Protege 4.1.0
A B C D E F G H I J K L M N O P R S T U V W X Z

A

AboutPanel - Class in org.protege.editor.core.ui.about
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 01-Sep-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

AboutPanel() - Constructor for class org.protege.editor.core.ui.about.AboutPanel
 
aboutToDisplayPanel() - Method in class org.protege.editor.core.ui.wizard.WizardPanel
Override this method to provide functionality that will be performed just before the panel is to be displayed.
aboutToDisplayPanel() - Method in class org.protege.editor.owl.ui.ontology.imports.wizard.page.LocalFilePage
 
aboutToDisplayPanel() - Method in class org.protege.editor.owl.ui.ontology.imports.wizard.page.OntologyImportPage
 
aboutToDisplayPanel() - Method in class org.protege.editor.owl.ui.ontology.imports.wizard.page.SelectImportLocationPage
 
aboutToDisplayPanel() - Method in class org.protege.editor.owl.ui.ontology.wizard.AbstractSelectOntologiesPage
 
aboutToDisplayPanel() - Method in class org.protege.editor.owl.ui.ontology.wizard.create.PhysicalLocationPanel
 
aboutToDisplayPanel() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.MoveAxiomsWizardKitConfigurationPanel
 
aboutToDisplayPanel() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.SelectActionPanel
 
aboutToDisplayPanel() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.SelectKitPanel
 
aboutToHidePanel() - Method in class org.protege.editor.core.ui.wizard.WizardPanel
Override this method to perform functionality just before the panel is to be hidden.
aboutToHidePanel() - Method in class org.protege.editor.owl.ui.ontology.imports.wizard.page.LibraryPage
 
aboutToHidePanel() - Method in class org.protege.editor.owl.ui.ontology.imports.wizard.page.LoadedOntologyPage
 
aboutToHidePanel() - Method in class org.protege.editor.owl.ui.ontology.imports.wizard.page.LocalFilePage
 
aboutToHidePanel() - Method in class org.protege.editor.owl.ui.ontology.imports.wizard.page.SelectImportLocationPage
 
aboutToHidePanel() - Method in class org.protege.editor.owl.ui.ontology.imports.wizard.page.URLPage
 
aboutToHidePanel() - Method in class org.protege.editor.owl.ui.ontology.wizard.create.PhysicalLocationPanel
 
aboutToHidePanel() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.CreateNewOntologyPanel
 
aboutToHidePanel() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.MoveAxiomsWizardKitConfigurationPanel
 
aboutToHidePanel() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.SelectActionPanel
 
aboutToHidePanel() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.SelectSourceOntologiesPanel
 
aboutToHidePanel() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.SelectTargetOntologyPanel
 
AbstractActiveOntologyViewComponent - Class in org.protege.editor.owl.ui.view
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 20-Mar-2007

AbstractActiveOntologyViewComponent() - Constructor for class org.protege.editor.owl.ui.view.AbstractActiveOntologyViewComponent
 
AbstractAnnotationsList<O extends AnnotationContainer> - Class in org.protege.editor.owl.ui.list
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Jun 8, 2009

Don't want to write this again - Matthew is adding an interface that Axiom and OWLOntology can implement that allows us to get the annotations.

AbstractAnnotationsList(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.list.AbstractAnnotationsList
 
AbstractAnnotationsList.AnnotationsListItem - Class in org.protege.editor.owl.ui.list
 
AbstractAnnotationsList.AnnotationsListItem(OWLAnnotation) - Constructor for class org.protege.editor.owl.ui.list.AbstractAnnotationsList.AnnotationsListItem
 
AbstractAppleApplicationWrapper - Class in org.protege.editor.core.platform.apple
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Sep 19, 2008

A wrapper for the apple Application class and its event handling.

AbstractAppleApplicationWrapper() - Constructor for class org.protege.editor.core.platform.apple.AbstractAppleApplicationWrapper
 
AbstractApplicationPluginLoader<E> - Class in org.protege.editor.core.plugin
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Mar 30, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

A helper class that loads application plugins - i.e.

AbstractApplicationPluginLoader(String) - Constructor for class org.protege.editor.core.plugin.AbstractApplicationPluginLoader
 
AbstractAxiomSelectionStrategy - Class in org.protege.editor.owl.model.selection.axioms
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: May 30, 2008

AbstractAxiomSelectionStrategy() - Constructor for class org.protege.editor.owl.model.selection.axioms.AbstractAxiomSelectionStrategy
 
AbstractByRendererMenu - Class in org.protege.editor.owl.ui.renderer.menu
 
AbstractByRendererMenu() - Constructor for class org.protege.editor.owl.ui.renderer.menu.AbstractByRendererMenu
 
AbstractDeleteEntityAction<E extends org.semanticweb.owlapi.model.OWLEntity> - Class in org.protege.editor.owl.ui.action
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 20-Apr-2007

AbstractDeleteEntityAction(String, Icon, OWLEditorKit, OWLObjectHierarchyProvider<E>, OWLEntitySetProvider<E>) - Constructor for class org.protege.editor.owl.ui.action.AbstractDeleteEntityAction
 
AbstractEditorKit<T extends EditorKitFactory> - Class in org.protege.editor.core.editorkit
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Oct 15, 2008

AbstractEditorKit(T) - Constructor for class org.protege.editor.core.editorkit.AbstractEditorKit
 
AbstractFontSizeAction - Class in org.protege.editor.core.ui.action
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 21-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

AbstractFontSizeAction() - Constructor for class org.protege.editor.core.ui.action.AbstractFontSizeAction
 
AbstractGraphModel - Class in uk.ac.man.cs.mig.util.graph.model.impl
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Feb 6, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

The AbstractGraphModel provides implementations of methods to add/remove listeners and fire GraphModelEvents.
AbstractGraphModel() - Constructor for class uk.ac.man.cs.mig.util.graph.model.impl.AbstractGraphModel
 
AbstractHierarchySelectorPanel<O extends org.semanticweb.owlapi.model.OWLEntity> - Class in org.protege.editor.owl.ui.selector
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Jun 5, 2008

AbstractHierarchySelectorPanel(OWLEditorKit, boolean, OWLObjectHierarchyProvider<O>) - Constructor for class org.protege.editor.owl.ui.selector.AbstractHierarchySelectorPanel
 
AbstractIDGenerator - Class in org.protege.editor.owl.model.entity
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Jul 28, 2008

AbstractIDGenerator() - Constructor for class org.protege.editor.owl.model.entity.AbstractIDGenerator
 
AbstractIntegerMetric - Class in org.protege.editor.owl.ui.metrics
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 20-Feb-2007

AbstractIntegerMetric(String) - Constructor for class org.protege.editor.owl.ui.metrics.AbstractIntegerMetric
 
AbstractModelManager - Class in org.protege.editor.core
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Mar 17, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

An abstract class that implements enough functionality from ModelManager to support adding, removing of ModelManagerListeners and firing of ModelManager events.

AbstractModelManager() - Constructor for class org.protege.editor.core.AbstractModelManager
 
AbstractMoveAxiomsWizardPanel - Class in org.protege.editor.owl.ui.ontology.wizard.move
Author: Matthew Horridge
The University Of Manchester
Information Management Group
Date: 11-Sep-2008

AbstractMoveAxiomsWizardPanel(Object, String, OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.ontology.wizard.move.AbstractMoveAxiomsWizardPanel
 
AbstractNamespaceManager - Class in org.protege.editor.owl.model.namespace
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 19-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

AbstractNamespaceManager() - Constructor for class org.protege.editor.owl.model.namespace.AbstractNamespaceManager
 
AbstractOntologyRenderingViewComponent - Class in org.protege.editor.owl.ui.view.ontology
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 20-Mar-2007

AbstractOntologyRenderingViewComponent() - Constructor for class org.protege.editor.owl.ui.view.ontology.AbstractOntologyRenderingViewComponent
 
AbstractOntologySelectionStrategyAction - Class in org.protege.editor.owl.ui.action
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Jun 6, 2008

AbstractOntologySelectionStrategyAction() - Constructor for class org.protege.editor.owl.ui.action.AbstractOntologySelectionStrategyAction
 
AbstractOWLAnnotationPropertyViewComponent - Class in org.protege.editor.owl.ui.view.annotationproperty
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Apr 15, 2009

AbstractOWLAnnotationPropertyViewComponent() - Constructor for class org.protege.editor.owl.ui.view.annotationproperty.AbstractOWLAnnotationPropertyViewComponent
 
AbstractOWLClassAxiomFrameSection<A extends org.semanticweb.owlapi.model.OWLAxiom,E> - Class in org.protege.editor.owl.ui.frame.cls
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Nov 28, 2008

AbstractOWLClassAxiomFrameSection(OWLEditorKit, String, String, OWLFrame<? extends OWLClassExpression>) - Constructor for class org.protege.editor.owl.ui.frame.cls.AbstractOWLClassAxiomFrameSection
 
AbstractOWLClassAxiomFrameSection(OWLEditorKit, String, OWLFrame<? extends OWLClassExpression>) - Constructor for class org.protege.editor.owl.ui.frame.cls.AbstractOWLClassAxiomFrameSection
 
AbstractOWLClassExpressionEditor - Class in org.protege.editor.owl.ui.editor
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Feb 26, 2009

AbstractOWLClassExpressionEditor() - Constructor for class org.protege.editor.owl.ui.editor.AbstractOWLClassExpressionEditor
 
AbstractOWLClassGraphModel - Class in uk.ac.man.cs.mig.coode.owlviz.model
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 08-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

AbstractOWLClassGraphModel(OWLModelManager, OWLObjectHierarchyProvider) - Constructor for class uk.ac.man.cs.mig.coode.owlviz.model.AbstractOWLClassGraphModel
 
AbstractOWLClassHierarchyViewComponent - Class in org.protege.editor.owl.ui.view.cls
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 19-May-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

AbstractOWLClassHierarchyViewComponent() - Constructor for class org.protege.editor.owl.ui.view.cls.AbstractOWLClassHierarchyViewComponent
 
AbstractOWLClassViewComponent - Class in org.protege.editor.owl.ui.view.cls
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Mar 21, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

An OWLView that displays information about classes

AbstractOWLClassViewComponent() - Constructor for class org.protege.editor.owl.ui.view.cls.AbstractOWLClassViewComponent
 
AbstractOWLDataPropertyViewComponent - Class in org.protege.editor.owl.ui.view.dataproperty
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 05-Jul-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

AbstractOWLDataPropertyViewComponent() - Constructor for class org.protege.editor.owl.ui.view.dataproperty.AbstractOWLDataPropertyViewComponent
 
AbstractOWLDataTypeViewComponent - Class in org.protege.editor.owl.ui.view.datatype
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Jun 5, 2009

AbstractOWLDataTypeViewComponent() - Constructor for class org.protege.editor.owl.ui.view.datatype.AbstractOWLDataTypeViewComponent
 
AbstractOWLEntityHierarchyViewComponent<E extends org.semanticweb.owlapi.model.OWLEntity> - Class in org.protege.editor.owl.ui.view
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Apr 23, 2009

AbstractOWLEntityHierarchyViewComponent() - Constructor for class org.protege.editor.owl.ui.view.AbstractOWLEntityHierarchyViewComponent
 
AbstractOWLEntityRenderer - Class in org.protege.editor.owl.ui.renderer
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 30-Aug-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

AbstractOWLEntityRenderer() - Constructor for class org.protege.editor.owl.ui.renderer.AbstractOWLEntityRenderer
 
AbstractOWLFrame<R> - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 19-Jan-2007

AbstractOWLFrame(OWLOntologyManager) - Constructor for class org.protege.editor.owl.ui.frame.AbstractOWLFrame
 
AbstractOWLFrameSection<R,A extends org.semanticweb.owlapi.model.OWLAxiom,E> - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 19-Jan-2007

The visitor methods can be overriden to be notified when an axiom is added or removed
AbstractOWLFrameSection(OWLEditorKit, String, String, OWLFrame<? extends R>) - Constructor for class org.protege.editor.owl.ui.frame.AbstractOWLFrameSection
 
AbstractOWLFrameSection(OWLEditorKit, String, OWLFrame<? extends R>) - Constructor for class org.protege.editor.owl.ui.frame.AbstractOWLFrameSection
 
AbstractOWLFrameSectionRow<R,A extends org.semanticweb.owlapi.model.OWLAxiom,E> - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 19-Jan-2007

AbstractOWLFrameSectionRow(OWLEditorKit, OWLFrameSection<R, A, E>, OWLOntology, R, A) - Constructor for class org.protege.editor.owl.ui.frame.AbstractOWLFrameSectionRow
 
AbstractOWLIndividualViewComponent - Class in org.protege.editor.owl.ui.view.individual
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 07-May-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

AbstractOWLIndividualViewComponent() - Constructor for class org.protege.editor.owl.ui.view.individual.AbstractOWLIndividualViewComponent
 
AbstractOWLObjectEditor<E> - Class in org.protege.editor.owl.ui.editor
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 15-Feb-2007

AbstractOWLObjectEditor() - Constructor for class org.protege.editor.owl.ui.editor.AbstractOWLObjectEditor
 
AbstractOWLObjectHierarchyCreator - Class in org.protege.editor.owl.model.hierarchy.tabbed
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 16-Jul-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

AbstractOWLObjectHierarchyCreator(OWLDataFactory, OWLOntology, List<Edge>) - Constructor for class org.protege.editor.owl.model.hierarchy.tabbed.AbstractOWLObjectHierarchyCreator
 
AbstractOWLObjectHierarchyProvider<N extends org.semanticweb.owlapi.model.OWLObject> - Class in org.protege.editor.owl.model.hierarchy
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 01-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

A basic partial implementation of a hierarchy provider, which handles listeners and event firing, and also provides basic implementations of method such as getAncestors, getDescendants etc.

AbstractOWLObjectHierarchyProvider(OWLOntologyManager) - Constructor for class org.protege.editor.owl.model.hierarchy.AbstractOWLObjectHierarchyProvider
 
AbstractOWLObjectPropertyViewComponent - Class in org.protege.editor.owl.ui.view.objectproperty
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Apr 25, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

AbstractOWLObjectPropertyViewComponent() - Constructor for class org.protege.editor.owl.ui.view.objectproperty.AbstractOWLObjectPropertyViewComponent
 
AbstractOWLOntologyObjectHierarchyProvider<N extends org.semanticweb.owlapi.model.OWLObject> - Class in org.protege.editor.owl.model.hierarchy
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 01-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

AbstractOWLOntologyObjectHierarchyProvider(OWLOntologyManager) - Constructor for class org.protege.editor.owl.model.hierarchy.AbstractOWLOntologyObjectHierarchyProvider
 
AbstractOWLPropertyHierarchyProvider<R extends org.semanticweb.owlapi.model.OWLPropertyRange,E extends org.semanticweb.owlapi.model.OWLPropertyExpression<R,E>,P extends E> - Class in org.protege.editor.owl.model.hierarchy
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 23-Jan-2007

AbstractOWLPropertyHierarchyProvider(OWLOntologyManager) - Constructor for class org.protege.editor.owl.model.hierarchy.AbstractOWLPropertyHierarchyProvider
 
AbstractOWLPropertyHierarchyViewComponent<O extends org.semanticweb.owlapi.model.OWLProperty> - Class in org.protege.editor.owl.ui.view
User: nickdrummond Date: May 23, 2008
AbstractOWLPropertyHierarchyViewComponent() - Constructor for class org.protege.editor.owl.ui.view.AbstractOWLPropertyHierarchyViewComponent
 
AbstractOWLPropertyViewComponent<O extends org.semanticweb.owlapi.model.OWLProperty> - Class in org.protege.editor.owl.ui.view
User: nickdrummond Date: May 23, 2008
AbstractOWLPropertyViewComponent() - Constructor for class org.protege.editor.owl.ui.view.AbstractOWLPropertyViewComponent
 
AbstractOWLSelectionViewComponent - Class in org.protege.editor.owl.ui.view
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Apr 8, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

A view that has a notion of a selected OWLObject

AbstractOWLSelectionViewComponent() - Constructor for class org.protege.editor.owl.ui.view.AbstractOWLSelectionViewComponent
 
AbstractOWLTreeAction<E extends org.semanticweb.owlapi.model.OWLEntity> - Class in org.protege.editor.owl.ui.action
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: May 27, 2009

AbstractOWLTreeAction(String, Icon, TreeSelectionModel) - Constructor for class org.protege.editor.owl.ui.action.AbstractOWLTreeAction
 
AbstractOWLViewComponent - Class in org.protege.editor.owl.ui.view
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Mar 18, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

AbstractOWLViewComponent() - Constructor for class org.protege.editor.owl.ui.view.AbstractOWLViewComponent
 
AbstractOWLWizardPanel - Class in org.protege.editor.owl.ui
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 12-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

AbstractOWLWizardPanel(Object, String, OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.AbstractOWLWizardPanel
 
AbstractPluginLoader<E> - Class in org.protege.editor.core.plugin
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Mar 22, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

A helper class, that takes the chore out of instantiating types of plugins.

AbstractPluginLoader(String, String) - Constructor for class org.protege.editor.core.plugin.AbstractPluginLoader
Creates a loader that will load (a subset) of the plugins that extend the specified plugin at the specified plugin extension point.
AbstractPreferenceNode<V> - Class in org.protege.editor.core.ui.preferences.node
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 08-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

AbstractPreferenceNode(String) - Constructor for class org.protege.editor.core.ui.preferences.node.AbstractPreferenceNode
 
AbstractPropertyDomainFrameSection<P extends org.semanticweb.owlapi.model.OWLProperty,A extends org.semanticweb.owlapi.model.OWLPropertyDomainAxiom> - Class in org.protege.editor.owl.ui.frame.property
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Oct 16, 2008

AbstractPropertyDomainFrameSection(OWLEditorKit, OWLFrame<P>) - Constructor for class org.protege.editor.owl.ui.frame.property.AbstractPropertyDomainFrameSection
 
AbstractPropertyDomainFrameSectionRow<P extends org.semanticweb.owlapi.model.OWLProperty,A extends org.semanticweb.owlapi.model.OWLPropertyDomainAxiom> - Class in org.protege.editor.owl.ui.frame.property
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Oct 16, 2008

AbstractPropertyDomainFrameSectionRow(OWLEditorKit, OWLFrameSection<P, A, OWLClassExpression>, OWLOntology, P, A) - Constructor for class org.protege.editor.owl.ui.frame.property.AbstractPropertyDomainFrameSectionRow
 
AbstractProtegeOWLReasonerInfo - Class in org.protege.editor.owl.model.inference
 
AbstractProtegeOWLReasonerInfo() - Constructor for class org.protege.editor.owl.model.inference.AbstractProtegeOWLReasonerInfo
 
AbstractProtegePlugin<P extends ProtegePluginInstance> - Class in org.protege.editor.core.plugin
 
AbstractProtegePlugin(IExtension) - Constructor for class org.protege.editor.core.plugin.AbstractProtegePlugin
 
AbstractQueryNode - Class in org.protege.editor.owl.model.classexpression
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 06-Oct-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

AbstractQueryNode(OWLClassExpressionNode, OWLClassExpressionNode) - Constructor for class org.protege.editor.owl.model.classexpression.AbstractQueryNode
 
AbstractRasterFormat - Class in uk.ac.man.cs.mig.util.graph.export.impl
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Feb 20, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

AbstractRasterFormat(String) - Constructor for class uk.ac.man.cs.mig.util.graph.export.impl.AbstractRasterFormat
 
AbstractRestrictionCreatorPanel<P extends org.semanticweb.owlapi.model.OWLProperty,F extends org.semanticweb.owlapi.model.OWLObject> - Class in org.protege.editor.owl.ui.editor
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Sep 11, 2008

AbstractRestrictionCreatorPanel() - Constructor for class org.protege.editor.owl.ui.editor.AbstractRestrictionCreatorPanel
 
AbstractRestrictionCreatorPanel.CardinalityRestrictionCreator<P extends org.semanticweb.owlapi.model.OWLProperty,F extends org.semanticweb.owlapi.model.OWLObject> - Class in org.protege.editor.owl.ui.editor
 
AbstractRestrictionCreatorPanel.CardinalityRestrictionCreator(String) - Constructor for class org.protege.editor.owl.ui.editor.AbstractRestrictionCreatorPanel.CardinalityRestrictionCreator
 
AbstractRestrictionCreatorPanel.RestrictionCreator<P extends org.semanticweb.owlapi.model.OWLProperty,F extends org.semanticweb.owlapi.model.OWLObject> - Class in org.protege.editor.owl.ui.editor
 
AbstractRestrictionCreatorPanel.RestrictionCreator(String) - Constructor for class org.protege.editor.owl.ui.editor.AbstractRestrictionCreatorPanel.RestrictionCreator
 
AbstractSelectionProvider - Class in org.protege.editor.core.ui.util
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Mar 21, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

AbstractSelectionProvider() - Constructor for class org.protege.editor.core.ui.util.AbstractSelectionProvider
 
AbstractSelectOntologiesPage - Class in org.protege.editor.owl.ui.ontology.wizard
Author: Matthew Horridge
The University Of Manchester
Information Management Group
Date: 23-Sep-2008

AbstractSelectOntologiesPage(Object, OWLEditorKit, String) - Constructor for class org.protege.editor.owl.ui.ontology.wizard.AbstractSelectOntologiesPage
 
AbstractSelectorPanel<O extends org.semanticweb.owlapi.model.OWLObject> - Class in org.protege.editor.owl.ui.selector
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 03-Jul-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

A common base class for selector panels, so that they all have the same preferred size etc.

