanelWithFinder(Collection, int) - Constructor for class edu.stanford.smi.protegex.owl.ui.dialogs.SelectInstanceFromCollectionPanelWithFinder
selectionChanged(SelectionEvent) - Method in class edu.stanford.smi.protegex.owl.ui.navigation.TabNavigationHistorySelectable
SelectionDialogFactory - Interface in edu.stanford.smi.protegex.owl.ui.dialogs
  An interface for user interface dialogs to select resources from a list or tree.
selectLocalName() - Method in class edu.stanford.smi.protegex.owl.ui.resourcedisplay.InstanceNameEditor
selectNecessaryIfNothingSelected() - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTable
SelectOWLClsesPanel - Class in edu.stanford.smi.protegex.owl.ui.dialogs
SelectOWLClsesPanel(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.ui.dialogs.SelectOWLClsesPanel
SelectOWLClsesPanel(OWLModel, DefaultRenderer) - Constructor for class edu.stanford.smi.protegex.owl.ui.dialogs.SelectOWLClsesPanel
SelectOWLClsesPanel(OWLModel, Collection) - Constructor for class edu.stanford.smi.protegex.owl.ui.dialogs.SelectOWLClsesPanel
SelectOWLClsesPanel(OWLModel, Collection, boolean) - Constructor for class edu.stanford.smi.protegex.owl.ui.dialogs.SelectOWLClsesPanel
selectProperty(OWLModel, Container, RDFProperty) - Static method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsWidget
selectProperty(Component, OWLModel, Collection) - Method in class edu.stanford.smi.protegex.owl.ui.dialogs.AbstractSelectionDialogFactory
selectProperty(Component, OWLModel, Collection, String) - Method in class edu.stanford.smi.protegex.owl.ui.dialogs.DefaultSelectionDialogFactory
selectProperty(Component, OWLModel, Collection) - Method in interface edu.stanford.smi.protegex.owl.ui.dialogs.SelectionDialogFactory
selectProperty(Component, OWLModel, Collection, String) - Method in interface edu.stanford.smi.protegex.owl.ui.dialogs.SelectionDialogFactory
SelectRepositoryTypeWizardPage - Class in edu.stanford.smi.protegex.owl.ui.repository.wizard
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Sep 26, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
SelectRepositoryTypeWizardPage(RepositoryWizard, OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.ui.repository.wizard.SelectRepositoryTypeWizardPage
selectResource(Collection, JComponent, int, ResourceSelectionListener, ListCellRenderer) - Static method in class edu.stanford.smi.protegex.owl.ui.resourceselection.ResourceSelectionComboBox
selectResource() - Method in class edu.stanford.smi.protegex.owl.ui.search.finder.FindResultsPanel
selectResource(RDFResource, HostResourceDisplay) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.OWLUI
  Select a class or other resource - works even when the caller is in a dialog.
selectResourceByType(Component, OWLModel, Collection) - Method in class edu.stanford.smi.protegex.owl.ui.dialogs.AbstractSelectionDialogFactory
selectResourceByType(Component, OWLModel, Collection, String) - Method in class edu.stanford.smi.protegex.owl.ui.dialogs.DefaultSelectionDialogFactory
selectResourceByType(Component, OWLModel, Collection) - Method in interface edu.stanford.smi.protegex.owl.ui.dialogs.SelectionDialogFactory
selectResourceByType(Component, OWLModel, Collection, String) - Method in interface edu.stanford.smi.protegex.owl.ui.dialogs.SelectionDialogFactory
selectResourceFromCollection(Component, OWLModel, Collection, String) - Method in class edu.stanford.smi.protegex.owl.ui.dialogs.DefaultSelectionDialogFactory
selectResourceFromCollection(Component, OWLModel, Collection, String) - Method in interface edu.stanford.smi.protegex.owl.ui.dialogs.SelectionDialogFactory
selectResourcesByType(OWLModel, Collection) - Method in class edu.stanford.smi.protegex.owl.ui.components.AddResourceAction
selectResourcesByType(OWLModel, Collection) - Method in class edu.stanford.smi.protegex.owl.ui.components.AddResourcesWithBrowserTextAction
selectResourcesByType(Component, OWLModel, Collection) - Method in class edu.stanford.smi.protegex.owl.ui.dialogs.AbstractSelectionDialogFactory
selectResourcesByType(Component, OWLModel, Collection, String) - Method in class edu.stanford.smi.protegex.owl.ui.dialogs.DefaultSelectionDialogFactory
selectResourcesByType(Component, OWLModel, Collection) - Method in interface edu.stanford.smi.protegex.owl.ui.dialogs.SelectionDialogFactory
selectResourcesByType(Component, OWLModel, Collection, String) - Method in interface edu.stanford.smi.protegex.owl.ui.dialogs.SelectionDialogFactory
selectResourcesFromCollection(Component, OWLModel, Collection, String) - Method in class edu.stanford.smi.protegex.owl.ui.dialogs.DefaultSelectionDialogFactory
selectResourcesFromCollection(Component, OWLModel, Collection, String) - Method in interface edu.stanford.smi.protegex.owl.ui.dialogs.SelectionDialogFactory
SelectResourcesFromCollectionPanel - Class in edu.stanford.smi.protegex.owl.ui.dialogs
SelectResourcesFromCollectionPanel(Collection) - Constructor for class edu.stanford.smi.protegex.owl.ui.dialogs.SelectResourcesFromCollectionPanel
SelectResourcesPanel - Class in edu.stanford.smi.protegex.owl.ui.dialogs
SelectResourcesPanel(OWLModel, Collection) - Constructor for class edu.stanford.smi.protegex.owl.ui.dialogs.SelectResourcesPanel
SelectResourcesPanel(OWLModel, Collection, boolean) - Constructor for class edu.stanford.smi.protegex.owl.ui.dialogs.SelectResourcesPanel
selectResourcesWithBrowserTextByType(Component, OWLModel, Collection, String) - Method in class edu.stanford.smi.protegex.owl.ui.dialogs.DefaultSelectionDialogFactory
SelectResourcesWithBrowserTextPanel - Class in edu.stanford.smi.protegex.owl.ui.dialogs
SelectResourcesWithBrowserTextPanel(OWLModel, Collection, boolean) - Constructor for class edu.stanford.smi.protegex.owl.ui.dialogs.SelectResourcesWithBrowserTextPanel
selectResourceWithBrowserTextByType(Component, OWLModel, Collection, String) - Method in class edu.stanford.smi.protegex.owl.ui.dialogs.DefaultSelectionDialogFactory
SEPARATOR - Static variable in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFSLiteral
SEPARATOR_CHAR - Static variable in class edu.stanford.smi.protegex.owl.repository.impl.DatabaseRepository
SeparatorCellRenderer - Class in edu.stanford.smi.protegex.owl.ui.conditions
  A DefaultTableCellRenderer (derived from JLabel) used to display separators in the ConditionsTable.
SeparatorCellRenderer(boolean) - Constructor for class edu.stanford.smi.protegex.owl.ui.conditions.SeparatorCellRenderer
SEQ - Static variable in interface edu.stanford.smi.protegex.owl.model.RDFNames.Cls
set(Iterator) - Static method in class edu.stanford.smi.protegex.owl.jena.Jena
  Converts an Iterator (e.g.
set(Set, Iterator) - Static method in class edu.stanford.smi.protegex.owl.jena.Jena
  Converts an Iterator (e.g.
SET_ACTIVE_IMPORT - Static variable in class edu.stanford.smi.protegex.owl.server.metaproject.OwlMetaProjectConstants
SET_MODE - Static variable in class edu.stanford.smi.protegex.owl.javacode.ProjectBasedJavaCodeGeneratorOptions
setAbstract(boolean) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeCls
  Deprecated. no OWL equivalent
setAbstract(Cls, boolean) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not supported in OWL
setAbstractMode(boolean) - Method in interface edu.stanford.smi.protegex.owl.javacode.EditableJavaCodeGeneratorOptions
setAbstractMode(boolean) - Method in class edu.stanford.smi.protegex.owl.javacode.ProjectBasedJavaCodeGeneratorOptions
setActivated(boolean) - Static method in class edu.stanford.smi.protegex.owl.ui.resourceselection.ResourceSelectionAction
setActiveOntology(OWLModel, OWLOntology) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
setActiveOntology(OWLOntology) - Method in class edu.stanford.smi.protegex.owl.ui.importstree.server.ActiveOntologyFrameStoreHandler
SetActiveOntologyJob - Class in edu.stanford.smi.protegex.owl.ui.importstree.server
SetActiveOntologyJob(OWLModel, OWLOntology) - Constructor for class edu.stanford.smi.protegex.owl.ui.importstree.server.SetActiveOntologyJob
setActiveTripleStore(TripleStore) - Method in class edu.stanford.smi.protegex.owl.model.triplestore.impl.TripleStoreModelImpl
setActiveTripleStore(TripleStore) - Method in interface edu.stanford.smi.protegex.owl.model.triplestore.TripleStoreModel
  Specifies which TripleStore shall be the active one for future write operations.
setActiveTripleStore(TripleStore) - Method in class edu.stanford.smi.protegex.owl.server.triplestore.ClientTripleStoreModel
setActiveType(Class) - Method in class edu.stanford.smi.protegex.owl.ui.cls.SwitchableClassDefinitionWidget
setAddActionIconBase(String) - Method in class edu.stanford.smi.protegex.owl.ui.properties.OWLSuperpropertiesPanel
setAddRepositoryEnabled(boolean) - Method in class edu.stanford.smi.protegex.owl.ui.repository.AbstractRepositoriesPanel
setAllDifferentMemberChangedListener(AllDifferentMemberChangedListener) - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.alldifferent.AllDifferentEditorPanel
setAllMode(boolean) - Method in class edu.stanford.smi.protegex.owl.ui.widget.MultiWidgetPropertyWidget
setAllowedClses(Slot, Collection) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
setAllowedClses(Collection) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeSlot
  Deprecated.
setAllowedParents(Slot, Collection) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not supported in OWL
setAllowedParents(Collection) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeSlot
  Deprecated. set the value of the protege:allowedParents property directly
setAllowedValues(Slot, Collection) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not supported in OWL
setAllowedValues(Collection) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeSlot
  Deprecated. set an OWLDataRange as range
setAllowReadOnlyEdit(boolean) - Method in class edu.stanford.smi.protegex.owl.ui.components.triples.TriplesTableModel
setAllowsMultipleValues(Slot, boolean) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
setAllowsMultipleValues(boolean) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeSlot
  Deprecated.
setAllValuesFrom(RDFResource) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLAllValuesFrom
setAllValuesFrom(RDFResource) - Method in interface edu.stanford.smi.protegex.owl.model.OWLAllValuesFrom
  Sets the owl:allValuesFrom filler.
setAnnotationProperty(boolean) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLProperty
setArgument1(RDFResource) - Method in class edu.stanford.smi.protegex.owl.swrl.model.impl.AbstractSWRLIndividualsAtom
setArgument1(RDFResource) - Method in class edu.stanford.smi.protegex.owl.swrl.model.impl.DefaultSWRLClassAtom
setArgument1(RDFObject) - Method in class edu.stanford.smi.protegex.owl.swrl.model.impl.DefaultSWRLDataRangeAtom
  This argument is either an RDFList of RDFSLiterals, or a SWRLVariable.
setArgument1(RDFResource) - Method in class edu.stanford.smi.protegex.owl.swrl.model.impl.DefaultSWRLDatavaluedPropertyAtom
setArgument1(RDFResource) - Method in class edu.stanford.smi.protegex.owl.swrl.model.impl.DefaultSWRLIndividualPropertyAtom
setArgument1(RDFResource) - Method in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLClassAtom
setArgument1(RDFObject) - Method in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLDataRangeAtom
  This argument is either an RDFList of RDFSLiterals, or a SWRLVariable.
setArgument1(RDFResource) - Method in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLDatavaluedPropertyAtom
setArgument1(RDFResource) - Method in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLIndividualPropertyAtom
setArgument1(RDFResource) - Method in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLIndividualsAtom
setArgument2(RDFResource) - Method in class edu.stanford.smi.protegex.owl.swrl.model.impl.AbstractSWRLIndividualsAtom
setArgument2(RDFObject) - Method in class edu.stanford.smi.protegex.owl.swrl.model.impl.DefaultSWRLDatavaluedPropertyAtom
setArgument2(RDFResource) - Method in class edu.stanford.smi.protegex.owl.swrl.model.impl.DefaultSWRLIndividualPropertyAtom
setArgument2(RDFObject) - Method in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLDatavaluedPropertyAtom
setArgument2(RDFResource) - Method in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLIndividualPropertyAtom
setArgument2(RDFResource) - Method in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLIndividualsAtom
setArgumentCheckingEnabled(boolean) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not needed
setArguments(RDFList) - Method in class edu.stanford.smi.protegex.owl.swrl.model.impl.DefaultSWRLBuiltinAtom
setArguments(RDFList) - Method in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLBuiltinAtom
setAssociatedCls(Cls) - Method in class edu.stanford.smi.protegex.owl.ui.widget.MultiWidgetPropertyWidget
setAssociatedFacet(Slot, Facet) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not supported in OWL
setAssociatedFacet(Facet) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeSlot
  Deprecated. no OWL equivalent
setAssociatedSlot(Facet, Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not needed
setAttribute(String, String) - Method in class edu.stanford.smi.protegex.owl.writer.xml.DefaultXMLWriter.XMLElement
setAutomaticallyShowInferredHierarchy(boolean) - Method in class edu.stanford.smi.protegex.owl.inference.util.ReasonerPreferences
setAutoRepairEnabled(boolean) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
setAutoRepairEnabled(boolean) - Method in interface edu.stanford.smi.protegex.owl.testing.OWLTestManager
setAutoSynchronizationEnabled(boolean) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.DefaultProtegeOWLReasoner
setAutoSynchronizationEnabled(boolean) - Method in interface edu.stanford.smi.protegex.owl.inference.protegeowl.ProtegeOWLReasoner
  Deprecated. Depending on the implementation of the ProtegeOWLReasoner, the DIG reasoner may automatically be sunchronized with changes in the Protege-OWL knowledgebase.
setAutoSynchronizationEnabled(boolean) - Method in class edu.stanford.smi.protegex.owl.inference.reasoner.AbstractProtegeReasoner
setAutoSynchronizationEnabled(boolean) - Method in interface edu.stanford.smi.protegex.owl.inference.reasoner.ProtegeReasoner
  Depending on the implementation of the ProtegeOWLReasoner, the DIG reasoner may automatically be sunchronized with changes in the Protege-OWL knowledgebase.
setAutoUpdateFacetValues(boolean) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not supported in OWL
setBody(SWRLAtomList) - Method in class edu.stanford.smi.protegex.owl.swrl.model.impl.DefaultSWRLImp
setBody(SWRLAtomList) - Method in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLImp
setBoolean(String, boolean) - Method in class edu.stanford.smi.protegex.owl.model.project.AbstractSettingsMap
setBoolean(String, Boolean) - Method in class edu.stanford.smi.protegex.owl.model.project.DefaultSettingsMap
setBoolean(String, boolean) - Method in interface edu.stanford.smi.protegex.owl.model.project.SettingsMap
setBoolean(String, Boolean) - Method in interface edu.stanford.smi.protegex.owl.model.project.SettingsMap
setBorder(Border) - Method in class edu.stanford.smi.protegex.owl.ui.widget.MultiWidgetPropertyWidget
setBounds(int, int, int, int) - Method in class edu.stanford.smi.protegex.owl.ui.resourcedisplay.ResourceDisplay
setBuildString(String) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not needed
setBuiltin(SWRLBuiltin) - Method in class edu.stanford.smi.protegex.owl.swrl.model.impl.DefaultSWRLBuiltinAtom
setBuiltin(SWRLBuiltin) - Method in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLBuiltinAtom
setCacheMachine(ServerCacheStateMachine) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
setCallCachingEnabled(boolean) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not needed
setCancelButtonEnabled(boolean) - Method in class edu.stanford.smi.protegex.owl.inference.ui.ReasonerProgressModalDialog
setCardinality(int) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLCardinalityBase
setCardinality(int) - Method in interface edu.stanford.smi.protegex.owl.model.OWLCardinalityBase
  Sets the cardinality value in this restriction.
setCellEditor(CellEditor) - Method in class edu.stanford.smi.protegex.owl.ui.code.SymbolTextArea
  Establishs the reference from the TextField to the CellEditor that owns it.
setCenterComponent(Component) - Method in class edu.stanford.smi.protegex.owl.ui.results.ResultsPanel
  Puts the main component into the center of this.
setChanged(boolean) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not needed
setChangeMonitorEnabled(boolean) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not needed
setCharacterMap(Map) - Static method in class edu.stanford.smi.protegex.owl.model.classparser.compact.CompactParserUtil
setCharacterMap(Map) - Static method in class edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxParserUtil
setClass(RDFSNamedClass) - Method in class edu.stanford.smi.protegex.owl.ui.clsproperties.RDFPropertiesComponent
setClass(RDFSNamedClass) - Method in class edu.stanford.smi.protegex.owl.ui.clsproperties.RDFPropertiesTable
setClass(RDFSNamedClass) - Method in class edu.stanford.smi.protegex.owl.ui.clsproperties.RDFPropertiesTableModel
setClasses(Collection) - Method in class edu.stanford.smi.protegex.owl.ui.individuals.InstancesList
setClassesView(PropertyList, String) - Static method in class edu.stanford.smi.protegex.owl.ui.cls.SwitchClassDefinitionResourceDisplayPlugin
setClassificationStatus(int) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLNamedClass
setClassificationStatus(int) - Method in interface edu.stanford.smi.protegex.owl.model.OWLNamedClass
  Sets the classification status of this.
setClassPredicate(RDFSClass) - Method in class edu.stanford.smi.protegex.owl.swrl.model.impl.DefaultSWRLClassAtom
setClassPredicate(RDFSClass) - Method in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLClassAtom
setCleanDispatchEnabled(boolean) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not needed
setClosed(boolean) - Method in class edu.stanford.smi.protegex.owl.ui.classform.component.property.PropertyFormTable
setCls(OWLNamedClass) - Method in class edu.stanford.smi.protegex.owl.ui.cls.ClassTypeConverterWidget
setCls(OWLNamedClass) - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.DisjointClassesTableModel
setCls(OWLNamedClass) - Method in class edu.stanford.smi.protegex.owl.ui.clsproperties.PropertyRestrictionsTree
setCls(OWLNamedClass) - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTableModel
setCls(OWLNamedClass) - Method in class edu.stanford.smi.protegex.owl.ui.existential.ExistentialAction
setCls(OWLNamedClass) - Method in interface edu.stanford.smi.protegex.owl.ui.existential.ExistentialTreePanel.SuperClsesPanel
setCls(OWLNamedClass) - Method in class edu.stanford.smi.protegex.owl.ui.owltable.AbstractOWLTableModel
setCls(OWLNamedClass) - Method in class edu.stanford.smi.protegex.owl.ui.owltable.OWLTable
setCls(OWLNamedClass) - Method in interface edu.stanford.smi.protegex.owl.ui.owltable.OWLTableModel
setCls(OWLNamedClass) - Method in interface edu.stanford.smi.protegex.owl.ui.subsumption.SubsumptionTreePanel.SuperClsesPanel
setClses(Collection) - Method in class edu.stanford.smi.protegex.owl.ui.individuals.AssertedInstancesListPanel
setColors(boolean, boolean) - Method in class edu.stanford.smi.protegex.owl.ui.components.annotations.AnnotationsTableCellHolder
setComment(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
setComment(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFIndividual
setComment(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
setComment(RDFResource, String) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
setComment(String) - Method in interface edu.stanford.smi.protegex.owl.model.RDFResource
setCommentedOut(RDFSClass, boolean) - Method in class edu.stanford.smi.protegex.owl.model.util.ClassCommenter
setComments(Collection) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
setComments(Collection) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFIndividual
setComments(Collection) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
setComments(RDFResource, Collection) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
setComments(Collection) - Method in interface edu.stanford.smi.protegex.owl.model.RDFResource
setCommonBrowserSlot(OWLModel, Slot) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.OWLUI
setComplement(RDFSClass) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLComplementClass
setComplement(RDFSClass) - Method in interface edu.stanford.smi.protegex.owl.model.OWLComplementClass
setConsistentClassificationStatus(OWLNamedClass) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
setConstraintChecking(OWLModel, boolean) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.OWLUI
setContent(JComponent) - Method in class edu.stanford.smi.protegex.owl.ui.classform.component.FormComponent
setCreate(boolean) - Method in class edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxParser
setCurrentEditorPane(JTextComponent) - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.manchester.SuggestionPopup
setCustomer(Customer) - Method in class edu.stanford.smi.protegex.owlx.examples.javaDemo.model.impl.DefaultPurchase
setCustomer(Customer) - Method in interface edu.stanford.smi.protegex.owlx.examples.javaDemo.model.Purchase
setDataRange(OWLDataRange) - Method in class edu.stanford.smi.protegex.owl.swrl.model.impl.DefaultSWRLDataRangeAtom
setDataRange(OWLDataRange) - Method in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLDataRangeAtom
setDatatype(RDFSDatatype) - Method in class edu.stanford.smi.protegex.owl.ui.properties.range.OWLDataRangeComponent
setDate(RDFSLiteral) - Method in class edu.stanford.smi.protegex.owlx.examples.javaDemo.model.impl.DefaultPurchase
setDate(RDFSLiteral) - Method in interface edu.stanford.smi.protegex.owlx.examples.javaDemo.model.Purchase
setDebugStream(PrintStream) - Method in class edu.stanford.smi.protegex.owl.model.classparser.compact.CompactParserTokenManager
setDebugStream(PrintStream) - Method in class edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxParserTokenManager
setDebugStream(PrintStream) - Method in class edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParserTokenManager
setDefaultAnnotationProperties(Collection) - Method in class edu.stanford.smi.protegex.owl.ui.components.annotations.DefaultAnnotations
setDefaultAnnotationPropertiesInView(Collection) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
setDefaultBrowserSlot(OWLModel, Slot) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.OWLUI
setDefaultClassesView(String) - Static method in class edu.stanford.smi.protegex.owl.ui.cls.SwitchClassDefinitionResourceDisplayPlugin
setDefaultClassView(Class) - Method in interface edu.stanford.smi.protegex.owl.jena.OWLCreateProjectPlugin
setDefaultClassView(Class) - Method in class edu.stanford.smi.protegex.owl.jena.OWLFilesCreateProjectPlugin
setDefaultClassView(Class) - Method in class edu.stanford.smi.protegex.owl.model.factory.AbstractOwlProjectCreator
setDefaultClassView(Class) - Method in class edu.stanford.smi.protegex.owl.storage.ProtegeFromOWLFilesCreateProjectPlugin
setDefaultClsMetaCls(Cls) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not needed
setDefaultDisplay(OWLClassDisplay) - Static method in class edu.stanford.smi.protegex.owl.model.classdisplay.OWLClassDisplayFactory
setDefaultFacetMetaCls(Cls) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not needed
setDefaultNamespace(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractNamespaceManager
setDefaultNamespace(URI) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractNamespaceManager
setDefaultNamespace(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.UnmodifiableNamespaceManager
setDefaultNamespace(URI) - Method in class edu.stanford.smi.protegex.owl.model.impl.UnmodifiableNamespaceManager
setDefaultNamespace(String) - Method in interface edu.stanford.smi.protegex.owl.model.NamespaceMap
setDefaultNamespace(URI) - Method in interface edu.stanford.smi.protegex.owl.model.NamespaceMap
setDefaultNamespace(String) - Method in class edu.stanford.smi.protegex.owl.model.triplestore.impl.TripleStoreImpl
setDefaultNamespace(URI) - Method in class edu.stanford.smi.protegex.owl.model.triplestore.impl.TripleStoreImpl
setDefaultReasonerClass(String) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.ReasonerManager
setDefaultSlotMetaCls(Cls) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not needed
setDefaultValues(Slot, Collection) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not supported in OWL
setDefaultValues(Collection) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeSlot
  Deprecated. no OWL equivalent
setDefinition(RDFSClass) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLNamedClass
setDefinition(RDFSClass) - Method in interface edu.stanford.smi.protegex.owl.model.OWLNamedClass
  Removes all equivalent classes and then adds the given class (as definition).
setDelegate(TripleWriter) - Method in class edu.stanford.smi.protegex.owl.model.triplestore.DelegatingTripleWriter
setDeprecated(boolean) - Method in interface edu.stanford.smi.protegex.owl.model.Deprecatable
setDeprecated(boolean) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
setDeprecated(boolean) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFSNamedClass
SetDeprecatedFalseAction - Class in edu.stanford.smi.protegex.owl.ui.refactoring
  A ResourceAction to set a class or property to deprecated.
SetDeprecatedFalseAction() - Constructor for class edu.stanford.smi.protegex.owl.ui.refactoring.SetDeprecatedFalseAction
SetDeprecatedTrueAction - Class in edu.stanford.smi.protegex.owl.ui.refactoring
  A ResourceAction to set a class or property to deprecated.
SetDeprecatedTrueAction() - Constructor for class edu.stanford.smi.protegex.owl.ui.refactoring.SetDeprecatedTrueAction
setDescription(String) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.AbstractReasonerTask
  Sets the high level task description, notifiying listeners of the change in description.
setDescription(String) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.AbstractReasonerTask
  Sets the high level task description, notifiying listeners of the change in description.
setDescription(String) - Method in class edu.stanford.smi.protegex.owl.inference.ui.ReasonerProgressModalDialog
setDesignTime(boolean) - Method in class edu.stanford.smi.protegex.owl.ui.classform.component.FormComponent
setDirectBrowserSlot(Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeCls
setDirectBrowserSlot(Cls, Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
setDirectBrowserSlotPattern(BrowserSlotPattern) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
setDirectBrowserSlotPattern(BrowserSlotPattern) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeCls
setDirectBrowserSlotPattern(Cls, BrowserSlotPattern) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
setDirectOwnSlotValue(Slot, Object) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeInstance
  Deprecated.
setDirectOwnSlotValues(Frame, Slot, Collection) - Method in class edu.stanford.smi.protegex.owl.model.framestore.DomainUpdateFrameStore
setDirectOwnSlotValues(Frame, Slot, Collection) - Method in class edu.stanford.smi.protegex.owl.model.framestore.DuplicateValuesFrameStore
setDirectOwnSlotValues(Frame, Slot, Collection) - Method in class edu.stanford.smi.protegex.owl.model.framestore.LocalClassificationFrameStore
setDirectOwnSlotValues(Frame, Slot, Collection) - Method in class edu.stanford.smi.protegex.owl.model.framestore.OWLFrameStore
setDirectOwnSlotValues(Frame, Slot, Collection) - Method in class edu.stanford.smi.protegex.owl.model.framestore.RangeUpdateFrameStore
setDirectOwnSlotValues(Frame, Slot, Collection) - Method in class edu.stanford.smi.protegex.owl.model.framestore.TypeUpdateFrameStore
setDirectOwnSlotValues(Frame, Slot, Collection) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
setDirectOwnSlotValues(Slot, Collection) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeInstance
  Deprecated.
setDirectOwnSlotValues(Frame, Slot, Collection) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
setDirectTemplateFacetValues(Cls, Slot, Facet, Collection) - Method in class edu.stanford.smi.protegex.owl.model.framestore.FacetUpdateFrameStore
setDirectTemplateSlotValues(Cls, Slot, Collection) - Method in class edu.stanford.smi.protegex.owl.model.framestore.FacetUpdateFrameStore
setDirectType(Instance, Cls) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
setDirectType(Cls) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeInstance
  Deprecated.
setDirectType(Instance, Cls) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
setDirectType(Instance, Instance) - Method in class edu.stanford.smi.protegex.owl.storage.KnowledgeBaseCopier
setDirectType(Instance, Instance) - Method in class edu.stanford.smi.protegex.owl.storage.ProtegeSaver
setDirectTypeOfSubclasses(Cls) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeCls
  Deprecated. not needed
setDirectTypeOfSubclasses(Cls, Cls) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not needed
setDirectTypeOfSubslots(Slot, Cls) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not needed
setDirectTypeOfSubslots(Cls) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeSlot
  Deprecated. not needed
setDirectTypes(Collection) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeInstance
  Deprecated.
setDirectTypes(Instance, Collection) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
setDispatchEventsEnabled(boolean) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
setDisplayParent(Cls) - Method in class edu.stanford.smi.protegex.owl.ui.cls.OWLSubclassPane
setDisplayParent(Cls) - Method in class edu.stanford.smi.protegex.owl.ui.existential.ExistentialTreePanel
setDisplayParent(RDFSClass) - Method in class edu.stanford.smi.protegex.owl.ui.explorer.ExplorerTreePanel
setDisplayParent(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.ui.properties.OWLSubpropertyPane
setDisplayParent(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.ui.properties.OWLSuperpropertiesPanel
setDisplayParent(Cls) - Method in class edu.stanford.smi.protegex.owl.ui.subsumption.SubsumptionTreePanel
setDisplayRestrictions(boolean) - Method in class edu.stanford.smi.protegex.owl.ui.clsproperties.PropertyRestrictionsTreeWidget
setDistinctMembers(List) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLAllDifferent
setDistinctMembers(List) - Method in interface edu.stanford.smi.protegex.owl.model.OWLAllDifferent
setDocumentation(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
setDocumentation(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFIndividual
setDocumentation(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
setDocumentation(Instance, Collection) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
setDocumentation(String) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeInstance
  Deprecated.
setDocumentation(Collection) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeInstance
  Deprecated.
setDocumentation(Frame, String) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
setDocumentation(Frame, Collection) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
setDocumentation(String) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeSlot
  Deprecated.
setDomain(RDFSClass) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
setDomain(RDFSClass) - Method in interface edu.stanford.smi.protegex.owl.model.RDFProperty
  Sets the value of rdfs:domain to the given class.
setDomainDefined(boolean) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
setDomainDefined(boolean) - Method in interface edu.stanford.smi.protegex.owl.model.RDFProperty
  Specifies whether the domain of this property is defined or not.
setDomains(Collection) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
setDomains(Collection) - Method in interface edu.stanford.smi.protegex.owl.model.RDFProperty
  Sets the values of the rdfs:domain property at this.
setDragAndDropSupported(OWLModel, boolean) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.OWLUI
setDriver(String) - Method in class edu.stanford.smi.protegex.owl.database.CreateOWLDatabaseProjectPlugin
setDriver(String) - Method in class edu.stanford.smi.protegex.owl.database.creator.AbstractOwlDatabaseCreator
setDublinCoreRedirectedToDLVersion(RepositoryManager, boolean) - Static method in class edu.stanford.smi.protegex.owl.repository.util.RepositoryUtil
setDublinCoreRedirectToDLVersion(boolean) - Method in class edu.stanford.smi.protegex.owl.storage.ProtegeFromOWLFilesCreateProjectPlugin
setEditable(boolean) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeInstance
setEditable(boolean) - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.DisjointClassesWidget
setEditable(boolean) - Method in class edu.stanford.smi.protegex.owl.ui.components.AbstractPropertyValuesComponent
setEditable(boolean) - Method in class edu.stanford.smi.protegex.owl.ui.metadata.RDFResourceNameWidget
  Deprecated.
setEditable(boolean) - Method in class edu.stanford.smi.protegex.owl.ui.properties.domain.OWLDomainWidget
setEditable(boolean) - Method in class edu.stanford.smi.protegex.owl.ui.properties.OWLInversePropertyWidget
setEditable(boolean) - Method in class edu.stanford.smi.protegex.owl.ui.properties.range.FacetsPanel
setEditable(boolean) - Method in class edu.stanford.smi.protegex.owl.ui.properties.range.NumericFacetsPanel
setEditable(boolean) - Method in class edu.stanford.smi.protegex.owl.ui.properties.range.OWLDataRangeComponent
setEditable(boolean) - Method in class edu.stanford.smi.protegex.owl.ui.properties.range.OWLRangeWidget
setEditable(boolean) - Method in class edu.stanford.smi.protegex.owl.ui.properties.range.StringFacetsPanel
setEditable(boolean) - Method in class edu.stanford.smi.protegex.owl.ui.properties.types.AbstractPropertyTypesWidget
setEditable(boolean) - Method in class edu.stanford.smi.protegex.owl.ui.properties.types.RDFPropertyTypesWidget
setEditable(boolean) - Method in class edu.stanford.smi.protegex.owl.ui.resourcedisplay.InstanceNameComponent
setEditable(boolean) - Method in class edu.stanford.smi.protegex.owl.ui.widget.AbstractPropertyValuesWidget
setEditable(boolean) - Method in class edu.stanford.smi.protegex.owl.ui.widget.MultiWidgetPropertyWidget
setEditable(boolean) - Method in class edu.stanford.smi.protegex.owl.ui.widget.OWLTimeWidget
setEditedValue(OWLDatatypeProperty, String, String, Object) - Method in class edu.stanford.smi.protegex.owl.ui.metadata.AnnotationTextAreaWidget
setElement(Element) - Method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DefaultDIGQueryResponse
setEnabled(boolean) - Method in class edu.stanford.smi.protegex.owl.swrl.ui.code.SWRLSymbolPanel
setEnabled(boolean) - Method in class edu.stanford.smi.protegex.owl.swrl.ui.code.SWRLTextArea
setEnabled(boolean) - Method in class edu.stanford.smi.protegex.owl.ui.code.OWLSymbolPanel
setEnabled(boolean) - Method in class edu.stanford.smi.protegex.owl.ui.code.SymbolPanel
setEnabled(boolean) - Method in class edu.stanford.smi.protegex.owl.ui.components.annotations.AnnotationsComponent
setEnabled(boolean) - Method in class edu.stanford.smi.protegex.owl.ui.components.triples.AbstractTriplesComponent
setEnabled(boolean) - Method in class edu.stanford.smi.protegex.owl.ui.components.triples.TriplesComponent
setEnabled(boolean) - Method in class edu.stanford.smi.protegex.owl.ui.importstree.ImportsTreePanel
setEnabled(boolean) - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.imports.ImportsPanel
setEnabled(boolean) - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.OntologyURIWidget
setEnabled(boolean) - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.OWLMetadataTab
setEnabled(boolean) - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.OWLNamespacesPanel
setEnabled(boolean) - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.OWLNamespacesWidget
setEnabled(boolean) - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.prefixes.PrefixesPanel
setEnabled(boolean) - Method in class edu.stanford.smi.protegex.owl.ui.properties.domain.OWLDomainWidget
setEnabled(boolean) - Method in class edu.stanford.smi.protegex.owl.ui.properties.OWLInversePropertyWidget
setEnabled(boolean) - Method in class edu.stanford.smi.protegex.owl.ui.properties.OWLPropertiesTab
setEnabled(boolean) - Method in class edu.stanford.smi.protegex.owl.ui.properties.OWLPropertyHierarchiesPanel
setEnabled(boolean) - Method in class edu.stanford.smi.protegex.owl.ui.properties.OWLPropertyHierarchyPanel
setEnabled(boolean) - Method in class edu.stanford.smi.protegex.owl.ui.properties.OWLSubpropertyPane
setEnabled(boolean) - Method in class edu.stanford.smi.protegex.owl.ui.properties.OWLSuperpropertiesPanel
setEnabled(boolean) - Method in class edu.stanford.smi.protegex.owl.ui.properties.range.OWLDataRangeComponent
setEnabled(boolean) - Method in class edu.stanford.smi.protegex.owl.ui.properties.range.OWLRangeWidget
setEnabled(boolean) - Method in class edu.stanford.smi.protegex.owl.ui.properties.range.UnionRangeClassesComponent
setEnabled(boolean) - Method in class edu.stanford.smi.protegex.owl.ui.properties.types.AbstractPropertyTypesWidget
setEnabled(boolean) - Method in class edu.stanford.smi.protegex.owl.ui.resourcedisplay.InstanceNameComponent
setEnabled(boolean) - Method in class edu.stanford.smi.protegex.owl.ui.resourcedisplay.ResourceDisplay
setEnabled(boolean) - Method in class edu.stanford.smi.protegex.owl.ui.widget.HeaderWidget
setEnabled(boolean) - Method in class edu.stanford.smi.protegex.owl.ui.widget.OWLDateWidget
setEnabled(boolean) - Method in class edu.stanford.smi.protegex.owl.ui.widget.TimePanel
setEncoding(String) - Method in class edu.stanford.smi.protegex.owl.writer.xml.DefaultXMLWriter
setEncoding(String) - Method in interface edu.stanford.smi.protegex.owl.writer.xml.XMLWriter
  Sets the encoding for the document that the rdfwriter produces.
setEquivalentProperties(Collection) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLProperty
setEquivalentProperties(Collection) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
setEquivalentProperties(Collection) - Method in interface edu.stanford.smi.protegex.owl.model.RDFProperty
  Sets the equivalent properties of this.
setErrorFlag(boolean) - Method in interface edu.stanford.smi.protegex.owl.ui.code.SymbolErrorDisplay
setErrorFlag(boolean) - Method in class edu.stanford.smi.protegex.owl.ui.code.SymbolPanel
setErrorLevel(ARP) - Method in class edu.stanford.smi.protegex.owl.jena.parser.ProtegeOWLParser
setExclusive(boolean) - Method in class edu.stanford.smi.protegex.owl.ui.properties.range.ExInclusiveToggleAction
setExpandedClass(RDFSNamedClass, boolean) - Method in class edu.stanford.smi.protegex.owl.ui.cls.AssertedClassesPanel
setExpandedCls(Cls, boolean) - Method in class edu.stanford.smi.protegex.owl.ui.cls.AssertedClassesPanel
  Deprecated.
setExpandedCls(Cls, boolean) - Method in class edu.stanford.smi.protegex.owl.ui.cls.OWLSubclassPane
setExpandedCls(Cls, boolean) - Method in class edu.stanford.smi.protegex.owl.ui.existential.ExistentialTreePanel
setExpandedCls(Cls, boolean) - Method in class edu.stanford.smi.protegex.owl.ui.subsumption.SubsumptionTreePanel
setExpandedProperty(RDFProperty, boolean) - Method in class edu.stanford.smi.protegex.owl.ui.properties.OWLSubpropertyPane
setExpandShortNameInMethods(boolean) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
setExpandShortNameInMethods(boolean) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
setExpression(String) - Method in class edu.stanford.smi.protegex.owl.swrl.model.impl.DefaultSWRLImp
setExpression(String) - Method in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLImp
  Tries to parse the given text to create head and body of this Imp.
setExternalResourcesSupported(OWLModel, boolean) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.OWLUI
setFacetCheckingEnabled(boolean) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not needed
setFactoryClassName(String) - Method in interface edu.stanford.smi.protegex.owl.javacode.EditableJavaCodeGeneratorOptions
setFactoryClassName(String) - Method in class edu.stanford.smi.protegex.owl.javacode.ProjectBasedJavaCodeGeneratorOptions
setFile(String) - Method in class edu.stanford.smi.protegex.owl.jena.OWLFilesCreateProjectPlugin
setFile(String) - Method in interface edu.stanford.smi.protegex.owl.jena.OWLFilesPlugin
setFile(String) - Method in class edu.stanford.smi.protegex.owl.storage.ProtegeFromOWLFilesCreateProjectPlugin
setFileName(String) - Method in class edu.stanford.smi.protegex.owl.ui.jena.JenaSchemagenPanel
setFileToDatabase(boolean) - Method in class edu.stanford.smi.protegex.owl.database.OWLDatabaseWizardPageExistingSources
setFiller(RDFResource) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLQuantifierRestriction
setFiller(RDFResource) - Method in interface edu.stanford.smi.protegex.owl.model.OWLQuantifierRestriction
  Sets the filler of this restriction.
setFillerText(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLCardinalityBase
setFillerText(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLQuantifierRestriction
setFillerText(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLHasValue
setFillerText(String) - Method in interface edu.stanford.smi.protegex.owl.model.OWLRestriction
  Sets the filler from a (valid) textual expression.
setFinderComponent(JComponent) - Method in class edu.stanford.smi.protegex.owl.ui.cls.AssertedClassesPanel
setFinderComponent(JComponent) - Method in class edu.stanford.smi.protegex.owl.ui.cls.OWLSubclassPane
setFinderComponent(JComponent) - Method in class edu.stanford.smi.protegex.owl.ui.existential.ExistentialTreePanel
setFinderComponent(JComponent) - Method in class edu.stanford.smi.protegex.owl.ui.explorer.ExplorerTreePanel
setFinderComponent(JComponent) - Method in class edu.stanford.smi.protegex.owl.ui.subsumption.SubsumptionTreePanel
setFirst(Object) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFList
setFirst(Object) - Method in interface edu.stanford.smi.protegex.owl.model.RDFList
setFirstName(String) - Method in interface edu.stanford.smi.protegex.owlx.examples.javaDemo.model.Customer_
setFirstName(String) - Method in class edu.stanford.smi.protegex.owlx.examples.javaDemo.model.impl.DefaultCustomer_
setFocusedFrame(Frame) - Method in class edu.stanford.smi.protegex.owl.ui.ResourceRenderer
setForceReadOnly(boolean) - Method in class edu.stanford.smi.protegex.owl.repository.impl.AbstractLocalRepository
setFrameFactory(OWLJavaFactory) - Static method in class edu.stanford.smi.protegex.owl.model.framestore.OWLFrameFactoryInvocationHandler
  Deprecated. Sets the FrameFactory that shall be used for frame generation in the most recently created OWLFrameFactoryInvocationHandler.
setFrameFactory(FrameFactory) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
setFrameNamePrefix(String) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not needed
setFrameNameValidator(FrameNameValidator) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not needed
setFTPRepositoryPasswordProvider(FTPRepositoryPasswordProvider) - Static method in class edu.stanford.smi.protegex.owl.repository.impl.FTPRepository
setFunctional(boolean) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
setFunctional(boolean) - Method in interface edu.stanford.smi.protegex.owl.model.RDFProperty
  Adds or removes owl:FunctionalProperty to/from the rdf:types of this.
setGenerateDeletingFrameEventsEnabled(boolean) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not needed
setGenerateEventsEnabled(boolean) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
setHasValue(Object) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLHasValue
setHasValue(Object) - Method in interface edu.stanford.smi.protegex.owl.model.OWLHasValue
  Sets the owl:hasValue of this restriction.
setHead(SWRLAtomList) - Method in class edu.stanford.smi.protegex.owl.swrl.model.impl.DefaultSWRLImp
setHead(SWRLAtomList) - Method in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLImp
setHelpText(String, String) - Method in class edu.stanford.smi.protegex.owl.ui.wizard.OWLWizardPage
setHierarchiesPanel(HierarchiesPanel) - Method in class edu.stanford.smi.protegex.owl.ui.cls.OWLClassesTab
setHierarchyManager(HierarchyManager) - Method in class edu.stanford.smi.protegex.owl.ui.cls.OWLSubclassPane
setHierarchyTreeRenderer(FrameRenderer) - Method in class edu.stanford.smi.protegex.owl.ui.properties.OWLPropertyHierarchiesPanel
