Link to Protege software: Protege 3.1.1 installer for Windows
Link to projects for the course:
| Monday 3rd - Introduction, Biological Examples, and Getting Started | |
| 9:00:9:20 | Orientation and Participants Introduction |
| 9:20-9:40 | Course Introduction (Samson, Ray) |
| 9::40-10:30 | Biological Ontology Examples (SA instructors) |
| 10:30-10:45 | Break |
| 10:45-12:00 | Biological Ontology Examples Continued (SA instructors) |
| 12:00-1:00 | Lunch |
| 1:00-2:30 | Getting started: installation, Protege basics (Samson, Ray) |
| 2:30-2:45 | Break |
| 2:45-4:00 | Protege basics continued. Discussion of "Homework" problem (Samson, Ray) |
| 4:00-5:00 | Homework session |
| Tuesday 4th - Ontology Development, Extending and Managing Ontologies | |
| 9:00-10:30 | Ontology Development 101: Frame-based Ontologies (Ray) |
| 10:30-10:45 | Break |
| 10:45-12:00 | Ontology Development 101: Frame-based Ontologies - continued (Ray) |
| 12:00-1:00 | Lunch |
| 1:00-1:30 | Overview of Protégé Plugins (Ray) |
| 1:30-2:45 | Tasks in the Life Cycle of Ontology Development: Importing External Resources, Visualization (Samson) |
| 2:45-300 | Break |
| 3:00-4:00 | Using Prompt for Ontology Management (Ray) |
| 4:00-5:00 | Homework session |
| Wednesday 5th - More on Extending and Managing Ontologies, Developing Knowledge-based Applications | |
| 9:00-10:15 | Tasks in the Life Cycle of Ontology Development: Query, Multi-user, Exports (Samson) |
| 10:15-10:30 | Break |
| 10:30-12:00 | Tasks in the Life Cycle of Ontology Development: Integrity Constaints(Samson) |
| 12:00-1:00 | Lunch |
| 1:00-2:00 | Using Protégé in a Larger System (Ray) |
| 2:00-3:15 | Using High-Level Rule-Based and Scripting Languages (Samson) |
| 3:15-3:30 | Break |
| 3:30-4:00 | ATHENA Case Study (Samson) |
| 4:00-5:00 | Homework session |
| Thursday 6th - Advanced Topics and Participants' Projects | |
| 9:00-9:45 | Developing Frame-based Ontologies - Advanced (Ray) |
| 9:45-10:15 | Knowledge Representation & Reasoning - Different Formalisms (Samson) |
| 10:15-10:30 | Break |
| 10:30-11:30 | Introduction to Protégé OWL (Samson) |
| 11:30-12:00 | Exam |
| 12:00-1:00 | Lunch |
| 1:00-4:00 | Discussion: Participants' Projects |