AbstractSelectorPanel(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.selector.AbstractSelectorPanel
 
AbstractSelectorPanel(OWLEditorKit, boolean) - Constructor for class org.protege.editor.owl.ui.selector.AbstractSelectorPanel
 
AbstractSelectorPanel(OWLEditorKit, boolean, boolean) - Constructor for class org.protege.editor.owl.ui.selector.AbstractSelectorPanel
 
AbstractSuperClassHierarchyProvider - Class in org.protege.editor.owl.model.hierarchy
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 14-Sep-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

A "reverse hierarchy" of superclass relationships.

AbstractSuperClassHierarchyProvider(OWLOntologyManager) - Constructor for class org.protege.editor.owl.model.hierarchy.AbstractSuperClassHierarchyProvider
 
AbstractSuperClassHierarchyViewComponent - Class in org.protege.editor.owl.ui.view.cls
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 14-Sep-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

AbstractSuperClassHierarchyViewComponent() - Constructor for class org.protege.editor.owl.ui.view.cls.AbstractSuperClassHierarchyViewComponent
 
AbstractVectorFormat - Class in uk.ac.man.cs.mig.util.graph.export.impl
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Feb 27, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

AbstractVectorFormat() - Constructor for class uk.ac.man.cs.mig.util.graph.export.impl.AbstractVectorFormat
 
AbstractWizardPanel - Class in org.protege.editor.core.ui.wizard
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 12-May-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

AbstractWizardPanel(Object, String, EditorKit) - Constructor for class org.protege.editor.core.ui.wizard.AbstractWizardPanel
 
accept(OWLClassExpressionNodeVisitor) - Method in class org.protege.editor.owl.model.classexpression.OWLClassExpressionLeafNode
 
accept(OWLClassExpressionNodeVisitor) - Method in interface org.protege.editor.owl.model.classexpression.OWLClassExpressionNode
 
accept(OWLClassExpressionNodeVisitor) - Method in class org.protege.editor.owl.model.classexpression.OWLClassExpressionNodeDifference
 
accept(OWLClassExpressionNodeVisitor) - Method in class org.protege.editor.owl.model.classexpression.OWLClassExpressionNodePossibly
 
accept(OWLClassExpressionNodeVisitor) - Method in class org.protege.editor.owl.model.classexpression.OWLClassExpressionNodeUnion
 
accept(File) - Method in class org.protege.editor.owl.model.OntologyFileFilter
 
accept(File) - Method in class org.protege.ontograf.ui.OntoGrafFileFilter
Return true if this file should be shown in the directory pane, false if it shouldn't.
actionPerformed(ActionEvent) - Method in class org.protege.editor.core.ui.action.AbstractFontSizeAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.core.ui.action.CheckPluginsAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.core.ui.action.CloseAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.core.ui.action.NewAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.core.ui.action.OpenAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.core.ui.action.OpenRecentAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.core.ui.action.SaveAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.core.ui.action.SaveAsAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.core.ui.action.start.CheckPluginsAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.core.ui.action.start.ResetPreferencesAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.core.ui.action.TimestampOutputAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.core.ui.menu.NullMenuAction
Invoked when an action occurs.
actionPerformed(ActionEvent) - Method in class org.protege.editor.core.ui.menu.OpenURLMenuAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.core.ui.preferences.ShowPreferencesAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.core.ui.view.ViewActionAdapter
Invoked when an action occurs.
actionPerformed(ActionEvent) - Method in class org.protege.editor.core.ui.wizard.WizardController
Calling method for the action listener interface.
actionPerformed(ActionEvent) - Method in class org.protege.editor.core.ui.workspace.tabs.CreateTabAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.core.ui.workspace.tabs.DeleteCustomTabsAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.core.ui.workspace.tabs.ExportTabAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.core.ui.workspace.tabs.ImportTabAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.core.ui.workspace.tabs.ResetCurrentTabAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.core.ui.workspace.tabs.SaveAllTabsAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.core.ui.workspace.tabs.TabsMenuAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.core.ui.workspace.views.ViewMenuAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.action.AbstractDeleteEntityAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.action.AbstractOntologySelectionStrategyAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.action.AddCoveringAxiomAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.action.AmalgamateDisjointClassesAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.action.AmalgamateSuperClassesAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.action.ChangeOntologyIRI
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.action.CloseOntologiesAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.action.CoerceDataPropertyValuesIntoPropertyRangeAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.action.ConvertAssertionsOnPunsToAnnotations
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.action.ConvertEntityURIsToLabels
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.action.ConvertMinOneToSomeValuesFromAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.action.ConvertToDefinedClassAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.action.ConvertToPrimitiveClassAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.action.CopyAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.action.CreateClassHierarchyAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.action.CreateEmptyOntologyAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.action.CreateInstanceOfSelectedClassAction
Invoked when an action occurs.
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.action.CreateInstanceOfThingAction
Invoked when an action occurs.
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.action.CreateNewChildAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.action.CreateNewObjectAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.action.CreateNewSiblingAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.action.CutAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.action.DeleteAction
 
actionPerformed(OWLEntity) - Method in class org.protege.editor.owl.ui.action.DeleteEntityAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.action.DeleteIndividualAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.action.DuplicateSelectedClassAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.action.export.inferred.ExportInferredOntologyAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.action.FindAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.action.GatherOntologiesAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.action.LoadIntoCurrentModelAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.action.MakeAllIndividualsDifferent
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.action.MakePrimitiveSiblingsDisjoint
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.action.MergeOntologiesAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.action.MoveAxiomsToOntologyAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.action.OpenFromURLAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.action.PasteAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.action.RedoAction
Invoked when an action occurs.
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.action.RemoveAllDisjointAxiomsAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.action.RemoveLocalDisjointAxiomsAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.action.RenameEntitiesBySearchAndReplaceAction
 
actionPerformed(OWLEntity) - Method in class org.protege.editor.owl.ui.action.RenameEntityAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.action.SelectedOWLEntityAction
 
actionPerformed(OWLEntity) - Method in class org.protege.editor.owl.ui.action.SelectedOWLEntityAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.action.ShowFileAction
 
actionPerformed(OWLEntity) - Method in class org.protege.editor.owl.ui.action.ShowUsageAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.action.SplitDisjointClassesAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.action.SplitSubClassAxiomsAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.action.UndoAction
Invoked when an action occurs.
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.action.VisibilityManagerOntologySelectionStrategyAction
 
actionPerformed() - Method in interface org.protege.editor.owl.ui.frame.OWLFrameAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.framelist.CreateClosureAxiomAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.framelist.CreateNewEquivalentClassAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.framelist.MoveAxiomsToOntologyAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.framelist.PullIntoActiveOntologyAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.framelist.SwitchToDefiningOntologyAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.inference.ConfigureReasonerAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.inference.ExplainInconsistentOntologyAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.inference.PrecomputeAction
Invoked when an action occurs.
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.library.DeleteRedirectAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.library.EditActiveOntologyLibraryAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.library.EditOntologyLibraryAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.library.EditUriAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.ontology.location.ShowOntologyLocationsAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.preferences.NewEntitiesPreferencesPanel
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.prefix.AddPrefixMappingAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.prefix.GeneratePrefixFromOntologyAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.prefix.RemovePrefixMappingAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.renderer.menu.AbstractByRendererMenu
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.renderer.menu.ConfigureRenderer
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.renderer.menu.RenderByProperty
 
actionPerformed(ActionEvent) - Method in class uk.ac.man.cs.mig.coode.owlviz.command.AddExistentialGraphCommand
 
actionPerformed(ActionEvent) - Method in class uk.ac.man.cs.mig.coode.owlviz.command.ExportCommand
Invoked when an action occurs.
actionPerformed(ActionEvent) - Method in class uk.ac.man.cs.mig.coode.owlviz.command.HideAllClassesCommand
Invoked when an action occurs.
actionPerformed(ActionEvent) - Method in class uk.ac.man.cs.mig.coode.owlviz.command.HideClassCommand
Invoked when an action occurs.
actionPerformed(ActionEvent) - Method in class uk.ac.man.cs.mig.coode.owlviz.command.HideClassesPastRadiusCommand
Invoked when an action occurs.
actionPerformed(ActionEvent) - Method in class uk.ac.man.cs.mig.coode.owlviz.command.HideSubclassesCommand
Invoked when an action occurs.
actionPerformed(ActionEvent) - Method in class uk.ac.man.cs.mig.coode.owlviz.command.RefreshDisplayCommand
 
actionPerformed(ActionEvent) - Method in class uk.ac.man.cs.mig.coode.owlviz.command.SetOptionsCommand
Invoked when an action occurs.
actionPerformed(ActionEvent) - Method in class uk.ac.man.cs.mig.coode.owlviz.command.ShowAllClassesCommand
Invoked when an action occurs.
actionPerformed(ActionEvent) - Method in class uk.ac.man.cs.mig.coode.owlviz.command.ShowAnonymousClassesCommand
 
actionPerformed(ActionEvent) - Method in class uk.ac.man.cs.mig.coode.owlviz.command.ShowClassCommand
Invoked when an action occurs.
actionPerformed(ActionEvent) - Method in class uk.ac.man.cs.mig.coode.owlviz.command.ShowProjectInfo
Invoked when an action occurs.
actionPerformed(ActionEvent) - Method in class uk.ac.man.cs.mig.coode.owlviz.command.ShowSubclassesCommand
Invoked when an action occurs.
actionPerformed(ActionEvent) - Method in class uk.ac.man.cs.mig.coode.owlviz.command.ShowSuperclassesCommand
Invoked when an action occurs.
actionPerformed(ActionEvent) - Method in class uk.ac.man.cs.mig.coode.owlviz.command.ZoomInCommand
Invoked when an action occurs.
actionPerformed(ActionEvent) - Method in class uk.ac.man.cs.mig.coode.owlviz.command.ZoomOutCommand
Invoked when an action occurs.
ActionTarget - Interface in org.protege.editor.owl.ui.action
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 02-May-2007

Activator - Class in org.protege.common
 
Activator() - Constructor for class org.protege.common.Activator
 
ActiveOntologyComparator - Class in org.protege.editor.owl.ui.renderer.prefix
 
ActiveOntologyComparator() - Constructor for class org.protege.editor.owl.ui.renderer.prefix.ActiveOntologyComparator
 
activeOntologyContainsAxioms(OWLEntity) - Method in class org.protege.editor.owl.ui.renderer.OWLCellRenderer
 
ActiveOntologySelectionStrategy - Class in org.protege.editor.owl.model.selection.ontologies
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Jun 6, 2008

ActiveOntologySelectionStrategy(OWLModelManager) - Constructor for class org.protege.editor.owl.model.selection.ontologies.ActiveOntologySelectionStrategy
 
ActiveOntologyStrategyAction - Class in org.protege.editor.owl.ui.action
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Jun 6, 2008

ActiveOntologyStrategyAction() - Constructor for class org.protege.editor.owl.ui.action.ActiveOntologyStrategyAction
 
ActiveOntologyView - Class in org.protege.editor.owl.ui.ontology
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 13-May-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

ActiveOntologyView() - Constructor for class org.protege.editor.owl.ui.ontology.ActiveOntologyView
 
ADCFactory - Class in org.protege.editor.owl.model.classexpression.anonymouscls
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Jan 8, 2009

ADCFactory(AnonymousDefinedClassManager) - Constructor for class org.protege.editor.owl.model.classexpression.anonymouscls.ADCFactory
 
ADCRewriter - Class in org.protege.editor.owl.model.classexpression.anonymouscls
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Jan 7, 2009

ADCRewriter(AnonymousDefinedClassManager, OWLDataFactory) - Constructor for class org.protege.editor.owl.model.classexpression.anonymouscls.ADCRewriter
 
add(URI) - Method in class org.protege.editor.core.BookMarkedURIManager
 
add(EditorKitDescriptor) - Method in class org.protege.editor.core.editorkit.RecentEditorKitManager
 
add(Component, Object) - Method in class org.protege.editor.core.ui.preferences.PreferencesPanel
 
add(OWLClassExpression, String) - Method in class org.protege.editor.owl.model.cache.OWLExpressionUserCache
 
add(N, N) - Method in interface org.protege.editor.owl.ui.tree.OWLTreeDragAndDropHandler
 
add(N, N) - Method in class org.protege.editor.owl.ui.view.OWLPropertyTreeDropHandler
 
add(Node) - Method in interface uk.ac.man.cs.mig.util.graph.graph.Graph
Adds a Node to the graph.
add(Edge) - Method in interface uk.ac.man.cs.mig.util.graph.graph.Graph
Adds an Edge to the graph.
add(Node) - Method in class uk.ac.man.cs.mig.util.graph.graph.impl.DefaultGraph
Adds a Node to the graph.
add(Edge) - Method in class uk.ac.man.cs.mig.util.graph.graph.impl.DefaultGraph
Adds an Edge to the graph.
add(Object) - Method in class uk.ac.man.cs.mig.util.graph.model.impl.DefaultGraphModel
Adds an object to the model.
add(Object, Object) - Method in class uk.ac.man.cs.mig.util.graph.model.impl.DefaultGraphModel
Adds parent-child relationship/edge to the model.
add_escapes(String) - Method in exception uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.ParseException
Used to convert raw characters to their escaped version when these raw version cannot be used as part of an ASCII string literal.
addAction(ProtegeAction, String, String) - Method in class org.protege.editor.core.ui.view.View
 
addAction(Action) - Method in class org.protege.editor.core.ui.view.ViewBanner
Adds an action to the view header.
addAction(Action) - Method in class org.protege.editor.core.ui.view.ViewBar
 
addAction(Action) - Method in class org.protege.editor.core.ui.view.ViewBarComponent
 
addAction(ProtegeAction, String, String) - Method in class org.protege.editor.core.ui.view.ViewComponent
 
addAction(DisposableAction, String, String) - Method in class org.protege.editor.core.ui.view.ViewComponent
 
addAction(OWLSelectionViewAction, String, String) - Method in class org.protege.editor.owl.ui.view.AbstractOWLSelectionViewComponent
 
addAndClearAxioms(Set<OWLAxiom>) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.OWLVizAxiomGraphModel
This method clears all the map (invokes the clearMaps-method) at first.
addArc(OWLEntity, OWLEntity, String, Icon) - Method in class org.protege.ontograf.common.ProtegeGraphModel
Adds a GraphArc to the model if it doesn't already exist.
addAxiom(A, OWLOntology) - Method in class org.protege.editor.owl.ui.frame.cls.AbstractOWLClassAxiomFrameSection
 
addAxiom(OWLClassAssertionAxiom, OWLOntology) - Method in class org.protege.editor.owl.ui.frame.cls.OWLClassAssertionAxiomMembersSection
 
addAxiom(OWLDisjointClassesAxiom, OWLOntology) - Method in class org.protege.editor.owl.ui.frame.cls.OWLDisjointClassesAxiomFrameSection
 
addAxiom(OWLEquivalentClassesAxiom, OWLOntology) - Method in class org.protege.editor.owl.ui.frame.cls.OWLEquivalentClassesAxiomFrameSection
 
addAxiom(OWLSubClassOfAxiom, OWLOntology) - Method in class org.protege.editor.owl.ui.frame.cls.OWLSubClassAxiomFrameSection
 
addAxioms(OWLClass, OWLReasoner, OWLDataFactory, Set<OWLDisjointClassesAxiom>) - Method in class org.protege.editor.owl.ui.action.export.inferred.InferredDisjointClassesAxiomGenerator
 
addBoxedName(String) - Method in class org.protege.editor.owl.ui.renderer.OWLCellRenderer
 
addBusyListener(BackgroundTaskListener) - Method in class org.protege.editor.core.ui.progress.BackgroundTaskManager
 
addChangeListener(ChangeListener) - Method in class org.protege.editor.core.ui.util.FilePathPanel
 
addChangeListener(ChangeListener) - Method in class org.protege.editor.core.ui.util.FileURIPanel
 
addChangeListener(ChangeListener) - Method in class org.protege.editor.core.ui.util.URLPanel
 
addChangeListener(ChangeListener) - Method in interface org.protege.editor.owl.model.selection.OWLSelectionHistoryManager
 
addChangeListener(ChangeListener) - Method in class org.protege.editor.owl.model.selection.OWLSelectionHistoryManagerImpl
 
addChangeListener(ChangeListener) - Method in interface org.protege.editor.owl.ui.action.ActionTarget
 
addChangeListener(ChangeListener) - Method in class org.protege.editor.owl.ui.framelist.OWLFrameList
 
addChangeListener(ChangeListener) - Method in class org.protege.editor.owl.ui.OWLIndividualListComponent
 
addChangeListener(ChangeListener) - Method in class org.protege.editor.owl.ui.view.AbstractOWLEntityHierarchyViewComponent
 
addChangeListener(ChangeListener) - Method in class org.protege.editor.owl.ui.view.AnonymousClassesView
 
addChangeListener(ChangeListener) - Method in class org.protege.editor.owl.ui.view.ChangeListenerMediator
Adds a change listener that will be notified of state change events.
addChangeListener(ChangeListener) - Method in interface org.protege.editor.owl.ui.view.Copyable
Adds a change listener.
addChangeListener(ChangeListener) - Method in interface org.protege.editor.owl.ui.view.Cuttable
 
addChangeListener(ChangeListener) - Method in class org.protege.editor.owl.ui.view.individual.OWLIndividualListViewComponent
 
addChangeListener(ChangeListener) - Method in class org.protege.editor.owl.ui.view.individual.OWLIndividualsByTypeViewComponent
 
addChangeListener(ChangeListener) - Method in interface org.protege.editor.owl.ui.view.Pasteable
 
addCheckListListener(CheckList.CheckListListener) - Method in class org.protege.editor.core.ui.util.CheckList
 
addCheckSelectionListener(ListSelectionListener) - Method in class org.protege.editor.core.ui.util.CheckTable
 
addChild(DefaultGraphNode) - Method in class uk.ac.man.cs.mig.util.graph.model.impl.DefaultGraphNode
 
addChildEdges(Object) - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultGraphGenerator
Creates the Edges that link the Node which represents the specified object to the Nodes that represent the children of the specified object.
AddCoveringAxiomAction - Class in org.protege.editor.owl.ui.action
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 03-Jul-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

AddCoveringAxiomAction() - Constructor for class org.protege.editor.owl.ui.action.AddCoveringAxiomAction
 
addCustomEntriesToTable(UIDefaults) - Method in class org.protege.editor.core.ui.util.ProtegePlasticTheme
 
added - Variable in class org.protege.editor.owl.ui.frame.cls.OWLDisjointClassesAxiomFrameSection
 
addEditorKit(EditorKit) - Method in class org.protege.editor.core.editorkit.EditorKitManager
Adds a new EditorKit to the list of open EditorKits.
addedToNode(ComponentNode) - Method in class org.protege.editor.core.ui.view.View
 