setHomeTripleStore(RDFResource, TripleStore) - Method in class edu.stanford.smi.protegex.owl.model.triplestore.impl.TripleStoreModelImpl
setHomeTripleStore(RDFResource, TripleStore) - Method in interface edu.stanford.smi.protegex.owl.model.triplestore.TripleStoreModel
  Moves a given RDFResource into another "home" TripleStore.
setHomeTripleStore(RDFResource, TripleStore) - Method in class edu.stanford.smi.protegex.owl.server.triplestore.ClientTripleStoreModel
setIcon(Class, String) - Method in interface edu.stanford.smi.protegex.owl.model.ProgressManager
  Specifies an (optional) icon that can be displayed alongside with the status text.
setIconFactory(IconFactory) - Static method in class edu.stanford.smi.protegex.owl.ui.ProtegeUI
setIgnoreNecessaryConditionsOnDefinedClasses(boolean) - Method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DIGTranslatorPreferences
setImp(int, SWRLImp) - Method in class edu.stanford.smi.protegex.owl.swrl.ui.table.SWRLTableModel
setImporting(boolean) - Method in class edu.stanford.smi.protegex.owl.jena.parser.ProtegeOWLParser
  Imports
setIncluded(boolean) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeInstance
  Deprecated. this will be refactored into multiple imports
setIndenting(boolean) - Method in class edu.stanford.smi.protegex.owl.writer.xml.XMLWriterPreferences
setIndentSize(int) - Method in class edu.stanford.smi.protegex.owl.writer.xml.XMLWriterPreferences
setIndeterminate(Task, boolean) - Method in class edu.stanford.smi.protegex.owl.model.DefaultTaskManager
setIndeterminate(Task, boolean) - Method in interface edu.stanford.smi.protegex.owl.model.TaskManager
setInferredClsesVisible(boolean) - Method in class edu.stanford.smi.protegex.owl.ui.cls.OWLClassesTab
setInferredMode(boolean) - Method in class edu.stanford.smi.protegex.owl.ui.classform.form.ClassForm
setInferredMode(boolean) - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsWidget
setInferredMode(boolean) - Method in class edu.stanford.smi.protegex.owl.ui.resourcedisplay.ResourceDisplay
setInferredMode(boolean) - Method in interface edu.stanford.smi.protegex.owl.ui.widget.InferredModeWidget
  Sets the inferred mode.
setInferredTypes(Collection) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
setInferredTypes(Collection) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFIndividual
setInferredTypes(Collection) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
setInferredTypes(RDFResource, Collection) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
setInferredTypes(Collection) - Method in interface edu.stanford.smi.protegex.owl.model.RDFResource
setInHead(boolean) - Method in class edu.stanford.smi.protegex.owl.swrl.model.impl.DefaultSWRLAtomList
setInHead(boolean) - Method in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLAtomList
setInitialOwnSlotValues(Instance) - Method in class edu.stanford.smi.protegex.owl.storage.KnowledgeBaseCopier
  Can be overloaded to force the assignment of selected own slot values immediately after the instance has been created.
setInitialOwnSlotValues(Instance) - Method in class edu.stanford.smi.protegex.owl.storage.OWL2OWLCopier
  Makes sure that Restrictions are immediately initialized by their facet overrides, so that the corresponding OntClass can be generated.
setInitialOwnSlotValues(Instance) - Method in class edu.stanford.smi.protegex.owl.storage.ProtegeSaver
setInitialSelection() - Method in class edu.stanford.smi.protegex.owl.ui.cls.OWLClassesTab
setInstance(Instance) - Method in class edu.stanford.smi.protegex.owl.swrl.ui.widget.SWRLRuleSlotWidget
setInstance(Instance) - Method in class edu.stanford.smi.protegex.owl.ui.cls.ClassTypeConverterWidget
setInstance(Instance) - Method in class edu.stanford.smi.protegex.owl.ui.cls.SwitchableClassDefinitionWidget
setInstance(Instance) - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.ClassDescriptionWidget
setInstance(Instance) - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.PropertiesSuperclassesWidget
setInstance(Instance) - Method in class edu.stanford.smi.protegex.owl.ui.clsproperties.PropertyRestrictionsTreeWidget
setInstance(Instance) - Method in class edu.stanford.smi.protegex.owl.ui.conditions.AbstractConditionsWidget
setInstance(Instance) - Method in class edu.stanford.smi.protegex.owl.ui.conditions.AssertedConditionsWidget
setInstance(Instance) - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsWidget
setInstance(Instance) - Method in class edu.stanford.smi.protegex.owl.ui.metadata.AnnotationTextAreaWidget
setInstance(Instance) - Method in class edu.stanford.smi.protegex.owl.ui.metadata.RDFResourceNameWidget
  Deprecated.
setInstance(Instance) - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.OntologyURIWidget
setInstance(Instance) - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.OWLNamespacesWidget
setInstance(Instance) - Method in class edu.stanford.smi.protegex.owl.ui.properties.domain.OWLDomainWidget
setInstance(Instance) - Method in class edu.stanford.smi.protegex.owl.ui.properties.OWLInversePropertyWidget
setInstance(Instance) - Method in class edu.stanford.smi.protegex.owl.ui.properties.range.OWLRangeWidget
setInstance(Instance) - Method in class edu.stanford.smi.protegex.owl.ui.resourcedisplay.InstanceNameComponent
setInstance(Instance) - Method in class edu.stanford.smi.protegex.owl.ui.resourcedisplay.InstanceNameEditor
setInstance(Instance) - Method in class edu.stanford.smi.protegex.owl.ui.resourcedisplay.ResourceDisplay
setInstance(Instance, Cls) - Method in class edu.stanford.smi.protegex.owl.ui.resourcedisplay.ResourceDisplay
setInstance(Instance) - Method in class edu.stanford.smi.protegex.owl.ui.widget.AbstractPropertyValuesWidget
setInstance(Instance) - Method in class edu.stanford.smi.protegex.owl.ui.widget.ClassFormWidget
setInstance(Instance) - Method in class edu.stanford.smi.protegex.owl.ui.widget.HeaderWidget
setInstance(Instance) - Method in class edu.stanford.smi.protegex.owl.ui.widget.MultiWidgetPropertyWidget
  Overloaded to forward the method call into all nested components.
setInstance(Instance) - Method in class edu.stanford.smi.protegex.owl.ui.widget.OWLDateWidget
setInstance(Instance) - Method in class edu.stanford.smi.protegex.owl.ui.widget.OWLTimeWidget
setInstance(Instance) - Method in class edu.stanford.smi.protegex.owl.ui.widget.RDFPropertiesWidget
setInstanceType(Instance, Cls, TripleStore) - Static method in class edu.stanford.smi.protegex.owl.jena.parser.FrameCreatorUtility
setInteger(String, int) - Method in class edu.stanford.smi.protegex.owl.model.project.AbstractSettingsMap
setInteger(String, Integer) - Method in class edu.stanford.smi.protegex.owl.model.project.DefaultSettingsMap
setInteger(String, int) - Method in interface edu.stanford.smi.protegex.owl.model.project.SettingsMap
setInteger(String, Integer) - Method in interface edu.stanford.smi.protegex.owl.model.project.SettingsMap
setInverseFunctional(boolean) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLProperty
setInverseFunctional(boolean) - Method in interface edu.stanford.smi.protegex.owl.model.OWLProperty
setInverseProperty(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
setInverseProperty(RDFProperty) - Method in interface edu.stanford.smi.protegex.owl.model.RDFProperty
  Sets the inverse property of this.
setInverseSlot(Slot, Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
setInverseSlot(Slot) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeSlot
  Deprecated.
setIsAllDifferentItemSelected(boolean) - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.alldifferent.AllDifferentEditorPanel
setItems(Collection<FindUsageTableItem>) - Method in class edu.stanford.smi.protegex.owl.ui.search.FindUsageTableModel
setItems(Collection) - Method in class edu.stanford.smi.protegex.owl.ui.testing.OWLTestResultsTableModel
setJavaC(String) - Method in class edu.stanford.smi.protegex.owl.ui.menu.code.KazukiPanel
setJournalingEnabled(boolean) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not needed
setKnowledgeBase(OWLModel) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.DefaultProtegeOWLReasoner
setLabel(String) - Method in class edu.stanford.smi.protegex.owl.ui.widget.ModalProgressBarDialog
setLang(String) - Method in class edu.stanford.smi.protegex.owl.jena.creator.OwlProjectFromUriCreator
setLanguage(String) - Method in class edu.stanford.smi.protegex.owl.jena.OWLFilesCreateProjectPlugin
setLanguage(String) - Method in interface edu.stanford.smi.protegex.owl.jena.OWLFilesPlugin
setLanguage(String) - Method in class edu.stanford.smi.protegex.owl.storage.ProtegeFromOWLFilesCreateProjectPlugin
setLastClassificationTime() - Method in class edu.stanford.smi.protegex.owl.inference.util.ReasonerUtil
setLastName(String) - Method in interface edu.stanford.smi.protegex.owlx.examples.javaDemo.model.Customer_
setLastName(String) - Method in class edu.stanford.smi.protegex.owlx.examples.javaDemo.model.impl.DefaultCustomer_
setLength(RDFSDatatype, int) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFSDatatypeFactory
setLength(RDFSDatatype, int) - Method in interface edu.stanford.smi.protegex.owl.model.RDFSDatatypeFactory
setLoadDefaults(boolean) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
setLocalFile(File) - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.imports.emptyimport.EmptyImportWizard
setLogOutputStream(OutputStream) - Method in class edu.stanford.smi.protegex.owl.inference.dig.reasoner.DIGReasonerPreferences
  Sets the output stream used for logging.
setLowerCase(boolean) - Static method in class edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParserUtil
setMainSplitPane(JSplitPane) - Method in class edu.stanford.smi.protegex.owl.ui.cls.OWLClassesTab
setMainText(String) - Method in class edu.stanford.smi.protegex.owl.ui.ResourceRenderer
setMainText(String) - Method in class edu.stanford.smi.protegex.owl.ui.ResourceRendererWithBrowserText
setMaxExclusive(RDFSDatatype, RDFSLiteral) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFSDatatypeFactory
setMaxExclusive(RDFSDatatype, RDFSLiteral) - Method in interface edu.stanford.smi.protegex.owl.model.RDFSDatatypeFactory
setMaximumCardinality(Slot, int) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
setMaximumCardinality(int) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeSlot
  Deprecated.
setMaximumValue(Slot, Number) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not supported in OWL
setMaximumValue(Number) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeSlot
  Deprecated. no OWL equivalent
setMaxInclusive(RDFSDatatype, RDFSLiteral) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFSDatatypeFactory
setMaxInclusive(RDFSDatatype, RDFSLiteral) - Method in interface edu.stanford.smi.protegex.owl.model.RDFSDatatypeFactory
setMaxLength(RDFSDatatype, int) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFSDatatypeFactory
setMaxLength(RDFSDatatype, int) - Method in interface edu.stanford.smi.protegex.owl.model.RDFSDatatypeFactory
setMergeImportMode(boolean) - Method in class edu.stanford.smi.protegex.owl.database.CreateOWLDatabaseFromFileProjectPlugin
setMergeImportMode(boolean) - Method in class edu.stanford.smi.protegex.owl.database.creator.OwlDatabaseFromFileCreator
setMergeImportMode(boolean) - Method in class edu.stanford.smi.protegex.owl.jena.creator.OwlProjectFromUriCreator
setMergingImportMode(boolean) - Static method in class edu.stanford.smi.protegex.owl.jena.JenaKnowledgeBaseFactory
setMergingImportMode(boolean) - Method in class edu.stanford.smi.protegex.owl.jena.parser.ProtegeOWLParser
setMessage(String) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.AbstractReasonerTask
  Sets the task message, notifying any listeners of the change in message.
setMessage(String) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.AbstractReasonerTask
  Sets the task message, notifying any listeners of the change in message.
setMessage(String) - Method in class edu.stanford.smi.protegex.owl.inference.ui.ReasonerProgressModalDialog
setMessage(String) - Method in class edu.stanford.smi.protegex.owl.model.AbstractTask
setMessage(Task, String) - Method in class edu.stanford.smi.protegex.owl.model.DefaultTaskManager
setMessage(Task, String) - Method in class edu.stanford.smi.protegex.owl.model.impl.NoopProgressDisplay
setMessage(Task, String) - Method in interface edu.stanford.smi.protegex.owl.model.TaskManager
setMessage(Task, String) - Method in interface edu.stanford.smi.protegex.owl.model.TaskProgressDisplay
  Sets the message that will be displayed to the user.
setMessage(Task, String) - Method in class edu.stanford.smi.protegex.owl.ui.ProgressDisplayDialog
setMinExclusive(RDFSDatatype, RDFSLiteral) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFSDatatypeFactory
setMinExclusive(RDFSDatatype, RDFSLiteral) - Method in interface edu.stanford.smi.protegex.owl.model.RDFSDatatypeFactory
setMinimumCardinality(Slot, int) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not supported in OWL
setMinimumCardinality(int) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeSlot
  Deprecated. no OWL equivalent
setMinimumValue(Slot, Number) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not supported in OWL
setMinimumValue(Number) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeSlot
  Deprecated. no OWL equivalent
setMinInclusive(RDFSDatatype, RDFSLiteral) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFSDatatypeFactory
setMinInclusive(RDFSDatatype, RDFSLiteral) - Method in interface edu.stanford.smi.protegex.owl.model.RDFSDatatypeFactory
setMinLength(RDFSDatatype, int) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFSDatatypeFactory
setMinLength(RDFSDatatype, int) - Method in interface edu.stanford.smi.protegex.owl.model.RDFSDatatypeFactory
setModalDialogFactory(ModalDialogFactory) - Static method in class edu.stanford.smi.protegex.owl.ui.ProtegeUI
setMode(boolean, boolean) - Method in class edu.stanford.smi.protegex.owl.ui.resourcedisplay.ResourceDisplay
setModel(TableModel) - Method in class edu.stanford.smi.protegex.owl.ui.owltable.SymbolTable
setModifiable(String, boolean) - Method in class edu.stanford.smi.protegex.owl.model.impl.ImportingOwlNamespaceManager
setModifiable(String, boolean) - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLNamespaceManager
setModifiable(String, boolean) - Method in class edu.stanford.smi.protegex.owl.model.impl.UnmodifiableNamespaceManager
setModifiable(String, boolean) - Method in interface edu.stanford.smi.protegex.owl.model.NamespaceManager
setName(String) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not needed
setName(String) - Method in class edu.stanford.smi.protegex.owl.model.triplestore.impl.TripleStoreImpl
setName(String) - Method in interface edu.stanford.smi.protegex.owl.model.triplestore.TripleStore
setNamedClass(OWLNamedClass) - Method in class edu.stanford.smi.protegex.owl.ui.classform.component.FormComponent
  Propagates the currently edited class of the form into this FormComponent.
setNamedClass(OWLNamedClass) - Method in class edu.stanford.smi.protegex.owl.ui.classform.component.property.PropertyFormComponent
setNamedClass(OWLNamedClass) - Method in class edu.stanford.smi.protegex.owl.ui.classform.form.ClassForm
  Sets the class that is currently displayed.
setNestedHierarchy(Hierarchy) - Method in class edu.stanford.smi.protegex.owl.ui.cls.HierarchyPanel
setNextFrameNumber(int) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not needed
setNsPrefix(String, String) - Method in class edu.stanford.smi.protegex.owl.jena.graph.ProtegePrefixMapping
setNsPrefixes(PrefixMapping) - Method in class edu.stanford.smi.protegex.owl.jena.graph.ProtegePrefixMapping
setNsPrefixes(Map) - Method in class edu.stanford.smi.protegex.owl.jena.graph.ProtegePrefixMapping
setOKButtonEnabled(boolean) - Method in class edu.stanford.smi.protegex.owl.inference.ui.ReasonerProgressModalDialog
setOneOf(Collection) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLEnumeratedClass
setOneOf(Collection) - Method in interface edu.stanford.smi.protegex.owl.model.OWLEnumeratedClass
  Sets the values of the owl:oneOf property at this.
setOneOfValues(Collection) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLEnumeratedClass
setOneOfValues(Collection) - Method in interface edu.stanford.smi.protegex.owl.model.OWLEnumeratedClass
  Deprecated. use setOneOf instead
setOnProperty(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLRestriction
setOnProperty(RDFProperty) - Method in interface edu.stanford.smi.protegex.owl.model.OWLRestriction
  Sets the restricted property at this restriction.
setOnProperty(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.ui.restrictions.FillerTextArea
setOntology(OWLOntology) - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.OWLMetadataTab
setOntologyFileURI(String) - Method in class edu.stanford.smi.protegex.owl.database.CreateOWLDatabaseFromFileProjectPlugin
  Deprecated. Use `CreateOWLDatabaseFromFileProjectPlugin.setOntologyInputSource(URI)`
setOntologyInputSource(URI) - Method in class edu.stanford.smi.protegex.owl.database.CreateOWLDatabaseFromFileProjectPlugin
setOntologyInstance(OWLOntology) - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.OWLMetadataTab
  Deprecated.
setOntologyName(String) - Method in class edu.stanford.smi.protegex.owl.database.CreateOWLDatabaseProjectPlugin
setOntologyName(String) - Method in class edu.stanford.smi.protegex.owl.database.creator.OwlDatabaseCreator
setOntologyName(String) - Method in interface edu.stanford.smi.protegex.owl.database.OWLDatabasePlugin
setOntologyName(String) - Method in class edu.stanford.smi.protegex.owl.jena.creator.NewOwlProjectCreator
setOntologyName(String) - Method in interface edu.stanford.smi.protegex.owl.jena.OWLCreateProjectPlugin
setOntologyName(String) - Method in class edu.stanford.smi.protegex.owl.jena.OWLFilesCreateProjectPlugin
setOntologyName(String, String) - Static method in class edu.stanford.smi.protegex.owl.jena.parser.OWLImportsCache
setOntologyName(String) - Method in class edu.stanford.smi.protegex.owl.storage.ProtegeFromOWLFilesCreateProjectPlugin
setOntologySource(String) - Method in class edu.stanford.smi.protegex.owl.database.creator.OwlDatabaseFromFileCreator
setOntologyUri(String) - Method in class edu.stanford.smi.protegex.owl.jena.creator.OwlProjectFromUriCreator
setOntologyURI(URI) - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.imports.emptyimport.EmptyImportWizard
setOntologyURI(URI) - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.imports.wizard.AbstractImportEntry
setOntPolicyFilePath(Project, String) - Static method in class edu.stanford.smi.protegex.owl.jena.Jena
  Deprecated.
setOperands(Collection) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLComplementClass
  Overloaded to throw an IllegalArgumentException if the number of operands is greater than 1 (there can be only one complement).
setOriginalXMLBase(String) - Method in class edu.stanford.smi.protegex.owl.model.triplestore.impl.TripleStoreImpl
setOriginalXMLBase(String) - Method in interface edu.stanford.smi.protegex.owl.model.triplestore.TripleStore
setOutputFolder(File) - Method in interface edu.stanford.smi.protegex.owl.emf.EditableEMFGeneratorOptions
setOutputFolder(File) - Method in class edu.stanford.smi.protegex.owl.emf.ProjectBasedEMFGeneratorOptions
setOutputFolder(File) - Method in interface edu.stanford.smi.protegex.owl.javacode.EditableJavaCodeGeneratorOptions
setOutputFolder(File) - Method in class edu.stanford.smi.protegex.owl.javacode.ProjectBasedJavaCodeGeneratorOptions
setOverwriteMode(boolean) - Method in class edu.stanford.smi.protegex.owl.ui.menu.code.EMFPanel
setOverwriteMode(boolean) - Method in class edu.stanford.smi.protegex.owl.ui.menu.code.KazukiPanel
setOWLClassDisplay(OWLClassDisplay) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
setOWLClassDisplay(OWLClassDisplay) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Sets the OWLClassDisplay to change the default display of classes.
setOWLFileLanguage(PropertyList, String) - Static method in class edu.stanford.smi.protegex.owl.jena.JenaKnowledgeBaseFactory
setOWLFileName(PropertyList, String) - Static method in class edu.stanford.smi.protegex.owl.jena.JenaKnowledgeBaseFactory
setOwlFrameStoresEnabled(boolean) - Method in class edu.stanford.smi.protegex.owl.model.framestore.OWLFrameStoreManager
setOWLJavaFactory(OWLJavaFactory) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
setOWLJavaFactory(OWLJavaFactory) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Sets the OWLJavaFactory for this OWLModel.
setOWLModel(OWLModel) - Method in class edu.stanford.smi.protegex.owl.inference.reasoner.AbstractProtegeReasoner
setOWLModel(OWLModel) - Method in interface edu.stanford.smi.protegex.owl.inference.reasoner.ProtegeReasoner
  Sets the OWL model that will be attached to this reasoner.
setOWLModel(OWLModel) - Method in class edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxParserTokenManager
setOWLModel(OWLModel) - Method in class edu.stanford.smi.protegex.owl.swrl.P3SWRLTabPluginRegistrationRecord
setOWLProject(OWLProject) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
setOWLProject(OWLProject) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Sets the associated OWLProject.
setOWLTestGroupEnabled(String, boolean) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
setOWLTestGroupEnabled(String, boolean) - Method in interface edu.stanford.smi.protegex.owl.testing.OWLTestManager
setOWLToolTipGenerator(OWLToolTipGenerator) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.OWLUI
setOwnFacetValue(Slot, Facet, Object) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeInstance
  Deprecated. no OWL equivalent
setOwnFacetValues(Slot, Facet, Collection) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeInstance
  Deprecated. no OWL equivalent
setOwnSlotValue(Frame, Slot, Frame, TripleStore) - Static method in class edu.stanford.smi.protegex.owl.jena.parser.FrameCreatorUtility
setOwnSlotValue(Slot, Object) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeInstance
  Deprecated.
setOwnSlotValues(Slot, Collection) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeInstance
  Deprecated.
setOwnSlotValues(Frame, Slot, Collection) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
setOwnSlotValues(Frame, Instance, Slot) - Method in class edu.stanford.smi.protegex.owl.storage.KnowledgeBaseCopier
setPackage(String) - Method in interface edu.stanford.smi.protegex.owl.emf.EditableEMFGeneratorOptions
setPackage(String) - Method in class edu.stanford.smi.protegex.owl.emf.ProjectBasedEMFGeneratorOptions
setPackage(String) - Method in interface edu.stanford.smi.protegex.owl.javacode.EditableJavaCodeGeneratorOptions
setPackage(String) - Method in class edu.stanford.smi.protegex.owl.javacode.ProjectBasedJavaCodeGeneratorOptions
setPackage(String) - Method in class edu.stanford.smi.protegex.owl.ui.jena.JenaSchemagenPanel
setPackage(String) - Method in class edu.stanford.smi.protegex.owl.ui.menu.code.KazukiPanel
setParseOnly(boolean) - Method in class edu.stanford.smi.protegex.owl.swrl.parser.SWRLParser
setPassword(String) - Method in class edu.stanford.smi.protegex.owl.database.CreateOWLDatabaseProjectPlugin
setPassword(String) - Method in class edu.stanford.smi.protegex.owl.database.creator.AbstractOwlDatabaseCreator
setPattern(RDFSDatatype, String) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFSDatatypeFactory
setPattern(RDFSDatatype, String) - Method in interface edu.stanford.smi.protegex.owl.model.RDFSDatatypeFactory
setPluginFolder(File) - Static method in class edu.stanford.smi.protegex.owl.ProtegeOWL
setPollForEvents(boolean) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not needed
setPrefix(URI, String) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractNamespaceManager
setPrefix(String, String) - Method in class edu.stanford.smi.protegex.owl.model.impl.ImportingOwlNamespaceManager
setPrefix(String, String) - Method in class edu.stanford.smi.protegex.owl.model.impl.OWLNamespaceManager
setPrefix(String, String) - Method in class edu.stanford.smi.protegex.owl.model.impl.UnmodifiableNamespaceManager
setPrefix(URI, String) - Method in class edu.stanford.smi.protegex.owl.model.impl.UnmodifiableNamespaceManager
setPrefix(String, String) - Method in interface edu.stanford.smi.protegex.owl.model.NamespaceMap
setPrefix(URI, String) - Method in interface edu.stanford.smi.protegex.owl.model.NamespaceMap
setPrefix(String, String) - Method in class edu.stanford.smi.protegex.owl.model.triplestore.impl.TripleStoreImpl
setPrefix(URI, String) - Method in class edu.stanford.smi.protegex.owl.model.triplestore.impl.TripleStoreImpl
setPrefix(OWLModel, String, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
setPrefix(String) - Method in class edu.stanford.smi.protegex.owl.ui.triplestore.AddTripleStorePanel
setPrefix(String, String) - Method in class edu.stanford.smi.protegex.owl.writer.xml.XMLWriterNamespaceManager
setPrefixesPanel(PrefixesPanel) - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.imports.ImportsPanel
setPrefixMode(boolean) - Method in interface edu.stanford.smi.protegex.owl.javacode.EditableJavaCodeGeneratorOptions
setPrefixMode(boolean) - Method in class edu.stanford.smi.protegex.owl.javacode.ProjectBasedJavaCodeGeneratorOptions
setPrice(float) - Method in class edu.stanford.smi.protegex.owlx.examples.javaDemo.model.impl.DefaultProduct
setPrice(float) - Method in interface edu.stanford.smi.protegex.owlx.examples.javaDemo.model.Product
setProcessImports(boolean) - Method in class edu.stanford.smi.protegex.owl.jena.creator.JenaCreator
setProduct(Product) - Method in class edu.stanford.smi.protegex.owlx.examples.javaDemo.model.impl.DefaultPurchase
setProduct(Product) - Method in interface edu.stanford.smi.protegex.owlx.examples.javaDemo.model.Purchase
setProfile(String) - Method in interface edu.stanford.smi.protegex.owl.jena.OWLCreateProjectPlugin
setProfile(String) - Method in class edu.stanford.smi.protegex.owl.jena.OWLFilesCreateProjectPlugin
setProfile(String) - Method in class edu.stanford.smi.protegex.owl.storage.ProtegeFromOWLFilesCreateProjectPlugin
setProfile(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.ui.profiles.ProfilesManager
setProfile(PropertyList, String) - Static method in class edu.stanford.smi.protegex.owl.ui.profiles.ProfilesManager
setProfile(OWLProject, String) - Static method in class edu.stanford.smi.protegex.owl.ui.profiles.ProfilesManager
setProfileURI(String) - Method in class edu.stanford.smi.protegex.owl.model.factory.AbstractOwlProjectCreator
setProgress(int) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.AbstractReasonerTask
  Sets the progress of the task, simultaneously notifying listeners that the progress has changed.
setProgress(int) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.AbstractReasonerTask
  Sets the progress of the task, simultaneously notifying listeners that the progress has changed.
setProgress(int) - Method in class edu.stanford.smi.protegex.owl.inference.ui.ReasonerProgressModalDialog
setProgress(int) - Method in class edu.stanford.smi.protegex.owl.model.AbstractTask
setProgress(Task, int) - Method in class edu.stanford.smi.protegex.owl.model.DefaultTaskManager
setProgress(Task, int) - Method in class edu.stanford.smi.protegex.owl.model.impl.NoopProgressDisplay
setProgress(double) - Method in interface edu.stanford.smi.protegex.owl.model.ProgressManager
  Sets an (optional) value for progress bars.
setProgress(Task, int) - Method in interface edu.stanford.smi.protegex.owl.model.TaskManager
setProgress(Task, int) - Method in interface edu.stanford.smi.protegex.owl.model.TaskProgressDisplay
  Updates the value of the progress that is displayed to the user.
setProgress(Task, int) - Method in class edu.stanford.smi.protegex.owl.ui.ProgressDisplayDialog
setProgressBarMaxValue(int) - Method in class edu.stanford.smi.protegex.owl.inference.ui.ReasonerProgressModalDialog
setProgressDisplay(TaskProgressDisplay) - Method in class edu.stanford.smi.protegex.owl.model.DefaultTaskManager
setProgressDisplay(TaskProgressDisplay) - Method in interface edu.stanford.smi.protegex.owl.model.TaskManager
setProgressIndeterminate(boolean) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.AbstractReasonerTask
  Sets the progress as indeterminate, notifying listeners of the change.
setProgressIndeterminate(boolean) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.AbstractReasonerTask
  Sets the progress as indeterminate, notifying listeners of the change.
setProgressIndeterminate(boolean) - Method in class edu.stanford.smi.protegex.owl.inference.ui.ReasonerProgressModalDialog
setProgressIndeterminate(boolean) - Method in class edu.stanford.smi.protegex.owl.model.AbstractTask
setProgressIndeterminate(Task, boolean) - Method in class edu.stanford.smi.protegex.owl.model.impl.NoopProgressDisplay
setProgressIndeterminate(Task, boolean) - Method in interface edu.stanford.smi.protegex.owl.model.TaskProgressDisplay
  Sets the progress display to indicate that the progress cannot be determined, but the task is proceding as normal.
setProgressIndeterminate(Task, boolean) - Method in class edu.stanford.smi.protegex.owl.ui.ProgressDisplayDialog
setProgressText(String) - Method in interface edu.stanford.smi.protegex.owl.jena.creator.ProgressDisplay
setProgressText(String) - Method in class edu.stanford.smi.protegex.owl.ui.widget.ModalProgressBarManager
setProgressValue(double) - Method in interface edu.stanford.smi.protegex.owl.jena.creator.ProgressDisplay
setProgressValue(double) - Method in class edu.stanford.smi.protegex.owl.ui.widget.ModalProgressBarManager
setProject(Project) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
setProject(Project) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
setProjectFileName(String) - Method in class edu.stanford.smi.protegex.owl.jena.JenaOWLModel
  Sets the name of the file in the associated Project.
setProperty(RDFProperty, RDFProperty) - Method in class edu.stanford.smi.protegex.owl.ui.properties.OWLSuperpropertiesPanel
setPropertyPredicate(OWLDatatypeProperty) - Method in class edu.stanford.smi.protegex.owl.swrl.model.impl.DefaultSWRLDatavaluedPropertyAtom
setPropertyPredicate(OWLObjectProperty) - Method in class edu.stanford.smi.protegex.owl.swrl.model.impl.DefaultSWRLIndividualPropertyAtom
setPropertyPredicate(OWLDatatypeProperty) - Method in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLDatavaluedPropertyAtom
setPropertyPredicate(OWLObjectProperty) - Method in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLIndividualPropertyAtom
setPropertyValue(RDFProperty, Object) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
setPropertyValue(RDFProperty, Object) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFIndividual
setPropertyValue(RDFProperty, Object) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
setPropertyValue(RDFResource, RDFProperty, Object) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
setPropertyValue(RDFProperty, Object) - Method in interface edu.stanford.smi.protegex.owl.model.RDFResource
setPropertyValues(RDFProperty, Collection) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
setPropertyValues(RDFProperty, Collection) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFIndividual
setPropertyValues(RDFProperty, Collection) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
setPropertyValues(RDFResource, RDFProperty, Collection) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
setPropertyValues(RDFProperty, Collection) - Method in interface edu.stanford.smi.protegex.owl.model.RDFResource
setPropertyValueValidator(PropertyValueValidator) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
setPropertyValueValidator(PropertyValueValidator) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Sets the validator that shall be used in future calls of the validation methods.
setProtegeReasonerClass(OWLModel, Class) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.ReasonerManager
setProtegeReasonerClass(OWLModel, String) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.ReasonerManager
setProtegeType(RDFSClass) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
setProtegeType(RDFSClass) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFIndividual
setProtegeType(RDFSClass) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
setProtegeType(RDFResource, RDFSClass) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
setProtegeType(RDFSClass) - Method in interface edu.stanford.smi.protegex.owl.model.RDFResource
setProtegeTypes(Collection) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
setProtegeTypes(Collection) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFIndividual
setProtegeTypes(Collection) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
setProtegeTypes(RDFResource, Collection) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
setProtegeTypes(Collection) - Method in interface edu.stanford.smi.protegex.owl.model.RDFResource
setPurchases(Collection) - Method in interface edu.stanford.smi.protegex.owlx.examples.javaDemo.model.Customer_
setPurchases(Collection) - Method in class edu.stanford.smi.protegex.owlx.examples.javaDemo.model.impl.DefaultCustomer_
setQueryText(String) - Method in class edu.stanford.smi.protegex.owl.ui.query.SPARQLQueryPanel
setQueryText(String) - Method in class edu.stanford.smi.protegex.owl.ui.query.SPARQLResultsPanel
setRange(RDFResource) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
setRange(RDFResource) - Method in interface edu.stanford.smi.protegex.owl.model.RDFProperty
  Sets the rdfs:range of this.
setRanges(Collection) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
setRanges(Collection) - Method in interface edu.stanford.smi.protegex.owl.model.RDFProperty
  Sets all ranges of this (in the unlikely case that multiple are needed).
setRDFType(RDFSClass) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
setRDFType(RDFSClass) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFIndividual
setRDFType(RDFSClass) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
setRDFType(RDFResource, RDFSClass) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
setRDFType(RDFSClass) - Method in interface edu.stanford.smi.protegex.owl.model.RDFResource
setRDFTypeOfSubproperties(RDFSNamedClass) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
setRDFTypes(Collection) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
setRDFTypes(Collection) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFIndividual
setRDFTypes(Collection) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
setRDFTypes(RDFResource, Collection) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
setRDFTypes(Collection) - Method in interface edu.stanford.smi.protegex.owl.model.RDFResource
setReader(Reader) - Method in class edu.stanford.smi.protegex.owl.jena.creator.OwlProjectFromReaderCreator
setReasonerDescription(String) - Method in class edu.stanford.smi.protegex.owl.inference.ui.ReasonerProgressModalDialog
setReasonerIdentity(DIGReasonerIdentity) - Method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DefaultDIGRenderer
setReasonerIdentity(DIGReasonerIdentity) - Method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DefaultDIGTranslator
setReasonerIdentity(DIGReasonerIdentity) - Method in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGRenderer
  Sets the DIG Reasoner Identity that will constrain the representation when OWLModel elements are translated to DIG.
setReasonerIdentity(DIGReasonerIdentity) - Method in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGTranslator
  Sets the reasoner identity that the translator will respect when it translates the ontology DIG.
setReasonerTaskListener(ReasonerTaskListener) - Method in class edu.stanford.smi.protegex.owl.inference.reasoner.AbstractProtegeReasoner
setReasonerTaskListener(ReasonerTaskListener) - Method in interface edu.stanford.smi.protegex.owl.inference.reasoner.ProtegeReasoner
  Set the listener which will be informed of the progress of the reasoning task.
setReasonerURL(String) - Method in class edu.stanford.smi.protegex.owl.inference.dig.reasoner.DefaultDIGReasoner
  Sets the URL of the inference.
setReasonerURL(String) - Method in interface edu.stanford.smi.protegex.owl.inference.dig.reasoner.DIGReasoner
  Sets the URL of the reasoner.
setReasonerURL(String) - Method in class edu.stanford.smi.protegex.owl.inference.util.ReasonerPreferences
  Sets the URL for the external DIG Reasoner
setRemoveActionIconBase(String) - Method in class edu.stanford.smi.protegex.owl.ui.properties.OWLSuperpropertiesPanel
setRenderCardinalityAsInt(boolean) - Static method in class edu.stanford.smi.protegex.owl.writer.rdfxml.renderer.RDFResourceRenderer
setRenderer(DefaultRenderer) - Method in class edu.stanford.smi.protegex.owl.ui.cls.AssertedClassesPanel
setRenderer(DefaultRenderer) - Method in class edu.stanford.smi.protegex.owl.ui.cls.OWLSubclassPane
setRenderer(DefaultRenderer) - Method in class edu.stanford.smi.protegex.owl.ui.existential.ExistentialTreePanel
setRenderer(DefaultRenderer) - Method in class edu.stanford.smi.protegex.owl.ui.explorer.ExplorerTreePanel
setRenderer(FrameRenderer) - Method in class edu.stanford.smi.protegex.owl.ui.properties.OWLPropertyHierarchyPanel
setRenderer(DefaultRenderer) - Method in class edu.stanford.smi.protegex.owl.ui.properties.OWLSubpropertyPane
setRenderer(DefaultRenderer) - Method in class edu.stanford.smi.protegex.owl.ui.subsumption.SubsumptionTreePanel
setRepository(Repository) - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.imports.wizard.AbstractImportEntry
setRequestAbort() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.AbstractReasonerTask
setRequestAbort() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.ClassifyTaxonomyTask
setRequestAbort() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.AbstractReasonerTask
setRequestAbort() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.ClassifyTaxonomyTask
setRequestAbort() - Method in interface edu.stanford.smi.protegex.owl.inference.protegeowl.task.ReasonerTask
setResource(RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.individuals.AssertedTypesListPanel
setResource(RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.resourcedisplay.ResourceDisplay
setResource(RDFResource) - Method in interface edu.stanford.smi.protegex.owl.ui.resourcedisplay.ResourcePanel
SetResourceAction - Class in edu.stanford.smi.protegex.owl.ui.components.singleresource
SetResourceAction(PropertyValuesComponent) - Constructor for class edu.stanford.smi.protegex.owl.ui.components.singleresource.SetResourceAction
setResourceActionsEnabled(JPopupMenu, boolean) - Static method in class edu.stanford.smi.protegex.owl.ui.actions.ResourceActionManager
setResourcePanelFactory(ResourcePanelFactory) - Static method in class edu.stanford.smi.protegex.owl.ui.ProtegeUI
setResourceURI(String) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFExternalResource
setResourceURI(String) - Method in interface edu.stanford.smi.protegex.owl.model.RDFExternalResource
  Sets the URI string.
setRest(RDFList) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFList
setRest(RDFList) - Method in interface edu.stanford.smi.protegex.owl.model.RDFList
setRestrictionProperty(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.ui.restrictions.FillerTextArea
setResults(List) - Method in class edu.stanford.smi.protegex.owl.ui.testing.OWLTestResultsPanel
setRoot(RDFSClass) - Method in class edu.stanford.smi.protegex.owl.ui.explorer.ExplorerTreePanel
setRootFolder(String) - Method in class edu.stanford.smi.protegex.owl.ui.menu.code.KazukiPanel
setRowOf(SWRLImp, int) - Method in class edu.stanford.smi.protegex.owl.swrl.ui.table.SWRLTableModel
setSaveResultsEnabled(boolean) - Method in class edu.stanford.smi.protegex.owl.ui.search.finder.FindResultsPanel
setSearchSynonymProperties(Collection) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
setSearchSynonymProperties(Collection) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
setSelectedClass(RDFSClass) - Method in class edu.stanford.smi.protegex.owl.ui.cls.AssertedClassesPanel
setSelectedClass(RDFSClass) - Method in interface edu.stanford.smi.protegex.owl.ui.cls.ClassTreePanel
  Selects a given class in the tree.
setSelectedClass(RDFSClass) - Method in interface edu.stanford.smi.protegex.owl.ui.cls.Hierarchy
setSelectedClass(RDFSClass) - Method in class edu.stanford.smi.protegex.owl.ui.cls.OWLSubclassPane
setSelectedClass(RDFSClass) - Method in class edu.stanford.smi.protegex.owl.ui.existential.ExistentialTreePanel
setSelectedClass(RDFSClass) - Method in class edu.stanford.smi.protegex.owl.ui.explorer.ExplorerTreePanel
setSelectedClass(RDFSNamedClass) - Method in class edu.stanford.smi.protegex.owl.ui.individuals.IndividualsTabClassesPanel
setSelectedClass(RDFSClass) - Method in class edu.stanford.smi.protegex.owl.ui.individuals.IndividualsTabClassesPanel
setSelectedClass(RDFSNamedClass) - Method in class edu.stanford.smi.protegex.owl.ui.individuals.OWLIndividualsTab
setSelectedClass(RDFSClass) - Method in class edu.stanford.smi.protegex.owl.ui.subsumption.InferredSubsumptionTreePanel
setSelectedClass(RDFSClass) - Method in class edu.stanford.smi.protegex.owl.ui.subsumption.SubsumptionTreePanel
setSelectedClassDelegate(Cls) - Method in class edu.stanford.smi.protegex.owl.ui.cls.OWLSubclassPane
setSelectedClasses(Collection) - Method in class edu.stanford.smi.protegex.owl.ui.cls.OWLSubclassPane
setSelectedClassesDelegate(Collection) - Method in class edu.stanford.smi.protegex.owl.ui.cls.OWLSubclassPane
setSelectedCls(Cls) - Method in class edu.stanford.smi.protegex.owl.ui.cls.AssertedClassesPanel
  Deprecated.
setSelectedCls(Cls) - Method in class edu.stanford.smi.protegex.owl.ui.cls.ClassTreeWithBrowserText
setSelectedCls(OWLNamedClass) - Method in class edu.stanford.smi.protegex.owl.ui.cls.OWLClassesTab
  Deprecated. please replace with the one with RDFSNamedClass please
setSelectedCls(RDFSNamedClass) - Method in class edu.stanford.smi.protegex.owl.ui.cls.OWLClassesTab
setSelectedCls(Cls) - Method in class edu.stanford.smi.protegex.owl.ui.cls.OWLSubclassPane
  Deprecated.
setSelectedCls(Cls) - Method in class edu.stanford.smi.protegex.owl.ui.individuals.IndividualsTabClassesPanel
  Deprecated.
setSelectedCls(Cls) - Method in class edu.stanford.smi.protegex.owl.ui.individuals.OWLIndividualsTab
  Deprecated.
setSelectedClses(Collection) - Method in class edu.stanford.smi.protegex.owl.ui.cls.OWLSubclassPane
  Deprecated.
setSelectedInstance(Instance) - Method in class edu.stanford.smi.protegex.owl.ui.individuals.AssertedInstancesListPanel
setSelectedInstance(Instance) - Method in class edu.stanford.smi.protegex.owl.ui.individuals.OWLIndividualsTab
  Deprecated.
setSelectedItem(Object) - Method in class edu.stanford.smi.protegex.owl.ui.navigation.NavigationHistoryManager
setSelectedItem(Object) - Method in class edu.stanford.smi.protegex.owl.ui.resourceselection.ResourceFilterListModel
setSelectedNamespace(String) - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.imports.ImportsPanel
setSelectedNodeInTree(SelectableTree, RDFResource) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.OWLUI
  Selects an RDF resource in a selectable class-subclass tree.
setSelectedNodeInTree(SelectableTree, RDFResource, Slot) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.OWLUI
  Selects an RDF resource in a selectable tree.
setSelectedNodeInTree(SelectableTree, RDFResource, Slot, Class) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.OWLUI
  Selects an RDF resource in a selectable tree.
setSelectedObjectPath(JTree, Collection) - Method in class edu.stanford.smi.protegex.owl.ui.cls.ClassTreeWithBrowserText
setSelectedObjectPath(JTree, Collection) - Method in class edu.stanford.smi.protegex.owl.ui.cls.OWLSubclassPane
setSelectedPlugin(RepositoryCreatorWizardPlugin) - Method in class edu.stanford.smi.protegex.owl.ui.repository.wizard.RepositoryWizard
setSelectedProperty(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.ui.properties.OWLPropertiesTab
setSelectedResource(RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.individuals.OWLIndividualsTab
setSelectedRestriction(OWLRestriction) - Method in class edu.stanford.smi.protegex.owl.ui.clsproperties.PropertyRestrictionsTree
setSelectedResultsPanel(OWLModel, ResultsPanel) - Static method in class edu.stanford.smi.protegex.owl.ui.results.ResultsPanelManager