AddEntryDialog - Class in org.protege.editor.owl.ui.library
 
AddEntryDialog(JDialog, List<CatalogEntryManager>, XMLCatalog) - Constructor for class org.protege.editor.owl.ui.library.AddEntryDialog
 
addEquivalentObject(N) - Method in class org.protege.editor.owl.ui.tree.OWLObjectTreeNode
 
addEscapes(String) - Static method in error uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.TokenMgrError
Replaces unprintable characters by their espaced (or unicode escaped) equivalents in the given string
AddExistentialGraphCommand - Class in uk.ac.man.cs.mig.coode.owlviz.command
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Jul 7, 2005

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

AddExistentialGraphCommand() - Constructor for class uk.ac.man.cs.mig.coode.owlviz.command.AddExistentialGraphCommand
 
addExplanationFactory(Class<T>, ErrorExplainer.ErrorExplanationFactory<? super T>) - Method in class org.protege.editor.core.ui.error.ErrorExplainer
 
addExportFormat(ExportFormat) - Static method in class uk.ac.man.cs.mig.util.graph.export.ExportFormatManager
Adds an ExportFormat to the list of possible ExportFormats
addExtension(String) - Method in class org.protege.ontograf.ui.OntoGrafFileFilter
Adds a filetype "dot" extension to filter against.
addFilter(UsageFilter) - Method in class org.protege.editor.owl.ui.usage.UsageByEntityTreeModel
 
addFilter(UsageFilter) - Method in interface org.protege.editor.owl.ui.usage.UsageTreeModel
 
addFilters(Set<UsageFilter>) - Method in class org.protege.editor.owl.ui.usage.UsageByEntityTreeModel
 
addFilters(Set<UsageFilter>) - Method in interface org.protege.editor.owl.ui.usage.UsageTreeModel
 
addFolder(File) - Method in class org.protege.editor.owl.model.library.OntologyCatalogManager
 
addFrameListener(OWLFrameListener) - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrame
 
addFrameListener(OWLFrameListener) - Method in interface org.protege.editor.owl.ui.frame.OWLFrame
Adds a frame listener to this frame.
addGraphGeneratorListener(GraphGeneratorListener) - Method in interface uk.ac.man.cs.mig.util.graph.controller.GraphGenerator
Adds a listener that is informed of events generated by the GraphGenerator, such as a 'graph changed' event.
addGraphGeneratorListener(GraphGeneratorListener) - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultGraphGenerator
Adds a listener that is informed of events generated by the GraphGenerator, such as a 'graph changed' event.
addGraphModelListener(GraphModelListener) - Method in interface uk.ac.man.cs.mig.util.graph.model.GraphModel
Adds a listener to the model that is notified when events such a Node addition and removal take place.
addGraphModelListener(GraphModelListener) - Method in class uk.ac.man.cs.mig.util.graph.model.impl.AbstractGraphModel
Adds a listener to the model that is notified when events such a Node addition and removal take place.
addGraphSelectionModelListener(GraphSelectionModelListener) - Method in interface uk.ac.man.cs.mig.util.graph.controller.GraphSelectionModel
Adds a listener that is informed of changes in the selection.
addGraphSelectionModelListener(GraphSelectionModelListener) - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultGraphSelectionModel
Adds a listener that is informed of changes in the selection.
addGraphSelectionModelListener(GraphSelectionModelListener) - Method in class uk.ac.man.cs.mig.util.graph.ui.GraphComponent
 
addImport(ImportInfo) - Method in class org.protege.editor.owl.ui.ontology.imports.wizard.OntologyImportWizard
 
addIndividual() - Method in class org.protege.editor.owl.ui.view.individual.OWLIndividualListViewComponent
 
addIOListener(IOListener) - Method in interface org.protege.editor.owl.model.OWLModelManager
 
addIOListener(IOListener) - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
 
addItemListener(ItemListener) - Method in class org.protege.editor.owl.ui.OntologyFormatPanel
 
addLayoutComponent(Component, Object) - Method in class org.protege.editor.core.ui.preferences.PreferencesPanelLayoutManager
 
addLayoutComponent(String, Component) - Method in class org.protege.editor.core.ui.preferences.PreferencesPanelLayoutManager
 
addListener(ErrorLogListener) - Method in class org.protege.editor.core.ui.error.ErrorLog
 
addListener(OWLObjectHierarchyProviderListener<N>) - Method in class org.protege.editor.owl.model.hierarchy.AbstractOWLObjectHierarchyProvider
 
addListener(OWLObjectHierarchyProviderListener<N>) - Method in interface org.protege.editor.owl.model.hierarchy.OWLObjectHierarchyProvider
 
addListener(ReasonerPreferencesListener) - Method in class org.protege.editor.owl.model.inference.ReasonerPreferences
 
addListener(OntologySourcesListener) - Method in class org.protege.editor.owl.model.io.OntologySourcesManager
 
addListener(NamespaceManagerListener) - Method in class org.protege.editor.owl.model.namespace.AbstractNamespaceManager
 
addListener(NamespaceManagerListener) - Method in interface org.protege.editor.owl.model.namespace.NamespaceManager
 
addListener(OntologyVisibilityManagerListener) - Method in interface org.protege.editor.owl.model.OntologyVisibilityManager
 
addListener(OntologyVisibilityManagerListener) - Method in class org.protege.editor.owl.model.OntologyVisibilityManagerImpl
 
addListener(OWLModelManagerListener) - Method in interface org.protege.editor.owl.model.OWLModelManager
 
addListener(OWLModelManagerListener) - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
 
addListener(OWLSelectionModelListener) - Method in class org.protege.editor.owl.model.selection.OWLClassAssertionSelectionModel
 
addListener(OWLSelectionModelListener) - Method in interface org.protege.editor.owl.model.selection.OWLSelectionModel
Adds an OWLSelectionModelListener to the list of listeners.
addListener(OWLSelectionModelListener) - Method in class org.protege.editor.owl.model.selection.OWLSelectionModelImpl
 
addListener(Runnable) - Method in class org.protege.editor.owl.ui.library.NewEntryPanel
 
addListener(PrefixMapperTables.SelectedOntologyListener) - Method in class org.protege.editor.owl.ui.prefix.PrefixMapperTables
 
addListener(OWLEntityRendererListener) - Method in class org.protege.editor.owl.ui.renderer.AbstractOWLEntityRenderer
 
addListener(OWLEntityRendererListener) - Method in interface org.protege.editor.owl.ui.renderer.OWLModelManagerEntityRenderer
 
addListSelectionListener(ListSelectionListener) - Method in class org.protege.editor.core.update.PluginTable
 
addMapping(String, String) - Method in interface org.protege.editor.owl.model.namespace.NamespaceManager
Adds a prefix namespace mapping.
addMapping(String, String) - Method in class org.protege.editor.owl.model.namespace.NamespaceManagerImpl
 
addMapping(String, String) - Method in class org.protege.editor.owl.ui.prefix.PrefixMapperTableModel
 
addModelAttribte(String, String) - Method in class org.protege.editor.owl.model.repository.extractors.RdfExtractorConsumer
 
addNode(PreferenceNode) - Method in class org.protege.editor.core.ui.preferences.node.PreferenceNodeGroup
 
addNode(OWLEntity) - Method in class org.protege.ontograf.common.ProtegeGraphModel
Adds an OWLEntity object as a GraphNode to the model.
addNode(Object) - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultGraphGenerator
Adds a Node/code> to the graph that represents the sepcified object.
addNodeClickedListener(NodeClickedListener) - Method in class uk.ac.man.cs.mig.util.graph.ui.GraphComponent
 
addNodeClickedListener(NodeClickedListener) - Method in class uk.ac.man.cs.mig.util.graph.ui.GraphView
Adds a NodeClickedListener which is informed when a node is clicked (pressed and released).
addObject(Collection<O>) - Method in class org.protege.editor.core.ui.list.RemovableObjectList
 
addOntologyChangeListener(OWLOntologyChangeListener) - Method in interface org.protege.editor.owl.model.OWLModelManager
Adds an ontology history listener.
addOntologyChangeListener(OWLOntologyChangeListener) - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
 
addOntologyProperty(String) - Method in class org.protege.editor.owl.model.repository.extractors.RdfExtractorConsumer
 
addOptionsChangedListener(OptionsChangedListener) - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.options.OWLVizViewOptions
 
addOptionsPage(OptionsPage, String) - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.options.OptionsDialog
 
addPanel(OWLClassExpressionEditor) - Method in class org.protege.editor.owl.ui.editor.OWLClassDescriptionEditor
 
addParent(DefaultGraphNode) - Method in class uk.ac.man.cs.mig.util.graph.model.impl.DefaultGraphNode
 
addParentEdges(Object) - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultGraphGenerator
Creates the Edges that link the Node which represents the specified object to the Nodes that represent the parents of the specified object.
addPopupComponentListener(PopupComponentListener) - Method in class uk.ac.man.cs.mig.util.popup.PopupComponent
Adds a PopupComponentListener, which is informed when the popup closes.
addPopupPage(OWLObjectPopupPage) - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.popup.PopupManager
 
AddPrefixMappingAction - Class in org.protege.editor.owl.ui.prefix
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 22-Sep-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

AddPrefixMappingAction(PrefixMapperTables) - Constructor for class org.protege.editor.owl.ui.prefix.AddPrefixMappingAction
 
addPropertyChangeListener(PropertyChangeListener) - Method in class org.protege.editor.core.ui.wizard.WizardModel
 
addPropertyChangeListener(PropertyChangeListener) - Method in class org.protege.editor.owl.model.selection.axioms.AbstractAxiomSelectionStrategy
 
addPropertyChangeListener(PropertyChangeListener) - Method in interface org.protege.editor.owl.model.selection.axioms.AxiomSelectionStrategy
 
addPropertyChangeListener(PropertyChangeListener) - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.options.OWLVizProperties
Deprecated. Adds a property changes listener that is informed of changes in properties.
addPropertyChangeListener(PropertyChangeListener) - Method in interface uk.ac.man.cs.mig.util.graph.controller.Controller
Adds a property change listener, which is informed when properties such as renderers, factories etc.
addPropertyChangeListener(PropertyChangeListener) - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultController
Adds a property change listener, which is informed when properties such as renderers, factories etc.
addPropertyValue(StringBuffer, String, Object) - Static method in class org.protege.editor.owl.model.library.LibraryUtilities
 
addReasonerFactories(Set<ProtegeOWLReasonerPlugin>) - Method in class org.protege.editor.owl.model.inference.OWLReasonerManagerImpl
 
addRecent(URI) - Method in class org.protege.editor.owl.OWLEditorKit
 
addRendering(OWLEntity) - Method in interface org.protege.editor.owl.model.cache.OWLEntityRenderingCache
 
addRendering(OWLEntity) - Method in class org.protege.editor.owl.model.cache.OWLEntityRenderingCacheImpl
 
addRepository(OntologyRepository) - Method in class org.protege.editor.core.OntologyRepositoryManager
 
addRoot(OWLClass) - Method in class org.protege.editor.owl.model.hierarchy.cls.InferredOWLClassHierarchyProvider
 
addRootFolder(File) - Method in interface org.protege.editor.owl.model.OWLModelManager
 
addRootFolder(File) - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
 
addRow(OWLFrameSectionRow<R, A, E>) - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSection
 
addSection(OWLFrameSection<? extends Object, ? extends Object, ? extends Object>, int) - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrame
 
addSection(OWLFrameSection<? extends Object, ? extends Object, ? extends Object>) - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrame
 
addSelectedItems() - Method in class org.protege.editor.owl.ui.selector.OWLEntitySelectorPanel
 
addSelectionListener(ChangeListener) - Method in class org.protege.editor.owl.ui.editor.IRIFromEntityEditor
 
addSelectionListener(ChangeListener) - Method in class org.protege.editor.owl.ui.selector.AbstractSelectorPanel
 
addSelectionListener(ChangeListener) - Method in class org.protege.editor.owl.ui.selector.OWLAnnotationPropertySelectorPanel
 
addSelectionListener(ChangeListener) - Method in class org.protege.editor.owl.ui.selector.OWLClassSelectorPanel
 
addSelectionListener(ChangeListener) - Method in class org.protege.editor.owl.ui.selector.OWLDataPropertySelectorPanel
 
addSelectionListener(ChangeListener) - Method in class org.protege.editor.owl.ui.selector.OWLDataTypeSelectorPanel
 
addSelectionListener(ChangeListener) - Method in class org.protege.editor.owl.ui.selector.OWLEntitySelectorPanel
 
addSelectionListener(ChangeListener) - Method in class org.protege.editor.owl.ui.selector.OWLIndividualSelectorPanel
 
addSelectionListener(ChangeListener) - Method in class org.protege.editor.owl.ui.selector.OWLObjectPropertySelectorPanel
 
addSelectionListener(OWLVizSelectionListener) - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizSelectionModel
 
addSelectionProviderListener(SelectionProviderListener) - Method in class org.protege.editor.core.ui.util.AbstractSelectionProvider
 
addSelectionProviderListener(SelectionProviderListener) - Method in interface org.protege.editor.core.ui.util.SelectionProvider
 
addSeparator() - Method in class org.protege.editor.core.ui.view.ViewBar
 
addStatusChangedListener(InputVerificationStatusChangedListener) - Method in class org.protege.editor.core.ui.OpenFromURLPanel
 
addStatusChangedListener(InputVerificationStatusChangedListener) - Method in interface org.protege.editor.core.ui.util.VerifiedInputEditor
 
addStatusChangedListener(InputVerificationStatusChangedListener) - Method in class org.protege.editor.owl.ui.clsdescriptioneditor.ExpressionEditor
 
addStatusChangedListener(InputVerificationStatusChangedListener) - Method in class org.protege.editor.owl.ui.CreateDefinedClassPanel
 
addStatusChangedListener(InputVerificationStatusChangedListener) - Method in class org.protege.editor.owl.ui.editor.AbstractRestrictionCreatorPanel
 
addStatusChangedListener(InputVerificationStatusChangedListener) - Method in class org.protege.editor.owl.ui.editor.IRITextEditor
 
addStatusChangedListener(InputVerificationStatusChangedListener) - Method in class org.protege.editor.owl.ui.editor.OWLAnnotationEditor
 
addStatusChangedListener(InputVerificationStatusChangedListener) - Method in class org.protege.editor.owl.ui.editor.OWLClassDescriptionEditor
 
addStatusChangedListener(InputVerificationStatusChangedListener) - Method in class org.protege.editor.owl.ui.editor.OWLClassExpressionExpressionEditor
 
addStatusChangedListener(InputVerificationStatusChangedListener) - Method in class org.protege.editor.owl.ui.editor.OWLClassExpressionSetEditor
 
addStatusChangedListener(InputVerificationStatusChangedListener) - Method in class org.protege.editor.owl.ui.editor.OWLClassSelectorWrapper
 
addStatusChangedListener(InputVerificationStatusChangedListener) - Method in class org.protege.editor.owl.ui.editor.OWLDataPropertyEditor
 
addStatusChangedListener(InputVerificationStatusChangedListener) - Method in class org.protege.editor.owl.ui.editor.OWLDataPropertyRelationshipEditor
 
addStatusChangedListener(InputVerificationStatusChangedListener) - Method in class org.protege.editor.owl.ui.editor.OWLDataPropertySetEditor
 
addStatusChangedListener(InputVerificationStatusChangedListener) - Method in class org.protege.editor.owl.ui.editor.OWLGeneralAxiomEditor
 
addStatusChangedListener(InputVerificationStatusChangedListener) - Method in class org.protege.editor.owl.ui.editor.OWLIndividualSetEditor
 
addStatusChangedListener(InputVerificationStatusChangedListener) - Method in class org.protege.editor.owl.ui.editor.OWLObjectPropertyChainEditor
 
addStatusChangedListener(InputVerificationStatusChangedListener) - Method in class org.protege.editor.owl.ui.editor.OWLObjectPropertyEditor
 
addStatusChangedListener(InputVerificationStatusChangedListener) - Method in class org.protege.editor.owl.ui.editor.OWLObjectPropertyExpressionEditor
 
addStatusChangedListener(InputVerificationStatusChangedListener) - Method in class org.protege.editor.owl.ui.editor.OWLObjectPropertySetEditor
 
addStatusChangedListener(InputVerificationStatusChangedListener) - Method in class org.protege.editor.owl.ui.editor.OWLObjectPropertyTabbedSetEditor
 
addStatusChangedListener(InputVerificationStatusChangedListener) - Method in class org.protege.editor.owl.ui.editor.OWLPropertySetEditor
 
addStatusChangedListener(InputVerificationStatusChangedListener) - Method in class org.protege.editor.owl.ui.editor.SWRLRuleEditor
 
addStatusChangedListener(InputVerificationStatusChangedListener) - Method in class org.protege.editor.owl.ui.OWLEntityCreationPanel
 
addStatusChangedListener(InputVerificationStatusChangedListener) - Method in class org.protege.editor.owl.ui.rename.RenameEntitiesPanel
 
addStatusChangedListener(InputVerificationStatusChangedListener) - Method in class org.protege.editor.owl.ui.selector.AbstractSelectorPanel
 
addTab(WorkspaceTab) - Method in class org.protege.editor.core.ui.workspace.TabbedWorkspace
Convenience method to add a workspace tab.
addTabForPlugin(WorkspaceTabPlugin) - Method in class org.protege.editor.core.ui.workspace.TabbedWorkspace
 
addThumbnailViewSourceListener(ThumbnailViewSourceListener) - Method in class uk.ac.man.cs.mig.util.graph.ui.GraphComponent
Adds a ThumbnailViewSourceListener to the ThumbnailViewSource so that the ThumbnailView is informed of events that it might be interested in.
addThumbnailViewSourceListener(ThumbnailViewSourceListener) - Method in interface uk.ac.man.cs.mig.util.graph.ui.ThumbnailViewSource
Adds a ThumbnailViewSourceListener to the ThumbnailViewSource so that the ThumbnailView is informed of events that it might be interested in.
addToPopupMenu(OWLFrameListPopupMenuAction<R>) - Method in class org.protege.editor.owl.ui.framelist.OWLFrameList
 
addUndoManagerListener(UndoManagerListener) - Method in interface org.protege.editor.owl.model.history.HistoryManager
 
addUndoManagerListener(UndoManagerListener) - Method in class org.protege.editor.owl.model.history.HistoryManagerImpl
 
addVerticalStrut(int) - Method in class org.protege.editor.core.ui.preferences.PreferencesPanel
 
addView(View) - Method in class org.protege.editor.core.ui.view.ViewHolder
Adds a View to the holder.
addView(View, String) - Method in class org.protege.editor.core.ui.view.ViewsPane
 
addVisualisedObjectManagerListener(VisualisedObjectManagerListener) - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultVisualisedObjectManager
Adds a VisualisedObjectManagerListener, which is notified of events relating to visualised object addition/removal and change.
addVisualisedObjectManagerListener(VisualisedObjectManagerListener) - Method in interface uk.ac.man.cs.mig.util.graph.controller.VisualisedObjectManager
Adds a VisualisedObjectManagerListener, which is notified of events relating to visualised object addition/removal and change.
addWizardListener(WizardEventListener) - Method in class uk.ac.man.cs.mig.util.wizard.Wizard
Adds a listener to the Wizard
addWorkspace(Workspace) - Method in class org.protege.editor.core.ui.workspace.WorkspaceManager
 
adjustBeginLineColumn(int, int) - Method in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.SimpleCharStream
Method to adjust line and column numbers for the start of a token.
afterLoad(IOListenerEvent) - Method in class org.protege.editor.owl.model.io.IOListener
 
afterLoad(IOListenerEvent) - Method in class org.protege.editor.owl.model.io.OntologySourcesManager
 
afterSave(IOListenerEvent) - Method in class org.protege.editor.owl.model.io.IOListener
 
afterSave(IOListenerEvent) - Method in class org.protege.editor.owl.model.io.OntologySourcesManager
 
Algorithm - Interface in org.protege.editor.owl.model.library.folder
 
AllAxiomsStrategy - Class in org.protege.editor.owl.model.selection.axioms
User: nickdrummond Date: May 21, 2008
AllAxiomsStrategy() - Constructor for class org.protege.editor.owl.model.selection.axioms.AllAxiomsStrategy
 
ALLCLS_NAME - Static variable in class uk.ac.man.cs.mig.coode.owlviz.ui.renderer.OWLClsNodeRenderer
 
AllDifferentCreator - Class in org.protege.editor.owl.model.refactor
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 01-Sep-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

AllDifferentCreator(OWLDataFactory, OWLOntology, Set<OWLOntology>) - Constructor for class org.protege.editor.owl.model.refactor.AllDifferentCreator
 
AllLoadedOntologiesSelectionStrategy - Class in org.protege.editor.owl.model.selection.ontologies
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Jun 6, 2008

AllLoadedOntologiesSelectionStrategy(OWLModelManager) - Constructor for class org.protege.editor.owl.model.selection.ontologies.AllLoadedOntologiesSelectionStrategy
 
AllOntologiesStrategyAction - Class in org.protege.editor.owl.ui.action
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Jun 6, 2008

AllOntologiesStrategyAction() - Constructor for class org.protege.editor.owl.ui.action.AllOntologiesStrategyAction
 
ALLOW_PROTEGE_TO_OVERRIDE_RENDERER - Static variable in class org.protege.editor.owl.ui.renderer.OWLRendererPreferences
 
ALPHA - Static variable in interface uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.DotParserConstants
 
ALPHANUM - Static variable in interface uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.DotParserConstants
 
AltStartupAction - Class in org.protege.editor.core.ui.action.start
 
AltStartupAction() - Constructor for class org.protege.editor.core.ui.action.start.AltStartupAction
 
AltStartupActionPlugin - Class in org.protege.editor.core.ui.action.start
 
AltStartupActionPlugin(JFrame, IExtension) - Constructor for class org.protege.editor.core.ui.action.start.AltStartupActionPlugin
 
AltStartupActionPluginLoader - Class in org.protege.editor.core.ui.action.start
 
AltStartupActionPluginLoader(JFrame) - Constructor for class org.protege.editor.core.ui.action.start.AltStartupActionPluginLoader
 
AmalgamateDisjointClassesAction - Class in org.protege.editor.owl.ui.action
Author: Nick Drummond
The University Of Manchester
BioHealth Informatics Group
Date: May 19, 2008
AmalgamateDisjointClassesAction() - Constructor for class org.protege.editor.owl.ui.action.AmalgamateDisjointClassesAction
 
AmalgamateSuperClassesAction - Class in org.protege.editor.owl.ui.action
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 15-Aug-2007

AmalgamateSuperClassesAction() - Constructor for class org.protege.editor.owl.ui.action.AmalgamateSuperClassesAction
 
ANNOTATION_PROPERTY_COLOR_KEY - Static variable in class org.protege.editor.core.ProtegeProperties
 
ANNOTATION_PROPERTY_VIEW_CATEGORY - Static variable in class org.protege.editor.core.ProtegeProperties
 
AnnotationAxiomsStrategy - Class in org.protege.editor.owl.model.selection.axioms
User: nickdrummond Date: May 21, 2008
AnnotationAxiomsStrategy() - Constructor for class org.protege.editor.owl.model.selection.axioms.AnnotationAxiomsStrategy
 
AnnotationContainer - Interface in org.protege.editor.owl.model
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Jun 8, 2009

AnnotationDeleter - Class in org.protege.editor.owl.model.refactor
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 08-Jul-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

AnnotationDeleter(Set<OWLOntology>) - Constructor for class org.protege.editor.owl.model.refactor.AnnotationDeleter
 
AnnotationPreferences - Class in org.protege.editor.owl.ui.preferences
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 14-Aug-2007

AnnotationPreferences() - Constructor for class org.protege.editor.owl.ui.preferences.AnnotationPreferences
 
AnnotationPreferencesPanel - Class in org.protege.editor.owl.ui.preferences
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 14-Aug-2007

AnnotationPreferencesPanel() - Constructor for class org.protege.editor.owl.ui.preferences.AnnotationPreferencesPanel
 
AnnotationRendererPanel - Class in org.protege.editor.owl.ui.renderer
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Apr 8, 2008

AnnotationRendererPanel(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.renderer.AnnotationRendererPanel
 
ANNOTATIONS - Static variable in class org.protege.editor.owl.ui.renderer.OWLRendererPreferences
 
AnonymousClassesView - Class in org.protege.editor.owl.ui.view
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Nov 24, 2008

AnonymousClassesView() - Constructor for class org.protege.editor.owl.ui.view.AnonymousClassesView
 
AnonymousDefinedClassManager - Class in org.protege.editor.owl.model.classexpression.anonymouscls
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Nov 24, 2008

AnonymousDefinedClassManager(OWLModelManager) - Constructor for class org.protege.editor.owl.model.classexpression.anonymouscls.AnonymousDefinedClassManager
 
AnticipateOntologyIdPage - Class in org.protege.editor.owl.ui.ontology.imports.wizard.page
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 12-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

AnticipateOntologyIdPage(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.ontology.imports.wizard.page.AnticipateOntologyIdPage
 
APPLICATION_DIR_PROP - Static variable in class org.protege.common.CommonProtegeProperties
 
applyChange(OWLOntologyChange) - Method in interface org.protege.editor.owl.model.OWLModelManager
 
applyChange(OWLOntologyChange) - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
 
applyChanges() - Method in class org.protege.editor.core.ui.preferences.PreferencesPanel
 
applyChanges() - Method in class org.protege.editor.core.update.PluginPreferencesPanel
 
applyChanges(List<? extends OWLOntologyChange>) - Method in interface org.protege.editor.owl.model.OWLModelManager
 
applyChanges(List<? extends OWLOntologyChange>) - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
 
applyChanges() - Method in class org.protege.editor.owl.ui.inference.DIGReasonerPreferencesPanel
 
applyChanges() - Method in class org.protege.editor.owl.ui.inference.DisplayedInferencesPreferencePanel
 
applyChanges() - Method in class org.protege.editor.owl.ui.inference.PrecomputePreferencesPanel
 
applyChanges() - Method in class org.protege.editor.owl.ui.inference.TabbedReasonerPreferencesPanel
 
applyChanges() - Method in class org.protege.editor.owl.ui.ontology.OntologyPreferencesPanel
 
applyChanges() - Method in class org.protege.editor.owl.ui.preferences.AnnotationPreferencesPanel
 
applyChanges() - Method in class org.protege.editor.owl.ui.preferences.GeneralPreferencesPanel
 
applyChanges() - Method in class org.protege.editor.owl.ui.preferences.NewEntitiesPreferencesPanel
 
applyChanges() - Method in class org.protege.editor.owl.ui.preferences.SavePreferencesPanel
 
applyChanges() - Method in class org.protege.editor.owl.ui.renderer.AnnotationRendererPanel
 
applyChanges() - Method in class org.protege.editor.owl.ui.renderer.conf.RendererPreferencesPanel
 
applyChanges() - Method in class org.protege.editor.owl.ui.tree.OWLTreePreferencesPanel
 
applyChanges() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.options.OWLVizPreferencesPane
 
applyOptions() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.options.DisplayOptionsPage
 
applyOptions() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.options.GlobalOptionsPage
 
applyOptions() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.options.LayoutDirectionOptionsPage
 
applyOptions() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.options.ModeOptionsPage
 
applyOptions() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.options.OptionsDialog
 
applyOptions() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.options.OptionsPage
 
applyOptions() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.options.UIOptionsPage
 
applyPreferences() - Method in class org.protege.editor.core.ui.preferences.PreferencesDialogPanel
 
areClassesDisjoint(OWLClass, OWLClass) - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.renderer.OWLClsNodeRenderer
Determines if a class is disjoint from another class
ARG_PROPERTY - Static variable in class org.protege.editor.core.platform.PlatformArguments
 
askUserForRepository(JComponent, XMLCatalog, List<CatalogEntryManager>) - Static method in class org.protege.editor.owl.ui.library.AddEntryDialog
 
ASSERTED_HIERARCHY - Static variable in class uk.ac.man.cs.mig.coode.owlviz.ui.exportwizard.SpecifyHierarchyPage
 
AssertedClassHierarchyProvider - Class in org.protege.editor.owl.model.hierarchy
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 17-Jan-2007

AssertedClassHierarchyProvider(OWLOntologyManager) - Constructor for class org.protege.editor.owl.model.hierarchy.AssertedClassHierarchyProvider
 
AssertedSuperClassHierarchyProvider - Class in org.protege.editor.owl.model.hierarchy
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 14-Sep-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

AssertedSuperClassHierarchyProvider(OWLModelManager) - Constructor for class org.protege.editor.owl.model.hierarchy.AssertedSuperClassHierarchyProvider
 
attr_stmt() - Method in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.DotParser
 
AUTO_UPDATE_KEY - Static variable in class org.protege.editor.core.update.PluginManager
 
AUTO_UPDATE_PROP - Static variable in class org.protege.editor.owl.model.library.LibraryUtilities
 
AutoCompleterMatcher - Interface in org.protege.editor.owl.ui.clsdescriptioneditor
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: May 4, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

AutoCompleterMatcherImpl - Class in org.protege.editor.owl.ui.clsdescriptioneditor
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: May 4, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

AutoCompleterMatcherImpl(OWLModelManager) - Constructor for class org.protege.editor.owl.ui.clsdescriptioneditor.AutoCompleterMatcherImpl
 
AutoIDException - Exception in org.protege.editor.owl.model.entity
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Jul 25, 2008

AutoIDException(String) - Constructor for exception org.protege.editor.owl.model.entity.AutoIDException
 
AutoIDGenerator - Interface in org.protege.editor.owl.model.entity
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Jul 25, 2008

AutoMappedRepositoryIRIMapper - Class in org.protege.editor.owl.model.io
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Sep 1, 2008

A custom URIMapper.

AutoMappedRepositoryIRIMapper(OWLModelManager) - Constructor for class org.protege.editor.owl.model.io.AutoMappedRepositoryIRIMapper
 
axiom - Variable in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSectionRow
 
AxiomAnnotationButton - Class in org.protege.editor.owl.ui.framelist
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Sep 1, 2008

AxiomAnnotationButton(ActionListener) - Constructor for class org.protege.editor.owl.ui.framelist.AxiomAnnotationButton
 
AxiomAnnotationPanel - Class in org.protege.editor.owl.ui.axiom
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Sep 3, 2008

AxiomAnnotationPanel(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.axiom.AxiomAnnotationPanel
 
AxiomAnnotationsList - Class in org.protege.editor.owl.ui.axiom
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Jun 8, 2009

AxiomAnnotationsList(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.axiom.AxiomAnnotationsList
 
AxiomListFrame - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 19-Dec-2007

AxiomListFrame(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.frame.AxiomListFrame
 
AxiomListFrameSection - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 19-Dec-2007

AxiomListFrameSection(OWLEditorKit, OWLFrame<Set<OWLAxiom>>) - Constructor for class org.protege.editor.owl.ui.frame.AxiomListFrameSection
 
AxiomListFrameSectionRow - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 19-Dec-2007

AxiomListFrameSectionRow(OWLEditorKit, OWLFrameSection<Set<OWLAxiom>, OWLAxiom, OWLAxiom>, OWLOntology, Set<OWLAxiom>, OWLAxiom) - Constructor for class org.protege.editor.owl.ui.frame.AxiomListFrameSectionRow
 
AxiomMetricsViewComponent - Class in org.protege.editor.owl.ui.metrics
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 30-Jul-2007

AxiomMetricsViewComponent() - Constructor for class org.protege.editor.owl.ui.metrics.AxiomMetricsViewComponent
 
AxiomSelectionStrategy - Interface in org.protege.editor.owl.model.selection.axioms
User: nickdrummond Date: May 20, 2008
AxiomTypeSelectorPanel - Class in org.protege.editor.owl.ui.ontology.wizard.move.bytype
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Nov 28, 2008

AxiomTypeSelectorPanel(MoveAxiomsByTypeKit) - Constructor for class org.protege.editor.owl.ui.ontology.wizard.move.bytype.AxiomTypeSelectorPanel
 
AxiomTypeStrategy - Class in org.protege.editor.owl.model.selection.axioms
User: nickdrummond Date: May 21, 2008
AxiomTypeStrategy() - Constructor for class org.protege.editor.owl.model.selection.axioms.AxiomTypeStrategy
 

B

BACK_BUTTON_ACTION_COMMAND - Static variable in class org.protege.editor.core.ui.wizard.Wizard
The String-based action command for the 'Back' button.
BACK_BUTTON_ENABLED_PROPERTY - Static variable in class org.protege.editor.core.ui.wizard.WizardModel
Property identification String for the Back button's enabled state
BACK_BUTTON_ICON_PROPERTY - Static variable in class org.protege.editor.core.ui.wizard.WizardModel
Property identification String for the Back button's icon
BACK_BUTTON_TEXT_PROPERTY - Static variable in class org.protege.editor.core.ui.wizard.WizardModel
Property identification String for the Back button's text
BackgroundTask - Interface in org.protege.editor.core.ui.progress
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: May 8, 2009

BackgroundTaskLabel - Class in org.protege.editor.core.ui.progress
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: May 8, 2009

BackgroundTaskLabel(BackgroundTaskManager) - Constructor for class org.protege.editor.core.ui.progress.BackgroundTaskLabel
 
BackgroundTaskListener - Interface in org.protege.editor.core.ui.progress
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: May 8, 2009

BackgroundTaskListPanel - Class in org.protege.editor.core.ui.progress
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: May 8, 2009

BackgroundTaskListPanel(BackgroundTaskManager) - Constructor for class org.protege.editor.core.ui.progress.BackgroundTaskListPanel
 
BackgroundTaskManager - Class in org.protege.editor.core.ui.progress
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: May 8, 2009

BackgroundTaskManager() - Constructor for class org.protege.editor.core.ui.progress.BackgroundTaskManager
 
backup(int) - Method in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.SimpleCharStream
 
BASE_URI_KEY - Static variable in class org.protege.editor.owl.ui.ontology.OntologyPreferences
 
BasicBlackboxExplanationService - Class in org.protege.editor.owl.ui.explanation.impl
A very basic explanation service that will provide basic explanation until Matthew's explanation service is ready.
BasicBlackboxExplanationService() - Constructor for class org.protege.editor.owl.ui.explanation.impl.BasicBlackboxExplanationService
 
BasicClassExpressionGenerator - Class in org.protege.editor.owl.ui.explanation.impl
 
BasicClassExpressionGenerator(OWLDataFactory) - Constructor for class org.protege.editor.owl.ui.explanation.impl.BasicClassExpressionGenerator
 
BasicLinkedOWLObjectTable - Class in org.protege.editor.owl.ui.table
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 14-Sep-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

BasicLinkedOWLObjectTable(TableModel, OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.table.BasicLinkedOWLObjectTable
 
BasicOWLTable - Class in org.protege.editor.owl.ui.table
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 23-May-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

BasicOWLTable(TableModel) - Constructor for class org.protege.editor.owl.ui.table.BasicOWLTable
 
beforeLoad(IOListenerEvent) - Method in class org.protege.editor.owl.model.io.IOListener
 
beforeLoad(IOListenerEvent) - Method in class org.protege.editor.owl.model.io.OntologySourcesManager
 
beforeSave(IOListenerEvent) - Method in class org.protege.editor.owl.model.io.IOListener
 
beforeSave(IOListenerEvent) - Method in class org.protege.editor.owl.model.io.OntologySourcesManager
 
beginColumn - Variable in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.Token
beginLine and beginColumn describe the position of the first character of this token; endLine and endColumn describe the position of the last character of this token.
beginLine - Variable in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.Token
beginLine and beginColumn describe the position of the first character of this token; endLine and endColumn describe the position of the last character of this token.
BeginToken() - Method in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.SimpleCharStream
 
BookMarkedURIManager - Class in org.protege.editor.core
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 12-May-2007

BooleanPreferenceNode - Class in org.protege.editor.core.ui.preferences.node
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 08-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

BooleanPreferenceNode(String) - Constructor for class org.protege.editor.core.ui.preferences.node.BooleanPreferenceNode
 
borderStroke - Variable in class org.protege.ontograf.ui.FrameTooltipNode
 
BOTTOM_RESULTS_VIEW - Static variable in class org.protege.editor.core.ui.workspace.Workspace
 
bringViewToFront(String) - Method in class org.protege.editor.core.ui.view.ViewsPane
 
bringViewToFront(String) - Method in class org.protege.editor.core.ui.workspace.WorkspaceViewManager
If the selected workspace tab is a views tab, then this method requests that the view specified by the view id is brought to the front.
bringViewToFront(String) - Method in class org.protege.editor.core.ui.workspace.WorkspaceViewsTab
 
browseForFile() - Method in class org.protege.editor.core.ui.util.FilePathPanel
 
browseForFileName() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.exportwizard.SpecifyFileNamePage
Pops up the JFileChooser to allow a pathname to be selected, and a file name entered.
browseForFolder() - Method in class org.protege.editor.core.ui.util.FilePathPanel
 
bufcolumn - Variable in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.SimpleCharStream
 
buffer - Variable in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.SimpleCharStream
 
bufline - Variable in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.SimpleCharStream
 
bufpos - Variable in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.SimpleCharStream
 
buildMenu() - Method in class org.protege.editor.core.ui.menu.MenuBuilder
 
BUNDLE_DIR_PROP - Static variable in class org.protege.editor.core.BundleManager
 
BUNDLE_EXTRA_PROP - Static variable in class org.protege.editor.core.BundleManager
 
BUNDLE_EXTRA_SEPARATOR - Static variable in class org.protege.editor.core.BundleManager
 
BUNDLE_WITHOUT_PLUGIN_XML - Static variable in class org.protege.editor.core.BundleManager
 
BundleBuilder - Class in org.protege.editor.core.util
 
BundleBuilder(File) - Constructor for class org.protege.editor.core.util.BundleBuilder
 
BundleManager - Class in org.protege.editor.core
 
BundleManager(BundleContext) - Constructor for class org.protege.editor.core.BundleManager
 
BUTTON_DIMENSION - Static variable in class org.protege.editor.owl.ui.framelist.OWLFrameList
 
BUTTON_MARGIN - Static variable in class org.protege.editor.owl.ui.framelist.OWLFrameList
 

C

calculateTabHeight(int, int, int) - Method in class org.protege.editor.core.ui.tabbedpane.ViewTabbedPaneUI
 
calculateTabWidth(int, int, FontMetrics) - Method in class org.protege.editor.core.ui.tabbedpane.ViewTabbedPaneUI
 