setSelectedRow(RDFResource) - Method in class edu.stanford.smi.protegex.owl.swrl.ui.table.SWRLTable
setSelectedRow(Object) - Method in class edu.stanford.smi.protegex.owl.ui.components.literaltable.LiteralTable
setSelectedRow(int) - Method in class edu.stanford.smi.protegex.owl.ui.components.rdflist.RDFListComponent
setSelectedRow(int) - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsWidget
setSelectedRow(RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.owltable.SymbolTable
setSelectedRow(String) - Method in class edu.stanford.smi.protegex.owl.ui.owltable.SymbolTable
setSelectedRow(int) - Method in class edu.stanford.smi.protegex.owl.ui.owltable.SymbolTable
setSelectedRuleName(String) - Static method in class edu.stanford.smi.protegex.owl.swrl.P3SWRLTabPluginManager
setSelectedSlot(OWLProperty) - Method in class edu.stanford.smi.protegex.owl.ui.properties.OWLPropertiesTab
  Deprecated.
setSelectedTab(Component) - Method in class edu.stanford.smi.protegex.owl.ui.widget.MultiWidgetPropertyWidget
setSelectedTriples(Collection) - Method in class edu.stanford.smi.protegex.owl.ui.cls.ClassTree
setSelectedTriples(Collection) - Method in class edu.stanford.smi.protegex.owl.ui.components.multiresource.MultiResourceList
setSelectedTriples(Collection) - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTable
setSelectedTriples(Collection) - Method in class edu.stanford.smi.protegex.owl.ui.individuals.InstancesList
setSelectedTriples(Collection) - Method in class edu.stanford.smi.protegex.owl.ui.owltable.SymbolTable
setSelectedTriples(Collection) - Method in interface edu.stanford.smi.protegex.owl.ui.TripleSelectable
  Attempts to select given Triples in this.
setSelectedURI(String) - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.prefixes.PrefixesPanel
setSelection(JComponent, int, int) - Method in class edu.stanford.smi.protegex.owl.ui.actions.FrameListPopupMenuMouseListener
setSelectionDialogFactory(SelectionDialogFactory) - Static method in class edu.stanford.smi.protegex.owl.ui.ProtegeUI
setSessionObject(String, Object) - Method in class edu.stanford.smi.protegex.owl.model.project.AbstractOWLProject
setSessionObject(String, Object) - Method in interface edu.stanford.smi.protegex.owl.model.project.OWLProject
  Sets a session object.
setSetMode(boolean) - Method in interface edu.stanford.smi.protegex.owl.javacode.EditableJavaCodeGeneratorOptions
setSetMode(boolean) - Method in class edu.stanford.smi.protegex.owl.javacode.ProjectBasedJavaCodeGeneratorOptions
setShowDisplaySlotPanel(boolean) - Method in class edu.stanford.smi.protegex.owl.ui.individuals.AssertedInstancesListPanel
  Deprecated.
setShowHiddenResources(boolean) - Method in class edu.stanford.smi.protegex.owl.ui.resourceselection.ResourceSelectionAction
setShowReasonerResultsPanel(boolean) - Method in class edu.stanford.smi.protegex.owl.inference.util.ReasonerPreferences
setShowWarningResultsPanel(boolean) - Method in class edu.stanford.smi.protegex.owl.inference.util.ReasonerPreferences
setSlot(Slot) - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsWidget
setSlot(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.ui.properties.domain.OWLDomainTableModel
setSomeValuesFrom(RDFResource) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLSomeValuesFrom
setSomeValuesFrom(RDFResource) - Method in interface edu.stanford.smi.protegex.owl.model.OWLSomeValuesFrom
  Sets the owl:someValuesFrom filler.
setSortAlphabetically(boolean) - Method in class edu.stanford.smi.protegex.owl.writer.rdfxml.util.ProtegeWriterSettings
setSortClassTreeAfterLoadOption(boolean) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.OWLUI
setSortClassTreeOption(boolean) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.OWLUI
setSortColumn(int) - Method in class edu.stanford.smi.protegex.owl.ui.matrix.MatrixTableModel
setSortColumn(int) - Method in class edu.stanford.smi.protegex.owl.ui.search.FindUsageTableModel
setSortPropertiesTreeOption(boolean) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.OWLUI
setStream(InputStream) - Method in class edu.stanford.smi.protegex.owl.jena.creator.OwlProjectFromStreamCreator
setString(String, String) - Method in class edu.stanford.smi.protegex.owl.model.project.DefaultSettingsMap
setString(String, String) - Method in interface edu.stanford.smi.protegex.owl.model.project.SettingsMap
setStyle(String) - Static method in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
setSubclassesDisjoint(boolean) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLNamedClass
setSubclassesDisjoint(boolean) - Method in interface edu.stanford.smi.protegex.owl.model.OWLNamedClass
  Sets the value of the protege:subclassesDisjoint flag at this class.
SetSubclassesDisjointFalseAction - Class in edu.stanford.smi.protegex.owl.ui.actions
SetSubclassesDisjointFalseAction() - Constructor for class edu.stanford.smi.protegex.owl.ui.actions.SetSubclassesDisjointFalseAction
SetSubclassesDisjointTrueAction - Class in edu.stanford.smi.protegex.owl.ui.actions
SetSubclassesDisjointTrueAction() - Constructor for class edu.stanford.smi.protegex.owl.ui.actions.SetSubclassesDisjointTrueAction
setSubject(RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.components.AbstractPropertyValuesComponent
setSubject(RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.components.datarangefield.DataRangeFieldComponent
setSubject(RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.components.literaltable.LiteralTable
setSubject(RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.components.literaltable.LiteralTableComponent
setSubject(RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.components.literaltable.LiteralTableModel
setSubject(RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.components.multiresource.MultiResourceComponent
setSubject(RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.components.multiresource.MultiResourceListModel
setSubject(RDFResource) - Method in interface edu.stanford.smi.protegex.owl.ui.components.PropertyValuesComponent
setSubject(RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.components.rdflist.RDFListComponent
setSubject(RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.components.singleliteral.AbstractSingleLiteralComponent
setSubject(RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.components.triples.AbstractTriplesComponent
setSubject(RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.components.triples.TriplesTableModel
setSWRLClassesAndPropertiesVisible(Project, boolean) - Static method in class edu.stanford.smi.protegex.owl.swrl.ui.SWRLProjectPlugin
setSymbolEditor(SymbolEditor) - Method in class edu.stanford.smi.protegex.owl.ui.code.SymbolPanel
setSymbolEditorHandler(SymbolEditorHandler) - Method in class edu.stanford.smi.protegex.owl.swrl.ui.table.SWRLSymbolEditor
setSymbolEditorHandler(SymbolEditorHandler) - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.ClassDescriptionEditorComponent
setSymbolEditorHandler(SymbolEditorHandler) - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.manchester.ManchesterOWLTextPane
setSymbolEditorHandler(SymbolEditorHandler) - Method in class edu.stanford.smi.protegex.owl.ui.code.SymbolEditorComponent
setSymbolEditorHandler(SymbolEditorHandler) - Method in class edu.stanford.smi.protegex.owl.ui.code.SymbolTextField
setSymmetric(boolean) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLObjectProperty
setSymmetric(boolean) - Method in interface edu.stanford.smi.protegex.owl.model.OWLObjectProperty
setTable(String) - Method in class edu.stanford.smi.protegex.owl.database.CreateOWLDatabaseProjectPlugin
setTable(String) - Method in class edu.stanford.smi.protegex.owl.database.creator.AbstractOwlDatabaseCreator
setTable(TriplesTable) - Method in class edu.stanford.smi.protegex.owl.ui.components.triples.TriplesTableModel
setTabSize(int) - Method in class edu.stanford.smi.protegex.owl.model.classparser.compact.JavaCharStream
setTabSize(int) - Method in class edu.stanford.smi.protegex.owl.model.classparser.dl.JavaCharStream
setTabSize(int) - Method in class edu.stanford.smi.protegex.owl.model.classparser.manchester.JavaCharStream
setTask(ReasonerTask) - Method in class edu.stanford.smi.protegex.owl.inference.ui.ReasonerProgressModalDialog
setTaskCompleted() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.AbstractReasonerTask
  Sets the task as having a 'complete' status, notifying listeners that the task is complete.
setTaskCompleted() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.AbstractReasonerTask
  Sets the task as having a 'complete' status, notifying listeners that the task is complete.
setTaskFailed() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.AbstractReasonerTask
  Sets the task as having a 'failed' status, notifying listeners that the task failed.
setTaskFailed() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.AbstractReasonerTask
  Sets the task as having a 'failed' status, notifying listeners that the task failed.
setTaskManager(TaskManager) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
setTaskManager(TaskManager) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
  Sets the TaskManager.
setTemplateFacetValue(Slot, Facet, Object) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeCls
  Deprecated. no OWL equivalent
setTemplateFacetValue(Cls, Slot, Facet, Object) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not supported by OWL
setTemplateFacetValues(Slot, Facet, Collection) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeCls
  Deprecated. no OWL equivalent
setTemplateFacetValues(Cls, Slot, Facet, Collection) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not supported by OWL
setTemplateSlotAllowedClses(Slot, Collection) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeCls
  Deprecated. no OWL equivalent
setTemplateSlotAllowedClses(Cls, Slot, Collection) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not supported by OWL
setTemplateSlotAllowedParents(Slot, Collection) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeCls
  Deprecated. no OWL equivalent
setTemplateSlotAllowedParents(Cls, Slot, Collection) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not supported by OWL
setTemplateSlotAllowedValues(Slot, Collection) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeCls
  Deprecated. no OWL equivalent
setTemplateSlotAllowedValues(Cls, Slot, Collection) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not supported by OWL
setTemplateSlotAllowsMultipleValues(Slot, boolean) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeCls
  Deprecated. no OWL equivalent
setTemplateSlotAllowsMultipleValues(Cls, Slot, boolean) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not supported by OWL
setTemplateSlotDefaultValues(Slot, Collection) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeCls
  Deprecated. no OWL equivalent
setTemplateSlotDefaultValues(Cls, Slot, Collection) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not supported by OWL
setTemplateSlotDocumentation(Slot, String) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeCls
  Deprecated. no OWL equivalent
setTemplateSlotDocumentation(Slot, Collection) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeCls
  Deprecated. no OWL equivalent
setTemplateSlotDocumentation(Cls, Slot, String) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not supported by OWL
setTemplateSlotDocumentation(Cls, Slot, Collection) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not supported by OWL
setTemplateSlotMaximumCardinality(Slot, int) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeCls
  Deprecated. no OWL equivalent
setTemplateSlotMaximumCardinality(Cls, Slot, int) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not supported by OWL
setTemplateSlotMaximumValue(Slot, Number) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeCls
  Deprecated. no OWL equivalent
setTemplateSlotMaximumValue(Cls, Slot, Number) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not supported by OWL
setTemplateSlotMinimumCardinality(Slot, int) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeCls
  Deprecated. no OWL equivalent
setTemplateSlotMinimumCardinality(Cls, Slot, int) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not supported by OWL
setTemplateSlotMinimumValue(Slot, Number) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeCls
  Deprecated. no OWL equivalent
setTemplateSlotMinimumValue(Cls, Slot, Number) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not supported by OWL
setTemplateSlotValue(Slot, Object) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeCls
  Deprecated. no OWL equivalent
setTemplateSlotValue(Cls, Slot, Object) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not supported by OWL
setTemplateSlotValues(Slot, Collection) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeCls
  Deprecated. no OWL equivalent
setTemplateSlotValues(Cls, Slot, Collection) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not supported by OWL
setTemplateSlotValueType(Slot, ValueType) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeCls
  Deprecated. no OWL equivalent
setTemplateSlotValueType(Cls, Slot, ValueType) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not supported by OWL
setText(String) - Method in interface edu.stanford.smi.protegex.owl.model.ProgressManager
  Changes the status text that is being displayed.
setText(RDFSClass) - Method in class edu.stanford.smi.protegex.owl.ui.code.OWLTextArea
setText(String) - Method in class edu.stanford.smi.protegex.owl.ui.resourcedisplay.InstanceNameComponent
setText(String) - Method in class edu.stanford.smi.protegex.owl.ui.resourcedisplay.InstanceNameEditor
setText(String) - Method in class edu.stanford.smi.protegex.owl.writer.xml.DefaultXMLWriter.XMLElement
setTextBox(JTextComponent) - Method in interface edu.stanford.smi.protegex.owl.ui.search.finder.FindAction
setTime(Date) - Method in class edu.stanford.smi.protegex.owl.ui.widget.TimePanel
setTime(String) - Method in class edu.stanford.smi.protegex.owl.ui.widget.TimePanel
setTime(int, int, int) - Method in class edu.stanford.smi.protegex.owl.ui.widget.TimePanel
SETTINGS_MAP_KEY - Static variable in class edu.stanford.smi.protegex.owl.ui.components.annotations.DefaultAnnotations
SettingsMap - Interface in edu.stanford.smi.protegex.owl.model.project
  A generic interface to store project-related settings and configurations.
setTopTripleStore(TripleStore) - Method in class edu.stanford.smi.protegex.owl.model.triplestore.impl.TripleStoreModelImpl
setTopTripleStore(TripleStore) - Method in interface edu.stanford.smi.protegex.owl.model.triplestore.TripleStoreModel
  Sets the top level triple store to the currently active triple store.
setTopTripleStore(TripleStore) - Method in class edu.stanford.smi.protegex.owl.server.triplestore.ClientTripleStoreModel
setTransitive(boolean) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLObjectProperty
setTransitive(boolean) - Method in interface edu.stanford.smi.protegex.owl.model.OWLObjectProperty
setTreatErrorsAsWarnings(boolean) - Method in class edu.stanford.smi.protegex.owl.inference.dig.reasoner.DIGReasonerPreferences
  Specifies whether DIG Errors should be regarded as warnings
setType(OWLModel, String, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
setType(int) - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTableItem
setTypes(Collection) - Method in class edu.stanford.smi.protegex.owl.ui.individuals.InferredInstancesListPanel
setUndoEnabled(boolean) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
setUnionRangeClasses(Collection) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
setUnionRangeClasses(Collection) - Method in interface edu.stanford.smi.protegex.owl.model.RDFProperty
setup(WidgetDescriptor, boolean, Project, Cls, Slot) - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsWidget
setup(WidgetDescriptor, boolean, Project, Cls, Slot) - Method in class edu.stanford.smi.protegex.owl.ui.widget.MultiWidgetPropertyWidget
  Overloaded to forward the method call into all nested components.
setupDragAndDrop() - Method in class edu.stanford.smi.protegex.owl.ui.cls.OWLSubclassPane
setupSubWidgets(Slot, Cls, boolean, Project) - Method in class edu.stanford.smi.protegex.owl.ui.metadata.RDFSNamedClassMetadataWidget
setupSubWidgets(Slot, Cls, boolean, Project) - Method in class edu.stanford.smi.protegex.owl.ui.widget.MultiWidgetPropertyWidget
setURL(String) - Method in class edu.stanford.smi.protegex.owl.database.CreateOWLDatabaseProjectPlugin
setUrl(String) - Method in class edu.stanford.smi.protegex.owl.database.CreateOWLDatabaseProjectPlugin
setURL(String) - Method in class edu.stanford.smi.protegex.owl.database.creator.AbstractOwlDatabaseCreator
setURL(String) - Method in class edu.stanford.smi.protegex.owl.inference.dig.DefaultProtegeDIGReasoner
setURL(String) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.DefaultProtegeOWLReasoner
setURL(String) - Method in interface edu.stanford.smi.protegex.owl.inference.protegeowl.ProtegeOWLReasoner
  Deprecated. Sets the URL of the external DIG reasoner
setUseDefaultCharacterMap() - Static method in class edu.stanford.smi.protegex.owl.model.classparser.compact.CompactParserUtil
setUseDefaultCharacterMap() - Static method in class edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxParserUtil
setUseInferredSuperclasses(boolean) - Method in class edu.stanford.smi.protegex.owl.ui.explorer.filter.DefaultExplorerFilter
setUseNamespaceEntities(boolean) - Method in class edu.stanford.smi.protegex.owl.writer.xml.XMLWriterPreferences
setUserDefinedDatatypesSupported(OWLModel, boolean) - Static method in class edu.stanford.smi.protegex.owl.ui.menu.preferences.ProtegeSettingsPanel
setUsername(String) - Method in class edu.stanford.smi.protegex.owl.database.CreateOWLDatabaseProjectPlugin
setUsername(String) - Method in class edu.stanford.smi.protegex.owl.database.creator.AbstractOwlDatabaseCreator
setUserObject(Object) - Method in class edu.stanford.smi.protegex.owl.testing.DefaultOWLTestResult
setUserObject(Object) - Method in class edu.stanford.smi.protegex.owl.ui.clsproperties.NewRestrictionTreeNode
setUserObject(Object) - Method in class edu.stanford.smi.protegex.owl.ui.clsproperties.OldRestrictionTreeNode
setUseXMLEntities(boolean) - Method in class edu.stanford.smi.protegex.owl.writer.rdfxml.util.ProtegeWriterSettings
setValidProperty(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.ui.explorer.filter.DefaultExplorerFilter
setValue(Object, int) - Method in class edu.stanford.smi.protegex.owl.ui.components.triples.TriplesTableModel
setValue(int) - Method in class edu.stanford.smi.protegex.owl.ui.widget.ModalProgressBarDialog
setValue(String) - Method in class edu.stanford.smi.protegex.owl.ui.widget.OWLDateTimeWidget
setValue(String) - Method in class edu.stanford.smi.protegex.owl.ui.widget.OWLDateWidget
setValueAndGetIt(Object, int, int) - Method in class edu.stanford.smi.protegex.owl.ui.components.triples.TriplesTableModel
setValueAt(Object, int, int) - Method in class edu.stanford.smi.protegex.owl.swrl.ui.table.SWRLTableModel
setValueAt(Object, int, int) - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.DisjointClassesTableModel
setValueAt(int, OWLModel, String) - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.PropertiesDefinitionTableModel
setValueAt(int, OWLModel, String) - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.PropertiesSuperclassesTableModel
setValueAt(Object, int, int) - Method in class edu.stanford.smi.protegex.owl.ui.components.literaltable.LiteralTableModel
setValueAt(Object, int, int) - Method in class edu.stanford.smi.protegex.owl.ui.components.triples.TriplesTable
setValueAt(Object, int, int) - Method in class edu.stanford.smi.protegex.owl.ui.components.triples.TriplesTableModel
setValueAt(Object, int, int) - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTable
setValueAt(Object, int, int) - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTableModel
setValueAt(int, OWLModel, String) - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTableModel
setValueAt(RDFResource, Object) - Method in class edu.stanford.smi.protegex.owl.ui.matrix.AnnotationPropertyMatrixColumn
setValueAt(RDFResource, Object) - Method in interface edu.stanford.smi.protegex.owl.ui.matrix.EditableMatrixColumn
  Called when editing has been finished.
setValueAt(Object, int, int) - Method in class edu.stanford.smi.protegex.owl.ui.matrix.MatrixTableModel
setValueAt(RDFResource, Object) - Method in class edu.stanford.smi.protegex.owl.ui.matrix.NameMatrixColumn
setValueAt(Object, int, int) - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.imports.wizard.AddedPrefixesTableModel
setValueAt(Object, int, int) - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.prefixes.PrefixesTableModel
setValueAt(Object, int, int) - Method in class edu.stanford.smi.protegex.owl.ui.owltable.AbstractOWLTableModel
setValueAt(int, OWLModel, String) - Method in class edu.stanford.smi.protegex.owl.ui.owltable.AbstractOWLTableModel
setValueAt(Object, int, int) - Method in class edu.stanford.smi.protegex.owl.ui.owltable.OWLTable
setValueAt(Object, int, int) - Method in class edu.stanford.smi.protegex.owl.ui.testing.OWLTestSettingsTableModel
setValueChecking(boolean) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not needed
setValueRelative(double) - Method in class edu.stanford.smi.protegex.owl.ui.widget.ModalProgressBarDialog
setValues(Slot, Collection) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not supported in OWL
setValues(Collection) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeSlot
  Deprecated. no OWL equivalent
setValues(Collection) - Method in class edu.stanford.smi.protegex.owl.ui.components.literaltable.LiteralTableModel
setValues(Collection) - Method in class edu.stanford.smi.protegex.owl.ui.properties.domain.OWLDomainWidget
setValues(Collection) - Method in class edu.stanford.smi.protegex.owl.ui.properties.OWLInversePropertyWidget
setValues(Collection) - Method in class edu.stanford.smi.protegex.owl.ui.properties.range.OWLRangeWidget
setValues(Collection) - Method in class edu.stanford.smi.protegex.owl.ui.properties.types.AbstractPropertyTypesWidget
setValues(Collection) - Method in class edu.stanford.smi.protegex.owl.ui.widget.AbstractPropertyValuesWidget
setValues(Collection) - Method in class edu.stanford.smi.protegex.owl.ui.widget.InferredSuperClassesWidget
setValues(Collection) - Method in class edu.stanford.smi.protegex.owl.ui.widget.OWLDateWidget
setValuesFrom(RDFSClass) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLCardinalityBase
setValuesFrom(RDFSClass) - Method in interface edu.stanford.smi.protegex.owl.model.OWLCardinalityBase
setValueType(Slot, ValueType) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated.
setValueType(ValueType) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeSlot
  Deprecated.
setValueType(Slot, Slot) - Method in class edu.stanford.smi.protegex.owl.storage.KnowledgeBaseCopier
setValueType(Slot, Slot) - Method in class edu.stanford.smi.protegex.owl.storage.ProtegeSaver
setVersionString(String) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not needed
setViewActiveOnly(boolean) - Method in class edu.stanford.smi.protegex.owl.model.triplestore.impl.TripleStoreModelImpl
setViewActiveOnly(boolean) - Method in interface edu.stanford.smi.protegex.owl.model.triplestore.TripleStoreModel
setViewActiveOnly(boolean) - Method in class edu.stanford.smi.protegex.owl.server.triplestore.ClientTripleStoreModel
setVisible(boolean) - Method in interface edu.stanford.smi.protegex.owl.model.RDFResource
  Sets this resource visible or invisible.
setWarningsAsErrors(boolean) - Method in class edu.stanford.smi.protegex.owl.inference.util.ReasonerPreferences
setWrapAttributes(boolean) - Method in class edu.stanford.smi.protegex.owl.writer.xml.DefaultXMLWriter
setWrapAttributes(boolean) - Method in class edu.stanford.smi.protegex.owl.writer.xml.DefaultXMLWriter.XMLElement
setWrapAttributes(boolean) - Method in interface edu.stanford.smi.protegex.owl.writer.xml.XMLWriter
  Causes the current element's attributes to be wrapped in the output.
setWriterSettings(WriterSettings) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
setWriterSettings(WriterSettings) - Method in interface edu.stanford.smi.protegex.owl.model.OWLModel
setXmlBase(String) - Method in class edu.stanford.smi.protegex.owl.jena.creator.OwlProjectFromReaderCreator
setXmlBase(String) - Method in class edu.stanford.smi.protegex.owl.jena.creator.OwlProjectFromStreamCreator
setXMLTagHidden(boolean) - Static method in class edu.stanford.smi.protegex.owl.jena.Jena
setZipCode(int) - Method in interface edu.stanford.smi.protegex.owlx.examples.javaDemo.model.Customer_
setZipCode(int) - Method in class edu.stanford.smi.protegex.owlx.examples.javaDemo.model.impl.DefaultCustomer_
shallowCopy(KnowledgeBase, Map) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeInstance
  Deprecated. not needed
SHORT - Static variable in interface edu.stanford.smi.protegex.owl.model.XSDNames
shortForm(String) - Method in class edu.stanford.smi.protegex.owl.jena.graph.ProtegePrefixMapping
shouldDisplaySlot(Cls, Slot) - Method in class edu.stanford.smi.protegex.owl.ui.resourcedisplay.ResourceDisplay
show(OWLModel, DefaultExplorerFilter) - Static method in class edu.stanford.smi.protegex.owl.ui.explorer.filter.ExplorerFilterPanel
show(RDFResource) - Static method in class edu.stanford.smi.protegex.owl.ui.ProtegeUI
  Shows a given RDFResource in an external window.
show(OWLModel, boolean) - Static method in class edu.stanford.smi.protegex.owl.ui.query.SPARQLOWLModelAction
show(Component, String, String) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.HTMLEditorPanel
show(Component, String, String, boolean) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.HTMLEditorPanel
show(Component, RDFSLiteral, String, OWLModel) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.HTMLEditorPanel
SHOW_EXPLORER - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
SHOW_INHERITED_RESTRICTIONS - Static variable in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTableModel
ShowAboutProtegeOWLAction - Class in edu.stanford.smi.protegex.owl.ui.actions
ShowAboutProtegeOWLAction() - Constructor for class edu.stanford.smi.protegex.owl.ui.actions.ShowAboutProtegeOWLAction
showAllTestsPassedMessage(int) - Method in class edu.stanford.smi.protegex.owl.ui.testing.AbstractOWLTestAction
showAllTestsPassedMessage(int) - Method in class edu.stanford.smi.protegex.owl.ui.testing.ShowTodoListAction
showClass(RDFSNamedClass) - Method in class edu.stanford.smi.protegex.owl.ui.cls.OWLClassesTab
showCls(Cls) - Method in class edu.stanford.smi.protegex.owl.ui.cls.OWLClassesTab
  Deprecated.
showConfirmCancelDialog(OWLModel, String, String) - Method in class edu.stanford.smi.protegex.owl.ui.dialogs.DefaultModalDialogFactory
showConfirmCancelDialog(Component, String, String) - Method in class edu.stanford.smi.protegex.owl.ui.dialogs.DefaultModalDialogFactory
showConfirmCancelDialog(OWLModel, String, String) - Method in interface edu.stanford.smi.protegex.owl.ui.dialogs.ModalDialogFactory
showConfirmCancelDialog(Component, String, String) - Method in interface edu.stanford.smi.protegex.owl.ui.dialogs.ModalDialogFactory
  Shows a dialog with Yes, No, and Cancel options.
showConfirmDialog(OWLModel, String, String) - Method in class edu.stanford.smi.protegex.owl.ui.dialogs.DefaultModalDialogFactory
showConfirmDialog(Component, String, String) - Method in class edu.stanford.smi.protegex.owl.ui.dialogs.DefaultModalDialogFactory
showConfirmDialog(OWLModel, String, String) - Method in interface edu.stanford.smi.protegex.owl.ui.dialogs.ModalDialogFactory
showConfirmDialog(Component, String, String) - Method in interface edu.stanford.smi.protegex.owl.ui.dialogs.ModalDialogFactory
showConfirmDialog(String, String) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.OWLUI
  Deprecated. use ProtegeUI.getModalDialogFactory()...
showConfirmDialog(Project, String, String) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.OWLUI
  Deprecated. use ProtegeUI.getModalDialogFactory()...
showCreateDialog(Component, RDFSClass, Cls, RDFProperty) - Static method in class edu.stanford.smi.protegex.owl.ui.restrictions.RestrictionEditorPanel
showCreateDialog(Component, RDFSClass, Cls, RDFProperty, String) - Static method in class edu.stanford.smi.protegex.owl.ui.restrictions.RestrictionEditorPanel
showCreateDialog(Component, RDFSClass, Cls) - Static method in class edu.stanford.smi.protegex.owl.ui.restrictions.RestrictionEditorPanel
showDialog(Component, Component, String, int) - Method in class edu.stanford.smi.protegex.owl.ui.dialogs.AbstractModalDialogFactory
showDialog(Component, Component, String, int, ModalDialogFactory.CloseCallback) - Method in class edu.stanford.smi.protegex.owl.ui.dialogs.AbstractModalDialogFactory
showDialog(Component, Component, String, int, ModalDialogFactory.CloseCallback, boolean) - Method in class edu.stanford.smi.protegex.owl.ui.dialogs.AbstractModalDialogFactory
showDialog(Component, Component, String, int, Component) - Method in class edu.stanford.smi.protegex.owl.ui.dialogs.AbstractModalDialogFactory
showDialog(Component, Component, String, int, ModalDialogFactory.CloseCallback, boolean, Component) - Method in class edu.stanford.smi.protegex.owl.ui.dialogs.DefaultModalDialogFactory
showDialog(Component, Component, String, int) - Method in interface edu.stanford.smi.protegex.owl.ui.dialogs.ModalDialogFactory
showDialog(Component, Component, String, int, ModalDialogFactory.CloseCallback) - Method in interface edu.stanford.smi.protegex.owl.ui.dialogs.ModalDialogFactory
showDialog(Component, Component, String, int, ModalDialogFactory.CloseCallback, boolean) - Method in interface edu.stanford.smi.protegex.owl.ui.dialogs.ModalDialogFactory
showDialog(Component, Component, String, int, ModalDialogFactory.CloseCallback, boolean, Component) - Method in interface edu.stanford.smi.protegex.owl.ui.dialogs.ModalDialogFactory
showDialog(Component, Component, String, int, Component) - Method in interface edu.stanford.smi.protegex.owl.ui.dialogs.ModalDialogFactory
showDialog(OWLModel) - Static method in class edu.stanford.smi.protegex.owl.ui.importstree.ImportsTreePanel
showDialog(OWLModel) - Static method in class edu.stanford.smi.protegex.owl.ui.metadatatab.imports.CreateImportedTripleStorePanel
showDialog(Component, OWLModel, Collection) - Static method in class edu.stanford.smi.protegex.owl.ui.metadatatab.imports.wizard.AddedPrefixesTable
showDialog(Component) - Static method in class edu.stanford.smi.protegex.owl.ui.metadatatab.OntologyURIDefaultSettingsPanel
showDialog(Component, OWLModel) - Static method in class edu.stanford.smi.protegex.owl.ui.repository.RepositoryManagerPanel
showDialog(Component, RDFSNamedClass) - Static method in class edu.stanford.smi.protegex.owl.ui.search.SearchNamedClassPanel
showDialog(OWLModel) - Static method in class edu.stanford.smi.protegex.owl.ui.triplestore.SplitClassesIntoImportedTripleStorePanel
showDialog(OWLModel) - Static method in class edu.stanford.smi.protegex.owl.ui.triplestore.TripleStoreSelectionPanel
showEditDialog(Component, OWLModel, SWRLImp) - Static method in class edu.stanford.smi.protegex.owl.swrl.ui.code.SWRLTextAreaPanel
showEditDialog(Component, OWLModel, RDFSClass) - Static method in class edu.stanford.smi.protegex.owl.ui.code.OWLTextAreaPanel
showErrorMessageDialog(OWLModel, String) - Method in class edu.stanford.smi.protegex.owl.ui.dialogs.AbstractModalDialogFactory
showErrorMessageDialog(Component, String) - Method in class edu.stanford.smi.protegex.owl.ui.dialogs.AbstractModalDialogFactory
showErrorMessageDialog(OWLModel, String, String) - Method in class edu.stanford.smi.protegex.owl.ui.dialogs.DefaultModalDialogFactory
showErrorMessageDialog(Component, String, String) - Method in class edu.stanford.smi.protegex.owl.ui.dialogs.DefaultModalDialogFactory
showErrorMessageDialog(OWLModel, String) - Method in interface edu.stanford.smi.protegex.owl.ui.dialogs.ModalDialogFactory
showErrorMessageDialog(OWLModel, String, String) - Method in interface edu.stanford.smi.protegex.owl.ui.dialogs.ModalDialogFactory
showErrorMessageDialog(Component, String) - Method in interface edu.stanford.smi.protegex.owl.ui.dialogs.ModalDialogFactory
showErrorMessageDialog(Component, String, String) - Method in interface edu.stanford.smi.protegex.owl.ui.dialogs.ModalDialogFactory
showErrorMessageDialog(String) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.OWLUI
  Deprecated. use ProtegeUI.getModalDialogFactory()...
showErrorMessageDialog(Component, String) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.OWLUI
  Deprecated. use ProtegeUI.getModalDialogFactory()...
showErrorMessageDialog(Project, String) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.OWLUI
  Deprecated. use ProtegeUI.getModalDialogFactory()...
showErrorMessageDialog(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.OWLUI
  Deprecated. use ProtegeUI.getModalDialogFactory()...
showErrorMessageDialog(String, String) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.OWLUI
  Deprecated. use ProtegeUI.getModalDialogFactory()...
showErrorMessageDialog(Project, String, String) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.OWLUI
  Deprecated. use ProtegeUI.getModalDialogFactory()...
showHidden() - Method in class edu.stanford.smi.protegex.owl.ui.cls.AssertedClassesPanel
showHostInstance(Instance) - Method in class edu.stanford.smi.protegex.owl.ui.results.ResultsPanel
  Deprecated. use showHostResource
showHostInstance(Instance) - Static method in class edu.stanford.smi.protegex.owl.ui.results.ResultsPanelManager
  Deprecated. use showHostResource instead
showHostResource(RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.results.ResultsPanel
showHostResource(RDFResource) - Static method in class edu.stanford.smi.protegex.owl.ui.results.ResultsPanelManager
showInferred() - Method in class edu.stanford.smi.protegex.owl.ui.cls.AssertedClassesPanel
showInferredConditions() - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsWidget
showInferredHierarchy(boolean) - Method in class edu.stanford.smi.protegex.owl.inference.ui.ReasonerActionRunner
  Displays the inferred hierarchy and the classifier results panel.
showInferredHierarchy() - Method in interface edu.stanford.smi.protegex.owl.ui.cls.HierarchiesHost
showInferredHierarchy(OWLModel) - Method in class edu.stanford.smi.protegex.owl.ui.cls.HierarchiesPanel
showInferredHierarchy() - Method in class edu.stanford.smi.protegex.owl.ui.cls.OWLClassesTab
showInputDialog(OWLModel, String, String) - Method in class edu.stanford.smi.protegex.owl.ui.dialogs.DefaultModalDialogFactory
showInputDialog(Component, String, String) - Method in class edu.stanford.smi.protegex.owl.ui.dialogs.DefaultModalDialogFactory
showInputDialog(OWLModel, String, String) - Method in interface edu.stanford.smi.protegex.owl.ui.dialogs.ModalDialogFactory
showInputDialog(Component, String, String) - Method in interface edu.stanford.smi.protegex.owl.ui.dialogs.ModalDialogFactory
showInstance(Instance) - Method in class edu.stanford.smi.protegex.owl.ui.cls.AssertedClassesPanel
showMessageDialog(OWLModel, String) - Method in class edu.stanford.smi.protegex.owl.ui.dialogs.AbstractModalDialogFactory
showMessageDialog(Component, String) - Method in class edu.stanford.smi.protegex.owl.ui.dialogs.AbstractModalDialogFactory
showMessageDialog(OWLModel, String, String) - Method in class edu.stanford.smi.protegex.owl.ui.dialogs.DefaultModalDialogFactory
showMessageDialog(Component, String, String) - Method in class edu.stanford.smi.protegex.owl.ui.dialogs.DefaultModalDialogFactory
showMessageDialog(OWLModel, String) - Method in interface edu.stanford.smi.protegex.owl.ui.dialogs.ModalDialogFactory
showMessageDialog(OWLModel, String, String) - Method in interface edu.stanford.smi.protegex.owl.ui.dialogs.ModalDialogFactory
showMessageDialog(Component, String) - Method in interface edu.stanford.smi.protegex.owl.ui.dialogs.ModalDialogFactory
showMessageDialog(Component, String, String) - Method in interface edu.stanford.smi.protegex.owl.ui.dialogs.ModalDialogFactory
showMessageDialog(String) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.OWLUI
  Deprecated. use ProtegeUI.getModalDialogFactory()...
showMessageDialog(Component, String) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.OWLUI
  Deprecated. use ProtegeUI.getModalDialogFactory()...
showMessageDialog(OWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.OWLUI
  Deprecated. use ProtegeUI.getModalDialogFactory()...
showMessageDialog(Project, String) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.OWLUI
  Deprecated. use ProtegeUI.getModalDialogFactory()...
showMessageDialog(String, String, int) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.OWLUI
  Deprecated. use ProtegeUI.getModalDialogFactory()...
showMessageDialog(OWLModel, String, String, int) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.OWLUI
  Deprecated. use ProtegeUI.getModalDialogFactory()...
showMessageDialog(Project, String, String, int) - Static method in class edu.stanford.smi.protegex.owl.ui.widget.OWLUI
  Deprecated. use ProtegeUI.getModalDialogFactory()...
ShowMetricsAction - Class in edu.stanford.smi.protegex.owl.ui.metrics
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Aug 31, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
ShowMetricsAction() - Constructor for class edu.stanford.smi.protegex.owl.ui.metrics.ShowMetricsAction
showNextPage() - Method in class edu.stanford.smi.protegex.owl.ui.wizard.OWLWizard
showOWLTestSettingsDialog(OWLModel) - Static method in class edu.stanford.smi.protegex.owl.ui.testing.OWLTestSettingsPanel
showPlugin(String, SWRLTab, OWLModel) - Static method in class edu.stanford.smi.protegex.owl.swrl.P3SWRLTabPluginManager
showPopup(OWLNamedClass) - Method in class edu.stanford.smi.protegex.owl.ui.conditions.PropertySuggestionPopup
  Shows a popup that appears next to the conditions widget table.
showPreviousPage() - Method in class edu.stanford.smi.protegex.owl.ui.wizard.OWLWizard
showProfilePanelDialog(OWLModel) - Static method in class edu.stanford.smi.protegex.owl.ui.profiles.EditProfilePanel
showProfilePanelDialog(OWLModel, OntModel) - Static method in class edu.stanford.smi.protegex.owl.ui.profiles.EditProfilePanel
showProfilePanelDialog(OWLModel, OntModel, String) - Static method in class edu.stanford.smi.protegex.owl.ui.profiles.EditProfilePanel
showPropertyWindow() - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTable
showQuotes - Variable in class edu.stanford.smi.protegex.owl.ui.ResourceRenderer
ShowReasonerInspectorAction - Class in edu.stanford.smi.protegex.owl.inference.ui.inspector
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Sep 15, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
ShowReasonerInspectorAction() - Constructor for class edu.stanford.smi.protegex.owl.inference.ui.inspector.ShowReasonerInspectorAction
ShowRepositoryEditorAction - Class in edu.stanford.smi.protegex.owl.ui.repository
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Sep 18, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
ShowRepositoryEditorAction() - Constructor for class edu.stanford.smi.protegex.owl.ui.repository.ShowRepositoryEditorAction
showResource(RDFResource) - Method in class edu.stanford.smi.protegex.owl.ui.components.AbstractPropertyValuesComponent
showResults(AbstractFindResultsView) - Method in class edu.stanford.smi.protegex.owl.ui.search.finder.FindInDialogAction
showResults(AbstractFindResultsView) - Method in class edu.stanford.smi.protegex.owl.ui.search.finder.FindInPanelAction
showResults(List, OWLModel) - Method in class edu.stanford.smi.protegex.owl.ui.testing.AbstractOWLTestAction
showSymbolPanel(boolean) - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTable
showSymbolPanel(boolean) - Method in class edu.stanford.smi.protegex.owl.ui.owltable.SymbolTable
showThrowable(OWLModel, Throwable) - Method in class edu.stanford.smi.protegex.owl.ui.dialogs.AbstractModalDialogFactory
showThrowable(OWLModel, Throwable) - Method in interface edu.stanford.smi.protegex.owl.ui.dialogs.ModalDialogFactory
ShowTodoListAction - Class in edu.stanford.smi.protegex.owl.ui.testing
ShowTodoListAction() - Constructor for class edu.stanford.smi.protegex.owl.ui.testing.ShowTodoListAction
showTriple(Triple) - Method in class edu.stanford.smi.protegex.owl.ui.results.ResultsPanel
showTriple(Triple) - Static method in class edu.stanford.smi.protegex.owl.ui.results.ResultsPanelManager
showWarning - Static variable in class edu.stanford.smi.protegex.owl.ui.cls.SwitchClassDefinitionResourceDisplayPlugin
SIBLING_CLASS - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
simpleFrameStore - Variable in class edu.stanford.smi.protegex.owl.jena.parser.AbstractStatefulTripleProcessor
SIN - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLConstants.BuiltIns
  Deprecated.
SIN - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.CoreBuiltIns
SINGLE_LINE_COMMENT - Static variable in interface edu.stanford.smi.protegex.owl.model.classparser.compact.CompactParserConstants
SINGLE_LINE_COMMENT - Static variable in interface edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxParserConstants
SINGLE_QUOTE_STRING - Static variable in class edu.stanford.smi.protegex.owl.model.classparser.ParserUtils
SingleAssertedSuperclassTest - Class in edu.stanford.smi.protegex.owl.testing.style
  Normalisation rule - classes should only have a single asserted named superclass, i.e., be a pure tree
SingleAssertedSuperclassTest() - Constructor for class edu.stanford.smi.protegex.owl.testing.style.SingleAssertedSuperclassTest
SingleLiteralAreaComponent - Class in edu.stanford.smi.protegex.owl.ui.components.singleliteral
SingleLiteralAreaComponent(RDFProperty) - Constructor for class edu.stanford.smi.protegex.owl.ui.components.singleliteral.SingleLiteralAreaComponent
SingleLiteralAreaComponent(RDFProperty, String) - Constructor for class edu.stanford.smi.protegex.owl.ui.components.singleliteral.SingleLiteralAreaComponent
SingleLiteralAreaComponent(RDFProperty, String, boolean) - Constructor for class edu.stanford.smi.protegex.owl.ui.components.singleliteral.SingleLiteralAreaComponent
SingleLiteralAreaWidget - Class in edu.stanford.smi.protegex.owl.ui.widget
SingleLiteralAreaWidget() - Constructor for class edu.stanford.smi.protegex.owl.ui.widget.SingleLiteralAreaWidget
SingleLiteralAreaWidgetMetadata - Class in edu.stanford.smi.protegex.owl.ui.widget
SingleLiteralAreaWidgetMetadata() - Constructor for class edu.stanford.smi.protegex.owl.ui.widget.SingleLiteralAreaWidgetMetadata
SingleLiteralComponent - Class in edu.stanford.smi.protegex.owl.ui.components.singleliteral
SingleLiteralComponent(RDFProperty) - Constructor for class edu.stanford.smi.protegex.owl.ui.components.singleliteral.SingleLiteralComponent
SingleLiteralComponent(RDFProperty, String) - Constructor for class edu.stanford.smi.protegex.owl.ui.components.singleliteral.SingleLiteralComponent
SingleLiteralComponent(RDFProperty, String, boolean) - Constructor for class edu.stanford.smi.protegex.owl.ui.components.singleliteral.SingleLiteralComponent
SingleLiteralWidget - Static variable in class edu.stanford.smi.protegex.owl.ui.forms.ProtegeFormsNames
SingleLiteralWidget - Class in edu.stanford.smi.protegex.owl.ui.widget
SingleLiteralWidget() - Constructor for class edu.stanford.smi.protegex.owl.ui.widget.SingleLiteralWidget
SingleLiteralWidgetMetadata - Class in edu.stanford.smi.protegex.owl.ui.widget
SingleLiteralWidgetMetadata() - Constructor for class edu.stanford.smi.protegex.owl.ui.widget.SingleLiteralWidgetMetadata
SingleResourceComponent - Class in edu.stanford.smi.protegex.owl.ui.components.singleresource
SingleResourceComponent(RDFProperty) - Constructor for class edu.stanford.smi.protegex.owl.ui.components.singleresource.SingleResourceComponent
SingleResourceComponent(RDFProperty, String) - Constructor for class edu.stanford.smi.protegex.owl.ui.components.singleresource.SingleResourceComponent
SingleResourceComponent(RDFProperty, String, boolean) - Constructor for class edu.stanford.smi.protegex.owl.ui.components.singleresource.SingleResourceComponent
SingleResourceWidget - Static variable in class edu.stanford.smi.protegex.owl.ui.forms.ProtegeFormsNames
SingleResourceWidget - Class in edu.stanford.smi.protegex.owl.ui.widget
  A widget that allows users to create or select an RDFResource as the (single) value of a property.