CALCULATING - Static variable in class org.protege.editor.owl.ui.library.EditUriAction
 
canAcceptDrop(List<OWLObject>) - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSection
 
canAcceptDrop(List<OWLObject>) - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSectionRow
 
canAcceptDrop(List<OWLObject>) - Method in class org.protege.editor.owl.ui.frame.annotationproperty.OWLAnnotationPropertyDomainFrameSection
 
canAcceptDrop(List<OWLObject>) - Method in class org.protege.editor.owl.ui.frame.annotationproperty.OWLAnnotationPropertyRangeFrameSection
 
canAcceptDrop(List<OWLObject>) - Method in class org.protege.editor.owl.ui.frame.annotationproperty.OWLSubAnnotationPropertyFrameSection
 
canAcceptDrop(List<OWLObject>) - Method in class org.protege.editor.owl.ui.frame.cls.OWLClassAssertionAxiomMembersSection
 
canAcceptDrop(List<OWLObject>) - Method in class org.protege.editor.owl.ui.frame.cls.OWLDisjointClassesAxiomFrameSection
 
canAcceptDrop(List<OWLObject>) - Method in class org.protege.editor.owl.ui.frame.cls.OWLEquivalentClassesAxiomFrameSection
 
canAcceptDrop(List<OWLObject>) - Method in class org.protege.editor.owl.ui.frame.cls.OWLSubClassAxiomFrameSection
 
canAcceptDrop(List<OWLObject>) - Method in class org.protege.editor.owl.ui.frame.individual.OWLClassAssertionAxiomTypeFrameSection
 
canAcceptDrop(List<OWLObject>) - Method in class org.protege.editor.owl.ui.frame.objectproperty.OWLObjectPropertyRangeFrameSection
 
canAcceptDrop(List<OWLObject>) - Method in class org.protege.editor.owl.ui.frame.OWLAnnotationFrameSection
 
canAcceptDrop(List<OWLObject>) - Method in interface org.protege.editor.owl.ui.frame.OWLFrameObject
 
canAcceptDrop(List<OWLObject>) - Method in class org.protege.editor.owl.ui.frame.property.AbstractPropertyDomainFrameSection
 
canAcceptDrop(Object, Object) - Method in class org.protege.editor.owl.ui.view.AbstractOWLPropertyHierarchyViewComponent
 
canAcceptDrop(Object, Object) - Method in class org.protege.editor.owl.ui.view.dataproperty.OWLDataPropertyHierarchyViewComponent
 
canAcceptDrop(Object, Object) - Method in class org.protege.editor.owl.ui.view.objectproperty.OWLObjectPropertyHierarchyViewComponent
 
canAdd() - Method in class org.protege.editor.core.ui.list.MList.TestHeader
 
canAdd() - Method in interface org.protege.editor.core.ui.list.MListSectionHeader
 
canAdd() - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSection
 
canAdd() - Method in class org.protege.editor.owl.ui.frame.AxiomListFrameSection
 
canAdd() - Method in class org.protege.editor.owl.ui.frame.cls.InheritedAnonymousClassesFrameSection
 
canAdd() - Method in class org.protege.editor.owl.ui.frame.SWRLRulesFrameSection
 
cancel() - Method in class org.protege.editor.core.ui.wizard.WizardController
 
cancel() - Method in class org.protege.editor.owl.ui.clsdescriptioneditor.OWLAutoCompleter
 
CANCEL_BUTTON_ACTION_COMMAND - Static variable in class org.protege.editor.core.ui.wizard.Wizard
The String-based action command for the 'Cancel' button.
CANCEL_BUTTON_ENABLED_PROPERTY - Static variable in class org.protege.editor.core.ui.wizard.WizardModel
Property identification String for the Cancel button's enabled state
CANCEL_BUTTON_ICON_PROPERTY - Static variable in class org.protege.editor.core.ui.wizard.WizardModel
Property identification String for the Cancel button's icon
CANCEL_BUTTON_TEXT_PROPERTY - Static variable in class org.protege.editor.core.ui.wizard.WizardModel
Property identification String for the Cancel button's text
CANCEL_RETURN_CODE - Static variable in class org.protege.editor.core.ui.wizard.Wizard
Indicates that the 'Cancel' button was pressed to dispose the dialog, or the user pressed the dispose box in the corner of the window.
cancelButtonPressed() - Method in class uk.ac.man.cs.mig.util.wizard.Wizard
Called when the cancel button is pressed.
cancelPressed(WizardEvent) - Method in interface uk.ac.man.cs.mig.util.wizard.WizardEventListener
 
canCopy() - Method in class org.protege.editor.owl.ui.framelist.OWLFrameList
 
canCopy() - Method in class org.protege.editor.owl.ui.view.AnonymousClassesView
 
canCopy() - Method in interface org.protege.editor.owl.ui.view.Copyable
Determines whether or not at least one OWLObject can be copied.
canCreateNew() - Method in class org.protege.editor.owl.ui.OWLIndividualListComponent
 
canCreateNew() - Method in class org.protege.editor.owl.ui.view.cls.ToldOWLClassHierarchyViewComponent
 
canCreateNew() - Method in interface org.protege.editor.owl.ui.view.CreateNewTarget
 
canCreateNew() - Method in class org.protege.editor.owl.ui.view.individual.OWLIndividualListViewComponent
 
canCreateNew() - Method in class org.protege.editor.owl.ui.view.individual.OWLIndividualsByTypeViewComponent
 
canCreateNewChild() - Method in class org.protege.editor.owl.ui.view.AbstractOWLPropertyHierarchyViewComponent
 
canCreateNewChild() - Method in class org.protege.editor.owl.ui.view.annotationproperty.OWLAnnotationPropertyHierarchyViewComponent
 
canCreateNewChild() - Method in class org.protege.editor.owl.ui.view.cls.ToldOWLClassHierarchyViewComponent
 
canCreateNewChild() - Method in interface org.protege.editor.owl.ui.view.CreateNewChildTarget
 
canCreateNewSibling() - Method in class org.protege.editor.owl.ui.view.AbstractOWLPropertyHierarchyViewComponent
 
canCreateNewSibling() - Method in class org.protege.editor.owl.ui.view.annotationproperty.OWLAnnotationPropertyHierarchyViewComponent
 
canCreateNewSibling() - Method in class org.protege.editor.owl.ui.view.cls.ToldOWLClassHierarchyViewComponent
 
canCreateNewSibling() - Method in interface org.protege.editor.owl.ui.view.CreateNewSiblingTarget
 
canCut() - Method in class org.protege.editor.owl.ui.framelist.OWLFrameList
 
canCut() - Method in interface org.protege.editor.owl.ui.view.Cuttable
 
canDelete() - Method in class org.protege.editor.owl.ui.framelist.OWLFrameList
 
canDelete() - Method in class org.protege.editor.owl.ui.OWLIndividualListComponent
 
canDelete() - Method in class org.protege.editor.owl.ui.view.AbstractOWLEntityHierarchyViewComponent
 
canDelete() - Method in class org.protege.editor.owl.ui.view.AnonymousClassesView
 
canDelete() - Method in interface org.protege.editor.owl.ui.view.Deleteable
 
canDelete() - Method in class org.protege.editor.owl.ui.view.individual.OWLIndividualListViewComponent
 
canDelete() - Method in class org.protege.editor.owl.ui.view.individual.OWLIndividualsByTypeViewComponent
 
canDisplay(OWLEntity) - Method in interface org.protege.editor.owl.model.OWLEntityDisplayProvider
 
canDrop(Object, Object) - Method in interface org.protege.editor.owl.ui.tree.OWLTreeDragAndDropHandler
 
canEdit(Object) - Method in class org.protege.editor.owl.ui.editor.IRIFromEntityEditor
 
canEdit(Object) - Method in class org.protege.editor.owl.ui.editor.IRITextEditor
 
canEdit(Object) - Method in class org.protege.editor.owl.ui.editor.OWLAnnotationEditor
 
canEdit(Object) - Method in class org.protege.editor.owl.ui.editor.OWLAnnotationPropertyEditor
 
canEdit(Object) - Method in class org.protege.editor.owl.ui.editor.OWLAnonymousIndividualAnnotationValueEditor
 
canEdit(Object) - Method in class org.protege.editor.owl.ui.editor.OWLClassDescriptionEditor
 
canEdit(Object) - Method in class org.protege.editor.owl.ui.editor.OWLClassExpressionSetEditor
 
canEdit(Object) - Method in class org.protege.editor.owl.ui.editor.OWLConstantEditor
 
canEdit(Object) - Method in class org.protege.editor.owl.ui.editor.OWLDataPropertyEditor
 
canEdit(Object) - Method in class org.protege.editor.owl.ui.editor.OWLDataPropertyRelationshipEditor
 
canEdit(Object) - Method in class org.protege.editor.owl.ui.editor.OWLDataPropertySetEditor
 
canEdit(Object) - Method in class org.protege.editor.owl.ui.editor.OWLDataRangeEditor
 
canEdit(Object) - Method in class org.protege.editor.owl.ui.editor.OWLGeneralAxiomEditor
 
canEdit(Object) - Method in class org.protege.editor.owl.ui.editor.OWLIndividualEditor
 
canEdit(Object) - Method in class org.protege.editor.owl.ui.editor.OWLIndividualSetEditor
 
canEdit(Object) - Method in interface org.protege.editor.owl.ui.editor.OWLObjectEditor
 
canEdit(Object) - Method in class org.protege.editor.owl.ui.editor.OWLObjectPropertyChainEditor
 
canEdit(Object) - Method in class org.protege.editor.owl.ui.editor.OWLObjectPropertyEditor
 
canEdit(Object) - Method in class org.protege.editor.owl.ui.editor.OWLObjectPropertyExpressionEditor
 
canEdit(Object) - Method in class org.protege.editor.owl.ui.editor.OWLObjectPropertyIndividualPairEditor
 
canEdit(Object) - Method in class org.protege.editor.owl.ui.editor.OWLObjectPropertySetEditor
 
canEdit(Object) - Method in class org.protege.editor.owl.ui.editor.OWLObjectPropertyTabbedSetEditor
 
canEdit(Object) - Method in class org.protege.editor.owl.ui.editor.OWLPropertySetEditor
 
canEdit(Object) - Method in class org.protege.editor.owl.ui.editor.SWRLRuleEditor
 
canGoBack() - Method in interface org.protege.editor.owl.model.selection.OWLSelectionHistoryManager
 
canGoBack() - Method in class org.protege.editor.owl.model.selection.OWLSelectionHistoryManagerImpl
 
canGoForward() - Method in interface org.protege.editor.owl.model.selection.OWLSelectionHistoryManager
 
canGoForward() - Method in class org.protege.editor.owl.model.selection.OWLSelectionHistoryManagerImpl
 
canLoad(URI) - Method in interface org.protege.editor.core.editorkit.EditorKitFactory
 
canLoad(URI) - Method in class org.protege.editor.owl.OWLEditorKitFactory
 
canPaste(List<OWLObject>) - Method in class org.protege.editor.owl.ui.framelist.OWLFrameList
 
canPaste(List<OWLObject>) - Method in interface org.protege.editor.owl.ui.view.Pasteable
 
canPerform(E) - Method in class org.protege.editor.owl.ui.action.AbstractOWLTreeAction
 
canPerform() - Method in class org.protege.editor.owl.ui.action.CopyAction
 
canPerform() - Method in class org.protege.editor.owl.ui.action.CreateNewChildAction
 
canPerform() - Method in class org.protege.editor.owl.ui.action.CreateNewObjectAction
 
canPerform() - Method in class org.protege.editor.owl.ui.action.CreateNewSiblingAction
 
canPerform() - Method in class org.protege.editor.owl.ui.action.CutAction
 
canPerform() - Method in class org.protege.editor.owl.ui.action.DeleteAction
 
canPerform() - Method in class org.protege.editor.owl.ui.action.FocusedComponentAction
 
canPerform(OWLEntity) - Method in interface org.protege.editor.owl.ui.action.OWLUIActionStrategy
 
canPerform() - Method in class org.protege.editor.owl.ui.action.PasteAction
 
canPerformAction() - Method in class org.protege.editor.owl.ui.framelist.OWLFrameList
 
canPerformDrag() - Method in class org.protege.editor.owl.ui.transfer.OWLObjectDragGestureListener
 
canRedo() - Method in interface org.protege.editor.owl.model.history.HistoryManager
 
canRedo() - Method in class org.protege.editor.owl.model.history.HistoryManagerImpl
 
canShowEntity(OWLEntity) - Method in class org.protege.editor.owl.ui.view.AbstractOWLSelectionViewComponent
 
canUndo() - Method in interface org.protege.editor.owl.model.history.HistoryManager
 
canUndo() - Method in class org.protege.editor.owl.model.history.HistoryManagerImpl
 
CARDI_NAME - Static variable in class uk.ac.man.cs.mig.coode.owlviz.ui.renderer.OWLClsNodeRenderer
 
CATALOG_BACKUP_PREFIX - Static variable in class org.protege.editor.owl.model.library.OntologyCatalogManager
 
CATALOG_NAME - Static variable in class org.protege.editor.owl.model.library.OntologyCatalogManager
 
CatalogEntryManager - Class in org.protege.editor.owl.model.library
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 20-Jul-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

A library contains a set of ontologies.

CatalogEntryManager() - Constructor for class org.protege.editor.owl.model.library.CatalogEntryManager
 
CatalogEntryManagerLoader - Class in org.protege.editor.owl.model.library
 
CatalogEntryManagerLoader() - Constructor for class org.protege.editor.owl.model.library.CatalogEntryManagerLoader
 
CatalogEntryManagerPlugin - Class in org.protege.editor.owl.model.library
 
CatalogEntryManagerPlugin(IExtension) - Constructor for class org.protege.editor.owl.model.library.CatalogEntryManagerPlugin
 
CATEGORY - Static variable in class org.protege.editor.core.ui.view.ViewComponentPluginJPFImpl
 
CHANGED_ANNOTATION_URIS - Static variable in class org.protege.editor.owl.model.selection.axioms.AnnotationAxiomsStrategy
 
CHANGED_AXIOM_TYPE - Static variable in class org.protege.editor.owl.model.selection.axioms.AxiomTypeStrategy
 
changeFontSize(int) - Method in class org.protege.editor.core.ui.workspace.Workspace
 
ChangeListenerMediator - Class in org.protege.editor.owl.ui.view
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 07-Oct-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

A helper class that manages change listeners.

ChangeListenerMediator() - Constructor for class org.protege.editor.owl.ui.view.ChangeListenerMediator
 
ChangeOntologyIRI - Class in org.protege.editor.owl.ui.action
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 07-Mar-2007

ChangeOntologyIRI() - Constructor for class org.protege.editor.owl.ui.action.ChangeOntologyIRI
 
check(String) - Method in class org.protege.editor.owl.ui.clsdescriptioneditor.OWLDataRangeChecker
 
check(String) - Method in interface org.protege.editor.owl.ui.clsdescriptioneditor.OWLExpressionChecker
 
CHECK_DELAY_KEY - Static variable in class org.protege.editor.owl.ui.clsdescriptioneditor.ExpressionEditorPreferences
 
checkAll(boolean) - Method in class org.protege.editor.core.ui.util.CheckTable
 
checkAll(boolean) - Method in class org.protege.editor.owl.ui.selector.OWLOntologySelectorPanel2
 
checkEditorResults(OWLObjectEditor<E>) - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSection
 
checkEditorResults(OWLObjectEditor<E>) - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSectionRow
 
checkEditorResults(OWLObjectEditor<Set<OWLClassExpression>>) - Method in class org.protege.editor.owl.ui.frame.cls.OWLDisjointClassesAxiomFrameSection
 
checkEditorResults(OWLObjectEditor<Set<OWLClassExpression>>) - Method in class org.protege.editor.owl.ui.frame.cls.OWLDisjointClassesAxiomFrameSectionRow
 
checkEditorResults(OWLObjectEditor<Set<OWLClassExpression>>) - Method in class org.protege.editor.owl.ui.frame.cls.OWLDisjointUnionAxiomFrameSection
 
checkEditorResults(OWLObjectEditor<Set<OWLClassExpression>>) - Method in class org.protege.editor.owl.ui.frame.cls.OWLDisjointUnionAxiomFrameSectionRow
 
checkEditorResults(OWLObjectEditor<OWLClassExpression>) - Method in class org.protege.editor.owl.ui.frame.cls.OWLEquivalentClassesAxiomFrameSection
 
checkEditorResults(OWLObjectEditor<OWLClassExpression>) - Method in class org.protege.editor.owl.ui.frame.cls.OWLEquivalentClassesAxiomFrameSectionRow
 
checkEditorResults(OWLObjectEditor<Set<OWLDataProperty>>) - Method in class org.protege.editor.owl.ui.frame.dataproperty.OWLDisjointDataPropertiesFrameSection
 
checkEditorResults(OWLObjectEditor<Set<OWLDataProperty>>) - Method in class org.protege.editor.owl.ui.frame.dataproperty.OWLDisjointDataPropertiesFrameSectionRow
 
checkEditorResults(OWLObjectEditor<OWLDataProperty>) - Method in class org.protege.editor.owl.ui.frame.dataproperty.OWLEquivalentDataPropertiesFrameSection
 
checkEditorResults(OWLObjectEditor<OWLDataProperty>) - Method in class org.protege.editor.owl.ui.frame.dataproperty.OWLEquivalentDataPropertiesFrameSectionRow
 
checkEditorResults(OWLObjectEditor<Set<OWLNamedIndividual>>) - Method in class org.protege.editor.owl.ui.frame.individual.OWLDifferentIndividualAxiomFrameSectionRow
 
checkEditorResults(OWLObjectEditor<Set<OWLNamedIndividual>>) - Method in class org.protege.editor.owl.ui.frame.individual.OWLDifferentIndividualsAxiomFrameSection
 
checkEditorResults(OWLObjectEditor<Set<OWLNamedIndividual>>) - Method in class org.protege.editor.owl.ui.frame.individual.OWLSameIndividualsAxiomFrameSection
 
checkEditorResults(OWLObjectEditor<Set<OWLNamedIndividual>>) - Method in class org.protege.editor.owl.ui.frame.individual.OWLSameIndividualsAxiomFrameSectionRow
 
checkEditorResults(OWLObjectEditor<Set<OWLObjectPropertyExpression>>) - Method in class org.protege.editor.owl.ui.frame.objectproperty.OWLDisjointObjectPropertiesAxiomFrameSectionRow
 
checkEditorResults(OWLObjectEditor<Set<OWLObjectPropertyExpression>>) - Method in class org.protege.editor.owl.ui.frame.objectproperty.OWLDisjointObjectPropertiesFrameSection
 
checkEditorResults(OWLObjectEditor<OWLObjectPropertyExpression>) - Method in class org.protege.editor.owl.ui.frame.objectproperty.OWLEquivalentObjectPropertiesAxiomFrameSection
 
checkEditorResults(OWLObjectEditor<OWLObjectPropertyExpression>) - Method in class org.protege.editor.owl.ui.frame.objectproperty.OWLEquivalentObjectPropertiesAxiomFrameSectionRow
 
checkEditorResults(OWLObjectEditor<E>) - Method in interface org.protege.editor.owl.ui.frame.OWLFrameObject
 
checkExpression() - Method in class org.protege.editor.owl.ui.clsdescriptioneditor.ExpressionEditor
 
checkForDownloads() - Method in class org.protege.editor.core.update.PluginManager
 
checkForUpdates() - Method in class org.protege.editor.core.update.PluginManager
 
checkForUpdatesUI() - Method in class org.protege.editor.core.update.PluginManager
 
checkImport() - Method in class org.protege.editor.owl.ui.ontology.imports.wizard.page.AnticipateOntologyIdPage
 
CheckList - Class in org.protege.editor.core.ui.util
Author: Matthew Horridge
The University Of Manchester
Information Management Group
Date: 22-Sep-2008

CheckList(JList) - Constructor for class org.protege.editor.core.ui.util.CheckList
 
checkList(Object, Class) - Method in class org.protege.editor.owl.ui.editor.AbstractOWLObjectEditor
 
CheckList.CheckListListener - Interface in org.protege.editor.core.ui.util
 
CheckPluginsAction - Class in org.protege.editor.core.ui.action
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Nov 6, 2008

CheckPluginsAction() - Constructor for class org.protege.editor.core.ui.action.CheckPluginsAction
 
CheckPluginsAction - Class in org.protege.editor.core.ui.action.start
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Nov 6, 2008

CheckPluginsAction() - Constructor for class org.protege.editor.core.ui.action.start.CheckPluginsAction
 
checkpoint() - Method in class org.protege.editor.owl.model.entity.IterativeAutoIDGenerator
 
checkpoint() - Method in class org.protege.editor.owl.model.entity.PseudoRandomAutoIDGenerator
 
checkpoint() - Method in interface org.protege.editor.owl.model.entity.Revertable
 
checkpoint() - Method in class org.protege.editor.owl.model.entity.UniqueIdGenerator
 
checkSet(Object, Class) - Method in class org.protege.editor.owl.ui.editor.AbstractOWLObjectEditor
 
checkSources() - Method in class org.protege.editor.owl.model.io.OntologySourcesManager
 
CheckTable<O> - Class in org.protege.editor.core.ui.util
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Jun 2, 2008

Implements a two column table where the left column is a list of checkboxes and the right is a list of objects of type O (provided by setData()).