SingleResourceWidget() - Constructor for class edu.stanford.smi.protegex.owl.ui.widget.SingleResourceWidget
SingleResourceWidgetMetadata - Class in edu.stanford.smi.protegex.owl.ui.widget
SingleResourceWidgetMetadata() - Constructor for class edu.stanford.smi.protegex.owl.ui.widget.SingleResourceWidgetMetadata
size() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFList
size() - Method in interface edu.stanford.smi.protegex.owl.model.RDFList
Size - Static variable in class edu.stanford.smi.protegex.owl.swrl.model.SQWRLNames
sizeAccurate() - Method in class edu.stanford.smi.protegex.owl.jena.graph.ProtegeCapabilities
slotCreated(KnowledgeBaseEvent) - Method in class edu.stanford.smi.protegex.owl.model.event.ModelAdapter
  Deprecated.
slotCreated(KnowledgeBaseEvent) - Method in interface edu.stanford.smi.protegex.owl.model.event.ProtegeKnowledgeBaseListener
  Deprecated.
slotDeleted(KnowledgeBaseEvent) - Method in class edu.stanford.smi.protegex.owl.model.event.ModelAdapter
  Deprecated.
slotDeleted(KnowledgeBaseEvent) - Method in interface edu.stanford.smi.protegex.owl.model.event.ProtegeKnowledgeBaseListener
  Deprecated.
SMALL_BUTTON_WIDTH - Static variable in class edu.stanford.smi.protegex.owl.ui.resourcedisplay.ResourceDisplay
SOME - Static variable in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGVocabulary.Language
SOME - Static variable in interface edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParserConstants
SOME_VALUES_FROM - Static variable in interface edu.stanford.smi.protegex.owl.model.OWLNames.Slot
SOME_VALUES_FROM_RESTRICTION - Static variable in interface edu.stanford.smi.protegex.owl.model.OWLNames.Cls
SomeValuesFrom_Restrictions - Static variable in class edu.stanford.smi.protegex.owl.ui.profiles.OWLProfiles
SORT_ALPHABETICALLY_PROPERTY - Static variable in class edu.stanford.smi.protegex.owl.writer.rdfxml.util.ProtegeWriterSettings
SORT_BY_CHANGE - Static variable in class edu.stanford.smi.protegex.owl.ui.subsumption.ChangedClassesPanel
SORT_BY_CLASS - Static variable in class edu.stanford.smi.protegex.owl.ui.subsumption.ChangedClassesPanel
SORT_CLASS_TREE_AFTER_LOAD - Static variable in class edu.stanford.smi.protegex.owl.ui.widget.OWLUI
SortableMatrixColumn - Interface in edu.stanford.smi.protegex.owl.ui.matrix
  A MatrixColumn that can be defined as a sort criteria.
sortClassificationResults() - Method in class edu.stanford.smi.protegex.owl.ui.subsumption.ChangedClassesPanel
sortPropertyValues(RDFResource, RDFProperty, Comparator) - Method in class edu.stanford.smi.protegex.owl.model.triplestore.impl.TripleStoreImpl
sortPropertyValues(RDFResource, RDFProperty, Comparator) - Method in interface edu.stanford.smi.protegex.owl.model.triplestore.TripleStore
sortSlotValues(NarrowFrameStore, Instance, Slot, Comparator) - Static method in class edu.stanford.smi.protegex.owl.model.triplestore.TripleStoreUtil
sortSubclasses(Cls) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
sortSubclasses(OWLModel) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
sortSubclasses(OWLModel) - Static method in class edu.stanford.smi.protegex.owl.model.triplestore.TripleStoreUtil
SortSubclassesAction - Class in edu.stanford.smi.protegex.owl.ui.cls
SortSubclassesAction() - Constructor for class edu.stanford.smi.protegex.owl.ui.cls.SortSubclassesAction
SortSubclassesTreeAction - Class in edu.stanford.smi.protegex.owl.ui.cls
SortSubclassesTreeAction() - Constructor for class edu.stanford.smi.protegex.owl.ui.cls.SortSubclassesTreeAction
SOURCE_CODE - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
SourceCodeAction - Class in edu.stanford.smi.protegex.owl.ui.menu.code
  An Action to display a SourceCodeDialog.
SourceCodeAction() - Constructor for class edu.stanford.smi.protegex.owl.ui.menu.code.SourceCodeAction
SourceCodePanel - Class in edu.stanford.smi.protegex.owl.ui.menu.code
  A JDialog displaying the active triplestore RDF/XML rendering
SourceCodePanel(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.ui.menu.code.SourceCodePanel
SPARQL - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
SPARQL_RESULTS_PANEL - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
SPARQLAssertTest - Class in edu.stanford.smi.protegex.owl.testing.constraints
SPARQLAssertTest() - Constructor for class edu.stanford.smi.protegex.owl.testing.constraints.SPARQLAssertTest
SPARQLOWLModelAction - Class in edu.stanford.smi.protegex.owl.ui.query
SPARQLOWLModelAction() - Constructor for class edu.stanford.smi.protegex.owl.ui.query.SPARQLOWLModelAction
SPARQLQueryPanel - Class in edu.stanford.smi.protegex.owl.ui.query
SPARQLQueryPanel(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.ui.query.SPARQLQueryPanel
SPARQLQueryResults - Class in edu.stanford.smi.protegex.owl.model.query
SPARQLQueryResults(OWLModel, Query, ResultSet) - Constructor for class edu.stanford.smi.protegex.owl.model.query.SPARQLQueryResults
SPARQLResultsPanel - Class in edu.stanford.smi.protegex.owl.ui.query
SPARQLResultsPanel(OWLModel, boolean) - Constructor for class edu.stanford.smi.protegex.owl.ui.query.SPARQLResultsPanel
spawnHierarchy(Hierarchy) - Method in class edu.stanford.smi.protegex.owl.ui.cls.HierarchiesPanel
spawnHierarchy(Hierarchy) - Method in interface edu.stanford.smi.protegex.owl.ui.cls.HierarchyManager
specialConstructor - Variable in exception edu.stanford.smi.protegex.owl.model.classparser.compact.ParseException
  This variable determines which constructor was used to create this object and thereby affects the semantics of the "getMessage" method (see below).
specialConstructor - Variable in exception edu.stanford.smi.protegex.owl.model.classparser.dl.ParseException
  This variable determines which constructor was used to create this object and thereby affects the semantics of the "getMessage" method (see below).
specialConstructor - Variable in exception edu.stanford.smi.protegex.owl.model.classparser.manchester.ParseException
  This variable determines which constructor was used to create this object and thereby affects the semantics of the "getMessage" method (see below).
specialToken - Variable in class edu.stanford.smi.protegex.owl.model.classparser.compact.Token
  This field is used to access special tokens that occur prior to this token, but after the immediately preceding regular (non-special) token.
specialToken - Variable in class edu.stanford.smi.protegex.owl.model.classparser.dl.Token
  This field is used to access special tokens that occur prior to this token, but after the immediately preceding regular (non-special) token.
specialToken - Variable in class edu.stanford.smi.protegex.owl.model.classparser.manchester.Token
  This field is used to access special tokens that occur prior to this token, but after the immediately preceding regular (non-special) token.
SplitClassesIntoImportedTripleStorePanel - Class in edu.stanford.smi.protegex.owl.ui.triplestore
SplitClassesIntoImportedTripleStorePanel(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.ui.triplestore.SplitClassesIntoImportedTripleStorePanel
splitEncodedNamespaceEntry(String) - Static method in class edu.stanford.smi.protegex.owl.model.factory.FactoryUtils
SQL_GET_TABLE_TYPES_TABLE_TYPE_COL - Variable in class edu.stanford.smi.protegex.owl.repository.impl.DatabaseRepository
SQL_GET_TABLES_TABLENAME_COL - Variable in class edu.stanford.smi.protegex.owl.repository.impl.DatabaseRepository
SQL_TABLE_TYPE - Static variable in class edu.stanford.smi.protegex.owl.repository.impl.DatabaseRepository
SQL_VIEW_TYPE - Static variable in class edu.stanford.smi.protegex.owl.repository.impl.DatabaseRepository
SQWRL_IMPORT - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames
SQWRL_NAMESPACE - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames
SQWRL_PREFIX - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames
SQWRLBuiltInLibraryName - Static variable in class edu.stanford.smi.protegex.owl.swrl.model.SQWRLNames
SQWRLIcons - Class in edu.stanford.smi.protegex.owl.swrl.ui.icons
SQWRLIcons() - Constructor for class edu.stanford.smi.protegex.owl.swrl.ui.icons.SQWRLIcons
SQWRLNames - Class in edu.stanford.smi.protegex.owl.swrl.model
SQWRLNames() - Constructor for class edu.stanford.smi.protegex.owl.swrl.model.SQWRLNames
SQWRLNamespace - Static variable in class edu.stanford.smi.protegex.owl.swrl.model.SQWRLNames
SQWRLPrefix - Static variable in class edu.stanford.smi.protegex.owl.swrl.model.SQWRLNames
standardizePrefixes(OntModel) - Static method in class edu.stanford.smi.protegex.owl.jena.JenaNormalizer
start() - Method in interface edu.stanford.smi.protegex.owl.jena.creator.ProgressDisplay
start() - Method in class edu.stanford.smi.protegex.owl.ui.widget.ModalProgressBarManager
startDocument(String) - Method in class edu.stanford.smi.protegex.owl.writer.xml.DefaultXMLWriter
startDocument(String) - Method in interface edu.stanford.smi.protegex.owl.writer.xml.XMLWriter
  Starts writing the document.
startEditingAtPath(TreePath) - Method in class edu.stanford.smi.protegex.owl.ui.clsproperties.PropertyRestrictionsTree
startJournaling(URI) - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not needed
STARTS_WITH - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLConstants.BuiltIns
  Deprecated.
STARTS_WITH - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.CoreBuiltIns
STARTS_WITH - Static variable in interface edu.stanford.smi.protegex.owl.ui.search.finder.Find
startSearch(String) - Method in class edu.stanford.smi.protegex.owl.ui.search.finder.BasicFind
startSearch(String, int) - Method in class edu.stanford.smi.protegex.owl.ui.search.finder.BasicFind
startSearch(String) - Method in interface edu.stanford.smi.protegex.owl.ui.search.finder.Find
startSearch(String, int) - Method in interface edu.stanford.smi.protegex.owl.ui.search.finder.Find
  This method should start the search.
startSearch(String, int) - Method in class edu.stanford.smi.protegex.owl.ui.search.finder.ThreadedFind
  Starts the search.
startSynchronize() - Method in class edu.stanford.smi.protegex.owl.ui.cls.SecondaryHierarchyPanel
STATEMENT - Static variable in interface edu.stanford.smi.protegex.owl.model.RDFNames.Cls
StatementPattern - Static variable in class edu.stanford.smi.protegex.owl.ui.profiles.OWLProfiles
staticFlag - Static variable in class edu.stanford.smi.protegex.owl.model.classparser.compact.JavaCharStream
staticFlag - Static variable in class edu.stanford.smi.protegex.owl.model.classparser.dl.JavaCharStream
staticFlag - Static variable in class edu.stanford.smi.protegex.owl.model.classparser.manchester.JavaCharStream
stop() - Method in interface edu.stanford.smi.protegex.owl.jena.creator.ProgressDisplay
stop() - Method in class edu.stanford.smi.protegex.owl.ui.widget.ModalProgressBarManager
stopCalculating() - Method in class edu.stanford.smi.protegex.owl.model.util.ModelMetrics
stopEditing() - Method in class edu.stanford.smi.protegex.owl.ui.code.SymbolCellEditor
stopEditing() - Method in interface edu.stanford.smi.protegex.owl.ui.code.SymbolEditorHandler
stopEditing() - Method in class edu.stanford.smi.protegex.owl.ui.code.SymbolTextField
stopEditing() - Method in class edu.stanford.smi.protegex.owl.ui.components.literaltable.LiteralTable
stopEditing() - Method in class edu.stanford.smi.protegex.owl.ui.restrictions.FillerTextArea
stopJournaling() - Method in interface edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase
  Deprecated. not needed
stopSynchronize() - Method in class edu.stanford.smi.protegex.owl.ui.cls.SecondaryHierarchyPanel
STRING - Static variable in interface edu.stanford.smi.protegex.owl.model.XSDNames
String - Static variable in class edu.stanford.smi.protegex.owl.ui.forms.FormsNames
STRING_CONCAT - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLConstants.BuiltIns
  Deprecated.
STRING_CONCAT - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.CoreBuiltIns
STRING_EQUAL_IGNORE_CASE - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.CoreBuiltIns
STRING_EQUALS - Static variable in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGVocabulary.Language
STRING_LENGTH - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.CoreBuiltIns
STRING_LITERAL - Static variable in interface edu.stanford.smi.protegex.owl.model.classparser.compact.CompactParserConstants
STRING_LITERAL - Static variable in interface edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxParserConstants
STRING_LITERAL - Static variable in interface edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParserConstants
string_value - Static variable in class edu.stanford.smi.protegex.owl.ui.forms.FormsNames
StringFacetsPanel - Class in edu.stanford.smi.protegex.owl.ui.properties.range
StringFacetsPanel(OWLRangeWidget) - Constructor for class edu.stanford.smi.protegex.owl.ui.properties.range.StringFacetsPanel
stringLength - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLConstants.BuiltIns
  Deprecated.
stringTypes - Static variable in class edu.stanford.smi.protegex.owl.model.impl.XMLSchemaDatatypes
StringValueEditor - Class in edu.stanford.smi.protegex.owl.ui.editors
StringValueEditor() - Constructor for class edu.stanford.smi.protegex.owl.ui.editors.StringValueEditor
stripQuery(String) - Static method in class edu.stanford.smi.protegex.owl.repository.util.RepositoryUtil
style - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
STYLE_DEFAULT - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
STYLE_MULTICOLORED - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
STYLE_VARIABLE - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
SUB_CLASS - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
SUB_CLASS_OF - Static variable in interface edu.stanford.smi.protegex.owl.model.RDFSNames.Slot
SUB_PROPERTY_OF - Static variable in interface edu.stanford.smi.protegex.owl.model.RDFSNames.Slot
subclassAdded(RDFSClass, RDFSClass, ClsEvent) - Method in class edu.stanford.smi.protegex.owl.model.event.ClassAdapter
subclassAdded(RDFSClass, RDFSClass) - Method in class edu.stanford.smi.protegex.owl.model.event.ClassAdapter
subclassAdded(RDFSClass, RDFSClass) - Method in interface edu.stanford.smi.protegex.owl.model.event.ClassListener
  Called after a class has been added as a subclass to another class.
SUBCLASSES_DISJOINT - Static variable in interface edu.stanford.smi.protegex.owl.model.OWLNames.Slot
SUBCLASSES_DISJOINT - Static variable in class edu.stanford.smi.protegex.owl.model.ProtegeNames
SubclassesMatrixAction - Class in edu.stanford.smi.protegex.owl.ui.matrix.cls
SubclassesMatrixAction() - Constructor for class edu.stanford.smi.protegex.owl.ui.matrix.cls.SubclassesMatrixAction
SubclassesMatrixFilter - Class in edu.stanford.smi.protegex.owl.ui.matrix.cls
SubclassesMatrixFilter(RDFSNamedClass) - Constructor for class edu.stanford.smi.protegex.owl.ui.matrix.cls.SubclassesMatrixFilter
SubclassesRestrictionDuplicatesThatOfSuperTest - Class in edu.stanford.smi.protegex.owl.testing.style
  Tests whether a subclass has a redundant restriction on it.
SubclassesRestrictionDuplicatesThatOfSuperTest() - Constructor for class edu.stanford.smi.protegex.owl.testing.style.SubclassesRestrictionDuplicatesThatOfSuperTest
subclassPane - Variable in class edu.stanford.smi.protegex.owl.ui.cls.AssertedClassesPanel
subclassRemoved(RDFSClass, RDFSClass, ClsEvent) - Method in class edu.stanford.smi.protegex.owl.model.event.ClassAdapter
subclassRemoved(RDFSClass, RDFSClass) - Method in class edu.stanford.smi.protegex.owl.model.event.ClassAdapter
subclassRemoved(RDFSClass, RDFSClass) - Method in interface edu.stanford.smi.protegex.owl.model.event.ClassListener
  Called after a class has been removed from the subclasses of another class.
SUBJECT - Static variable in interface edu.stanford.smi.protegex.owl.model.RDFNames.Slot
SUBLIST - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLConstants.BuiltIns
  Deprecated.
SubpropertiesMatrixAction - Class in edu.stanford.smi.protegex.owl.ui.matrix.property
SubpropertiesMatrixAction() - Constructor for class edu.stanford.smi.protegex.owl.ui.matrix.property.SubpropertiesMatrixAction
subpropertyAdded(RDFProperty, RDFProperty, SlotEvent) - Method in class edu.stanford.smi.protegex.owl.model.event.PropertyAdapter
subpropertyAdded(RDFProperty, RDFProperty) - Method in class edu.stanford.smi.protegex.owl.model.event.PropertyAdapter
subpropertyAdded(RDFProperty, RDFProperty) - Method in interface edu.stanford.smi.protegex.owl.model.event.PropertyListener
  Called after a subproperty has been added to a property.
SubpropertyDomainMustNarrowTest - Class in edu.stanford.smi.protegex.owl.testing.sanity
SubpropertyDomainMustNarrowTest() - Constructor for class edu.stanford.smi.protegex.owl.testing.sanity.SubpropertyDomainMustNarrowTest
SubpropertyRangeMustNarrowTest - Class in edu.stanford.smi.protegex.owl.testing.sanity
SubpropertyRangeMustNarrowTest() - Constructor for class edu.stanford.smi.protegex.owl.testing.sanity.SubpropertyRangeMustNarrowTest
subpropertyRemoved(RDFProperty, RDFProperty, SlotEvent) - Method in class edu.stanford.smi.protegex.owl.model.event.PropertyAdapter
subpropertyRemoved(RDFProperty, RDFProperty) - Method in class edu.stanford.smi.protegex.owl.model.event.PropertyAdapter
subpropertyRemoved(RDFProperty, RDFProperty) - Method in interface edu.stanford.smi.protegex.owl.model.event.PropertyListener
  Called after a subproperty has been removed from a property.
SUBSTRING - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLConstants.BuiltIns
  Deprecated.
SUBSTRING - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.CoreBuiltIns
SUBSTRING_AFTER - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLConstants.BuiltIns
  Deprecated.
SUBSTRING_AFTER - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.CoreBuiltIns
SUBSTRING_BEFORE - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLConstants.BuiltIns
  Deprecated.
SUBSTRING_BEFORE - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.CoreBuiltIns
SUBSTRINGS_REQUIRING_QUOTES - Static variable in class edu.stanford.smi.protegex.owl.model.classparser.ParserUtils
SUBSUMES - Static variable in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGVocabulary.Ask
SubsumptionTreeFinder - Class in edu.stanford.smi.protegex.owl.ui.subsumption
  Implementation of the Finder interface to locate and highlight classes whose names match a given string.
SubsumptionTreeFinder(KnowledgeBase, JTree, String, Slot) - Constructor for class edu.stanford.smi.protegex.owl.ui.subsumption.SubsumptionTreeFinder
SubsumptionTreeNode - Class in edu.stanford.smi.protegex.owl.ui.subsumption
  A LazyTreeNode for an inferred or asserted subsumption relationship between classes.
SubsumptionTreeNode(LazyTreeNode, Cls, Slot) - Constructor for class edu.stanford.smi.protegex.owl.ui.subsumption.SubsumptionTreeNode
SubsumptionTreePanel - Class in edu.stanford.smi.protegex.owl.ui.subsumption
  A component that displays the computed or asserted subsumption relationship between classes.
SubsumptionTreePanel(Cls, Slot, Slot, boolean) - Constructor for class edu.stanford.smi.protegex.owl.ui.subsumption.SubsumptionTreePanel
SubsumptionTreePanel(LazyTreeRoot, Slot, boolean) - Constructor for class edu.stanford.smi.protegex.owl.ui.subsumption.SubsumptionTreePanel
SubsumptionTreePanel(LazyTreeRoot, Slot, boolean, ResultsViewModelFind) - Constructor for class edu.stanford.smi.protegex.owl.ui.subsumption.SubsumptionTreePanel
SubsumptionTreePanel.SuperClsesPanel - Interface in edu.stanford.smi.protegex.owl.ui.subsumption
SubsumptionTreeRoot - Class in edu.stanford.smi.protegex.owl.ui.subsumption
  A LazyTreeRoot for a computed or asserted subsumption relationship between classes.
SubsumptionTreeRoot(Cls, Slot) - Constructor for class edu.stanford.smi.protegex.owl.ui.subsumption.SubsumptionTreeRoot
SUBTRACT - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLConstants.BuiltIns
  Deprecated.
SUBTRACT - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.CoreBuiltIns
SUBTRACT_DATE_TIME_DURATION_FROM_TIME - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLConstants.BuiltIns
  Deprecated.
SUBTRACT_DATE_TIME_YEILDING_DAY_TIME_DURATION - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLConstants.BuiltIns
  Deprecated.
SUBTRACT_DATE_TIME_YEILDING_YEAR_MONTH_DURATION - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLConstants.BuiltIns
  Deprecated.
SUBTRACT_DATES - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLConstants.BuiltIns
  Deprecated.
SUBTRACT_DATES - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.CoreBuiltIns
SUBTRACT_DATETIMES_YIELDING_DAY_TIME_DURATION - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.CoreBuiltIns
SUBTRACT_DATETIMES_YIELDING_YEAR_MONTH_DURATION - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.CoreBuiltIns
SUBTRACT_DAY_TIME_DURATION_FROM_DATE - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLConstants.BuiltIns
  Deprecated.
SUBTRACT_DAY_TIME_DURATION_FROM_DATE - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.CoreBuiltIns
SUBTRACT_DAY_TIME_DURATION_FROM_DATE_TIME - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLConstants.BuiltIns
  Deprecated.
SUBTRACT_DAY_TIME_DURATION_FROM_DATETIME - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.CoreBuiltIns
SUBTRACT_DAY_TIME_DURATION_FROM_TIME - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.CoreBuiltIns
SUBTRACT_DAY_TIME_DURATIONS - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLConstants.BuiltIns
  Deprecated.
SUBTRACT_DAY_TIME_DURATIONS - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.CoreBuiltIns
SUBTRACT_TIMES - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLConstants.BuiltIns
  Deprecated.
SUBTRACT_TIMES - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.CoreBuiltIns
SUBTRACT_YEAR_MONTH_DURATION_FROM_DATE - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLConstants.BuiltIns
  Deprecated.
SUBTRACT_YEAR_MONTH_DURATION_FROM_DATE - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.CoreBuiltIns
SUBTRACT_YEAR_MONTH_DURATION_FROM_DATE_TIME - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLConstants.BuiltIns
  Deprecated.
SUBTRACT_YEAR_MONTH_DURATION_FROM_DATETIME - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.CoreBuiltIns
SUBTRACT_YEAR_MONTH_DURATIONS - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLConstants.BuiltIns
  Deprecated.
SUBTRACT_YEAR_MONTH_DURATIONS - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.CoreBuiltIns
SUFFICIENT - Static variable in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTableItem
SUFFIX - Static variable in class edu.stanford.smi.protegex.owl.ui.forms.AbsoluteFormsGenerator
Suggestion - Interface in edu.stanford.smi.protegex.owl.ui.clsdesc.manchester
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Sep 7, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
SuggestionFactory - Class in edu.stanford.smi.protegex.owl.ui.clsdesc.manchester
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Sep 7, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
SuggestionFactory() - Constructor for class edu.stanford.smi.protegex.owl.ui.clsdesc.manchester.SuggestionFactory
SuggestionList - Class in edu.stanford.smi.protegex.owl.ui.clsdesc.manchester
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Sep 7, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
SuggestionList(SuggestionPopup) - Constructor for class edu.stanford.smi.protegex.owl.ui.clsdesc.manchester.SuggestionList
SuggestionPopup - Class in edu.stanford.smi.protegex.owl.ui.clsdesc.manchester
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Sep 7, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
SuggestionPopup(Window, OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.ui.clsdesc.manchester.SuggestionPopup
SuggestionRenderer - Class in edu.stanford.smi.protegex.owl.ui.clsdesc.manchester
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Sep 7, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
SuggestionRenderer() - Constructor for class edu.stanford.smi.protegex.owl.ui.clsdesc.manchester.SuggestionRenderer
SUITABILITY - Static variable in interface edu.stanford.smi.protegex.owl.ui.actions.OWLModelAction
SUITABLE - Static variable in interface edu.stanford.smi.protegex.owl.ui.widget.OWLWidgetMetadata
  Indicates that this widget is suitable (but not necessarily default) for the given class/property combination
Sum - Static variable in class edu.stanford.smi.protegex.owl.swrl.model.SQWRLNames
SumAggregateFunction - Static variable in class edu.stanford.smi.protegex.owl.swrl.model.SQWRLNames
SUPERCLASS - Static variable in class edu.stanford.smi.protegex.owl.ui.search.FindUsageTableItem
SUPERCLASS_EXPLORER - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
superclassAdded(RDFSClass, RDFSClass, ClsEvent) - Method in class edu.stanford.smi.protegex.owl.model.event.ClassAdapter
superclassAdded(RDFSClass, RDFSClass) - Method in class edu.stanford.smi.protegex.owl.model.event.ClassAdapter
superclassAdded(RDFSClass, RDFSClass) - Method in interface edu.stanford.smi.protegex.owl.model.event.ClassListener
  Called after a class has been added as a superclass to another class.
superclassesSlot - Variable in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTableModel
superclassHandlingBlocked - Variable in class edu.stanford.smi.protegex.owl.model.framestore.FacetUpdateFrameStore
  A flag to prevent infinite recursion when a facet override has been changed.
superclassRemoved(RDFSClass, RDFSClass, ClsEvent) - Method in class edu.stanford.smi.protegex.owl.model.event.ClassAdapter
superclassRemoved(RDFSClass, RDFSClass) - Method in class edu.stanford.smi.protegex.owl.model.event.ClassAdapter
superclassRemoved(RDFSClass, RDFSClass) - Method in interface edu.stanford.smi.protegex.owl.model.event.ClassListener
  Called after a class has been removed from the superclasses of another class.
SuperClsCache - Class in edu.stanford.smi.protegex.owl.jena.parser
SuperClsCache() - Constructor for class edu.stanford.smi.protegex.owl.jena.parser.SuperClsCache
superpropertyAdded(RDFProperty, RDFProperty, SlotEvent) - Method in class edu.stanford.smi.protegex.owl.model.event.PropertyAdapter
superpropertyAdded(RDFProperty, RDFProperty) - Method in class edu.stanford.smi.protegex.owl.model.event.PropertyAdapter
superpropertyAdded(RDFProperty, RDFProperty) - Method in interface edu.stanford.smi.protegex.owl.model.event.PropertyListener
  Called after a superproperty has been added to a property.
superpropertyRemoved(RDFProperty, RDFProperty, SlotEvent) - Method in class edu.stanford.smi.protegex.owl.model.event.PropertyAdapter
superpropertyRemoved(RDFProperty, RDFProperty) - Method in class edu.stanford.smi.protegex.owl.model.event.PropertyAdapter
superpropertyRemoved(RDFProperty, RDFProperty) - Method in interface edu.stanford.smi.protegex.owl.model.event.PropertyListener
  Called after a superproperty has been removed from a property.
supportsAskElement(String) - Method in class edu.stanford.smi.protegex.owl.inference.dig.reasoner.DIGReasonerIdentity
  Determines if the specified ask element is supported by the inference.
supportsLanguageElement(String) - Method in class edu.stanford.smi.protegex.owl.inference.dig.reasoner.DIGReasonerIdentity
  Determines if the specified language element is supported by the inference.
supportsTellElemement(String) - Method in class edu.stanford.smi.protegex.owl.inference.dig.reasoner.DIGReasonerIdentity
  Determines if the specified tell element is supported by the inference.
SUPPRESS_DUPLICATE_PROPERTY_VALUES - Static variable in class edu.stanford.smi.protegex.owl.model.triplestore.impl.TripleStoreModelImpl
SVAL - Static variable in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGVocabulary.Language
SwingListExample - Class in edu.stanford.smi.protegex.owlx.examples
SwingListExample() - Constructor for class edu.stanford.smi.protegex.owlx.examples.SwingListExample
SwitchableClassDefinitionWidget - Class in edu.stanford.smi.protegex.owl.ui.cls
  A MultiWidgetPropertyWidget used as main widget on the OWLClassesTab, showing one of various switchable displays (Logic view etc).
SwitchableClassDefinitionWidget() - Constructor for class edu.stanford.smi.protegex.owl.ui.cls.SwitchableClassDefinitionWidget
SwitchableType - Interface in edu.stanford.smi.protegex.owl.ui.cls
  An interface for factory objects that can register with the SwitchableClassDefinitionWidget to create the available options (Logic View, Properties View, etc).
SwitchClassDefinitionResourceDisplayPlugin - Class in edu.stanford.smi.protegex.owl.ui.cls
SwitchClassDefinitionResourceDisplayPlugin() - Constructor for class edu.stanford.smi.protegex.owl.ui.cls.SwitchClassDefinitionResourceDisplayPlugin
SwitchTo(int) - Method in class edu.stanford.smi.protegex.owl.model.classparser.compact.CompactParserTokenManager
SwitchTo(int) - Method in class edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxParserTokenManager
SwitchTo(int) - Method in class edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParserTokenManager
switchTripleStore(OWLModel, TripleStore) - Static method in class edu.stanford.smi.protegex.owl.model.triplestore.TripleStoreUtil
SWRL_ALT_IMPORT - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames
SWRL_FRAME_TYPE_ID_BASE - Static variable in enum edu.stanford.smi.protegex.owl.swrl.model.factory.SWRLFrameTypeId
SWRL_FRAME_TYPE_ID_END - Static variable in enum edu.stanford.smi.protegex.owl.swrl.model.factory.SWRLFrameTypeId
SWRL_IMPORT - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames
SWRL_NAMESPACE - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames
SWRL_PREFIX - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames
SWRLA_IMPORT - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames
SWRLA_NAMESPACE - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames
SWRLA_PREFIX - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames
SWRLABOX_IMPORT - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames
SWRLABOX_NAMESPACE - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames
SWRLABOX_PREFIX - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames
SWRLAtom - Interface in edu.stanford.smi.protegex.owl.swrl.model
  The base interface of the various atom types in SWRL.
SWRLAtomList - Interface in edu.stanford.smi.protegex.owl.swrl.model
SWRLB_ALT_IMPORT - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames
SWRLB_IMPORT - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames
SWRLB_NAMESPACE - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames
SWRLB_PREFIX - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames
SWRLBuiltin - Interface in edu.stanford.smi.protegex.owl.swrl.model
  An instance representing a SWRL builtin.
SWRLBuiltinAtom - Interface in edu.stanford.smi.protegex.owl.swrl.model
SWRLClassAtom - Interface in edu.stanford.smi.protegex.owl.swrl.model
SWRLConstants - Interface in edu.stanford.smi.protegex.owl.swrl.model
  Deprecated. Is this still needed?
SWRLConstants.BuiltIns - Interface in edu.stanford.smi.protegex.owl.swrl.model
  Deprecated.
SWRLDataRangeAtom - Interface in edu.stanford.smi.protegex.owl.swrl.model
SWRLDatavaluedPropertyAtom - Interface in edu.stanford.smi.protegex.owl.swrl.model
SWRLDifferentIndividualsAtom - Interface in edu.stanford.smi.protegex.owl.swrl.model
SWRLFactory - Class in edu.stanford.smi.protegex.owl.swrl.model
  A utility class that can (and should) be used to create and access SWRL related objects in an ontology.
SWRLFactory(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.swrl.model.SWRLFactory
SWRLFactoryException - Exception in edu.stanford.smi.protegex.owl.swrl.model
SWRLFactoryException(String) - Constructor for exception edu.stanford.smi.protegex.owl.swrl.model.SWRLFactoryException
SWRLFactoryException(String, Throwable) - Constructor for exception edu.stanford.smi.protegex.owl.swrl.model.SWRLFactoryException
SWRLFactoryTest - Class in edu.stanford.smi.protegex.owl.swrl.model.examples
SWRLFactoryTest() - Constructor for class edu.stanford.smi.protegex.owl.swrl.model.examples.SWRLFactoryTest
SWRLFrameTypeId - Enum in edu.stanford.smi.protegex.owl.swrl.model.factory
SWRLIcons - Class in edu.stanford.smi.protegex.owl.swrl.ui.icons
  A singleton that provides access to the SWRL specific icons.
SWRLIcons() - Constructor for class edu.stanford.smi.protegex.owl.swrl.ui.icons.SWRLIcons
SWRLImp - Interface in edu.stanford.smi.protegex.owl.swrl.model
SWRLIncompleteRuleException - Exception in edu.stanford.smi.protegex.owl.swrl.parser
SWRLIncompleteRuleException() - Constructor for exception edu.stanford.smi.protegex.owl.swrl.parser.SWRLIncompleteRuleException
SWRLIncompleteRuleException(String) - Constructor for exception edu.stanford.smi.protegex.owl.swrl.parser.SWRLIncompleteRuleException
SWRLIndividual - Interface in edu.stanford.smi.protegex.owl.swrl.model
  The common base interface of all SWRL related classes.
SWRLIndividualPropertyAtom - Interface in edu.stanford.smi.protegex.owl.swrl.model
SWRLIndividualsAtom - Interface in edu.stanford.smi.protegex.owl.swrl.model
SWRLJavaFactory - Class in edu.stanford.smi.protegex.owl.swrl.model.factory
SWRLJavaFactory(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.swrl.model.factory.SWRLJavaFactory
SWRLM_IMPORT - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames
SWRLM_NAMESPACE - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames
SWRLM_PREFIX - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames
SWRLNames - Interface in edu.stanford.smi.protegex.owl.swrl.model
  Defines the names of the SWRL system ontology classes and properties.
SWRLNames.Annotations - Interface in edu.stanford.smi.protegex.owl.swrl.model
SWRLNames.Cls - Interface in edu.stanford.smi.protegex.owl.swrl.model
SWRLNames.CoreBuiltIns - Interface in edu.stanford.smi.protegex.owl.swrl.model
SWRLNames.Slot - Interface in edu.stanford.smi.protegex.owl.swrl.model
SWRLParseException - Exception in edu.stanford.smi.protegex.owl.swrl.parser
SWRLParseException() - Constructor for exception edu.stanford.smi.protegex.owl.swrl.parser.SWRLParseException
SWRLParseException(String) - Constructor for exception edu.stanford.smi.protegex.owl.swrl.parser.SWRLParseException
SWRLParser - Class in edu.stanford.smi.protegex.owl.swrl.parser
SWRLParser(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.swrl.parser.SWRLParser
SWRLProjectPlugin - Class in edu.stanford.smi.protegex.owl.swrl.ui
  A Project Plugin that does some initialization after a SWRL project has been loaded.
SWRLProjectPlugin() - Constructor for class edu.stanford.smi.protegex.owl.swrl.ui.SWRLProjectPlugin
SWRLRDF - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames
SWRLRDF_IMPORT - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames
SWRLRDF_NAMESPACE - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames
SWRLResourceNameMatcher - Class in edu.stanford.smi.protegex.owl.swrl.ui.code
SWRLResourceNameMatcher() - Constructor for class edu.stanford.smi.protegex.owl.swrl.ui.code.SWRLResourceNameMatcher
SWRLResultsPanel - Class in edu.stanford.smi.protegex.owl.swrl.ui.table
SWRLResultsPanel(RDFResource) - Constructor for class edu.stanford.smi.protegex.owl.swrl.ui.table.SWRLResultsPanel
SWRLRuleSlotWidget - Class in edu.stanford.smi.protegex.owl.swrl.ui.widget
SWRLRuleSlotWidget() - Constructor for class edu.stanford.smi.protegex.owl.swrl.ui.widget.SWRLRuleSlotWidget
SWRLSameIndividualAtom - Interface in edu.stanford.smi.protegex.owl.swrl.model
SWRLSymbolEditor - Class in edu.stanford.smi.protegex.owl.swrl.ui.table
SWRLSymbolEditor(OWLModel, SymbolErrorDisplay) - Constructor for class edu.stanford.smi.protegex.owl.swrl.ui.table.SWRLSymbolEditor
SWRLSymbolPanel - Class in edu.stanford.smi.protegex.owl.swrl.ui.code
SWRLSymbolPanel(OWLModel, boolean, boolean) - Constructor for class edu.stanford.smi.protegex.owl.swrl.ui.code.SWRLSymbolPanel
SWRLSyntaxConverter - Class in edu.stanford.smi.protegex.owl.swrl.ui.code
SWRLSyntaxConverter(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.swrl.ui.code.SWRLSyntaxConverter
SWRLSystemFrames - Class in edu.stanford.smi.protegex.owl.swrl
SWRLSystemFrames(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.swrl.SWRLSystemFrames
SWRLSystemFrames.SWRLSystemFramesAssertions - Class in edu.stanford.smi.protegex.owl.swrl
SWRLSystemFrames.SWRLSystemFramesAssertions(FrameStore) - Constructor for class edu.stanford.smi.protegex.owl.swrl.SWRLSystemFrames.SWRLSystemFramesAssertions
SWRLTab - Class in edu.stanford.smi.protegex.owl.swrl.ui.tab
  A Protege-OWL tab widget that contains the SWRLTab GUI.
SWRLTab() - Constructor for class edu.stanford.smi.protegex.owl.swrl.ui.tab.SWRLTab
SWRLTable - Class in edu.stanford.smi.protegex.owl.swrl.ui.table
SWRLTable(SWRLTableModel, OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.swrl.ui.table.SWRLTable
SWRLTableModel - Class in edu.stanford.smi.protegex.owl.swrl.ui.table
SWRLTableModel(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.swrl.ui.table.SWRLTableModel
SWRLTableModel(RDFResource) - Constructor for class edu.stanford.smi.protegex.owl.swrl.ui.table.SWRLTableModel
SWRLTablePanel - Class in edu.stanford.smi.protegex.owl.swrl.ui.table
  A JPanel consisting of a SWRLTable and buttons to view, clone, create and delete rules.
SWRLTablePanel(OWLModel, RDFResource) - Constructor for class edu.stanford.smi.protegex.owl.swrl.ui.table.SWRLTablePanel
SWRLTablePanel(OWLModel, RDFResource, SWRLTab) - Constructor for class edu.stanford.smi.protegex.owl.swrl.ui.table.SWRLTablePanel
SWRLTBOX_IMPORT - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames
SWRLTBOX_NAMESPACE - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames
SWRLTBOX_PREFIX - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames
SWRLTEMPORAL_IMPORT - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames
SWRLTEMPORAL_NAMESPACE - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames
SWRLTEMPORAL_PREFIX - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames
SWRLTextArea - Class in edu.stanford.smi.protegex.owl.swrl.ui.code
  A SymbolTextArea with special support for editing SWRL expressions.
SWRLTextArea(OWLModel, SWRLSymbolPanel) - Constructor for class edu.stanford.smi.protegex.owl.swrl.ui.code.SWRLTextArea
SWRLTextAreaPanel - Class in edu.stanford.smi.protegex.owl.swrl.ui.code
  A panel which can be used to edit an OWL expression in a multi-line dialog.
SWRLTextAreaPanel(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.swrl.ui.code.SWRLTextAreaPanel
SWRLTextAreaPanel(OWLModel, SWRLImp) - Constructor for class edu.stanford.smi.protegex.owl.swrl.ui.code.SWRLTextAreaPanel
SWRLTextField - Class in edu.stanford.smi.protegex.owl.swrl.ui.code
  A SymbolTextField with special support for editing SWRL expressions.
SWRLTextField(OWLModel, SymbolErrorDisplay) - Constructor for class edu.stanford.smi.protegex.owl.swrl.ui.code.SWRLTextField
SWRLUtil - Class in edu.stanford.smi.protegex.owl.swrl.model.impl
SWRLUtil() - Constructor for class edu.stanford.smi.protegex.owl.swrl.model.impl.SWRLUtil
SWRLVariable - Interface in edu.stanford.smi.protegex.owl.swrl.model
SWRLX_IMPORT - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames
SWRLX_NAMESPACE - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames
SWRLX_PREFIX - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames
SWRLXML_IMPORT - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames
SWRLXML_NAMESPACE - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames
SWRLXML_PREFIX - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames
SYMBOL_COLUMN - Static variable in class edu.stanford.smi.protegex.owl.ui.metrics.lang.DLExpressivityTableModel
SymbolCellEditor - Class in edu.stanford.smi.protegex.owl.ui.code
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Sep 6, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
SymbolCellEditor(SymbolEditorComponent) - Constructor for class edu.stanford.smi.protegex.owl.ui.code.SymbolCellEditor
SymbolEditor - Interface in edu.stanford.smi.protegex.owl.ui.code
SymbolEditorComponent - Class in edu.stanford.smi.protegex.owl.ui.code
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Sep 6, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
SymbolEditorComponent(OWLModel, SymbolErrorDisplay, boolean) - Constructor for class edu.stanford.smi.protegex.owl.ui.code.SymbolEditorComponent
SymbolEditorHandler - Interface in edu.stanford.smi.protegex.owl.ui.code
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Sep 6, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
SymbolErrorDisplay - Interface in edu.stanford.smi.protegex.owl.ui.code
SymbolPanel - Class in edu.stanford.smi.protegex.owl.ui.code
  A JPanel hosting buttons that accelerate editing of OWL/SWRL expressions.
SymbolPanel(OWLModel, boolean) - Constructor for class edu.stanford.smi.protegex.owl.ui.code.SymbolPanel
SymbolPanel(OWLModel, boolean, boolean) - Constructor for class edu.stanford.smi.protegex.owl.ui.code.SymbolPanel
SymbolPanel(OWLModel, boolean, boolean, boolean) - Constructor for class edu.stanford.smi.protegex.owl.ui.code.SymbolPanel
SymbolTable - Class in edu.stanford.smi.protegex.owl.ui.owltable
  A JTable in which one column displays an expression in an expression language like the OWL compact syntax or SWRL.
SymbolTable(SymbolTableModel, OWLModel, boolean, SymbolPanel) - Constructor for class edu.stanford.smi.protegex.owl.ui.owltable.SymbolTable
SymbolTableModel - Interface in edu.stanford.smi.protegex.owl.ui.owltable
SymbolTextArea - Class in edu.stanford.smi.protegex.owl.ui.code
  A remake of OWLTextField, but with JTextArea as base class.
SymbolTextArea(OWLModel, SymbolErrorDisplay, ResourceNameMatcher, SyntaxConverter) - Constructor for class edu.stanford.smi.protegex.owl.ui.code.SymbolTextArea
SymbolTextField - Class in edu.stanford.smi.protegex.owl.ui.code
  A JTextField with special support for editing expressions in languages like the OWL compact syntax or SWRL.
SymbolTextField(OWLModel, SymbolErrorDisplay, ResourceNameMatcher, SyntaxConverter) - Constructor for class edu.stanford.smi.protegex.owl.ui.code.SymbolTextField
symmetric - Variable in class edu.stanford.smi.protegex.owl.ui.components.AddResourceAction
SYMMETRIC_PROPERTY - Static variable in interface edu.stanford.smi.protegex.owl.model.OWLNames.Cls
SymmetricPropertyMustHaveEqualRangeAndDomainTest - Class in edu.stanford.smi.protegex.owl.testing.sanity
SymmetricPropertyMustHaveEqualRangeAndDomainTest() - Constructor for class edu.stanford.smi.protegex.owl.testing.sanity.SymmetricPropertyMustHaveEqualRangeAndDomainTest
synchronizeRDFSDomainWithProtegeDomain(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.model.framestore.DomainUpdateFrameStore
synchronizeRDFSRangeWithProtegeAllowedValues(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.model.framestore.RangeUpdateFrameStore
synchronizeReasoner(ReasonerTaskListener) - Method in class edu.stanford.smi.protegex.owl.inference.dig.DefaultProtegeDIGReasoner
synchronizeReasoner(ReasonerTaskListener) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.DefaultProtegeOWLReasoner
synchronizeReasoner - Variable in class edu.stanford.smi.protegex.owl.inference.reasoner.AbstractProtegeReasoner
synchronizeReasoner(ReasonerTaskListener) - Method in class edu.stanford.smi.protegex.owl.inference.reasoner.AbstractProtegeReasoner
SynchronizeReasonerTask - Class in edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Aug 16, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
SynchronizeReasonerTask(ProtegeOWLReasoner) - Constructor for class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.SynchronizeReasonerTask
SynchronizeReasonerTask - Class in edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner
SynchronizeReasonerTask(ProtegeReasoner) - Constructor for class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.SynchronizeReasonerTask
synchronizeTripleStoreAfterOntologyRename(OWLModel, String, OWLOntology) - Static method in class edu.stanford.smi.protegex.owl.model.impl.OWLUtil
  Ensures that the triple store and the renamed ontology have the same name.
SYNONYMS - Static variable in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGVocabulary.Response
SyntaxConverter - Interface in edu.stanford.smi.protegex.owl.ui.code
  An interface for objects that can convert textual input such as "and" into other characters which are otherwise hard to enter.
SyntaxHelpAction - Class in edu.stanford.smi.protegex.owl.ui.menu
  This action is required for showing the Protege OWL restriction syntax within a JDialog.
SyntaxHelpAction() - Constructor for class edu.stanford.smi.protegex.owl.ui.menu.SyntaxHelpAction