CheckTable(String) - Constructor for class org.protege.editor.core.ui.util.CheckTable
 
CheckTableModel<O> - Class in org.protege.editor.core.ui.util
 
childAdded(GraphModelEvent) - Method in interface uk.ac.man.cs.mig.util.graph.event.GraphModelListener
 
childObjectAdded(VisualisedObjectManagerEvent) - Method in interface uk.ac.man.cs.mig.util.graph.event.VisualisedObjectManagerListener
 
childObjectRemoved(VisualisedObjectManagerEvent) - Method in interface uk.ac.man.cs.mig.util.graph.event.VisualisedObjectManagerListener
 
childRemoved(GraphModelEvent) - Method in interface uk.ac.man.cs.mig.util.graph.event.GraphModelListener
 
children() - Method in class org.protege.editor.owl.ui.tree.OWLObjectTreeNode
 
chooseFolder(Component, String) - Static method in class org.protege.editor.core.ui.util.UIUtil
 
chooseOSXFolder(Component, String) - Static method in class org.protege.editor.core.platform.apple.MacUIUtil
 
chooseOWLFile(String) - Method in class org.protege.editor.owl.ui.UIHelper
 
CLASS_ART_TYPE - Static variable in class org.protege.ontograf.common.ProtegeGraphModel
 
CLASS_COLOR_KEY - Static variable in class org.protege.editor.core.ProtegeProperties
 
CLASS_PARAM_NAME - Static variable in class org.protege.editor.core.plugin.PluginProperties
This is the name of the class that should be instantiated for a plugin, which is a "standard" parameter.
CLASS_VIEW_CATEGORY - Static variable in class org.protege.editor.core.ProtegeProperties
 
ClassCountMetric - Class in org.protege.editor.owl.ui.metrics
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 20-Feb-2007

ClassCountMetric() - Constructor for class org.protege.editor.owl.ui.metrics.ClassCountMetric
 
classifyAsynchronously(Set<InferenceType>) - Method in interface org.protege.editor.owl.model.inference.OWLReasonerManager
 
classifyAsynchronously(Set<InferenceType>) - Method in class org.protege.editor.owl.model.inference.OWLReasonerManagerImpl
Classifies the current active ontologies.
ClassRadiusDialog - Class in uk.ac.man.cs.mig.coode.owlviz.ui
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Feb 24, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

ClassRadiusDialog(Frame, boolean) - Constructor for class uk.ac.man.cs.mig.coode.owlviz.ui.ClassRadiusDialog
 
ClassRadiusDialogPage - Class in uk.ac.man.cs.mig.coode.owlviz.ui
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Feb 12, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

ClassRadiusDialogPage(boolean) - Constructor for class uk.ac.man.cs.mig.coode.owlviz.ui.ClassRadiusDialogPage
 
ClassReferencingAxiomsStrategy - Class in org.protege.editor.owl.model.selection.axioms
User: nickdrummond Date: May 20, 2008
ClassReferencingAxiomsStrategy() - Constructor for class org.protege.editor.owl.model.selection.axioms.ClassReferencingAxiomsStrategy
 
cleanNodeMap() - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultGraphGenerator
Removes any nodes in the nodeMap that represent objects that aren't in the list of objects held by the VisualisedObjectManager.
clear() - Method in class org.protege.editor.core.editorkit.RecentEditorKitManager
 
clear() - Method in class org.protege.editor.core.prefs.JavaBackedPreferencesImpl
 
clear() - Method in interface org.protege.editor.core.prefs.Preferences
 
clear() - Method in class org.protege.editor.core.ui.error.ErrorLog
 
clear() - Method in class org.protege.editor.owl.model.cache.OWLObjectRenderingCache
 
clear() - Method in class org.protege.editor.owl.ui.editor.AbstractOWLObjectEditor
 
clear() - Method in class org.protege.editor.owl.ui.editor.IRIFromEntityEditor
 
clear() - Method in class org.protege.editor.owl.ui.editor.IRITextEditor
 
clear() - Method in class org.protege.editor.owl.ui.editor.OWLAnonymousIndividualAnnotationValueEditor
 
clear() - Method in class org.protege.editor.owl.ui.editor.OWLConstantEditor
 
clear() - Method in interface org.protege.editor.owl.ui.editor.OWLObjectEditor
 
clear() - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSection
 
clear() - Method in class org.protege.editor.owl.ui.frame.annotationproperty.OWLAnnotationPropertyDomainFrameSection
 
clear() - Method in class org.protege.editor.owl.ui.frame.annotationproperty.OWLAnnotationPropertyRangeFrameSection
 
clear() - Method in class org.protege.editor.owl.ui.frame.annotationproperty.OWLSubAnnotationPropertyFrameSection
 
clear() - Method in class org.protege.editor.owl.ui.frame.AxiomListFrameSection
 
clear() - Method in class org.protege.editor.owl.ui.frame.cls.InheritedAnonymousClassesFrameSection
 
clear() - Method in class org.protege.editor.owl.ui.frame.cls.OWLClassAssertionAxiomMembersSection
 
clear() - Method in class org.protege.editor.owl.ui.frame.cls.OWLDisjointClassesAxiomFrameSection
 
clear() - Method in class org.protege.editor.owl.ui.frame.cls.OWLDisjointUnionAxiomFrameSection
 
clear() - Method in class org.protege.editor.owl.ui.frame.cls.OWLEquivalentClassesAxiomFrameSection
 
clear() - Method in class org.protege.editor.owl.ui.frame.cls.OWLKeySection
 
clear() - Method in class org.protege.editor.owl.ui.frame.cls.OWLSubClassAxiomFrameSection
 
clear() - Method in class org.protege.editor.owl.ui.frame.dataproperty.OWLDataPropertyRangeFrameSection
 
clear() - Method in class org.protege.editor.owl.ui.frame.dataproperty.OWLDisjointDataPropertiesFrameSection
 
clear() - Method in class org.protege.editor.owl.ui.frame.dataproperty.OWLEquivalentDataPropertiesFrameSection
 
clear() - Method in class org.protege.editor.owl.ui.frame.dataproperty.OWLSubDataPropertyAxiomSuperPropertyFrameSection
 
clear() - Method in class org.protege.editor.owl.ui.frame.datatype.OWLDatatypeDefinitionFrameSection
 
clear() - Method in class org.protege.editor.owl.ui.frame.individual.OWLClassAssertionAxiomTypeFrameSection
 
clear() - Method in class org.protege.editor.owl.ui.frame.individual.OWLDataPropertyAssertionAxiomFrameSection
 
clear() - Method in class org.protege.editor.owl.ui.frame.individual.OWLDifferentIndividualsAxiomFrameSection
 
clear() - Method in class org.protege.editor.owl.ui.frame.individual.OWLNegativeDataPropertyAssertionFrameSection
 
clear() - Method in class org.protege.editor.owl.ui.frame.individual.OWLNegativeObjectPropertyAssertionFrameSection
 
clear() - Method in class org.protege.editor.owl.ui.frame.individual.OWLObjectPropertyAssertionAxiomFrameSection
 
clear() - Method in class org.protege.editor.owl.ui.frame.individual.OWLSameIndividualsAxiomFrameSection
 
clear() - Method in class org.protege.editor.owl.ui.frame.InferredAxiomsFrameSection
 
clear() - Method in class org.protege.editor.owl.ui.frame.objectproperty.OWLDisjointObjectPropertiesFrameSection
 
clear() - Method in class org.protege.editor.owl.ui.frame.objectproperty.OWLEquivalentObjectPropertiesAxiomFrameSection
 
clear() - Method in class org.protege.editor.owl.ui.frame.objectproperty.OWLInverseObjectPropertiesAxiomFrameSection
 
clear() - Method in class org.protege.editor.owl.ui.frame.objectproperty.OWLObjectPropertyRangeFrameSection
 
clear() - Method in class org.protege.editor.owl.ui.frame.objectproperty.OWLPropertyChainAxiomFrameSection
 
clear() - Method in class org.protege.editor.owl.ui.frame.objectproperty.OWLSubObjectPropertyAxiomSuperPropertyFrameSection
 
clear() - Method in class org.protege.editor.owl.ui.frame.OWLAnnotationFrameSection
 
clear() - Method in class org.protege.editor.owl.ui.frame.OWLGeneralClassAxiomsFrameSection
 
clear() - Method in class org.protege.editor.owl.ui.frame.property.AbstractPropertyDomainFrameSection
 
clear() - Method in class org.protege.editor.owl.ui.frame.SWRLRulesFrameSection
 
clear() - Method in class org.protege.ontograf.common.GraphController
 
clearExplanationFactories() - Method in class org.protege.editor.core.ui.error.ErrorExplainer
 
clearImports() - Method in class org.protege.editor.owl.ui.ontology.imports.wizard.OntologyImportWizard
 
clearLastSelectedEntity(OWLEntity) - Method in interface org.protege.editor.owl.model.selection.OWLSelectionModel
If any of the last selected entities are equal to the specified entity then the selection is cleared.
clearLastSelectedEntity(OWLEntity) - Method in class org.protege.editor.owl.model.selection.OWLSelectionModelImpl
 
clearListeners() - Method in class org.protege.editor.core.ui.error.ErrorLog
 
clearListeners() - Method in class org.protege.editor.owl.ui.library.NewEntryPanel
 
clearListeners() - Method in class org.protege.editor.owl.ui.view.ChangeListenerMediator
Removes all change listeners
clearMaps() - Method in class uk.ac.man.cs.mig.coode.owlviz.model.OWLVizAxiomGraphModel
Resets the child2ParentMap, the parent2ChildMap, the nodes Set an the edge map
clearSections() - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrame
 
clearSelection() - Method in class org.protege.editor.owl.ui.selector.AbstractSelectorPanel
 
close() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizView
 
CLOSE_PROGRESS_TIMEOUT - Static variable in class org.protege.editor.owl.ui.inference.ReasonerProgressUI
 
CloseAction - Class in org.protege.editor.core.ui.action
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 13-Jul-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

CloseAction() - Constructor for class org.protege.editor.core.ui.action.CloseAction
 
closeGraph() - Method in class uk.ac.man.cs.mig.util.graph.outputrenderer.impl.DotOutputGraphRenderer
 
CloseOntologiesAction - Class in org.protege.editor.owl.ui.action
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Sep 30, 2008

CloseOntologiesAction() - Constructor for class org.protege.editor.owl.ui.action.CloseOntologiesAction
 
closeView() - Method in class org.protege.editor.core.ui.view.View
 
closeView(View) - Method in class org.protege.editor.core.ui.view.ViewContainer
 
ClosureAxiomFactory - Class in org.protege.editor.owl.model.util
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 14-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

ClosureAxiomFactory(OWLObjectProperty, OWLDataFactory, Set<OWLOntology>) - Constructor for class org.protege.editor.owl.model.util.ClosureAxiomFactory
 
CoerceDataPropertyValuesIntoPropertyRangeAction - Class in org.protege.editor.owl.ui.action
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 13-Aug-2007

CoerceDataPropertyValuesIntoPropertyRangeAction() - Constructor for class org.protege.editor.owl.ui.action.CoerceDataPropertyValuesIntoPropertyRangeAction
 
collapseNode(GraphNode) - Method in class org.protege.ontograf.common.ProtegeGraphModel
Collapses the given graphNode.
collapseSplitPane(ViewContainer.TabViewContainerSplitPane) - Method in class org.protege.editor.core.ui.view.ViewContainer
 
collapseTabViewContainer(ViewContainer) - Method in class org.protege.editor.core.ui.view.ViewContainer
 
column - Variable in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.SimpleCharStream
 
COMMA - Static variable in interface uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.DotParserConstants
 
commit() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.byprofile.ProfileSelectorPanel
 
commit() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.byreference.SelectSignaturePanel
 
commit() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.bytype.AxiomTypeSelectorPanel
 
commit() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.common.SignatureDependentSelectionPreviewPanel
 
commit() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.MoveAxiomsKitConfigurationPanel
 
commit() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.SelectAxiomsPanel
 
commitPrefixes() - Method in class org.protege.editor.owl.ui.prefix.PrefixMapperTableModel
 
CommonProtegeProperties - Class in org.protege.common
 
CommonProtegeProperties() - Constructor for class org.protege.common.CommonProtegeProperties
 
compare(ToolBarActionPlugin, ToolBarActionPlugin) - Method in class org.protege.editor.core.ui.action.ToolBarActionComparator
 
compare(ProtegeOWLReasonerInfo, ProtegeOWLReasonerInfo) - Method in class org.protege.editor.owl.model.inference.ReasonerInfoComparator
 
compare(OWLClassExpression, OWLClassExpression) - Method in class org.protege.editor.owl.ui.OWLClassExpressionComparator
 
compare(E, E) - Method in class org.protege.editor.owl.ui.OWLObjectComparator
 
compare(E, E) - Method in class org.protege.editor.owl.ui.OWLObjectComparatorAdapter
 
compare(E, E) - Method in class org.protege.editor.owl.ui.OWLObjectRenderingComparator
 
compare(OWLOntology, OWLOntology) - Method in class org.protege.editor.owl.ui.renderer.prefix.ActiveOntologyComparator
 
compareTo(AltStartupActionPlugin) - Method in class org.protege.editor.core.ui.action.start.AltStartupActionPlugin
 
compareTo(RendererPlugin) - Method in class org.protege.editor.owl.ui.renderer.plugin.RendererPlugin
 
COMPLEMENT_NAME - Static variable in class uk.ac.man.cs.mig.coode.owlviz.ui.renderer.OWLClsNodeRenderer
 
COMPONENT_PADDING - Static variable in interface org.protege.editor.core.ui.util.UIConstants
 
ComponentFactory - Class in org.protege.editor.core.ui.util
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Mar 22, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

ComponentFactory() - Constructor for class org.protege.editor.core.ui.util.ComponentFactory
 
CONDITIONS_EQUIVALENT_CLASSES_HEADER - Static variable in class org.protege.editor.owl.ProtegeOWLProperties
 
CONDITIONS_SUPERCLASSES_HEADER - Static variable in class org.protege.editor.owl.ProtegeOWLProperties
 
ConditionsPopupPage - Class in uk.ac.man.cs.mig.coode.owlviz.ui.popup
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Sep 23, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

ConditionsPopupPage(OWLEditorKit) - Constructor for class uk.ac.man.cs.mig.coode.owlviz.ui.popup.ConditionsPopupPage
 
ConfigTooltipsAction - Class in org.protege.ontograf.actions
 
ConfigTooltipsAction(Component, PCanvas) - Constructor for class org.protege.ontograf.actions.ConfigTooltipsAction
 
ConfigurableOWLVizView - Interface in uk.ac.man.cs.mig.coode.owlviz.ui
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Dec 10, 2008

Hack required to maintain OWLPropViz compatibility

configure(RendererPlugin) - Method in class org.protege.editor.owl.ui.renderer.menu.AbstractByRendererMenu
 
configure(RendererPlugin) - Method in class org.protege.editor.owl.ui.renderer.menu.RenderById
 
configure(RendererPlugin) - Method in class org.protege.editor.owl.ui.renderer.menu.RenderByLabel
 
configure(OWLAnnotationProperty) - Method in class org.protege.editor.owl.ui.renderer.menu.RenderByProperty
 
configure(RendererPlugin) - Method in class org.protege.editor.owl.ui.renderer.menu.RenderByQualifiedName
 
configure(OWLEditorKit) - Method in class org.protege.editor.owl.ui.renderer.OWLEntityAnnotationValueRenderer
 
configure(OWLEditorKit) - Method in class org.protege.editor.owl.ui.renderer.OWLEntityQNameRenderer
 
configure(OWLEditorKit) - Method in class org.protege.editor.owl.ui.renderer.OWLEntityRendererImpl
 
configure(OWLEditorKit) - Method in interface org.protege.editor.owl.ui.renderer.OWLModelManagerEntityRenderer
 
configureEditorKit(EditorKit) - Method in interface org.protege.editor.core.OntologyRepositoryEntry
If this ontology gets loaded, this method will be called before loading starts in order to provided the opportunity to configure an editorkit (e.g.
ConfigureReasonerAction - Class in org.protege.editor.owl.ui.inference
 
ConfigureReasonerAction() - Constructor for class org.protege.editor.owl.ui.inference.ConfigureReasonerAction
 
ConfigureRenderer - Class in org.protege.editor.owl.ui.renderer.menu
 
ConfigureRenderer() - Constructor for class org.protege.editor.owl.ui.renderer.menu.ConfigureRenderer
 
CONTAINS - Static variable in class org.protege.ontograf.common.GraphController
 
contains(Object) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.AbstractOWLClassGraphModel
 
contains(Object) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.OWLOntologyImportsGraphModel
 
contains(Object) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.OWLVizAxiomGraphModel
 
contains(Node) - Method in interface uk.ac.man.cs.mig.util.graph.graph.Graph
Determines if the Graph isShown the specified Node.
contains(Edge) - Method in interface uk.ac.man.cs.mig.util.graph.graph.Graph
Determines if the Graph isShown the specified Edge.
contains(Node) - Method in class uk.ac.man.cs.mig.util.graph.graph.impl.DefaultGraph
Determines if the Graph isShown the specified Node.
contains(Edge) - Method in class uk.ac.man.cs.mig.util.graph.graph.impl.DefaultGraph
Determines if the Graph isShown the specified Edge.
contains(Object) - Method in interface uk.ac.man.cs.mig.util.graph.model.GraphModel
Tests whether or not the specified object is contained within the graph model.
contains(Object) - Method in class uk.ac.man.cs.mig.util.graph.model.impl.DefaultGraphModel
Tests whether or not the specified object is contained within the graph model.
containsNamespace(String) - Method in interface org.protege.editor.owl.model.namespace.NamespaceManager
Determines whether or not the namespace map contains the specified namespace.
containsNamespace(String) - Method in class org.protege.editor.owl.model.namespace.NamespaceManagerImpl
 
containsReference(OWLOntology, P) - Method in class org.protege.editor.owl.model.hierarchy.AbstractOWLPropertyHierarchyProvider
 
containsReference(P) - Method in class org.protege.editor.owl.model.hierarchy.AbstractOWLPropertyHierarchyProvider
 
containsReference(OWLClass) - Method in class org.protege.editor.owl.model.hierarchy.AssertedClassHierarchyProvider
 
containsReference(OWLClass) - Method in class org.protege.editor.owl.model.hierarchy.AssertedSuperClassHierarchyProvider
 
containsReference(OWLClass) - Method in class org.protege.editor.owl.model.hierarchy.cls.InferredOWLClassHierarchyProvider
 
containsReference(OWLClass) - Method in class org.protege.editor.owl.model.hierarchy.cls.InferredSuperClassHierarchyProvider
 
containsReference(OWLObject) - Method in class org.protege.editor.owl.model.hierarchy.IndividualsByInferredTypeHierarchyProvider
 
containsReference(OWLObject) - Method in class org.protege.editor.owl.model.hierarchy.IndividualsByTypeHierarchyProvider
 
containsReference(OWLAnnotationProperty) - Method in class org.protege.editor.owl.model.hierarchy.OWLAnnotationPropertyHierarchyProvider
 
containsReference(OWLOntology, OWLDataProperty) - Method in class org.protege.editor.owl.model.hierarchy.OWLDataPropertyHierarchyProvider
 
containsReference(N) - Method in interface org.protege.editor.owl.model.hierarchy.OWLObjectHierarchyProvider
 
containsReference(OWLOntology, OWLObjectProperty) - Method in class org.protege.editor.owl.model.hierarchy.OWLObjectPropertyHierarchyProvider
 
containsReference(OWLOntology) - Method in class org.protege.editor.owl.model.hierarchy.OWLOntologyHierarchyProvider
 
containsTab(String) - Method in class org.protege.editor.core.ui.workspace.TabbedWorkspace
 
containsView(String) - Method in class org.protege.editor.core.ui.view.ViewHolder
Tests to see whether the holder contains a view with a particular id.
containsView(String) - Method in class org.protege.editor.core.ui.view.ViewsPane
 
Controller - Interface in uk.ac.man.cs.mig.util.graph.controller
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Jan 9, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

A controller, which ties together the various models and views.
controller - Variable in class uk.ac.man.cs.mig.util.graph.ui.GraphView
 
ConvertAssertionsOnPunsToAnnotations - Class in org.protege.editor.owl.ui.action
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 23-Jul-2007

ConvertAssertionsOnPunsToAnnotations() - Constructor for class org.protege.editor.owl.ui.action.ConvertAssertionsOnPunsToAnnotations
 
ConvertEntityURIsToIdentifierPattern - Class in org.protege.editor.owl.model.refactor.ontology
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 30-Aug-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

ConvertEntityURIsToIdentifierPattern(OWLModelManager, Set<OWLOntology>) - Constructor for class org.protege.editor.owl.model.refactor.ontology.ConvertEntityURIsToIdentifierPattern
 
ConvertEntityURIsToLabels - Class in org.protege.editor.owl.ui.action
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 30-Aug-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

ConvertEntityURIsToLabels() - Constructor for class org.protege.editor.owl.ui.action.ConvertEntityURIsToLabels
 
convertException(ParserException) - Static method in class org.protege.editor.owl.model.parser.ParserUtil
 
ConvertMinOneToSomeValuesFromAction - Class in org.protege.editor.owl.ui.action
Author: Nick Drummond
The University Of Manchester
BioHealth Informatics Group
Date: May 19, 2008
ConvertMinOneToSomeValuesFromAction() - Constructor for class org.protege.editor.owl.ui.action.ConvertMinOneToSomeValuesFromAction
 
ConvertToDefinedClassAction - Class in org.protege.editor.owl.ui.action
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 15-Feb-2007

ConvertToDefinedClassAction() - Constructor for class org.protege.editor.owl.ui.action.ConvertToDefinedClassAction
 
ConvertToPrimitiveClassAction - Class in org.protege.editor.owl.ui.action
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 24-Aug-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

ConvertToPrimitiveClassAction() - Constructor for class org.protege.editor.owl.ui.action.ConvertToPrimitiveClassAction
 
Copyable - Interface in org.protege.editor.owl.ui.view
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 07-Oct-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

Components that support the copying of OWLObjects should implement this interface, so that they will work with the copy action on the edit menu.

CopyAction - Class in org.protege.editor.owl.ui.action
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 07-Oct-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

CopyAction() - Constructor for class org.protege.editor.owl.ui.action.CopyAction
 
copyFile(File, File) - Static method in class org.protege.editor.core.FileUtils
Copies a file to the specified location.
copyFileToDirectory(File, File) - Static method in class org.protege.editor.core.FileUtils
Copies a file to the specified directory.
CopyOptionPanel - Class in org.protege.editor.owl.ui.ontology.imports.missing
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 17-Oct-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

CopyOptionPanel(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.ontology.imports.missing.CopyOptionPanel
 
CountingOWLObjectTreeCellRenderer<N extends org.semanticweb.owlapi.model.OWLObject> - Class in org.protege.editor.owl.ui.tree
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Jul 27, 2009

CountingOWLObjectTreeCellRenderer(OWLEditorKit, OWLObjectTree<N>) - Constructor for class org.protege.editor.owl.ui.tree.CountingOWLObjectTreeCellRenderer
 
CoveringAxiomFactory - Class in org.protege.editor.owl.model.util
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 03-Jul-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

CoveringAxiomFactory(OWLDataFactory, OWLObjectHierarchyProvider<OWLClass>) - Constructor for class org.protege.editor.owl.model.util.CoveringAxiomFactory
 
createAndEditRow() - Method in class org.protege.editor.owl.ui.prefix.PrefixMapperTable
 
createAndSetupNewEditorKit(EditorKitFactoryPlugin) - Method in class org.protege.editor.core.ProtegeManager
Creates and sets up a new (probably empty) .
createAnnotationPropertySelector() - Method in class org.protege.editor.owl.ui.editor.OWLAnnotationEditor
 
createAnonymousClass(OWLOntology, OWLClassExpression) - Method in class org.protege.editor.owl.model.classexpression.anonymouscls.AnonymousDefinedClassManager
 
createAntialiasedOptionPanel() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.exportwizard.SelectFormatPage
Creates a panel that provides the option to decide whether the export should be antialiased or not.
createArc(OWLEntity, OWLEntity, String) - Method in class org.protege.ontograf.common.ProtegeGraphModel
Creates a GraphArc with the given parameters without actually adding the GraphNodes or GraphArc to the model.
createArc(OWLEntity, OWLEntity, String, Icon) - Method in class org.protege.ontograf.common.ProtegeGraphModel
 
createArc(GraphNode, GraphNode, String, Icon) - Method in class org.protege.ontograf.common.ProtegeGraphModel
Creates a GraphArc with the given parameters without actually adding the GraphNodes or GraphArc to the model.
createAxiom(E) - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSection
 
createAxiom(E) - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSectionRow
 
createAxiom(IRI) - Method in class org.protege.editor.owl.ui.frame.annotationproperty.OWLAnnotationPropertyDomainFrameSection
 
createAxiom(IRI) - Method in class org.protege.editor.owl.ui.frame.annotationproperty.OWLAnnotationPropertyDomainFrameSectionRow
 
createAxiom(IRI) - Method in class org.protege.editor.owl.ui.frame.annotationproperty.OWLAnnotationPropertyRangeFrameSection
 
createAxiom(IRI) - Method in class org.protege.editor.owl.ui.frame.annotationproperty.OWLAnnotationPropertyRangeFrameSectionRow
 
createAxiom(OWLAnnotationProperty) - Method in class org.protege.editor.owl.ui.frame.annotationproperty.OWLSubAnnotationPropertyFrameSection
 
createAxiom(OWLAnnotationProperty) - Method in class org.protege.editor.owl.ui.frame.annotationproperty.OWLSubAnnotationPropertyFrameSectionRow
 
createAxiom(OWLAxiom) - Method in class org.protege.editor.owl.ui.frame.AxiomListFrameSection
 
createAxiom(OWLAxiom) - Method in class org.protege.editor.owl.ui.frame.AxiomListFrameSectionRow
 
createAxiom(OWLClassExpression) - Method in class org.protege.editor.owl.ui.frame.cls.InheritedAnonymousClassesFrameSection
 
createAxiom(OWLClassExpression) - Method in class org.protege.editor.owl.ui.frame.cls.InheritedAnonymousClassesFrameSectionRow
 
createAxiom(OWLNamedIndividual) - Method in class org.protege.editor.owl.ui.frame.cls.OWLClassAssertionAxiomMembersSection
 
createAxiom(OWLNamedIndividual) - Method in class org.protege.editor.owl.ui.frame.cls.OWLClassAssertionAxiomMembersSectionRow
 
createAxiom(Set<OWLClassExpression>) - Method in class org.protege.editor.owl.ui.frame.cls.OWLDisjointClassesAxiomFrameSection
 
createAxiom(Set<OWLClassExpression>) - Method in class org.protege.editor.owl.ui.frame.cls.OWLDisjointClassesAxiomFrameSectionRow
 
createAxiom(Set<OWLClassExpression>) - Method in class org.protege.editor.owl.ui.frame.cls.OWLDisjointUnionAxiomFrameSection
 
createAxiom(Set<OWLClassExpression>) - Method in class org.protege.editor.owl.ui.frame.cls.OWLDisjointUnionAxiomFrameSectionRow
 
createAxiom(OWLClassExpression) - Method in class org.protege.editor.owl.ui.frame.cls.OWLEquivalentClassesAxiomFrameSection
 
createAxiom(OWLClassExpression) - Method in class org.protege.editor.owl.ui.frame.cls.OWLEquivalentClassesAxiomFrameSectionRow
 
createAxiom(Set<OWLPropertyExpression>) - Method in class org.protege.editor.owl.ui.frame.cls.OWLKeyAxiomFrameSectionRow
 
createAxiom(Set<OWLPropertyExpression>) - Method in class org.protege.editor.owl.ui.frame.cls.OWLKeySection
 
createAxiom(OWLClassExpression) - Method in class org.protege.editor.owl.ui.frame.cls.OWLSubClassAxiomFrameSection
 
createAxiom(OWLClassExpression) - Method in class org.protege.editor.owl.ui.frame.cls.OWLSubClassAxiomFrameSectionRow
 
createAxiom(OWLClassExpression) - Method in class org.protege.editor.owl.ui.frame.dataproperty.OWLDataPropertyDomainFrameSection
 
createAxiom(OWLClassExpression) - Method in class org.protege.editor.owl.ui.frame.dataproperty.OWLDataPropertyDomainFrameSectionRow
 
createAxiom(OWLDataRange) - Method in class org.protege.editor.owl.ui.frame.dataproperty.OWLDataPropertyRangeFrameSection
 
createAxiom(OWLDataRange) - Method in class org.protege.editor.owl.ui.frame.dataproperty.OWLDataPropertyRangeFrameSectionRow
 
createAxiom(Set<OWLDataProperty>) - Method in class org.protege.editor.owl.ui.frame.dataproperty.OWLDisjointDataPropertiesFrameSection
 
createAxiom(Set<OWLDataProperty>) - Method in class org.protege.editor.owl.ui.frame.dataproperty.OWLDisjointDataPropertiesFrameSectionRow
 
createAxiom(OWLDataProperty) - Method in class org.protege.editor.owl.ui.frame.dataproperty.OWLEquivalentDataPropertiesFrameSection
 
createAxiom(OWLDataProperty) - Method in class org.protege.editor.owl.ui.frame.dataproperty.OWLEquivalentDataPropertiesFrameSectionRow
 
createAxiom(OWLDataProperty) - Method in class org.protege.editor.owl.ui.frame.dataproperty.OWLSubDataPropertyAxiomSuperPropertyFrameSection
 
createAxiom(OWLDataProperty) - Method in class org.protege.editor.owl.ui.frame.dataproperty.OWLSubDataPropertyAxiomSuperPropertyFrameSectionRow
 
createAxiom(OWLDataRange) - Method in class org.protege.editor.owl.ui.frame.datatype.OWLDatatypeDefinitionFrameSection
 
createAxiom(OWLDataRange) - Method in class org.protege.editor.owl.ui.frame.datatype.OWLDatatypeDefinitionFrameSectionRow
 
createAxiom(OWLClassExpression) - Method in class org.protege.editor.owl.ui.frame.individual.OWLClassAssertionAxiomTypeFrameSection
 
createAxiom(OWLClassExpression) - Method in class org.protege.editor.owl.ui.frame.individual.OWLClassAssertionAxiomTypeFrameSectionRow
 
createAxiom(OWLDataPropertyConstantPair) - Method in class org.protege.editor.owl.ui.frame.individual.OWLDataPropertyAssertionAxiomFrameSection
 
createAxiom(OWLDataPropertyConstantPair) - Method in class org.protege.editor.owl.ui.frame.individual.OWLDataPropertyAssertionAxiomFrameSectionRow
 
createAxiom(Set<OWLNamedIndividual>) - Method in class org.protege.editor.owl.ui.frame.individual.OWLDifferentIndividualAxiomFrameSectionRow
 
createAxiom(Set<OWLNamedIndividual>) - Method in class org.protege.editor.owl.ui.frame.individual.OWLDifferentIndividualsAxiomFrameSection
 
createAxiom(OWLDataPropertyConstantPair) - Method in class org.protege.editor.owl.ui.frame.individual.OWLNegativeDataPropertyAssertionFrameSection
 
createAxiom(OWLDataPropertyConstantPair) - Method in class org.protege.editor.owl.ui.frame.individual.OWLNegativeDataPropertyAssertionFrameSectionRow
 
createAxiom(OWLObjectPropertyIndividualPair) - Method in class org.protege.editor.owl.ui.frame.individual.OWLNegativeObjectPropertyAssertionFrameSection
 
createAxiom(OWLObjectPropertyIndividualPair) - Method in class org.protege.editor.owl.ui.frame.individual.OWLNegativeObjectPropertyAssertionFrameSectionRow
 
createAxiom(OWLObjectPropertyIndividualPair) - Method in class org.protege.editor.owl.ui.frame.individual.OWLObjectPropertyAssertionAxiomFrameSection
 
createAxiom(OWLObjectPropertyIndividualPair) - Method in class org.protege.editor.owl.ui.frame.individual.OWLObjectPropertyAssertionAxiomFrameSectionRow
 
createAxiom(Set<OWLNamedIndividual>) - Method in class org.protege.editor.owl.ui.frame.individual.OWLSameIndividualsAxiomFrameSection
 
createAxiom(Set<OWLNamedIndividual>) - Method in class org.protege.editor.owl.ui.frame.individual.OWLSameIndividualsAxiomFrameSectionRow
 
createAxiom(OWLAxiom) - Method in class org.protege.editor.owl.ui.frame.InferredAxiomsFrameSection
 
createAxiom(OWLAxiom) - Method in class org.protege.editor.owl.ui.frame.InferredAxiomsFrameSectionRow
 
createAxiom(Set<OWLObjectPropertyExpression>) - Method in class org.protege.editor.owl.ui.frame.objectproperty.OWLDisjointObjectPropertiesAxiomFrameSectionRow
 
createAxiom(Set<OWLObjectPropertyExpression>) - Method in class org.protege.editor.owl.ui.frame.objectproperty.OWLDisjointObjectPropertiesFrameSection
 
createAxiom(OWLObjectPropertyExpression) - Method in class org.protege.editor.owl.ui.frame.objectproperty.OWLEquivalentObjectPropertiesAxiomFrameSection
 
createAxiom(OWLObjectPropertyExpression) - Method in class org.protege.editor.owl.ui.frame.objectproperty.OWLEquivalentObjectPropertiesAxiomFrameSectionRow
 
createAxiom(OWLObjectProperty) - Method in class org.protege.editor.owl.ui.frame.objectproperty.OWLInverseObjectPropertiesAxiomFrameSection
 
createAxiom(OWLObjectProperty) - Method in class org.protege.editor.owl.ui.frame.objectproperty.OWLInverseObjectPropertiesAxiomFrameSectionRow
 
createAxiom(OWLClassExpression) - Method in class org.protege.editor.owl.ui.frame.objectproperty.OWLObjectPropertyDomainFrameSection
 
createAxiom(OWLClassExpression) - Method in class org.protege.editor.owl.ui.frame.objectproperty.OWLObjectPropertyDomainFrameSectionRow
 
createAxiom(OWLClassExpression) - Method in class org.protege.editor.owl.ui.frame.objectproperty.OWLObjectPropertyRangeFrameSection
 
createAxiom(OWLClassExpression) - Method in class org.protege.editor.owl.ui.frame.objectproperty.OWLObjectPropertyRangeFrameSectionRow
 
createAxiom(List<OWLObjectPropertyExpression>) - Method in class org.protege.editor.owl.ui.frame.objectproperty.OWLPropertyChainAxiomFrameSection
 
createAxiom(List<OWLObjectPropertyExpression>) - Method in class org.protege.editor.owl.ui.frame.objectproperty.OWLPropertyChainAxiomFrameSectionRow
 
createAxiom(OWLObjectPropertyExpression) - Method in class org.protege.editor.owl.ui.frame.objectproperty.OWLSubObjectPropertyAxiomSuperPropertyFrameSection
 
createAxiom(OWLObjectPropertyExpression) - Method in class org.protege.editor.owl.ui.frame.objectproperty.OWLSubObjectPropertyAxiomSuperPropertyFrameSectionRow
 
createAxiom(OWLAnnotation) - Method in class org.protege.editor.owl.ui.frame.OWLAnnotationFrameSection
 
createAxiom(OWLAnnotation) - Method in class org.protege.editor.owl.ui.frame.OWLAnnotationsFrameSectionRow
 
createAxiom(OWLClassAxiom) - Method in class org.protege.editor.owl.ui.frame.OWLGeneralClassAxiomFrameSectionRow
 
createAxiom(OWLClassAxiom) - Method in class org.protege.editor.owl.ui.frame.OWLGeneralClassAxiomsFrameSection
 
createAxiom(SWRLRule) - Method in class org.protege.editor.owl.ui.frame.SWRLRuleFrameSectionRow
 
createAxiom(SWRLRule) - Method in class org.protege.editor.owl.ui.frame.SWRLRulesFrameSection
 
createAxioms(OWLOntologyManager, OWLReasoner) - Method in class org.protege.editor.owl.ui.action.export.inferred.MonitoredInferredAxiomGenerator
 
createChild(Set<E>, E) - Method in class org.protege.editor.owl.ui.action.OWLObjectHierarchyCreator
 
createChildEntity() - Method in class org.protege.editor.owl.ui.action.OWLObjectHierarchyCreator
 
CreateClassHierarchyAction - Class in org.protege.editor.owl.ui.action
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 17-Jul-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

CreateClassHierarchyAction() - Constructor for class org.protege.editor.owl.ui.action.CreateClassHierarchyAction
 
CreateClassHierarchyWizard - Class in org.protege.editor.owl.ui.hierarchy.creation
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 17-Jul-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

CreateClassHierarchyWizard(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.hierarchy.creation.CreateClassHierarchyWizard
 
CreateClosureAxiomAction - Class in org.protege.editor.owl.ui.framelist
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Nov 24, 2008

CreateClosureAxiomAction() - Constructor for class org.protege.editor.owl.ui.framelist.CreateClosureAxiomAction
 
createComponent(Map<String, String>) - Method in class org.protege.editor.core.ui.view.ViewComponentFactory
 
createComponentLabel(String) - Method in class org.protege.editor.core.ui.preferences.node.PreferenceNodePanel
 
createConstant() - Method in class org.protege.editor.owl.ui.UIHelper
 
createCustomizedImportsComponent() - Method in class org.protege.editor.owl.ui.ontology.imports.wizard.page.OntologyImportPage
 
createCustomTab(String) - Method in class org.protege.editor.core.ui.workspace.CustomWorkspaceTabsManager.CustomTabPlugin
 
createCustomTab(String) - Method in class org.protege.editor.owl.model.OWLCustomWorkspaceTabsManager.CustomOWLTabPlugin
 
createDefaultColumnsFromModel() - Method in class org.protege.editor.core.ui.util.CheckTable
 
createDefaultDivider() - Method in class org.protege.editor.core.ui.split.ViewSplitPaneUI
Creates the default divider.
CreateDefinedClassPanel - Class in org.protege.editor.owl.ui
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Nov 24, 2008

CreateDefinedClassPanel(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.CreateDefinedClassPanel
 
createEdge(Node, Node, int) - Method in interface uk.ac.man.cs.mig.util.graph.factory.EdgeFactory
Creates an Edge
createEdge(Node, Node, int) - Method in class uk.ac.man.cs.mig.util.graph.factory.impl.DefaultEdgeFactory
Creates an Edge
createEditorKit() - Method in interface org.protege.editor.core.editorkit.EditorKitFactory
 
createEditorKit() - Method in class org.protege.editor.owl.OWLEditorKitFactory
 
createEditors() - Method in class org.protege.editor.owl.ui.editor.OWLAnnotationEditor
 
CreateEmptyOntologyAction - Class in org.protege.editor.owl.ui.action
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 21-May-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