## T

TAB_NAME - Static variable in class edu.stanford.smi.protegex.owl.ui.subsumption.ChangedClassesPanel
table - Variable in class edu.stanford.smi.protegex.owl.ui.components.triples.CreateValueAction
table - Variable in class edu.stanford.smi.protegex.owl.ui.conditions.AbstractConditionsWidget
TABLE_BACKGROUND - Static variable in class edu.stanford.smi.protegex.owl.ui.components.annotations.AnnotationsTableCellHolder
TABLE_FOREGROUND - Static variable in class edu.stanford.smi.protegex.owl.ui.components.annotations.AnnotationsTableCellHolder
TABLE_SELECTION_BACKGROUND - Static variable in class edu.stanford.smi.protegex.owl.ui.components.annotations.AnnotationsTableCellHolder
TABLE_SELECTION_FOREGROUND - Static variable in class edu.stanford.smi.protegex.owl.ui.components.annotations.AnnotationsTableCellHolder
tableModel - Variable in class edu.stanford.smi.protegex.owl.ui.conditions.AbstractConditionsWidget
TabNavigationHistorySelectable - Class in edu.stanford.smi.protegex.owl.ui.navigation
TabNavigationHistorySelectable(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.ui.navigation.TabNavigationHistorySelectable
tabSize - Variable in class edu.stanford.smi.protegex.owl.model.classparser.compact.JavaCharStream
tabSize - Variable in class edu.stanford.smi.protegex.owl.model.classparser.dl.JavaCharStream
tabSize - Variable in class edu.stanford.smi.protegex.owl.model.classparser.manchester.JavaCharStream
TAN - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLConstants.BuiltIns
  Deprecated.
TAN - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.CoreBuiltIns
Task - Interface in edu.stanford.smi.protegex.owl.model
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Sep 11, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm

  Represents a task that could potentially take a significant amount of time to complete and should therefore have some kind of progress display if this is the case.
taskCompleted(ReasonerTaskEvent) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.ClassifyTaxonomyTask
taskCompleted(ReasonerTaskEvent) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.ClassifyTaxonomyTask
taskCompleted(ReasonerTaskEvent) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.ReasonerTaskAdapter
taskCompleted(ReasonerTaskEvent) - Method in interface edu.stanford.smi.protegex.owl.inference.protegeowl.task.ReasonerTaskListener
taskFailed(ReasonerTaskEvent) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.ClassifyTaxonomyTask
taskFailed(ReasonerTaskEvent) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.ClassifyTaxonomyTask
taskFailed(ReasonerTaskEvent) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.ReasonerTaskAdapter
taskFailed(ReasonerTaskEvent) - Method in interface edu.stanford.smi.protegex.owl.inference.protegeowl.task.ReasonerTaskListener
TaskManager - Interface in edu.stanford.smi.protegex.owl.model
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Sep 11, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
TaskProgressDisplay - Interface in edu.stanford.smi.protegex.owl.model
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Sep 11, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
tellNamespaceChanged(String, String, String) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractNamespaceManager
tellPrefixChanged(String, String, String) - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractNamespaceManager
TELLS - Static variable in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGVocabulary
TEMPLATE_FILE_NAME - Static variable in class edu.stanford.smi.protegex.owl.jena.JenaOWLModel
templateFacetAdded(ClsEvent) - Method in class edu.stanford.smi.protegex.owl.model.event.ClassAdapter
  Deprecated.
templateFacetAdded(ClsEvent) - Method in interface edu.stanford.smi.protegex.owl.model.event.ProtegeClsListener
  Deprecated. no OWL equivalent
templateFacetRemoved(ClsEvent) - Method in class edu.stanford.smi.protegex.owl.model.event.ClassAdapter
  Deprecated.
templateFacetRemoved(ClsEvent) - Method in interface edu.stanford.smi.protegex.owl.model.event.ProtegeClsListener
  Deprecated. no OWL equivalent
templateFacetValueChanged(ClsEvent) - Method in class edu.stanford.smi.protegex.owl.model.event.ClassAdapter
  Deprecated.
templateFacetValueChanged(ClsEvent) - Method in interface edu.stanford.smi.protegex.owl.model.event.ProtegeClsListener
  Deprecated. no OWL equivalent
templateSlotAdded(ClsEvent) - Method in class edu.stanford.smi.protegex.owl.model.event.ClassAdapter
  Deprecated.
templateSlotAdded(ClsEvent) - Method in interface edu.stanford.smi.protegex.owl.model.event.ProtegeClsListener
  Deprecated.
templateSlotClsAdded(SlotEvent) - Method in class edu.stanford.smi.protegex.owl.model.event.PropertyAdapter
  Deprecated.
templateSlotClsAdded(SlotEvent) - Method in interface edu.stanford.smi.protegex.owl.model.event.ProtegeSlotListener
  Deprecated.
templateSlotClsRemoved(SlotEvent) - Method in class edu.stanford.smi.protegex.owl.model.event.PropertyAdapter
  Deprecated.
templateSlotClsRemoved(SlotEvent) - Method in interface edu.stanford.smi.protegex.owl.model.event.ProtegeSlotListener
  Deprecated.
templateSlotRemoved(ClsEvent) - Method in class edu.stanford.smi.protegex.owl.model.event.ClassAdapter
  Deprecated.
templateSlotRemoved(ClsEvent) - Method in interface edu.stanford.smi.protegex.owl.model.event.ProtegeClsListener
  Deprecated.
templateSlotValueChanged(ClsEvent) - Method in class edu.stanford.smi.protegex.owl.model.event.ClassAdapter
  Deprecated.
templateSlotValueChanged(ClsEvent) - Method in interface edu.stanford.smi.protegex.owl.model.event.ProtegeClsListener
  Deprecated. no OWL equivalent
test(RDFResource) - Method in class edu.stanford.smi.protegex.owl.testing.constraints.FindSPARQLAssertsTest
test(RDFSClass) - Method in class edu.stanford.smi.protegex.owl.testing.constraints.SPARQLAssertTest
test(RDFSClass) - Method in class edu.stanford.smi.protegex.owl.testing.owldl.NoCardiRestrictionOnTransitivePropertiesOWLDLTest
test(RDFSClass) - Method in class edu.stanford.smi.protegex.owl.testing.owldl.NoClassesOrPropertiesInEnumerationsOWLDLTest
test(OWLModel) - Method in class edu.stanford.smi.protegex.owl.testing.owldl.NoImportOfSystemOntologiesOWLDLTest
test(RDFSClass) - Method in class edu.stanford.smi.protegex.owl.testing.owldl.NoMetaclassOWLDLTest
test(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.testing.owldl.NoPropertiesWithClassAsRangeOWLDLTest
test(RDFSClass) - Method in class edu.stanford.smi.protegex.owl.testing.owldl.NoSubclassesOfRDFClassesOWLDLTest
test(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.testing.owldl.NoSuperOrSubPropertiesOfAnnotationPropertiesTest
test(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.testing.owldl.TransitivePropertiesCannotBeFunctionalOWLDLTest
test(OWLModel) - Method in interface edu.stanford.smi.protegex.owl.testing.OWLModelTest
test(RDFProperty) - Method in interface edu.stanford.smi.protegex.owl.testing.RDFPropertyTest
  Performs a check of a given property.
test(RDFResource) - Method in interface edu.stanford.smi.protegex.owl.testing.RDFResourceTest
  Performs a check of a given RDFResource.
test(RDFSClass) - Method in interface edu.stanford.smi.protegex.owl.testing.RDFSClassTest
  Performs a check of a given RDFSClass.
test(RDFResource) - Method in class edu.stanford.smi.protegex.owl.testing.sanity.FacetConstraintsTest
test(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.testing.sanity.InverseOfFunctionalMustBeInverseFunctionalTest
test(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.testing.sanity.InverseOfInverseFunctionalMustBeFunctionalTest
test(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.testing.sanity.InverseOfSubpropertyMustBeSubpropertyOfInverseOfSuperpropertyTest
test(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.testing.sanity.InverseOfSymmetricPropertyMustBeSymmetricPropertyTest
test(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.testing.sanity.InverseOfTopLevelPropertyMustBeTopLevelPropertyTest
test(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.testing.sanity.InverseOfTransitivePropertyMustBeTransitivePropertyTest
test(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.testing.sanity.InversePropertyMustHaveMatchingRangeAndDomainTest
test(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.testing.sanity.PropertyDomainEmptyTest
test(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.testing.sanity.PropertyDomainRedundancyTest
test(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.testing.sanity.PropertyRangeRedundancyTest
test(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.testing.sanity.SubpropertyDomainMustNarrowTest
test(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.testing.sanity.SubpropertyRangeMustNarrowTest
test(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.testing.sanity.SymmetricPropertyMustHaveEqualRangeAndDomainTest
test(RDFSClass) - Method in class edu.stanford.smi.protegex.owl.testing.style.MinCardiZeroTest
test(RDFSClass) - Method in class edu.stanford.smi.protegex.owl.testing.style.PrimitiveSubclassesDisjointTest
test(RDFSClass) - Method in class edu.stanford.smi.protegex.owl.testing.style.SingleAssertedSuperclassTest
test(RDFSClass) - Method in class edu.stanford.smi.protegex.owl.testing.style.SubclassesRestrictionDuplicatesThatOfSuperTest
test(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.testing.todo.DeprecationOWLTest
test(RDFSClass) - Method in class edu.stanford.smi.protegex.owl.testing.todo.DeprecationOWLTest
test(RDFResource) - Method in class edu.stanford.smi.protegex.owl.testing.todo.TodoAnnotationOWLTest
TEST - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
TEST_SETTINGS - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
testMain() - Method in class edu.stanford.smi.protegex.owlx.examples.javaDemo.JavaDemoApplicationTest
testManager - Variable in class edu.stanford.smi.protegex.owl.ui.testing.AbstractOWLTestAction
TestPerson - Interface in edu.stanford.smi.protegex.owl.model.factory.tests
  A test interface only.
TEXT - Static variable in class edu.stanford.smi.protegex.owl.ui.cls.CreateSiblingClassAction
TEXT - Static variable in class edu.stanford.smi.protegex.owl.ui.cls.CreateSubclassAction
TEXT - Static variable in class edu.stanford.smi.protegex.owl.ui.cls.DeleteClassAction
textCompFocusListener - Variable in class edu.stanford.smi.protegex.owl.ui.components.singleliteral.AbstractSingleLiteralComponent
textCompKeyListener - Variable in class edu.stanford.smi.protegex.owl.ui.components.singleliteral.AbstractSingleLiteralComponent
THING - Static variable in interface edu.stanford.smi.protegex.owl.model.OWLNames.Cls
THING - Static variable in interface edu.stanford.smi.protegex.owl.model.OWLNames.ClsID
ThreadedFind - Class in edu.stanford.smi.protegex.owl.ui.search.finder
ThreadedFind(OWLModel, int) - Constructor for class edu.stanford.smi.protegex.owl.ui.search.finder.ThreadedFind
TIME - Static variable in interface edu.stanford.smi.protegex.owl.model.XSDNames
TIME - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLConstants.BuiltIns
  Deprecated.
TIME - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.CoreBuiltIns
TimeAnnotationsWidgetPlugin - Class in edu.stanford.smi.protegex.owl.ui.metadata
TimeAnnotationsWidgetPlugin() - Constructor for class edu.stanford.smi.protegex.owl.ui.metadata.TimeAnnotationsWidgetPlugin
timeChanged(TimePanel) - Method in class edu.stanford.smi.protegex.owl.ui.widget.OWLDateTimeWidget
timeChanged(TimePanel) - Method in class edu.stanford.smi.protegex.owl.ui.widget.OWLTimeWidget
timeChanged(TimePanel) - Method in interface edu.stanford.smi.protegex.owl.ui.widget.TimePanel.Listener
TimeDifference - Class in edu.stanford.smi.protegex.owl.inference.util
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Jul 21, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
TimeDifference() - Constructor for class edu.stanford.smi.protegex.owl.inference.util.TimeDifference
TimePanel - Class in edu.stanford.smi.protegex.owl.ui.widget
TimePanel(TimePanel.Listener) - Constructor for class edu.stanford.smi.protegex.owl.ui.widget.TimePanel
TimePanel.Listener - Interface in edu.stanford.smi.protegex.owl.ui.widget
TimeValueEditor - Class in edu.stanford.smi.protegex.owl.ui.editors
TimeValueEditor() - Constructor for class edu.stanford.smi.protegex.owl.ui.editors.TimeValueEditor
TITLE - Static variable in class edu.stanford.smi.protegex.owl.ui.metadatatab.imports.CreateImportedTripleStorePanel
TITLE - Static variable in class edu.stanford.smi.protegex.owl.ui.subsumption.AssertedSubsumptionTreePanel
TO - Static variable in interface edu.stanford.smi.protegex.owl.model.ProtegeNames.Slot
TODO - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
TODO_PREFIX - Static variable in class edu.stanford.smi.protegex.owl.model.ProtegeNames
TODO_PROPERTY - Static variable in class edu.stanford.smi.protegex.owl.model.ProtegeNames
TodoAnnotationOWLTest - Class in edu.stanford.smi.protegex.owl.testing.todo
TodoAnnotationOWLTest() - Constructor for class edu.stanford.smi.protegex.owl.testing.todo.TodoAnnotationOWLTest
ToggleSuperclassExplorerAction - Class in edu.stanford.smi.protegex.owl.ui.cls
ToggleSuperclassExplorerAction(Selectable, boolean) - Constructor for class edu.stanford.smi.protegex.owl.ui.cls.ToggleSuperclassExplorerAction
Token - Class in edu.stanford.smi.protegex.owl.model.classparser.compact
  Describes the input token stream.
Token() - Constructor for class edu.stanford.smi.protegex.owl.model.classparser.compact.Token
token - Variable in class edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxParser
Token - Class in edu.stanford.smi.protegex.owl.model.classparser.dl
  Describes the input token stream.
Token() - Constructor for class edu.stanford.smi.protegex.owl.model.classparser.dl.Token
token - Variable in class edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParser
Token - Class in edu.stanford.smi.protegex.owl.model.classparser.manchester
  Describes the input token stream.
Token() - Constructor for class edu.stanford.smi.protegex.owl.model.classparser.manchester.Token
token_source - Variable in class edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxParser
token_source - Variable in class edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParser
tokenImage - Static variable in interface edu.stanford.smi.protegex.owl.model.classparser.compact.CompactParserConstants
tokenImage - Variable in exception edu.stanford.smi.protegex.owl.model.classparser.compact.ParseException
  This is a reference to the "tokenImage" array of the generated parser within which the parse error occurred.
tokenImage - Static variable in interface edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxParserConstants
tokenImage - Variable in exception edu.stanford.smi.protegex.owl.model.classparser.dl.ParseException
  This is a reference to the "tokenImage" array of the generated parser within which the parse error occurred.
tokenImage - Static variable in interface edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParserConstants
tokenImage - Variable in exception edu.stanford.smi.protegex.owl.model.classparser.manchester.ParseException
  This is a reference to the "tokenImage" array of the generated parser within which the parse error occurred.
TOKENIZE - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLConstants.BuiltIns
  Deprecated.
TOKENIZE - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.CoreBuiltIns
TokenMgrError - Error in edu.stanford.smi.protegex.owl.model.classparser.compact
TokenMgrError() - Constructor for error edu.stanford.smi.protegex.owl.model.classparser.compact.TokenMgrError
TokenMgrError(String, int) - Constructor for error edu.stanford.smi.protegex.owl.model.classparser.compact.TokenMgrError
TokenMgrError(boolean, int, int, int, String, char, int) - Constructor for error edu.stanford.smi.protegex.owl.model.classparser.compact.TokenMgrError
TokenMgrError - Error in edu.stanford.smi.protegex.owl.model.classparser.dl
TokenMgrError() - Constructor for error edu.stanford.smi.protegex.owl.model.classparser.dl.TokenMgrError
TokenMgrError(String, int) - Constructor for error edu.stanford.smi.protegex.owl.model.classparser.dl.TokenMgrError
TokenMgrError(boolean, int, int, int, String, char, int) - Constructor for error edu.stanford.smi.protegex.owl.model.classparser.dl.TokenMgrError
TokenMgrError - Error in edu.stanford.smi.protegex.owl.model.classparser.manchester
TokenMgrError() - Constructor for error edu.stanford.smi.protegex.owl.model.classparser.manchester.TokenMgrError
TokenMgrError(String, int) - Constructor for error edu.stanford.smi.protegex.owl.model.classparser.manchester.TokenMgrError
TokenMgrError(boolean, int, int, int, String, char, int) - Constructor for error edu.stanford.smi.protegex.owl.model.classparser.manchester.TokenMgrError
TOLD_VALUES - Static variable in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGVocabulary.Ask
toolBar - Variable in class edu.stanford.smi.protegex.owl.ui.cls.HierarchyPanel
toolBar - Variable in class edu.stanford.smi.protegex.owl.ui.results.ResultsPanel
TOOLS_MENU - Static variable in class edu.stanford.smi.protegex.owl.ui.actions.AbstractOWLModelAction
TOOLS_MENU - Static variable in class edu.stanford.smi.protegex.owl.ui.widget.OWLUI
  Deprecated. use constant from AbstractOWLModelAction
TooltippedSelectableList - Class in edu.stanford.smi.protegex.owl.ui.components
TooltippedSelectableList() - Constructor for class edu.stanford.smi.protegex.owl.ui.components.TooltippedSelectableList
TooltippedSelectableTree - Class in edu.stanford.smi.protegex.owl.ui.subsumption
TooltippedSelectableTree(Action, LazyTreeRoot) - Constructor for class edu.stanford.smi.protegex.owl.ui.subsumption.TooltippedSelectableTree
TOP - Static variable in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGVocabulary.Language
TOP - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
toString() - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.log.DefaultConceptConsistencyLogRecord
toString() - Method in class edu.stanford.smi.protegex.owl.inference.util.TimeDifference
toString() - Method in class edu.stanford.smi.protegex.owl.jena.parser.UndefTriple
toString() - Method in class edu.stanford.smi.protegex.owl.model.classparser.compact.Token
  Returns the image.
toString() - Method in class edu.stanford.smi.protegex.owl.model.classparser.dl.Token
  Returns the image.
toString() - Method in class edu.stanford.smi.protegex.owl.model.classparser.manchester.Token
  Returns the image.
toString() - Method in class edu.stanford.smi.protegex.owl.model.impl.AbstractRDFSClass
toString() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultOWLOntology
toString() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFIndividual
toString() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
toString() - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFSLiteral
toString() - Method in class edu.stanford.smi.protegex.owl.model.triplestore.impl.DefaultTriple
toString() - Method in class edu.stanford.smi.protegex.owl.model.triplestore.impl.DefaultTuple
toString() - Method in class edu.stanford.smi.protegex.owl.model.triplestore.impl.TripleStoreImpl
toString() - Method in class edu.stanford.smi.protegex.owl.model.triplestore.impl.TripleStoreModelImpl
toString() - Method in class edu.stanford.smi.protegex.owl.model.util.DLExpressivityChecker
toString() - Method in class edu.stanford.smi.protegex.owl.testing.DefaultOWLTestResult
toString() - Method in class edu.stanford.smi.protegex.owl.ui.cls.ClassTreeNode
toString() - Method in class edu.stanford.smi.protegex.owl.ui.cls.OWLSubclassPane
toString() - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTableItem
toString() - Method in class edu.stanford.smi.protegex.owl.ui.existential.ExistentialTreeNode
toString() - Method in class edu.stanford.smi.protegex.owl.ui.existential.ExistentialTreePanel
toString(boolean) - Method in class edu.stanford.smi.protegex.owl.ui.explorer.ExplorerTreeNode
toString() - Method in class edu.stanford.smi.protegex.owl.ui.explorer.ExplorerTreePanel
toString(boolean) - Method in class edu.stanford.smi.protegex.owl.ui.explorer.OWLLogicalClassTreeNode
toString(boolean) - Method in class edu.stanford.smi.protegex.owl.ui.explorer.OWLQuantifierRestrictionTreeNode
toString() - Method in class edu.stanford.smi.protegex.owl.ui.metrics.MetricObject
toString() - Method in class edu.stanford.smi.protegex.owl.ui.search.finder.FindResult
toString() - Method in class edu.stanford.smi.protegex.owl.ui.subsumption.SubsumptionTreeFinder
toString() - Method in class edu.stanford.smi.protegex.owl.ui.subsumption.SubsumptionTreeNode
toString() - Method in class edu.stanford.smi.protegex.owl.ui.subsumption.SubsumptionTreePanel
toString() - Method in class edu.stanford.smi.protegex.owl.util.OWLBrowserSlotPattern
TOTAL_DIGITS - Static variable in class edu.stanford.smi.protegex.owl.model.XSPNames
  Deprecated. use the helper method `XSPNames.get(int resourceID)`
TRAN_ROLES - Static variable in class edu.stanford.smi.protegex.owl.model.util.DLExpressivityChecker
TRANSITIVE - Static variable in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGVocabulary.Tell
TRANSITIVE_PROPERTY - Static variable in interface edu.stanford.smi.protegex.owl.model.OWLNames.Cls
TransitiveProperties_that_are_FunctionalProperties - Static variable in class edu.stanford.smi.protegex.owl.ui.profiles.OWLProfiles
TransitiveProperties_that_are_InverseFunctionalProperties - Static variable in class edu.stanford.smi.protegex.owl.ui.profiles.OWLProfiles
TransitivePropertiesCannotBeFunctionalOWLDLTest - Class in edu.stanford.smi.protegex.owl.testing.owldl
TransitivePropertiesCannotBeFunctionalOWLDLTest() - Constructor for class edu.stanford.smi.protegex.owl.testing.owldl.TransitivePropertiesCannotBeFunctionalOWLDLTest
TRANSLATE - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLConstants.BuiltIns
  Deprecated.
TRANSLATE - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.CoreBuiltIns
translateToDIG(OWLModel, Document, Node) - Method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DefaultDIGTranslator
translateToDIG(RDFResource, Document, Node) - Method in class edu.stanford.smi.protegex.owl.inference.dig.translator.DefaultDIGTranslator
  Translates an element of an OWLModel to DIG
translateToDIG(OWLModel, Document, Node) - Method in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGTranslator
  Translates an OWLModel to DIG
translateToDIG(RDFResource, Document, Node) - Method in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGTranslator
  Translates an element of an OWLModel to DIG
transmitSelection() - Method in class edu.stanford.smi.protegex.owl.ui.cls.OWLClassesTab
transmitSelection(Collection) - Method in class edu.stanford.smi.protegex.owl.ui.individuals.OWLIndividualsTab
transmitSelection() - Method in class edu.stanford.smi.protegex.owl.ui.individuals.OWLIndividualsTab
transmitToReasoner(ReasonerLogRecord) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.SynchronizeReasonerTask
transmitToReasoner(ReasonerLogRecord) - Method in class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.SynchronizeReasonerTask
TreePanel - Interface in edu.stanford.smi.protegex.owl.ui.actions
  An interface for containers of a JTree.
Triple - Interface in edu.stanford.smi.protegex.owl.model.triplestore
  A triple in an OWLModel or RDF graph.
TRIPLE - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
TripleAction - Interface in edu.stanford.smi.protegex.owl.ui.actions.triple
  An object representing an "action" that can be performed on a given Triple.
TripleActionManager - Class in edu.stanford.smi.protegex.owl.ui.actions.triple
  A singleton managing the available TripleActions.
TripleActionManager() - Constructor for class edu.stanford.smi.protegex.owl.ui.actions.triple.TripleActionManager
TripleActionManager.Adder - Interface in edu.stanford.smi.protegex.owl.ui.actions.triple
TripleActionSwingAction - Class in edu.stanford.smi.protegex.owl.ui.actions.triple
  A Swing Action that wraps a (generic) TripleAction.
TripleActionSwingAction(TripleAction, Triple) - Constructor for class edu.stanford.smi.protegex.owl.ui.actions.triple.TripleActionSwingAction
TripleDescriptor - Interface in edu.stanford.smi.protegex.owl.model.triplestore
  A common base interface for Triple and TriplePath, for methods that take either as argument.
TripleDisplay - Interface in edu.stanford.smi.protegex.owl.ui.results
  An interface for tabs that can display triples.
TripleDisplayUtil - Class in edu.stanford.smi.protegex.owl.ui.results
TripleDisplayUtil() - Constructor for class edu.stanford.smi.protegex.owl.ui.results.TripleDisplayUtil
TriplePath - Class in edu.stanford.smi.protegex.owl.model.triplestore
  A chain of Triples, so that the object of one Triple is the subject of the next.
TriplePath(Iterator) - Constructor for class edu.stanford.smi.protegex.owl.model.triplestore.TriplePath
TriplePath(Collection) - Constructor for class edu.stanford.smi.protegex.owl.model.triplestore.TriplePath
TriplePostProcessorLogFormatter - Class in edu.stanford.smi.protegex.owl.jena.parser
TriplePostProcessorLogFormatter() - Constructor for class edu.stanford.smi.protegex.owl.jena.parser.TriplePostProcessorLogFormatter
TripleProcessor - Class in edu.stanford.smi.protegex.owl.jena.parser
TripleProcessor(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.jena.parser.TripleProcessor
TRIPLES - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
TriplesComponent - Class in edu.stanford.smi.protegex.owl.ui.components.triples
  A PropertyWidget to edit the values of annotation properties.
TriplesComponent(RDFProperty) - Constructor for class edu.stanford.smi.protegex.owl.ui.components.triples.TriplesComponent
TriplesComponent(RDFProperty, boolean) - Constructor for class edu.stanford.smi.protegex.owl.ui.components.triples.TriplesComponent
TriplesComponent(RDFProperty, String, Icon) - Constructor for class edu.stanford.smi.protegex.owl.ui.components.triples.TriplesComponent
TriplesComponent(RDFProperty, String, Icon, boolean) - Constructor for class edu.stanford.smi.protegex.owl.ui.components.triples.TriplesComponent
TripleSelectable - Interface in edu.stanford.smi.protegex.owl.ui
  A common interface for user interface components that can select triples from an ontology.
TriplesTable - Class in edu.stanford.smi.protegex.owl.ui.components.triples
  A JTable optimized for displaying a TriplesTableModel.
TriplesTable(Project, TriplesTableModel, String) - Constructor for class edu.stanford.smi.protegex.owl.ui.components.triples.TriplesTable
TriplesTableModel - Class in edu.stanford.smi.protegex.owl.ui.components.triples
  A TableModel to display property values for a given subject.
TriplesTableModel() - Constructor for class edu.stanford.smi.protegex.owl.ui.components.triples.TriplesTableModel
TriplesTableModel(RDFResource) - Constructor for class edu.stanford.smi.protegex.owl.ui.components.triples.TriplesTableModel
TripleStore - Interface in edu.stanford.smi.protegex.owl.model.triplestore
  An interface for low-level access to the single triples in an OWLModel.
TripleStoreFilterTripleWriter - Class in edu.stanford.smi.protegex.owl.model.triplestore
  A DelegatingTripleWriter that only writes those triples that are also in a given TripleStore.
TripleStoreFilterTripleWriter(TripleWriter, TripleStore) - Constructor for class edu.stanford.smi.protegex.owl.model.triplestore.TripleStoreFilterTripleWriter
TripleStoreImpl - Class in edu.stanford.smi.protegex.owl.model.triplestore.impl
  A TripleStore that acts as a view on an existing NarrowFrameStore.
TripleStoreImpl(OWLModel, NarrowFrameStore, TripleStoreModel) - Constructor for class edu.stanford.smi.protegex.owl.model.triplestore.impl.TripleStoreImpl
TripleStoreImpl(OWLModel, NarrowFrameStore, TripleStoreModel, NamespaceManager, String) - Constructor for class edu.stanford.smi.protegex.owl.model.triplestore.impl.TripleStoreImpl
tripleStoreModel - Variable in class edu.stanford.smi.protegex.owl.model.triplestore.impl.TripleStoreImpl
TripleStoreModel - Interface in edu.stanford.smi.protegex.owl.model.triplestore
  The TripleStoreModel is an access layer on top of the normal OWLModel.
TripleStoreModelImpl - Class in edu.stanford.smi.protegex.owl.model.triplestore.impl
TripleStoreModelImpl(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.model.triplestore.impl.TripleStoreModelImpl
TripleStoreSelectionAction - Class in edu.stanford.smi.protegex.owl.ui.triplestore
TripleStoreSelectionAction(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.ui.triplestore.TripleStoreSelectionAction
TripleStoreSelectionPanel - Class in edu.stanford.smi.protegex.owl.ui.triplestore
  A JPanel that can be used to switch the active TripleStore in an OWLModel.
TripleStoreSelectionPanel(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.ui.triplestore.TripleStoreSelectionPanel
TripleStoreUtil - Class in edu.stanford.smi.protegex.owl.model.triplestore
TripleStoreUtil() - Constructor for class edu.stanford.smi.protegex.owl.model.triplestore.TripleStoreUtil
TriplesViewResourceDisplayPlugin - Class in edu.stanford.smi.protegex.owl.ui.resourcedisplay
TriplesViewResourceDisplayPlugin() - Constructor for class edu.stanford.smi.protegex.owl.ui.resourcedisplay.TriplesViewResourceDisplayPlugin
TripleWriter - Interface in edu.stanford.smi.protegex.owl.model.triplestore
  An interface for objects that can write Triples into a file or other stream.
TripleWriterUtil - Class in edu.stanford.smi.protegex.owl.model.triplestore
TripleWriterUtil() - Constructor for class edu.stanford.smi.protegex.owl.model.triplestore.TripleWriterUtil
TRUE - Static variable in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGVocabulary.Response
Tuple - Interface in edu.stanford.smi.protegex.owl.model.triplestore
  A subject/predicate pair.
TutorialTabWidget - Class in edu.stanford.smi.protegex.owlx.examples
  A simple demo tab widget that shows how to write custom extensions to Protege-OWL.
TutorialTabWidget() - Constructor for class edu.stanford.smi.protegex.owlx.examples.TutorialTabWidget
TYPE - Static variable in interface edu.stanford.smi.protegex.owl.model.RDFNames.Slot
type - Variable in class edu.stanford.smi.protegex.owl.ui.search.FindUsageTableItem
TYPE - Static variable in class edu.stanford.smi.protegex.owl.ui.subsumption.SubsumptionTreePanel
TYPE_DEFINITION_BASE - Static variable in interface edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTableConstants
TYPE_ERROR - Static variable in interface edu.stanford.smi.protegex.owl.testing.OWLTestResult
TYPE_INHERITED - Static variable in interface edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTableConstants
TYPE_OWL_FULL - Static variable in interface edu.stanford.smi.protegex.owl.testing.OWLTestResult
TYPE_SUPERCLASS - Static variable in interface edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTableConstants
TYPE_WARNING - Static variable in interface edu.stanford.smi.protegex.owl.testing.OWLTestResult
typeAdded(RDFResource, RDFSClass, FrameEvent) - Method in class edu.stanford.smi.protegex.owl.model.event.ResourceAdapter
typeAdded(RDFResource, RDFSClass) - Method in class edu.stanford.smi.protegex.owl.model.event.ResourceAdapter
typeAdded(RDFResource, RDFSClass) - Method in interface edu.stanford.smi.protegex.owl.model.event.ResourceListener
  Called when a resource has been assigned a new rdf:type.
typeRemoved(RDFResource, RDFSClass, FrameEvent) - Method in class edu.stanford.smi.protegex.owl.model.event.ResourceAdapter
typeRemoved(RDFResource, RDFSClass) - Method in class edu.stanford.smi.protegex.owl.model.event.ResourceAdapter
typeRemoved(RDFResource, RDFSClass) - Method in interface edu.stanford.smi.protegex.owl.model.event.ResourceListener
  Called when an rdf:type has been removed from a resource.
TYPES - Static variable in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGVocabulary.Ask
TypeUpdateFrameStore - Class in edu.stanford.smi.protegex.owl.model.framestore
TypeUpdateFrameStore(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.model.framestore.TypeUpdateFrameStore

## U

U - Static variable in class edu.stanford.smi.protegex.owl.model.util.DLExpressivityChecker
UISettingsPanel - Class in edu.stanford.smi.protegex.owl.ui.menu.preferences
  A JComponent that allows to specify user interface settings.
UISettingsPanel(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.ui.menu.preferences.UISettingsPanel
UNARY_MINUS - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLConstants.BuiltIns
  Deprecated.
UNARY_MINUS - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.CoreBuiltIns
UNARY_PLUS - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLConstants.BuiltIns
  Deprecated.
UNARY_PLUS - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.CoreBuiltIns
UNBOUNDEDVAL - Static variable in interface edu.stanford.smi.protegex.owl.model.classparser.compact.CompactParserConstants
UNBOUNDEDVAL - Static variable in interface edu.stanford.smi.protegex.owl.model.classparser.dl.DLSyntaxParserConstants
UNBOUNDEDVAL - Static variable in interface edu.stanford.smi.protegex.owl.model.classparser.manchester.ManchesterOWLParserConstants
uncaughtException(Thread, Throwable) - Method in class edu.stanford.smi.protegex.owl.inference.util.DefaultUncaughtExceptionHandler
UndefTriple - Class in edu.stanford.smi.protegex.owl.jena.parser
UndefTriple(AResource, AResource, AResource, TripleStore) - Constructor for class edu.stanford.smi.protegex.owl.jena.parser.UndefTriple
UndefTriple(AResource, AResource, ALiteral, TripleStore) - Constructor for class edu.stanford.smi.protegex.owl.jena.parser.UndefTriple
UnhideClassAction - Class in edu.stanford.smi.protegex.owl.ui.cls
  A ResourceAction to set the selected class to visible.
UnhideClassAction() - Constructor for class edu.stanford.smi.protegex.owl.ui.cls.UnhideClassAction
unifyNamespace(OntModel, String, String) - Static method in class edu.stanford.smi.protegex.owl.jena.JenaNormalizer
Union - Static variable in class edu.stanford.smi.protegex.owl.swrl.model.SQWRLNames
UNION_CLASS - Static variable in interface edu.stanford.smi.protegex.owl.model.OWLNames.Cls
Union_Classes - Static variable in class edu.stanford.smi.protegex.owl.ui.profiles.OWLProfiles
UNION_OF - Static variable in interface edu.stanford.smi.protegex.owl.model.OWLNames.Slot
unionDomainClassAdded(RDFProperty, RDFSClass, SlotEvent) - Method in class edu.stanford.smi.protegex.owl.model.event.PropertyAdapter
unionDomainClassAdded(RDFProperty, RDFSClass) - Method in class edu.stanford.smi.protegex.owl.model.event.PropertyAdapter
unionDomainClassAdded(RDFProperty, RDFSClass) - Method in interface edu.stanford.smi.protegex.owl.model.event.PropertyListener
  Called after a class has been added to the union domain of a property.
unionDomainClassRemoved(RDFProperty, RDFSClass, SlotEvent) - Method in class edu.stanford.smi.protegex.owl.model.event.PropertyAdapter
unionDomainClassRemoved(RDFProperty, RDFSClass) - Method in class edu.stanford.smi.protegex.owl.model.event.PropertyAdapter
unionDomainClassRemoved(RDFProperty, RDFSClass) - Method in interface edu.stanford.smi.protegex.owl.model.event.PropertyListener
  Called after a class has been removed from the union domain of a property.
UnionRangeClassesComponent - Class in edu.stanford.smi.protegex.owl.ui.properties.range
  A component that can be used to edit arbitrary class expressions as rdfs:range values.
UnionRangeClassesComponent(OWLModel, PropertyWidget) - Constructor for class edu.stanford.smi.protegex.owl.ui.properties.range.UnionRangeClassesComponent
UNIQUE_NAME_ASSUMPTION - Static variable in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGVocabulary.Ask
UNIQUE_SESSION_ID - Static variable in class edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel
UnmodifiableNamespaceManager - Class in edu.stanford.smi.protegex.owl.model.impl
UnmodifiableNamespaceManager(NamespaceManager) - Constructor for class edu.stanford.smi.protegex.owl.model.impl.UnmodifiableNamespaceManager
unregister(ProjectView) - Static method in class edu.stanford.smi.protegex.owl.ui.ProtegeUI
unregisterPlugin(String) - Static method in class edu.stanford.smi.protegex.owl.swrl.P3SWRLTabPluginManager
UnresolvedImportHandler - Interface in edu.stanford.smi.protegex.owl.jena.parser
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Sep 21, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
UnresolvedImportUIHandler - Class in edu.stanford.smi.protegex.owl.ui.repository
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Sep 26, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
UnresolvedImportUIHandler() - Constructor for class edu.stanford.smi.protegex.owl.ui.repository.UnresolvedImportUIHandler
UntypedResourcesExample - Class in edu.stanford.smi.protegex.owlx.examples
UntypedResourcesExample() - Constructor for class edu.stanford.smi.protegex.owlx.examples.UntypedResourcesExample
update(RDFSDatatype) - Method in class edu.stanford.smi.protegex.owl.ui.properties.range.FacetsPanel
update(RDFSDatatype) - Method in class edu.stanford.smi.protegex.owl.ui.properties.range.NumericFacetsPanel
update(RDFSDatatype) - Method in class edu.stanford.smi.protegex.owl.ui.properties.range.StringFacetsPanel
updateActions() - Method in class edu.stanford.smi.protegex.owl.ui.components.annotations.AnnotationsComponent
updateActions() - Method in class edu.stanford.smi.protegex.owl.ui.components.triples.AbstractTriplesComponent
updateActions() - Method in class edu.stanford.smi.protegex.owl.ui.components.triples.TriplesComponent
updateActions() - Method in class edu.stanford.smi.protegex.owl.ui.existential.ExistentialTreePanel
updateActions() - Method in class edu.stanford.smi.protegex.owl.ui.explorer.ExplorerTreePanel
updateActions() - Method in class edu.stanford.smi.protegex.owl.ui.subsumption.InferredSubsumptionTreePanel
updateActions() - Method in class edu.stanford.smi.protegex.owl.ui.subsumption.SubsumptionTreePanel
updateAddButton() - Method in class edu.stanford.smi.protegex.owl.ui.individuals.AssertedTypesListPanel
updateAllRestrictions(Cls, RDFProperty) - Method in class edu.stanford.smi.protegex.owl.model.framestore.updater.AllValuesFromRestrictionUpdater
updateBorder(Collection) - Method in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsWidget
updateBorder(Collection) - Method in class edu.stanford.smi.protegex.owl.ui.widget.AbstractPropertyValuesWidget
updateBorder(Collection) - Method in class edu.stanford.smi.protegex.owl.ui.widget.AbstractPropertyWidget
updateComponents() - Method in class edu.stanford.smi.protegex.owl.ui.widget.OWLDateTimeWidget
updateComponents() - Method in class edu.stanford.smi.protegex.owl.ui.widget.OWLDateWidget
updateCurrentEditorPane() - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.manchester.SuggestionPopup
updateDeleteActionState() - Method in class edu.stanford.smi.protegex.owl.ui.cls.AssertedClassesPanel
updateDisplay(OWLClassDisplay) - Static method in class edu.stanford.smi.protegex.owl.ui.code.OWLTextFormatter
updateEditableResourceState() - Method in class edu.stanford.smi.protegex.owl.model.triplestore.impl.TripleStoreModelImpl
updateEditableResourceState() - Method in interface edu.stanford.smi.protegex.owl.model.triplestore.TripleStoreModel
  Changes the `isIncluded()` value of all resources to reflect the currently active TripleStore.
updateEditableResourceState() - Method in class edu.stanford.smi.protegex.owl.server.triplestore.ClientTripleStoreModel
UpdateEquivalentClassesTask - Class in edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Jul 23, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
UpdateEquivalentClassesTask(ProtegeOWLReasoner) - Constructor for class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.UpdateEquivalentClassesTask
UpdateEquivalentClassesTask - Class in edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Jul 23, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
UpdateEquivalentClassesTask(ProtegeReasoner) - Constructor for class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.UpdateEquivalentClassesTask
updateErrorDisplay() - Method in class edu.stanford.smi.protegex.owl.ui.code.SymbolTextArea
updateFacetValues(OWLModel) - Method in class edu.stanford.smi.protegex.owl.model.framestore.TypeUpdateFrameStore
  Used by the parser to write the facet values in the underlying frames model, so that frames API calls return the correct values.
updateFrameInclusion(MergingNarrowFrameStore, Slot) - Static method in class edu.stanford.smi.protegex.owl.model.triplestore.TripleStoreUtil
  Updates the "isIncluded()" flag for all Frames, so that only those Frames that have their :NAME in the active FrameStore are not included.
updateGUI(SWRLImp) - Method in class edu.stanford.smi.protegex.owl.swrl.ui.widget.SWRLRuleSlotWidget
UpdateInconsistentClassesTask - Class in edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Jul 23, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
UpdateInconsistentClassesTask(ProtegeOWLReasoner) - Constructor for class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.UpdateInconsistentClassesTask
UpdateInconsistentClassesTask - Class in edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner
UpdateInconsistentClassesTask(ProtegeReasoner) - Constructor for class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.UpdateInconsistentClassesTask
UpdateInferredHierarchyTask - Class in edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Jul 22, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
UpdateInferredHierarchyTask(ProtegeOWLReasoner) - Constructor for class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.UpdateInferredHierarchyTask
UpdateInferredHierarchyTask - Class in edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Jul 22, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
UpdateInferredHierarchyTask(ProtegeReasoner) - Constructor for class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.UpdateInferredHierarchyTask
updateInferredModeOfWidgets() - Method in class edu.stanford.smi.protegex.owl.ui.resourcedisplay.ResourceDisplay
UpdateInferredTypesTask - Class in edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Aug 28, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
UpdateInferredTypesTask(ProtegeOWLReasoner) - Constructor for class edu.stanford.smi.protegex.owl.inference.protegeowl.task.digreasoner.UpdateInferredTypesTask
UpdateInferredTypesTask - Class in edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner
UpdateInferredTypesTask(ProtegeReasoner) - Constructor for class edu.stanford.smi.protegex.owl.inference.protegeowl.task.protegereasoner.UpdateInferredTypesTask
updateLabel() - Method in class edu.stanford.smi.protegex.owl.inference.ui.ReasonerProgressModalDialog
UpdateLineColumn(char) - Method in class edu.stanford.smi.protegex.owl.model.classparser.compact.JavaCharStream
UpdateLineColumn(char) - Method in class edu.stanford.smi.protegex.owl.model.classparser.dl.JavaCharStream
UpdateLineColumn(char) - Method in class edu.stanford.smi.protegex.owl.model.classparser.manchester.JavaCharStream
updateListUI() - Method in class edu.stanford.smi.protegex.owl.ui.metadatatab.alldifferent.AllDifferentSelectionPanel
updateMaximumCardinalityFacet(RDFSNamedClass, Slot) - Method in class edu.stanford.smi.protegex.owl.model.framestore.updater.CardinalityRestrictionUpdater
updateMinimumCardinalityFacet(RDFSNamedClass, Slot) - Method in class edu.stanford.smi.protegex.owl.model.framestore.updater.CardinalityRestrictionUpdater
updateModel() - Method in class edu.stanford.smi.protegex.owl.ui.individuals.AssertedTypesListPanel
updateRDFType(boolean, RDFSClass) - Method in class edu.stanford.smi.protegex.owl.model.impl.DefaultRDFProperty
updateRestrictions(OWLNamedClass, RDFProperty, Facet) - Method in class edu.stanford.smi.protegex.owl.model.framestore.updater.AllValuesFromRestrictionUpdater
updateRestrictions(OWLNamedClass, RDFProperty, Facet) - Method in class edu.stanford.smi.protegex.owl.model.framestore.updater.CardinalityRestrictionUpdater
updateRestrictions(OWLNamedClass, RDFProperty, Facet) - Method in class edu.stanford.smi.protegex.owl.model.framestore.updater.HasValueRestrictionUpdater
updateRestrictions(OWLNamedClass, RDFProperty, Facet) - Method in interface edu.stanford.smi.protegex.owl.model.framestore.updater.RestrictionUpdater
updateSyntax() - Method in class edu.stanford.smi.protegex.owl.ui.clsdesc.manchester.ManchesterOWLTextPane
updateSyntax(JTextComponent) - Static method in class edu.stanford.smi.protegex.owl.ui.code.OWLTextFormatter
  Replaces all occurences of special symbols with the corresponding unicode symbols.
updateSyntax(JTextComponent, OWLModel) - Static method in class edu.stanford.smi.protegex.owl.ui.code.OWLTextFormatter
  Replaces all occurences of special symbols with the corresponding unicode symbols.
updateSyntax(JTextComponent, OWLModel, Map) - Static method in class edu.stanford.smi.protegex.owl.ui.code.OWLTextFormatter
updateSyntax() - Method in class edu.stanford.smi.protegex.owl.ui.code.SymbolTextField
updateTextFieldAlignment(boolean) - Method in class edu.stanford.smi.protegex.owl.ui.components.singleliteral.AbstractSingleLiteralComponent
updateTextFieldAlignment(boolean) - Method in class edu.stanford.smi.protegex.owl.ui.components.singleliteral.SingleLiteralComponent
updateValues() - Method in class edu.stanford.smi.protegex.owl.ui.components.literaltable.LiteralTableModel
updateValues() - Method in class edu.stanford.smi.protegex.owl.ui.components.multiresource.MultiResourceListModel
updateValues() - Method in class edu.stanford.smi.protegex.owl.ui.widget.OWLDateWidget
updateVisibility(OWLModel) - Static method in class edu.stanford.smi.protegex.owl.model.util.XSDVisibility
UPPER_CASE - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLConstants.BuiltIns
  Deprecated.
UPPER_CASE - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.CoreBuiltIns
URI - Static variable in class edu.stanford.smi.protegex.owl.model.XSPNames
URI - Static variable in class edu.stanford.smi.protegex.owl.testing.constraints.SPARQLAssertTest
URI_BASE_APPEND_DAY_PROPERTY - Static variable in class edu.stanford.smi.protegex.owl.ui.metadatatab.OntologyURIPanel
URI_BASE_APPEND_MONTH_PROPERTY - Static variable in class edu.stanford.smi.protegex.owl.ui.metadatatab.OntologyURIPanel
URI_BASE_APPEND_YEAR_PROPERTY - Static variable in class edu.stanford.smi.protegex.owl.ui.metadatatab.OntologyURIPanel
URI_BASE_PROPERTY - Static variable in class edu.stanford.smi.protegex.owl.ui.metadatatab.OntologyURIPanel
uriField - Variable in class edu.stanford.smi.protegex.owl.ui.triplestore.AddTripleStorePanel
URLImportEntry - Class in edu.stanford.smi.protegex.owl.ui.metadatatab.imports.wizard
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Dec 7, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
URLImportEntry(URL) - Constructor for class edu.stanford.smi.protegex.owl.ui.metadatatab.imports.wizard.URLImportEntry
URLImportPage - Class in edu.stanford.smi.protegex.owl.ui.metadatatab.imports.wizard
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Oct 1, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
URLImportPage(ImportWizard) - Constructor for class edu.stanford.smi.protegex.owl.ui.metadatatab.imports.wizard.URLImportPage
URLInputSource - Class in edu.stanford.smi.protegex.owl.repository.util
URLInputSource(URL) - Constructor for class edu.stanford.smi.protegex.owl.repository.util.URLInputSource
usage - Variable in class edu.stanford.smi.protegex.owl.ui.search.FindUsageTableItem
USE_CACHE_HEURISTICS_PROP - Static variable in class edu.stanford.smi.protegex.owl.ui.widget.OWLUI
USE_INFERENCE - Static variable in class edu.stanford.smi.protegex.owl.ui.conditions.ConditionsTableModel
USE_OWL_CLASSES_TAB - Static variable in class edu.stanford.smi.protegex.owl.server.metaproject.OwlMetaProjectConstants
USE_PROPERTY_TAB - Static variable in class edu.stanford.smi.protegex.owl.server.metaproject.OwlMetaProjectConstants
USE_XML_ENTITIES_PROPERTY - Static variable in class edu.stanford.smi.protegex.owl.writer.rdfxml.util.ProtegeWriterSettings
USED_LANGUAGE - Static variable in class edu.stanford.smi.protegex.owl.model.ProtegeNames
useNewFormMechanism_DontUseThisMethod() - Static method in class edu.stanford.smi.protegex.owl.ui.forms.AbsoluteFormsLoader
  Don't use this method - just for testing right now
usePrefix(String) - Method in class edu.stanford.smi.protegex.owl.jena.graph.ProtegePrefixMapping
USER_DEFINED_DATATYPES - Static variable in class edu.stanford.smi.protegex.owl.ui.menu.preferences.ProtegeSettingsPanel
useStandalone - Static variable in class edu.stanford.smi.protegex.owl.jena.JenaKnowledgeBaseFactory
  A global flag that is used to select the default .pprj file for new project.
Util - Class in edu.stanford.smi.protegex.owl.writer.rdfxml.util
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: March 22, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm

  Various utility methods that are needed by the resource renderer and axiom renderer etc.
Util() - Constructor for class edu.stanford.smi.protegex.owl.writer.rdfxml.util.Util

## V

validateContents() - Method in class edu.stanford.smi.protegex.owl.jena.JenaKnowledgeBaseSourcesEditor
validateContents() - Method in class edu.stanford.smi.protegex.owl.ui.dialogs.SelectOWLClsesPanel
validateContents() - Method in class edu.stanford.smi.protegex.owl.ui.jena.AbstractOWLFilesWizardPage
validateContents() - Method in class edu.stanford.smi.protegex.owl.ui.projectview.ConfigureTabsPanel
validateContents() - Method in class edu.stanford.smi.protegex.owl.ui.triplestore.AddTripleStorePanel
validateContents() - Method in class edu.stanford.smi.protegex.owl.ui.triplestore.CreateTripleStorePanel
validateData() - Method in class edu.stanford.smi.protegex.owl.ui.repository.wizard.impl.FileSelectionWizardPanel
validateData() - Method in class edu.stanford.smi.protegex.owl.ui.repository.wizard.impl.HTTPRepositoryCreatorWizardPanel
validateData() - Method in class edu.stanford.smi.protegex.owl.ui.repository.wizard.impl.RelativeURLSpecificationWizardPanel
validateFileName() - Method in class edu.stanford.smi.protegex.owl.ui.repository.wizard.impl.FileBrowserPanel
validateText(String) - Method in class edu.stanford.smi.protegex.owl.ui.resourcedisplay.InstanceNameComponent
validateText(String) - Method in class edu.stanford.smi.protegex.owl.ui.resourcedisplay.InstanceNameEditor
ValidatorAction - Class in edu.stanford.smi.protegex.owl.ui.menu
  An Action that allows to validate the OWL sublanguage of the current Jena ontology.
ValidatorAction() - Constructor for class edu.stanford.smi.protegex.owl.ui.menu.ValidatorAction
ValidClassesPanel - Class in edu.stanford.smi.protegex.owl.ui.explorer.filter
  A JPanel that can be used to select the types of classes that shall be filtered by a DefaultExplorerFilter.
ValidClassesPanel(DefaultExplorerFilter) - Constructor for class edu.stanford.smi.protegex.owl.ui.explorer.filter.ValidClassesPanel
ValidPropertyPanel - Class in edu.stanford.smi.protegex.owl.ui.explorer.filter
  A JPanel to select a valid RDFProperty for a DefaultExplorerFilter.
ValidPropertyPanel(OWLModel, DefaultExplorerFilter) - Constructor for class edu.stanford.smi.protegex.owl.ui.explorer.filter.ValidPropertyPanel
VALUE - Static variable in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGVocabulary.Tell
VALUE - Static variable in interface edu.stanford.smi.protegex.owl.model.RDFNames.Slot
VALUE - Static variable in class edu.stanford.smi.protegex.owl.ui.search.FindUsageTableItem
valueChanged(ListSelectionEvent) - Method in class edu.stanford.smi.protegex.owl.swrl.ui.table.SWRLTable
valueForPathChanged(TreePath, Object) - Method in class edu.stanford.smi.protegex.owl.ui.existential.ExistentialTreeModel
valueListener - Variable in class edu.stanford.smi.protegex.owl.ui.widget.MultiWidgetPropertyWidget
valueOf(String) - Static method in enum edu.stanford.smi.protegex.owl.model.factory.OWLFactoryClassType
  Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum edu.stanford.smi.protegex.owl.server.OwlState
  Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum edu.stanford.smi.protegex.owl.swrl.model.factory.SWRLFrameTypeId
  Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum edu.stanford.smi.protegex.owl.ui.search.finder.Find.FindStatus
  Returns the enum constant of this type with the specified name.
VALUES - Static variable in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGVocabulary.Ask
VALUES - Static variable in interface edu.stanford.smi.protegex.owl.inference.dig.translator.DIGVocabulary.Response
values() - Static method in enum edu.stanford.smi.protegex.owl.model.factory.OWLFactoryClassType
  Returns an array containing the constants of this enum type, in the order they're declared.
values() - Static method in enum edu.stanford.smi.protegex.owl.server.OwlState
  Returns an array containing the constants of this enum type, in the order they're declared.
values() - Static method in enum edu.stanford.smi.protegex.owl.swrl.model.factory.SWRLFrameTypeId
  Returns an array containing the constants of this enum type, in the order they're declared.
values() - Static method in enum edu.stanford.smi.protegex.owl.ui.search.finder.Find.FindStatus
  Returns an array containing the constants of this enum type, in the order they're declared.
VALUES_FROM - Static variable in interface edu.stanford.smi.protegex.owl.model.OWLNames.Slot
valuesChanged() - Method in class edu.stanford.smi.protegex.owl.ui.components.datarangefield.DataRangeFieldComponent
valuesChanged() - Method in class edu.stanford.smi.protegex.owl.ui.components.literaltable.LiteralTableComponent
valuesChanged() - Method in class edu.stanford.smi.protegex.owl.ui.components.multiresource.MultiResourceComponent
valuesChanged() - Method in interface edu.stanford.smi.protegex.owl.ui.components.PropertyValuesComponent
valuesChanged() - Method in class edu.stanford.smi.protegex.owl.ui.components.rdflist.RDFListComponent
valuesChanged() - Method in class edu.stanford.smi.protegex.owl.ui.components.singleliteral.AbstractSingleLiteralComponent
valuesChanged() - Method in class edu.stanford.smi.protegex.owl.ui.components.singleresource.SingleResourceComponent
valuesChanged() - Method in class edu.stanford.smi.protegex.owl.ui.components.triples.AbstractTriplesComponent
VARIABLE - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.Cls
VARIABLE - Static variable in class edu.stanford.smi.protegex.owl.swrl.ui.icons.SWRLIcons
VERSION_INFO - Static variable in interface edu.stanford.smi.protegex.owl.model.OWLNames.Slot
VeryGoodCustomer - Interface in edu.stanford.smi.protegex.owlx.examples.javaDemo.model
  Generated by Protege-OWL (http://protege.stanford.edu/plugins/owl).
VIEW - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
VIEW_OVERLAY - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
viewAction - Variable in class edu.stanford.smi.protegex.owl.ui.cls.AssertedClassesPanel
viewAction - Variable in class edu.stanford.smi.protegex.owl.ui.components.singleliteral.AbstractSingleLiteralComponent
ViewPluginAction - Class in edu.stanford.smi.protegex.owl.swrl.ui.actions
ViewPluginAction(String, String, Icon, SWRLTab, OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.swrl.ui.actions.ViewPluginAction
viewProperty(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.ui.clsproperties.PropertyRestrictionsTreeWidget
ViewRuleAction - Class in edu.stanford.smi.protegex.owl.swrl.ui.table
ViewRuleAction(SWRLTable) - Constructor for class edu.stanford.smi.protegex.owl.swrl.ui.table.ViewRuleAction
visibilityChanged(RDFResource, FrameEvent) - Method in class edu.stanford.smi.protegex.owl.model.event.PropertyValueAdapter
visibilityChanged(RDFResource) - Method in class edu.stanford.smi.protegex.owl.model.event.PropertyValueAdapter
visibilityChanged(FrameEvent) - Method in class edu.stanford.smi.protegex.owl.model.event.PropertyValueAdapter
  Deprecated.
visibilityChanged(RDFResource) - Method in interface edu.stanford.smi.protegex.owl.model.event.PropertyValueListener
  Called after the visibility of a resource has changed.
visibilityChanged(FrameEvent) - Method in interface edu.stanford.smi.protegex.owl.model.event.ProtegeFrameListener
  Deprecated.
VisibilityPanel - Class in edu.stanford.smi.protegex.owl.ui.menu.preferences
  A JComponent that allows to specify which system classes are hidden or visible.
VisibilityPanel(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.ui.menu.preferences.VisibilityPanel
Visitable - Interface in edu.stanford.smi.protegex.owl.model.visitor
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Jan 8, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
VisitorUtil - Class in edu.stanford.smi.protegex.owl.model.visitor
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Jan 8, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
VisitorUtil() - Constructor for class edu.stanford.smi.protegex.owl.model.visitor.VisitorUtil
visitOWLAllDifferent(OWLAllDifferent) - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.dl.DLSymbolGenerator
visitOWLAllDifferent(OWLAllDifferent) - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.dl.DLSyntaxBrowserTextGenerator
visitOWLAllDifferent(OWLAllDifferent) - Method in class edu.stanford.smi.protegex.owl.model.util.ResourceCopier
visitOWLAllDifferent(OWLAllDifferent) - Method in interface edu.stanford.smi.protegex.owl.model.visitor.OWLModelVisitor
visitOWLAllDifferent(OWLAllDifferent) - Method in class edu.stanford.smi.protegex.owl.model.visitor.OWLModelVisitorAdapter
visitOWLAllDifferent(OWLAllDifferent) - Method in class edu.stanford.smi.protegex.owl.writer.rdfxml.renderer.RDFResourceRenderer
  Renders and instance of owl:AllDifferent, as an rdf collection (rdf:parseType="Collection") of the distinct members.
visitOWLAllValuesFrom(OWLAllValuesFrom) - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.dl.DLSymbolGenerator
visitOWLAllValuesFrom(OWLAllValuesFrom) - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.dl.DLSyntaxBrowserTextGenerator
visitOWLAllValuesFrom(OWLAllValuesFrom) - Method in class edu.stanford.smi.protegex.owl.model.util.DLExpressivityChecker
visitOWLAllValuesFrom(OWLAllValuesFrom) - Method in class edu.stanford.smi.protegex.owl.model.util.ModelMetrics
visitOWLAllValuesFrom(OWLAllValuesFrom) - Method in class edu.stanford.smi.protegex.owl.model.util.ResourceCopier
visitOWLAllValuesFrom(OWLAllValuesFrom) - Method in interface edu.stanford.smi.protegex.owl.model.visitor.OWLModelVisitor
visitOWLAllValuesFrom(OWLAllValuesFrom) - Method in class edu.stanford.smi.protegex.owl.model.visitor.OWLModelVisitorAdapter
visitOWLAllValuesFrom(OWLAllValuesFrom) - Method in class edu.stanford.smi.protegex.owl.writer.rdfxml.renderer.RDFAxiomRenderer.RenderableAxiomsChecker
visitOWLAllValuesFrom(OWLAllValuesFrom) - Method in class edu.stanford.smi.protegex.owl.writer.rdfxml.renderer.RDFAxiomRenderer
visitOWLAllValuesFrom(OWLAllValuesFrom) - Method in class edu.stanford.smi.protegex.owl.writer.rdfxml.renderer.RDFResourceRenderer
  Renders an allValuesFrom, or universal restriction and its various properties such as owl:onProperty, owl:allValuesFrom
visitOWLCardinality(OWLCardinality) - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.dl.DLSymbolGenerator
visitOWLCardinality(OWLCardinality) - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.dl.DLSyntaxBrowserTextGenerator
visitOWLCardinality(OWLCardinality) - Method in class edu.stanford.smi.protegex.owl.model.util.DLExpressivityChecker
visitOWLCardinality(OWLCardinality) - Method in class edu.stanford.smi.protegex.owl.model.util.ModelMetrics
visitOWLCardinality(OWLCardinality) - Method in class edu.stanford.smi.protegex.owl.model.util.ResourceCopier
visitOWLCardinality(OWLCardinality) - Method in interface edu.stanford.smi.protegex.owl.model.visitor.OWLModelVisitor
visitOWLCardinality(OWLCardinality) - Method in class edu.stanford.smi.protegex.owl.model.visitor.OWLModelVisitorAdapter
visitOWLCardinality(OWLCardinality) - Method in class edu.stanford.smi.protegex.owl.ui.existential.ExistentialFillerProvider
visitOWLCardinality(OWLCardinality) - Method in class edu.stanford.smi.protegex.owl.writer.rdfxml.renderer.RDFAxiomRenderer.RenderableAxiomsChecker
visitOWLCardinality(OWLCardinality) - Method in class edu.stanford.smi.protegex.owl.writer.rdfxml.renderer.RDFAxiomRenderer
visitOWLCardinality(OWLCardinality) - Method in class edu.stanford.smi.protegex.owl.writer.rdfxml.renderer.RDFResourceRenderer
  Renders an owl:Cardinality restriction using its associated properties such as owl:onProperty.
visitOWLComplementClass(OWLComplementClass) - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.dl.DLSymbolGenerator
visitOWLComplementClass(OWLComplementClass) - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.dl.DLSyntaxBrowserTextGenerator
visitOWLComplementClass(OWLComplementClass) - Method in class edu.stanford.smi.protegex.owl.model.util.DLExpressivityChecker
visitOWLComplementClass(OWLComplementClass) - Method in class edu.stanford.smi.protegex.owl.model.util.ModelMetrics
visitOWLComplementClass(OWLComplementClass) - Method in class edu.stanford.smi.protegex.owl.model.util.ResourceCopier
visitOWLComplementClass(OWLComplementClass) - Method in interface edu.stanford.smi.protegex.owl.model.visitor.OWLModelVisitor
visitOWLComplementClass(OWLComplementClass) - Method in class edu.stanford.smi.protegex.owl.model.visitor.OWLModelVisitorAdapter
visitOWLComplementClass(OWLComplementClass) - Method in class edu.stanford.smi.protegex.owl.writer.rdfxml.renderer.RDFAxiomRenderer.RenderableAxiomsChecker
visitOWLComplementClass(OWLComplementClass) - Method in class edu.stanford.smi.protegex.owl.writer.rdfxml.renderer.RDFAxiomRenderer
visitOWLComplementClass(OWLComplementClass) - Method in class edu.stanford.smi.protegex.owl.writer.rdfxml.renderer.RDFResourceRenderer
  Renders an owl:ComplementClass.
visitOWLDataRange(OWLDataRange) - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.dl.DLSymbolGenerator
visitOWLDataRange(OWLDataRange) - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.dl.DLSyntaxBrowserTextGenerator
visitOWLDataRange(OWLDataRange) - Method in class edu.stanford.smi.protegex.owl.model.util.DLExpressivityChecker
visitOWLDataRange(OWLDataRange) - Method in class edu.stanford.smi.protegex.owl.model.util.ResourceCopier
visitOWLDataRange(OWLDataRange) - Method in interface edu.stanford.smi.protegex.owl.model.visitor.OWLModelVisitor
visitOWLDataRange(OWLDataRange) - Method in class edu.stanford.smi.protegex.owl.model.visitor.OWLModelVisitorAdapter
visitOWLDataRange(OWLDataRange) - Method in class edu.stanford.smi.protegex.owl.writer.rdfxml.renderer.RDFResourceRenderer
visitOWLDatatypeProperty(OWLDatatypeProperty) - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.dl.DLSymbolGenerator
visitOWLDatatypeProperty(OWLDatatypeProperty) - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.dl.DLSyntaxBrowserTextGenerator
visitOWLDatatypeProperty(OWLDatatypeProperty) - Method in class edu.stanford.smi.protegex.owl.model.util.DLExpressivityChecker
visitOWLDatatypeProperty(OWLDatatypeProperty) - Method in class edu.stanford.smi.protegex.owl.model.util.ModelMetrics
visitOWLDatatypeProperty(OWLDatatypeProperty) - Method in class edu.stanford.smi.protegex.owl.model.util.ResourceCopier
visitOWLDatatypeProperty(OWLDatatypeProperty) - Method in interface edu.stanford.smi.protegex.owl.model.visitor.OWLModelVisitor
visitOWLDatatypeProperty(OWLDatatypeProperty) - Method in class edu.stanford.smi.protegex.owl.model.visitor.OWLModelVisitorAdapter
visitOWLDatatypeProperty(OWLDatatypeProperty) - Method in class edu.stanford.smi.protegex.owl.writer.rdfxml.renderer.RDFAxiomRenderer.RenderableAxiomsChecker
visitOWLDatatypeProperty(OWLDatatypeProperty) - Method in class edu.stanford.smi.protegex.owl.writer.rdfxml.renderer.RDFAxiomRenderer
visitOWLDatatypeProperty(OWLDatatypeProperty) - Method in class edu.stanford.smi.protegex.owl.writer.rdfxml.util.InlineResourceChecker
visitOWLEnumeratedClass(OWLEnumeratedClass) - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.dl.DLSymbolGenerator
visitOWLEnumeratedClass(OWLEnumeratedClass) - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.dl.DLSyntaxBrowserTextGenerator
visitOWLEnumeratedClass(OWLEnumeratedClass) - Method in class edu.stanford.smi.protegex.owl.model.util.DLExpressivityChecker
visitOWLEnumeratedClass(OWLEnumeratedClass) - Method in class edu.stanford.smi.protegex.owl.model.util.ModelMetrics
visitOWLEnumeratedClass(OWLEnumeratedClass) - Method in class edu.stanford.smi.protegex.owl.model.util.ResourceCopier
visitOWLEnumeratedClass(OWLEnumeratedClass) - Method in interface edu.stanford.smi.protegex.owl.model.visitor.OWLModelVisitor
visitOWLEnumeratedClass(OWLEnumeratedClass) - Method in class edu.stanford.smi.protegex.owl.model.visitor.OWLModelVisitorAdapter
visitOWLEnumeratedClass(OWLEnumeratedClass) - Method in class edu.stanford.smi.protegex.owl.writer.rdfxml.renderer.RDFAxiomRenderer.RenderableAxiomsChecker
visitOWLEnumeratedClass(OWLEnumeratedClass) - Method in class edu.stanford.smi.protegex.owl.writer.rdfxml.renderer.RDFAxiomRenderer
visitOWLEnumeratedClass(OWLEnumeratedClass) - Method in class edu.stanford.smi.protegex.owl.writer.rdfxml.renderer.RDFResourceRenderer
  Renders and owl:oneOf (enumerated) class.
visitOWLHasValue(OWLHasValue) - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.dl.DLSymbolGenerator
visitOWLHasValue(OWLHasValue) - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.dl.DLSyntaxBrowserTextGenerator
visitOWLHasValue(OWLHasValue) - Method in class edu.stanford.smi.protegex.owl.model.util.DLExpressivityChecker
visitOWLHasValue(OWLHasValue) - Method in class edu.stanford.smi.protegex.owl.model.util.ModelMetrics
visitOWLHasValue(OWLHasValue) - Method in class edu.stanford.smi.protegex.owl.model.util.ResourceCopier
visitOWLHasValue(OWLHasValue) - Method in interface edu.stanford.smi.protegex.owl.model.visitor.OWLModelVisitor
visitOWLHasValue(OWLHasValue) - Method in class edu.stanford.smi.protegex.owl.model.visitor.OWLModelVisitorAdapter
visitOWLHasValue(OWLHasValue) - Method in class edu.stanford.smi.protegex.owl.writer.rdfxml.renderer.RDFAxiomRenderer.RenderableAxiomsChecker
visitOWLHasValue(OWLHasValue) - Method in class edu.stanford.smi.protegex.owl.writer.rdfxml.renderer.RDFAxiomRenderer
visitOWLHasValue(OWLHasValue) - Method in class edu.stanford.smi.protegex.owl.writer.rdfxml.renderer.RDFResourceRenderer
visitOWLIndividual(OWLIndividual) - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.dl.DLSymbolGenerator
visitOWLIndividual(OWLIndividual) - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.dl.DLSyntaxBrowserTextGenerator
visitOWLIndividual(OWLIndividual) - Method in class edu.stanford.smi.protegex.owl.model.util.ModelMetrics
visitOWLIndividual(OWLIndividual) - Method in class edu.stanford.smi.protegex.owl.model.util.ResourceCopier
visitOWLIndividual(OWLIndividual) - Method in interface edu.stanford.smi.protegex.owl.model.visitor.OWLModelVisitor
visitOWLIndividual(OWLIndividual) - Method in class edu.stanford.smi.protegex.owl.model.visitor.OWLModelVisitorAdapter
visitOWLIndividual(OWLIndividual) - Method in class edu.stanford.smi.protegex.owl.writer.rdfxml.renderer.RDFAxiomRenderer.RenderableAxiomsChecker
visitOWLIndividual(OWLIndividual) - Method in class edu.stanford.smi.protegex.owl.writer.rdfxml.renderer.RDFAxiomRenderer
visitOWLIndividual(OWLIndividual) - Method in class edu.stanford.smi.protegex.owl.writer.rdfxml.renderer.RDFResourceRenderer
visitOWLIndividual(OWLIndividual) - Method in class edu.stanford.smi.protegex.owl.writer.rdfxml.util.InlineResourceChecker
visitOWLIntersectionClass(OWLIntersectionClass) - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.dl.DLSymbolGenerator
visitOWLIntersectionClass(OWLIntersectionClass) - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.dl.DLSyntaxBrowserTextGenerator
visitOWLIntersectionClass(OWLIntersectionClass) - Method in class edu.stanford.smi.protegex.owl.model.util.DLExpressivityChecker
visitOWLIntersectionClass(OWLIntersectionClass) - Method in class edu.stanford.smi.protegex.owl.model.util.ModelMetrics
visitOWLIntersectionClass(OWLIntersectionClass) - Method in class edu.stanford.smi.protegex.owl.model.util.ResourceCopier
visitOWLIntersectionClass(OWLIntersectionClass) - Method in interface edu.stanford.smi.protegex.owl.model.visitor.OWLModelVisitor
visitOWLIntersectionClass(OWLIntersectionClass) - Method in class edu.stanford.smi.protegex.owl.model.visitor.OWLModelVisitorAdapter
visitOWLIntersectionClass(OWLIntersectionClass) - Method in class edu.stanford.smi.protegex.owl.ui.existential.ExistentialFillerProvider
visitOWLIntersectionClass(OWLIntersectionClass) - Method in class edu.stanford.smi.protegex.owl.writer.rdfxml.renderer.RDFAxiomRenderer.RenderableAxiomsChecker
visitOWLIntersectionClass(OWLIntersectionClass) - Method in class edu.stanford.smi.protegex.owl.writer.rdfxml.renderer.RDFAxiomRenderer
visitOWLIntersectionClass(OWLIntersectionClass) - Method in class edu.stanford.smi.protegex.owl.writer.rdfxml.renderer.RDFResourceRenderer
visitOWLMaxCardinality(OWLMaxCardinality) - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.dl.DLSymbolGenerator
visitOWLMaxCardinality(OWLMaxCardinality) - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.dl.DLSyntaxBrowserTextGenerator
visitOWLMaxCardinality(OWLMaxCardinality) - Method in class edu.stanford.smi.protegex.owl.model.util.DLExpressivityChecker
visitOWLMaxCardinality(OWLMaxCardinality) - Method in class edu.stanford.smi.protegex.owl.model.util.ModelMetrics
visitOWLMaxCardinality(OWLMaxCardinality) - Method in class edu.stanford.smi.protegex.owl.model.util.ResourceCopier
visitOWLMaxCardinality(OWLMaxCardinality) - Method in interface edu.stanford.smi.protegex.owl.model.visitor.OWLModelVisitor
visitOWLMaxCardinality(OWLMaxCardinality) - Method in class edu.stanford.smi.protegex.owl.model.visitor.OWLModelVisitorAdapter
visitOWLMaxCardinality(OWLMaxCardinality) - Method in class edu.stanford.smi.protegex.owl.writer.rdfxml.renderer.RDFAxiomRenderer.RenderableAxiomsChecker
visitOWLMaxCardinality(OWLMaxCardinality) - Method in class edu.stanford.smi.protegex.owl.writer.rdfxml.renderer.RDFAxiomRenderer
visitOWLMaxCardinality(OWLMaxCardinality) - Method in class edu.stanford.smi.protegex.owl.writer.rdfxml.renderer.RDFResourceRenderer
visitOWLMinCardinality(OWLMinCardinality) - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.dl.DLSymbolGenerator
visitOWLMinCardinality(OWLMinCardinality) - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.dl.DLSyntaxBrowserTextGenerator
visitOWLMinCardinality(OWLMinCardinality) - Method in class edu.stanford.smi.protegex.owl.model.util.DLExpressivityChecker
visitOWLMinCardinality(OWLMinCardinality) - Method in class edu.stanford.smi.protegex.owl.model.util.ModelMetrics
visitOWLMinCardinality(OWLMinCardinality) - Method in class edu.stanford.smi.protegex.owl.model.util.ResourceCopier
visitOWLMinCardinality(OWLMinCardinality) - Method in interface edu.stanford.smi.protegex.owl.model.visitor.OWLModelVisitor
visitOWLMinCardinality(OWLMinCardinality) - Method in class edu.stanford.smi.protegex.owl.model.visitor.OWLModelVisitorAdapter
visitOWLMinCardinality(OWLMinCardinality) - Method in class edu.stanford.smi.protegex.owl.ui.existential.ExistentialFillerProvider
visitOWLMinCardinality(OWLMinCardinality) - Method in class edu.stanford.smi.protegex.owl.writer.rdfxml.renderer.RDFAxiomRenderer.RenderableAxiomsChecker
visitOWLMinCardinality(OWLMinCardinality) - Method in class edu.stanford.smi.protegex.owl.writer.rdfxml.renderer.RDFAxiomRenderer
visitOWLMinCardinality(OWLMinCardinality) - Method in class edu.stanford.smi.protegex.owl.writer.rdfxml.renderer.RDFResourceRenderer
visitOWLNamedClass(OWLNamedClass) - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.dl.DLSymbolGenerator
visitOWLNamedClass(OWLNamedClass) - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.dl.DLSyntaxBrowserTextGenerator
visitOWLNamedClass(OWLNamedClass) - Method in class edu.stanford.smi.protegex.owl.model.util.DLExpressivityChecker
visitOWLNamedClass(OWLNamedClass) - Method in class edu.stanford.smi.protegex.owl.model.util.ModelMetrics
visitOWLNamedClass(OWLNamedClass) - Method in class edu.stanford.smi.protegex.owl.model.util.ResourceCopier
visitOWLNamedClass(OWLNamedClass) - Method in interface edu.stanford.smi.protegex.owl.model.visitor.OWLModelVisitor
visitOWLNamedClass(OWLNamedClass) - Method in class edu.stanford.smi.protegex.owl.model.visitor.OWLModelVisitorAdapter
visitOWLNamedClass(OWLNamedClass) - Method in class edu.stanford.smi.protegex.owl.ui.existential.ExistentialFillerProvider
visitOWLNamedClass(OWLNamedClass) - Method in class edu.stanford.smi.protegex.owl.writer.rdfxml.renderer.RDFAxiomRenderer.RenderableAxiomsChecker
visitOWLNamedClass(OWLNamedClass) - Method in class edu.stanford.smi.protegex.owl.writer.rdfxml.renderer.RDFAxiomRenderer
visitOWLNamedClass(OWLNamedClass) - Method in class edu.stanford.smi.protegex.owl.writer.rdfxml.renderer.RDFResourceRenderer
visitOWLNamedClass(OWLNamedClass) - Method in class edu.stanford.smi.protegex.owl.writer.rdfxml.util.InlineResourceChecker
visitOWLObjectProperty(OWLObjectProperty) - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.dl.DLSymbolGenerator
visitOWLObjectProperty(OWLObjectProperty) - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.dl.DLSyntaxBrowserTextGenerator
visitOWLObjectProperty(OWLObjectProperty) - Method in class edu.stanford.smi.protegex.owl.model.util.DLExpressivityChecker
visitOWLObjectProperty(OWLObjectProperty) - Method in class edu.stanford.smi.protegex.owl.model.util.ModelMetrics
visitOWLObjectProperty(OWLObjectProperty) - Method in class edu.stanford.smi.protegex.owl.model.util.ResourceCopier
visitOWLObjectProperty(OWLObjectProperty) - Method in interface edu.stanford.smi.protegex.owl.model.visitor.OWLModelVisitor
visitOWLObjectProperty(OWLObjectProperty) - Method in class edu.stanford.smi.protegex.owl.model.visitor.OWLModelVisitorAdapter
visitOWLObjectProperty(OWLObjectProperty) - Method in class edu.stanford.smi.protegex.owl.writer.rdfxml.renderer.RDFAxiomRenderer.RenderableAxiomsChecker
visitOWLObjectProperty(OWLObjectProperty) - Method in class edu.stanford.smi.protegex.owl.writer.rdfxml.renderer.RDFAxiomRenderer
visitOWLObjectProperty(OWLObjectProperty) - Method in class edu.stanford.smi.protegex.owl.writer.rdfxml.util.InlineResourceChecker
visitOWLOntology(OWLOntology) - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.dl.DLSymbolGenerator
visitOWLOntology(OWLOntology) - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.dl.DLSyntaxBrowserTextGenerator
visitOWLOntology(OWLOntology) - Method in class edu.stanford.smi.protegex.owl.model.util.ResourceCopier
visitOWLOntology(OWLOntology) - Method in interface edu.stanford.smi.protegex.owl.model.visitor.OWLModelVisitor
visitOWLOntology(OWLOntology) - Method in class edu.stanford.smi.protegex.owl.model.visitor.OWLModelVisitorAdapter
visitOWLOntology(OWLOntology) - Method in class edu.stanford.smi.protegex.owl.writer.rdfxml.renderer.RDFResourceRenderer
visitOWLOntology(OWLOntology) - Method in class edu.stanford.smi.protegex.owl.writer.rdfxml.util.InlineResourceChecker
visitOWLSomeValuesFrom(OWLSomeValuesFrom) - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.dl.DLSymbolGenerator
visitOWLSomeValuesFrom(OWLSomeValuesFrom) - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.dl.DLSyntaxBrowserTextGenerator
visitOWLSomeValuesFrom(OWLSomeValuesFrom) - Method in class edu.stanford.smi.protegex.owl.model.util.DLExpressivityChecker
visitOWLSomeValuesFrom(OWLSomeValuesFrom) - Method in class edu.stanford.smi.protegex.owl.model.util.ModelMetrics
visitOWLSomeValuesFrom(OWLSomeValuesFrom) - Method in class edu.stanford.smi.protegex.owl.model.util.ResourceCopier
visitOWLSomeValuesFrom(OWLSomeValuesFrom) - Method in interface edu.stanford.smi.protegex.owl.model.visitor.OWLModelVisitor
visitOWLSomeValuesFrom(OWLSomeValuesFrom) - Method in class edu.stanford.smi.protegex.owl.model.visitor.OWLModelVisitorAdapter
visitOWLSomeValuesFrom(OWLSomeValuesFrom) - Method in class edu.stanford.smi.protegex.owl.ui.existential.ExistentialFillerProvider
visitOWLSomeValuesFrom(OWLSomeValuesFrom) - Method in class edu.stanford.smi.protegex.owl.writer.rdfxml.renderer.RDFAxiomRenderer.RenderableAxiomsChecker
visitOWLSomeValuesFrom(OWLSomeValuesFrom) - Method in class edu.stanford.smi.protegex.owl.writer.rdfxml.renderer.RDFAxiomRenderer
visitOWLSomeValuesFrom(OWLSomeValuesFrom) - Method in class edu.stanford.smi.protegex.owl.writer.rdfxml.renderer.RDFResourceRenderer
visitOWLUnionClass(OWLUnionClass) - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.dl.DLSymbolGenerator
visitOWLUnionClass(OWLUnionClass) - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.dl.DLSyntaxBrowserTextGenerator
visitOWLUnionClass(OWLUnionClass) - Method in class edu.stanford.smi.protegex.owl.model.util.DLExpressivityChecker
visitOWLUnionClass(OWLUnionClass) - Method in class edu.stanford.smi.protegex.owl.model.util.ModelMetrics
visitOWLUnionClass(OWLUnionClass) - Method in class edu.stanford.smi.protegex.owl.model.util.ResourceCopier
visitOWLUnionClass(OWLUnionClass) - Method in interface edu.stanford.smi.protegex.owl.model.visitor.OWLModelVisitor
visitOWLUnionClass(OWLUnionClass) - Method in class edu.stanford.smi.protegex.owl.model.visitor.OWLModelVisitorAdapter
visitOWLUnionClass(OWLUnionClass) - Method in class edu.stanford.smi.protegex.owl.writer.rdfxml.renderer.RDFAxiomRenderer.RenderableAxiomsChecker
visitOWLUnionClass(OWLUnionClass) - Method in class edu.stanford.smi.protegex.owl.writer.rdfxml.renderer.RDFAxiomRenderer
visitOWLUnionClass(OWLUnionClass) - Method in class edu.stanford.smi.protegex.owl.writer.rdfxml.renderer.RDFResourceRenderer
visitRDFDatatype(RDFSDatatype) - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.dl.DLSymbolGenerator
visitRDFDatatype(RDFSDatatype) - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.dl.DLSyntaxBrowserTextGenerator
visitRDFDatatype(RDFSDatatype) - Method in class edu.stanford.smi.protegex.owl.model.util.ResourceCopier
visitRDFDatatype(RDFSDatatype) - Method in interface edu.stanford.smi.protegex.owl.model.visitor.OWLModelVisitor
visitRDFDatatype(RDFSDatatype) - Method in class edu.stanford.smi.protegex.owl.model.visitor.OWLModelVisitorAdapter
visitRDFDatatype(RDFSDatatype) - Method in class edu.stanford.smi.protegex.owl.writer.rdfxml.renderer.RDFResourceRenderer
visitRDFDatatype(RDFSDatatype) - Method in class edu.stanford.smi.protegex.owl.writer.rdfxml.util.InlineResourceChecker
visitRDFExternalResource(RDFExternalResource) - Method in class edu.stanford.smi.protegex.owl.writer.rdfxml.renderer.RDFResourceRenderer
visitRDFExternalResource(RDFExternalResource) - Method in class edu.stanford.smi.protegex.owl.writer.rdfxml.util.InlineResourceChecker
visitRDFIndividual(RDFIndividual) - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.dl.DLSymbolGenerator
visitRDFIndividual(RDFIndividual) - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.dl.DLSyntaxBrowserTextGenerator
visitRDFIndividual(RDFIndividual) - Method in class edu.stanford.smi.protegex.owl.model.util.ResourceCopier
visitRDFIndividual(RDFIndividual) - Method in interface edu.stanford.smi.protegex.owl.model.visitor.OWLModelVisitor
visitRDFIndividual(RDFIndividual) - Method in class edu.stanford.smi.protegex.owl.model.visitor.OWLModelVisitorAdapter
visitRDFIndividual(RDFIndividual) - Method in class edu.stanford.smi.protegex.owl.writer.rdfxml.renderer.RDFAxiomRenderer.RenderableAxiomsChecker
visitRDFIndividual(RDFIndividual) - Method in class edu.stanford.smi.protegex.owl.writer.rdfxml.renderer.RDFAxiomRenderer
visitRDFIndividual(RDFIndividual) - Method in class edu.stanford.smi.protegex.owl.writer.rdfxml.renderer.RDFResourceRenderer
visitRDFIndividual(RDFIndividual) - Method in class edu.stanford.smi.protegex.owl.writer.rdfxml.util.InlineResourceChecker
visitRDFList(RDFList) - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.dl.DLSymbolGenerator
visitRDFList(RDFList) - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.dl.DLSyntaxBrowserTextGenerator
visitRDFList(RDFList) - Method in class edu.stanford.smi.protegex.owl.model.util.ResourceCopier
visitRDFList(RDFList) - Method in interface edu.stanford.smi.protegex.owl.model.visitor.OWLModelVisitor
visitRDFList(RDFList) - Method in class edu.stanford.smi.protegex.owl.model.visitor.OWLModelVisitorAdapter
visitRDFList(RDFList) - Method in class edu.stanford.smi.protegex.owl.writer.rdfxml.renderer.RDFResourceRenderer
visitRDFProperty(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.dl.DLSymbolGenerator
visitRDFProperty(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.dl.DLSyntaxBrowserTextGenerator
visitRDFProperty(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.model.util.ResourceCopier
visitRDFProperty(RDFProperty) - Method in interface edu.stanford.smi.protegex.owl.model.visitor.OWLModelVisitor
visitRDFProperty(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.model.visitor.OWLModelVisitorAdapter
visitRDFProperty(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.writer.rdfxml.renderer.RDFAxiomRenderer.RenderableAxiomsChecker
visitRDFProperty(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.writer.rdfxml.renderer.RDFAxiomRenderer
visitRDFProperty(RDFProperty) - Method in class edu.stanford.smi.protegex.owl.writer.rdfxml.util.InlineResourceChecker
visitRDFResources(Collection, OWLModelVisitor) - Static method in class edu.stanford.smi.protegex.owl.model.visitor.VisitorUtil
  Visits the `RDFResource`s in the specified collection using the specified visitor.
visitRDFSLiteral(RDFSLiteral) - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.dl.DLSymbolGenerator
visitRDFSLiteral(RDFSLiteral) - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.dl.DLSyntaxBrowserTextGenerator
visitRDFSLiteral(RDFSLiteral) - Method in class edu.stanford.smi.protegex.owl.model.util.ResourceCopier
visitRDFSLiteral(RDFSLiteral) - Method in interface edu.stanford.smi.protegex.owl.model.visitor.OWLModelVisitor
visitRDFSLiteral(RDFSLiteral) - Method in class edu.stanford.smi.protegex.owl.model.visitor.OWLModelVisitorAdapter
visitRDFSNamedClass(RDFSNamedClass) - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.dl.DLSymbolGenerator
visitRDFSNamedClass(RDFSNamedClass) - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.dl.DLSyntaxBrowserTextGenerator
visitRDFSNamedClass(RDFSNamedClass) - Method in class edu.stanford.smi.protegex.owl.model.util.ResourceCopier
visitRDFSNamedClass(RDFSNamedClass) - Method in interface edu.stanford.smi.protegex.owl.model.visitor.OWLModelVisitor
visitRDFSNamedClass(RDFSNamedClass) - Method in class edu.stanford.smi.protegex.owl.model.visitor.OWLModelVisitorAdapter
visitRDFSNamedClass(RDFSNamedClass) - Method in class edu.stanford.smi.protegex.owl.writer.rdfxml.renderer.RDFAxiomRenderer.RenderableAxiomsChecker
visitRDFSNamedClass(RDFSNamedClass) - Method in class edu.stanford.smi.protegex.owl.writer.rdfxml.renderer.RDFAxiomRenderer
visitRDFSNamedClass(RDFSNamedClass) - Method in class edu.stanford.smi.protegex.owl.writer.rdfxml.renderer.RDFResourceRenderer
visitRDFSNamedClass(RDFSNamedClass) - Method in class edu.stanford.smi.protegex.owl.writer.rdfxml.util.InlineResourceChecker
visitRDFUntypedResource(RDFUntypedResource) - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.dl.DLSymbolGenerator
visitRDFUntypedResource(RDFUntypedResource) - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.dl.DLSyntaxBrowserTextGenerator
visitRDFUntypedResource(RDFUntypedResource) - Method in class edu.stanford.smi.protegex.owl.model.util.ResourceCopier
visitRDFUntypedResource(RDFUntypedResource) - Method in interface edu.stanford.smi.protegex.owl.model.visitor.OWLModelVisitor
visitRDFUntypedResource(RDFUntypedResource) - Method in class edu.stanford.smi.protegex.owl.model.visitor.OWLModelVisitorAdapter
visitResourceToBeReferenced(RDFResource) - Method in class edu.stanford.smi.protegex.owl.model.util.ResourceCopier
visitSWRLAtomListIndividual(SWRLAtomList) - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.dl.DLSymbolGenerator
visitSWRLAtomListIndividual(SWRLAtomList) - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.dl.DLSyntaxBrowserTextGenerator
visitSWRLAtomListIndividual(SWRLAtomList) - Method in interface edu.stanford.smi.protegex.owl.model.visitor.OWLModelVisitor
visitSWRLAtomListIndividual(SWRLAtomList) - Method in class edu.stanford.smi.protegex.owl.model.visitor.OWLModelVisitorAdapter
visitSWRLAtomListIndividual(SWRLAtomList) - Method in class edu.stanford.smi.protegex.owl.writer.rdfxml.renderer.RDFResourceRenderer
visitSWRLIndividual(SWRLIndividual) - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.dl.DLSymbolGenerator
visitSWRLIndividual(SWRLIndividual) - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.dl.DLSyntaxBrowserTextGenerator
visitSWRLIndividual(SWRLIndividual) - Method in interface edu.stanford.smi.protegex.owl.model.visitor.OWLModelVisitor
visitSWRLIndividual(SWRLIndividual) - Method in class edu.stanford.smi.protegex.owl.model.visitor.OWLModelVisitorAdapter
visitSWRLIndividual(SWRLIndividual) - Method in class edu.stanford.smi.protegex.owl.writer.rdfxml.renderer.RDFAxiomRenderer
visitSWRLIndividual(SWRLIndividual) - Method in class edu.stanford.smi.protegex.owl.writer.rdfxml.renderer.RDFResourceRenderer
visitUserDefinedOWLNamedClasses() - Method in class edu.stanford.smi.protegex.owl.model.visitor.OWLModelVisitorHelper
visitUserDefinedOWLProperties() - Method in class edu.stanford.smi.protegex.owl.model.visitor.OWLModelVisitorHelper
visitUserDefinedRDFProperties() - Method in class edu.stanford.smi.protegex.owl.model.visitor.OWLModelVisitorHelper
visitUserDefinedRDFSNamedClasses() - Method in class edu.stanford.smi.protegex.owl.model.visitor.OWLModelVisitorHelper
Vocab - Interface in edu.stanford.smi.protegex.owl.writer.rdfxml.renderer
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Mar 22, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm

## W

waitForSearchComplete() - Method in class edu.stanford.smi.protegex.owl.ui.search.finder.BasicFind
waitForSearchComplete() - Method in interface edu.stanford.smi.protegex.owl.ui.search.finder.Find
WarningMessageLogRecord - Class in edu.stanford.smi.protegex.owl.inference.protegeowl.log
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Sep 13, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
WarningMessageLogRecord(RDFResource, String, ReasonerLogRecord) - Constructor for class edu.stanford.smi.protegex.owl.inference.protegeowl.log.WarningMessageLogRecord
WarningMessageTestResult - Class in edu.stanford.smi.protegex.owl.inference.protegeowl.log
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Sep 21, 2004

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
WarningMessageTestResult(WarningMessageLogRecord) - Constructor for class edu.stanford.smi.protegex.owl.inference.protegeowl.log.WarningMessageTestResult
Widget - Static variable in class edu.stanford.smi.protegex.owl.ui.forms.FormsNames
WidgetClassMapper - Interface in edu.stanford.smi.protegex.owl.ui.forms
  An interface for objects that can find a widget description URI for a widget Java class name.
widgets - Static variable in class edu.stanford.smi.protegex.owl.ui.forms.FormsNames
WidgetUtilities - Class in edu.stanford.smi.protegex.owl.ui.widget
  This class provides generic methods used by several OWL widgets to fullfill its tasks.
WidgetUtilities() - Constructor for class edu.stanford.smi.protegex.owl.ui.widget.WidgetUtilities
width - Static variable in class edu.stanford.smi.protegex.owl.ui.forms.AbsoluteLayoutNames
WINDOW_MENU - Static variable in class edu.stanford.smi.protegex.owl.ui.actions.AbstractOWLModelAction
withDefaultMappings(PrefixMapping) - Method in class edu.stanford.smi.protegex.owl.jena.graph.ProtegePrefixMapping
WIZARD_HELP_HEIGHT - Static variable in class edu.stanford.smi.protegex.owl.ui.widget.OWLUI
write(RDFResource, RDFProperty, Object) - Method in class edu.stanford.smi.protegex.owl.jena.triplestore.JenaMemoryTripleWriter
write(String) - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.dl.DLSyntaxBrowserTextGenerator
write(char) - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.dl.DLSyntaxBrowserTextGenerator
write(RDFResource, RDFProperty, Object) - Method in class edu.stanford.smi.protegex.owl.model.triplestore.DelegatingTripleWriter
write(RDFResource, RDFProperty, Object) - Method in class edu.stanford.smi.protegex.owl.model.triplestore.TripleStoreFilterTripleWriter
write(RDFResource, RDFProperty, Object) - Method in interface edu.stanford.smi.protegex.owl.model.triplestore.TripleWriter
  Writes a given Triples into this writer.
write() - Method in class edu.stanford.smi.protegex.owl.writer.rdfxml.rdfwriter.OWLModelAllTripleStoresWriter
write() - Method in class edu.stanford.smi.protegex.owl.writer.rdfxml.rdfwriter.OWLModelWriter
  Causes the RDF/XML representation of the model to be written.
write() - Method in class edu.stanford.smi.protegex.owl.writer.rdfxml.rdfwriter.RDFResourceCollectionWriter
write() - Method in class edu.stanford.smi.protegex.owl.writer.rdfxml.renderer.RDFAxiomRenderer
write() - Method in class edu.stanford.smi.protegex.owl.writer.rdfxml.renderer.RDFResourceRenderer
writeAttribute(String, String) - Method in class edu.stanford.smi.protegex.owl.writer.xml.DefaultXMLWriter
writeAttribute(String, String) - Method in interface edu.stanford.smi.protegex.owl.writer.xml.XMLWriter
  Writes an attribute of the last element to be started (that has not been closed).
writeAxioms(RDFResource, Writer) - Static method in class edu.stanford.smi.protegex.owl.writer.rdfxml.rdfwriter.RDFXMLWriter
writeAxioms(OWLModel, Collection, Writer) - Static method in class edu.stanford.smi.protegex.owl.writer.rdfxml.rdfwriter.RDFXMLWriter
writeCardinality(OWLCardinalityBase) - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.dl.DLSyntaxBrowserTextGenerator
writeClosePar() - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.dl.DLSyntaxBrowserTextGenerator
writeContent(XMLWriter) - Method in class edu.stanford.smi.protegex.owl.writer.rdfxml.rdfwriter.OWLModelContentWriter
writeContent(XMLWriter) - Method in class edu.stanford.smi.protegex.owl.writer.rdfxml.rdfwriter.RDFResourceCollectionContentWriter
writeContent(XMLWriter) - Method in interface edu.stanford.smi.protegex.owl.writer.rdfxml.rdfwriter.RDFXMLContentWriter
writeDocument() - Method in class edu.stanford.smi.protegex.owl.writer.rdfxml.rdfwriter.RDFXMLDocumentWriter
writeElementEnd() - Method in class edu.stanford.smi.protegex.owl.writer.xml.DefaultXMLWriter.XMLElement
writeElementStart(boolean) - Method in class edu.stanford.smi.protegex.owl.writer.xml.DefaultXMLWriter.XMLElement
writeEndElement() - Method in class edu.stanford.smi.protegex.owl.writer.xml.DefaultXMLWriter
writeEndElement() - Method in interface edu.stanford.smi.protegex.owl.writer.xml.XMLWriter
  Writes the closing tag of the last element to be started.
writeJenaOWLModel2File(JenaOWLModel, String) - Static method in class edu.stanford.smi.protegex.owl.swrl.util.P3OWLUtil
writeNAryLocical(OWLNAryLogicalClass) - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.dl.DLSyntaxBrowserTextGenerator
writeOntologyAndPrefixInfo(OWLModel, Collection) - Static method in class edu.stanford.smi.protegex.owl.model.factory.FactoryUtils
writeOpenPar() - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.dl.DLSyntaxBrowserTextGenerator
writeOWLOntologyToDatabase(OWLModel, TripleStore) - Static method in class edu.stanford.smi.protegex.owl.database.DatabaseFactoryUtils
writePrefix(String, String) - Method in class edu.stanford.smi.protegex.owl.jena.triplestore.JenaMemoryTripleWriter
writePrefix(String, String) - Method in class edu.stanford.smi.protegex.owl.model.triplestore.DelegatingTripleWriter
writePrefix(String, String) - Method in interface edu.stanford.smi.protegex.owl.model.triplestore.TripleWriter
  Writes a prefix declaration into this writer.
writePrefixes(TripleWriter, OWLModel) - Static method in class edu.stanford.smi.protegex.owl.model.triplestore.TripleWriterUtil
  Writes all prefixes of a given OWLModel into a given TripleWriter.
writeQuantifier(OWLQuantifierRestriction) - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.dl.DLSyntaxBrowserTextGenerator
WRITER_PROTEGE - Static variable in class edu.stanford.smi.protegex.owl.jena.JenaOWLModel
WRITER_SETTINGS_PROPERTY - Static variable in class edu.stanford.smi.protegex.owl.jena.JenaOWLModel
WriterSettings - Interface in edu.stanford.smi.protegex.owl.jena.writersettings
  An object representing settings for the RDF/XML writer of a JenaOWLModel.
WriterSettingsPanel - Class in edu.stanford.smi.protegex.owl.ui.menu.preferences
WriterSettingsPanel(OWLModel) - Constructor for class edu.stanford.smi.protegex.owl.ui.menu.preferences.WriterSettingsPanel
writeSpace() - Method in class edu.stanford.smi.protegex.owl.model.classdisplay.dl.DLSyntaxBrowserTextGenerator
writeStartElement(String) - Method in class edu.stanford.smi.protegex.owl.writer.xml.DefaultXMLWriter
writeStartElement(String, String) - Method in class edu.stanford.smi.protegex.owl.writer.xml.DefaultXMLWriter
writeStartElement(String) - Method in interface edu.stanford.smi.protegex.owl.writer.xml.XMLWriter
  Writes the start of an element
writeStartElement(String, String) - Method in interface edu.stanford.smi.protegex.owl.writer.xml.XMLWriter
  Writes the start of an element with namespace and a name
writeTextContent(String) - Method in class edu.stanford.smi.protegex.owl.writer.xml.DefaultXMLWriter
writeTextContent(String) - Method in interface edu.stanford.smi.protegex.owl.writer.xml.XMLWriter
  Writes a text element

## X

x - Static variable in class edu.stanford.smi.protegex.owl.ui.forms.AbsoluteLayoutNames
XML_LANG - Static variable in interface edu.stanford.smi.protegex.owl.writer.rdfxml.renderer.Vocab
XML_LITERAL - Static variable in class edu.stanford.smi.protegex.owl.model.impl.XMLSchemaDatatypes
XML_LITERAL - Static variable in interface edu.stanford.smi.protegex.owl.model.RDFNames
XML_TAG_HIDDEN_PROPERTY - Static variable in class edu.stanford.smi.protegex.owl.jena.Jena
XMLBaseExtractor - Class in edu.stanford.smi.protegex.owl.repository.util
  User: matthewhorridge
  The University Of Manchester
  Medical Informatics Group
  Date: Sep 21, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
XMLBaseExtractor(InputStream) - Constructor for class edu.stanford.smi.protegex.owl.repository.util.XMLBaseExtractor
XMLSchemaDatatypes - Class in edu.stanford.smi.protegex.owl.model.impl
  A utility class to manage the mapping of XML datatypes and the OWL classes.
XMLSchemaDatatypes() - Constructor for class edu.stanford.smi.protegex.owl.model.impl.XMLSchemaDatatypes
XMLWriter - Interface in edu.stanford.smi.protegex.owl.writer.xml
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Mar 22, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
XMLWriterFactory - Class in edu.stanford.smi.protegex.owl.writer.xml
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Apr 7, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
XMLWriterNamespaceManager - Class in edu.stanford.smi.protegex.owl.writer.xml
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Apr 8, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
XMLWriterNamespaceManager(String) - Constructor for class edu.stanford.smi.protegex.owl.writer.xml.XMLWriterNamespaceManager
XMLWriterPreferences - Class in edu.stanford.smi.protegex.owl.writer.xml
  User: matthewhorridge
  The Univeristy Of Manchester
  Medical Informatics Group
  Date: Apr 8, 2005

  matthew.horridge@cs.man.ac.uk
  www.cs.man.ac.uk/~horridgm
XSD_DATATYPE - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
XSD_MAX_EXCLUSIVE - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
XSD_MAX_INCLUSIVE - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
XSD_MIN_EXCLUSIVE - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
XSD_MIN_INCLUSIVE - Static variable in class edu.stanford.smi.protegex.owl.ui.icons.OWLIcons
XSD_NAMESPACE - Static variable in interface edu.stanford.smi.protegex.owl.model.XSDNames
XSD_PREFIX - Static variable in interface edu.stanford.smi.protegex.owl.model.RDFNames
XSDNames - Interface in edu.stanford.smi.protegex.owl.model
XSDNames.Facet - Interface in edu.stanford.smi.protegex.owl.model
XSDVisibility - Class in edu.stanford.smi.protegex.owl.model.util
  A class that manages the (in) visibility of RDFSDatatypes, depending on their usage.
XSDVisibility() - Constructor for class edu.stanford.smi.protegex.owl.model.util.XSDVisibility
XSP_BASE - Static variable in class edu.stanford.smi.protegex.owl.model.XSPNames
XSP_FRACTION_DIGITS - Static variable in class edu.stanford.smi.protegex.owl.model.XSPNames
XSP_LENGTH - Static variable in class edu.stanford.smi.protegex.owl.model.XSPNames
XSP_MAX_EXCLUSIVE - Static variable in class edu.stanford.smi.protegex.owl.model.XSPNames
XSP_MAX_INCLUSIVE - Static variable in class edu.stanford.smi.protegex.owl.model.XSPNames
XSP_MAX_LENGTH - Static variable in class edu.stanford.smi.protegex.owl.model.XSPNames
XSP_MIN_EXCLUSIVE - Static variable in class edu.stanford.smi.protegex.owl.model.XSPNames
XSP_MIN_INCLUSIVE - Static variable in class edu.stanford.smi.protegex.owl.model.XSPNames
XSP_MIN_LENGTH - Static variable in class edu.stanford.smi.protegex.owl.model.XSPNames
XSP_PATTERN - Static variable in class edu.stanford.smi.protegex.owl.model.XSPNames
XSP_TOTAL_DIGITS - Static variable in class edu.stanford.smi.protegex.owl.model.XSPNames
XSPNames - Class in edu.stanford.smi.protegex.owl.model
  Constants for the Protege XML Schema datatype extensions.
XSPNames() - Constructor for class edu.stanford.smi.protegex.owl.model.XSPNames

## Y

y - Static variable in class edu.stanford.smi.protegex.owl.ui.forms.AbsoluteLayoutNames
YEAR_MONTH_DURATION - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLConstants.BuiltIns
  Deprecated.
YEAR_MONTH_DURATION - Static variable in interface edu.stanford.smi.protegex.owl.swrl.model.SWRLNames.CoreBuiltIns

## _

_owlModel - Variable in class edu.stanford.smi.protegex.owl.ui.dialogs.SelectOWLClsesPanel
_tree - Variable in class edu.stanford.smi.protegex.owl.ui.dialogs.SelectOWLClsesPanel

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