CreateEmptyOntologyAction() - Constructor for class org.protege.editor.owl.ui.action.CreateEmptyOntologyAction
 
createEntity() - Method in class org.protege.editor.owl.ui.action.OWLObjectHierarchyCreator
 
createExceptionComponent(String, Throwable, IExtension) - Static method in class org.protege.editor.core.ui.util.ComponentFactory
 
createExplanation(T) - Method in interface org.protege.editor.core.ui.error.ErrorExplainer.ErrorExplanationFactory
 
createFillerSelectorPanel() - Method in class org.protege.editor.owl.ui.editor.AbstractRestrictionCreatorPanel
 
createFillerSelectorPanel() - Method in class org.protege.editor.owl.ui.editor.OWLDataRestrictionCreatorPanel
 
createFillerSelectorPanel() - Method in class org.protege.editor.owl.ui.editor.OWLObjectRestrictionCreatorPanel
 
createFormatComboPanel() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.exportwizard.SelectFormatPage
Creates a panel that contains a combo box with the available export formats in it, and a label, which prompts the user to select a format.
createFrameSectionRow(OWLDataPropertyDomainAxiom, OWLOntology) - Method in class org.protege.editor.owl.ui.frame.dataproperty.OWLDataPropertyDomainFrameSection
 
createFrameSectionRow(OWLObjectPropertyDomainAxiom, OWLOntology) - Method in class org.protege.editor.owl.ui.frame.objectproperty.OWLObjectPropertyDomainFrameSection
 
createFrameSectionRow(A, OWLOntology) - Method in class org.protege.editor.owl.ui.frame.property.AbstractPropertyDomainFrameSection
 
createGraph() - Method in interface uk.ac.man.cs.mig.util.graph.factory.GraphFactory
Creates a Graph
createGraph() - Method in class uk.ac.man.cs.mig.util.graph.factory.impl.DefaultGraphFactory
Creates a Graph
createGroupEntry(URI, boolean, boolean, XmlBaseContext) - Static method in class org.protege.editor.owl.model.library.folder.FolderGroupManager
 
createHierarchy() - Method in class org.protege.editor.owl.model.hierarchy.tabbed.AbstractOWLObjectHierarchyCreator
 
createHierarchy() - Method in class org.protege.editor.owl.model.hierarchy.tabbed.OWLClassHierarchyCreator
 
createHTMLPane(HyperlinkListener) - Static method in class org.protege.editor.core.ui.util.ComponentFactory
Creates a JEditorPane suitable for showing HTML content
createImage() - Method in class org.protege.editor.owl.ui.transfer.OWLObjectDragGestureListener
 
createIncomingRelationships(OWLEntity, boolean) - Method in class org.protege.ontograf.common.ProtegeGraphModel
Creates all incoming relationships for the entityOfInterest.
createInstance(IExtension) - Method in class org.protege.editor.core.editorkit.plugin.EditorKitHookPluginLoader
 
createInstance(IExtension) - Method in class org.protege.editor.core.OntologyBuilderPluginLoader
 
createInstance(IExtension) - Method in class org.protege.editor.core.OntologyRepositoryFactoryPluginLoader
 
createInstance(IExtension) - Method in class org.protege.editor.core.plugin.AbstractPluginLoader
This method needs to be overriden to create an instance of the desired plugin, based on the plugin Extension
createInstance(IExtension) - Method in class org.protege.editor.core.ui.action.start.AltStartupActionPluginLoader
 
createInstance(IExtension) - Method in class org.protege.editor.core.ui.menu.MenuActionPluginLoader
 
createInstance(IExtension) - Method in class org.protege.editor.core.ui.preferences.PreferencesPanelPluginLoader
 
createInstance(IExtension) - Method in class org.protege.editor.core.ui.toolbar.MainToolBarActionPluginLoader
This method needs to be overriden to create an instance of the desired plugin, based on the plugin Extension
createInstance(IExtension) - Method in class org.protege.editor.core.ui.view.ViewComponentPluginLoader
 
createInstance(IExtension) - Method in class org.protege.editor.core.ui.view.ViewToolBarActionPluginLoader
This method needs to be overriden to create an instance of the desired plugin, based on the plugin Extension
createInstance(IExtension) - Method in class org.protege.editor.core.ui.workspace.WorkspaceTabPluginLoader
This method needs to be overriden to create an instance of the desired plugin, based on the plugin Extension
createInstance(IExtension) - Method in class org.protege.editor.owl.model.inference.ProtegeOWLReasonerPluginLoader
This method needs to be overriden to create an instance of the desired plugin, based on the plugin Extension
createInstance(IExtension) - Method in class org.protege.editor.owl.model.io.IOListenerPluginLoader
 
createInstance(IExtension) - Method in class org.protege.editor.owl.model.library.CatalogEntryManagerLoader
 
createInstance(IExtension) - Method in class org.protege.editor.owl.ui.editor.OWLClassExpressionEditorPluginLoader
 
createInstance(IExtension) - Method in class org.protege.editor.owl.ui.explanation.ExplanationPluginLoader
 
createInstance(IExtension) - Method in class org.protege.editor.owl.ui.explanation.io.InconsistentOntologyPluginLoader
 
createInstance(IExtension) - Method in class org.protege.editor.owl.ui.inference.InferencePreferencePluginLoader
 
createInstance(IExtension) - Method in class org.protege.editor.owl.ui.ontology.wizard.move.MoveAxiomsKitPluginLoader
 
createInstance(IExtension) - Method in class org.protege.editor.owl.ui.renderer.OWLEntityColorProviderPluginLoader
 
createInstance(IExtension) - Method in class org.protege.editor.owl.ui.renderer.plugin.RendererPluginLoader
 
CreateInstanceOfSelectedClassAction - Class in org.protege.editor.owl.ui.action
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 03-Feb-2007

CreateInstanceOfSelectedClassAction() - Constructor for class org.protege.editor.owl.ui.action.CreateInstanceOfSelectedClassAction
 
CreateInstanceOfThingAction - Class in org.protege.editor.owl.ui.action
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 03-Feb-2007

CreateInstanceOfThingAction() - Constructor for class org.protege.editor.owl.ui.action.CreateInstanceOfThingAction
 
createIRI(String, IRI) - Method in class org.protege.editor.owl.model.entity.CustomOWLEntityFactory
 
createJarFile(File) - Method in class org.protege.editor.core.util.BundleBuilder
 
createListItemBorder(JList, Object, int, boolean, boolean) - Method in class org.protege.editor.core.ui.list.MList
 
createListItemBorder(JList, Object, int, boolean, boolean) - Method in class org.protege.editor.owl.ui.framelist.OWLFrameList
 
createMouseInputListener() - Method in class org.protege.editor.owl.ui.framelist.OWLFrameList.OWLFrameListUI
 
createNewChild() - Method in class org.protege.editor.owl.ui.view.AbstractOWLPropertyHierarchyViewComponent
 
createNewChild() - Method in class org.protege.editor.owl.ui.view.annotationproperty.OWLAnnotationPropertyHierarchyViewComponent
 
createNewChild() - Method in class org.protege.editor.owl.ui.view.cls.ToldOWLClassHierarchyViewComponent
 
createNewChild() - Method in interface org.protege.editor.owl.ui.view.CreateNewChildTarget
 
CreateNewChildAction - Class in org.protege.editor.owl.ui.action
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 09-May-2007

Create a new object and makes it the child of the selected object

CreateNewChildAction() - Constructor for class org.protege.editor.owl.ui.action.CreateNewChildAction
 
CreateNewChildTarget - Interface in org.protege.editor.owl.ui.view
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 09-May-2007

createNewEntity() - Method in class org.protege.editor.owl.ui.action.OWLObjectHierarchyCreator
 
CreateNewEquivalentClassAction<C extends org.semanticweb.owlapi.model.OWLObject> - Class in org.protege.editor.owl.ui.framelist
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Nov 24, 2008

CreateNewEquivalentClassAction() - Constructor for class org.protege.editor.owl.ui.framelist.CreateNewEquivalentClassAction
 
createNewObject() - Method in class org.protege.editor.owl.ui.OWLIndividualListComponent
 
createNewObject() - Method in class org.protege.editor.owl.ui.view.cls.ToldOWLClassHierarchyViewComponent
 
createNewObject() - Method in interface org.protege.editor.owl.ui.view.CreateNewTarget
 
createNewObject() - Method in class org.protege.editor.owl.ui.view.individual.OWLIndividualListViewComponent
 
createNewObject() - Method in class org.protege.editor.owl.ui.view.individual.OWLIndividualsByTypeViewComponent
 
CreateNewObjectAction - Class in org.protege.editor.owl.ui.action
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 09-May-2007

CreateNewObjectAction() - Constructor for class org.protege.editor.owl.ui.action.CreateNewObjectAction
 
createNewOntology(OWLOntologyID, URI) - Method in interface org.protege.editor.owl.model.OWLModelManager
Creates a new, empty ontology that has the specified ontology ID - i.e.
createNewOntology(OWLOntologyID, URI) - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
 
CreateNewOntologyPanel - Class in org.protege.editor.owl.ui.ontology.wizard.move
Author: Matthew Horridge
The University Of Manchester
Information Management Group
Date: 23-Sep-2008

CreateNewOntologyPanel(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.ontology.wizard.move.CreateNewOntologyPanel
 
createNewSibling() - Method in class org.protege.editor.owl.ui.view.AbstractOWLPropertyHierarchyViewComponent
 
createNewSibling() - Method in class org.protege.editor.owl.ui.view.annotationproperty.OWLAnnotationPropertyHierarchyViewComponent
 
createNewSibling() - Method in class org.protege.editor.owl.ui.view.cls.ToldOWLClassHierarchyViewComponent
 
createNewSibling() - Method in interface org.protege.editor.owl.ui.view.CreateNewSiblingTarget
 
CreateNewSiblingAction - Class in org.protege.editor.owl.ui.action
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 09-May-2007

CreateNewSiblingAction() - Constructor for class org.protege.editor.owl.ui.action.CreateNewSiblingAction
 
CreateNewSiblingTarget - Interface in org.protege.editor.owl.ui.view
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 09-May-2007

CreateNewTarget - Interface in org.protege.editor.owl.ui.view
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 09-May-2007

createNode(Object) - Method in class uk.ac.man.cs.mig.util.graph.factory.impl.DefaultNodeFactory
Creates a node
createNode(Object) - Method in interface uk.ac.man.cs.mig.util.graph.factory.NodeFactory
Creates a node
createNonBufferingReasoner(OWLOntology) - Method in class org.protege.editor.owl.model.inference.NoOpReasonerFactory
 
createNonBufferingReasoner(OWLOntology, OWLReasonerConfiguration) - Method in class org.protege.editor.owl.model.inference.NoOpReasonerFactory
 
createObject() - Method in class org.protege.editor.owl.ui.clsdescriptioneditor.ExpressionEditor
 
createObject(String) - Method in class org.protege.editor.owl.ui.clsdescriptioneditor.OWLDataRangeChecker
 
createObject(String) - Method in interface org.protege.editor.owl.ui.clsdescriptioneditor.OWLExpressionChecker
 
CreateOntologyWizard - Class in org.protege.editor.owl.ui.ontology.wizard.create
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 12-May-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

CreateOntologyWizard(Frame, OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.ontology.wizard.create.CreateOntologyWizard
 
createOutgoingRelationships(OWLEntity, boolean) - Method in class org.protege.ontograf.common.ProtegeGraphModel
Creates all outgoing relationships for a given OWLEntity.
createOutputStream(String) - Method in class uk.ac.man.cs.mig.coode.owlviz.command.ExportCommand
Creates an export stream given a file path name.
createOWLAnnotationProperty(String, IRI) - Method in class org.protege.editor.owl.model.entity.CustomOWLEntityFactory
 
createOWLAnnotationProperty(String, IRI) - Method in interface org.protege.editor.owl.model.entity.OWLEntityFactory
 
createOWLAnnotationProperty() - Method in class org.protege.editor.owl.model.OWLWorkspace
 
createOWLCellRenderer() - Method in class org.protege.editor.owl.model.OWLWorkspace
 
createOWLCellRenderer(boolean, boolean) - Method in class org.protege.editor.owl.model.OWLWorkspace
 
createOWLClass(String, IRI) - Method in class org.protege.editor.owl.model.entity.CustomOWLEntityFactory
 
createOWLClass(String, IRI) - Method in interface org.protege.editor.owl.model.entity.OWLEntityFactory
 
createOWLClass() - Method in class org.protege.editor.owl.model.OWLWorkspace
 
createOWLDataProperty(String, IRI) - Method in class org.protege.editor.owl.model.entity.CustomOWLEntityFactory
 
createOWLDataProperty(String, IRI) - Method in interface org.protege.editor.owl.model.entity.OWLEntityFactory
 
createOWLDataProperty() - Method in class org.protege.editor.owl.model.OWLWorkspace
 
createOWLDatatype(String, IRI) - Method in class org.protege.editor.owl.model.entity.CustomOWLEntityFactory
 
createOWLDatatype(String, IRI) - Method in interface org.protege.editor.owl.model.entity.OWLEntityFactory
 
createOWLDatatype() - Method in class org.protege.editor.owl.model.OWLWorkspace
 
createOWLEntity(Class<T>, String, IRI) - Method in class org.protege.editor.owl.model.entity.CustomOWLEntityFactory
 
createOWLEntity(Class<T>, String, IRI) - Method in interface org.protege.editor.owl.model.entity.OWLEntityFactory
 
createOWLIndividual(String, IRI) - Method in class org.protege.editor.owl.model.entity.CustomOWLEntityFactory
 
createOWLIndividual(String, IRI) - Method in interface org.protege.editor.owl.model.entity.OWLEntityFactory
 
createOWLIndividual() - Method in class org.protege.editor.owl.model.OWLWorkspace
 
createOWLObjectProperty(String, IRI) - Method in class org.protege.editor.owl.model.entity.CustomOWLEntityFactory
 
createOWLObjectProperty(String, IRI) - Method in interface org.protege.editor.owl.model.entity.OWLEntityFactory
 
createOWLObjectProperty() - Method in class org.protege.editor.owl.model.OWLWorkspace
 
createOWLVizTabUI() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizView
 
createPaddingBorder(JList, Object, int, boolean, boolean) - Method in class org.protege.editor.core.ui.list.MList
 
createPaddingBorder(JList, Object, int, boolean, boolean) - Method in class org.protege.editor.owl.ui.list.OWLAxiomList
 
createPlugin(String, TabbedWorkspace) - Method in class org.protege.editor.core.ui.workspace.CustomWorkspaceTabsManager
 
createPlugin(String, TabbedWorkspace) - Method in class org.protege.editor.owl.model.OWLCustomWorkspaceTabsManager
 
createPopupMenu() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizGraphPanel
 
createProperty() - Method in class org.protege.editor.owl.ui.view.AbstractOWLPropertyHierarchyViewComponent
 
createProperty() - Method in class org.protege.editor.owl.ui.view.dataproperty.OWLDataPropertyHierarchyViewComponent
 
createProperty() - Method in class org.protege.editor.owl.ui.view.objectproperty.OWLObjectPropertyHierarchyViewComponent
 
createPropertySelectorPanel() - Method in class org.protege.editor.owl.ui.editor.AbstractRestrictionCreatorPanel
 
createPropertySelectorPanel() - Method in class org.protege.editor.owl.ui.editor.OWLDataRestrictionCreatorPanel
 
createPropertySelectorPanel() - Method in class org.protege.editor.owl.ui.editor.OWLObjectRestrictionCreatorPanel
 
createReasoner(OWLOntology) - Method in class org.protege.editor.owl.model.inference.NoOpReasonerFactory
 
createReasoner(OWLOntology, OWLReasonerConfiguration) - Method in class org.protege.editor.owl.model.inference.NoOpReasonerFactory
 
createReasoner(OWLOntology, ReasonerProgressMonitor) - Method in class org.protege.editor.owl.model.inference.NoOpReasonerInfo
 
createReasoner(OWLOntology, ProtegeOWLReasonerInfo, ReasonerProgressMonitor) - Static method in class org.protege.editor.owl.model.inference.ReasonerUtilities
 
createRepository() - Method in class org.protege.editor.core.OntologyRepositoryFactory
Creates the repository.
createRepository() - Method in class org.protege.editor.owl.model.repository.TONESRepositoryFactory
 
createRestriction(P, F, int) - Method in class org.protege.editor.owl.ui.editor.AbstractRestrictionCreatorPanel.CardinalityRestrictionCreator
 
createRestrictions(Set<P>, Set<F>, Set<OWLClassExpression>) - Method in class org.protege.editor.owl.ui.editor.AbstractRestrictionCreatorPanel.CardinalityRestrictionCreator
 
createScalingOptionPanel() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.exportwizard.SelectFormatPage
Creates a panel that allows scaling options to be set for the export format.
createScrollPane(JComponent) - Static method in class org.protege.editor.core.ui.util.ComponentFactory
 
createSibling(Set<E>, E) - Method in class org.protege.editor.owl.ui.action.OWLObjectHierarchyCreator
 
CreateTabAction - Class in org.protege.editor.core.ui.workspace.tabs
 
CreateTabAction() - Constructor for class org.protege.editor.core.ui.workspace.tabs.CreateTabAction
 
createTempFile(File) - Static method in class org.protege.editor.core.FileUtils
 
createTextField() - Static method in class org.protege.editor.core.ui.util.ComponentFactory
 
createTitledBorder(String) - Static method in class org.protege.editor.core.ui.util.ComponentFactory
 
createToolBar(Controller, Controller) - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizView
 
createToolTip() - Method in class uk.ac.man.cs.mig.util.graph.ui.impl.DefaultGraphView
Returns the instance of JToolTip that should be used to display the tooltip.
createTreeNode(N) - Method in class org.protege.editor.owl.ui.tree.OWLObjectTree
 
createTypes() - Method in class org.protege.editor.owl.ui.editor.AbstractRestrictionCreatorPanel
 
createTypes() - Method in class org.protege.editor.owl.ui.editor.OWLDataRestrictionCreatorPanel
 
createTypes() - Method in class org.protege.editor.owl.ui.editor.OWLObjectRestrictionCreatorPanel
 
createUI() - Method in class org.protege.editor.core.ui.view.View
 
createUI() - Method in class org.protege.editor.core.ui.wizard.AbstractWizardPanel
 
createUI(JComponent) - Method in class org.protege.editor.core.ui.wizard.AbstractWizardPanel
 
createUI(JComponent) - Method in class org.protege.editor.owl.ui.action.export.inferred.ExportInferredOntologyIDPanel
 
createUI(JComponent) - Method in class org.protege.editor.owl.ui.action.export.inferred.ExportInferredOntologyIncludeAssertedAxiomsPanel
 
createUI(JComponent) - Method in class org.protege.editor.owl.ui.action.export.inferred.ExportInferredOntologyWizardSelectAxiomsPanel
 
createUI(JComponent) - Method in class org.protege.editor.owl.ui.action.OntologyFormatPage
 
createUI(JComponent) - Method in class org.protege.editor.owl.ui.hierarchy.creation.MakeSiblingClassesDisjointPanel
 
createUI(JComponent) - Method in class org.protege.editor.owl.ui.hierarchy.creation.PickRootClassPanel
 
createUI(JComponent) - Method in class org.protege.editor.owl.ui.hierarchy.creation.TabIndentedHierarchyPanel
 
createUI(JComponent) - Method in class org.protege.editor.owl.ui.ontology.imports.missing.CopyOptionPanel
 
createUI(JComponent) - Method in class org.protege.editor.owl.ui.ontology.imports.missing.ResolutionTypePanel
 
createUI(JComponent) - Method in class org.protege.editor.owl.ui.ontology.imports.missing.SpecifyFilePathPanel
 
createUI(JComponent) - Method in class org.protege.editor.owl.ui.ontology.imports.wizard.page.AnticipateOntologyIdPage
 
createUI(JComponent) - Method in class org.protege.editor.owl.ui.ontology.imports.wizard.page.ImportConfirmationPage
 
createUI(JComponent) - Method in class org.protege.editor.owl.ui.ontology.imports.wizard.page.ImportTypePage
 
createUI(JComponent) - Method in class org.protege.editor.owl.ui.ontology.imports.wizard.page.LibraryPage
 
createUI(JComponent) - Method in class org.protege.editor.owl.ui.ontology.imports.wizard.page.LoadedOntologyPage
 
createUI(JComponent) - Method in class org.protege.editor.owl.ui.ontology.imports.wizard.page.LocalFilePage
 
createUI(JComponent) - Method in class org.protege.editor.owl.ui.ontology.imports.wizard.page.SelectImportLocationPage
 
createUI(JComponent) - Method in class org.protege.editor.owl.ui.ontology.imports.wizard.page.URLPage
 
createUI(OWLOntologyID) - Method in class org.protege.editor.owl.ui.ontology.OntologyIDJDialog
 
createUI(JComponent) - Method in class org.protege.editor.owl.ui.ontology.wizard.AbstractSelectOntologiesPage
 
createUI(JComponent) - Method in class org.protege.editor.owl.ui.ontology.wizard.create.OntologyIDPanel
 
createUI(JComponent) - Method in class org.protege.editor.owl.ui.ontology.wizard.create.PhysicalLocationPanel
 
createUI(JComponent) - Method in class org.protege.editor.owl.ui.ontology.wizard.merge.MergeTypePage
 
createUI(JComponent) - Method in class org.protege.editor.owl.ui.ontology.wizard.merge.SelectOntologiesPage
 
createUI(JComponent) - Method in class org.protege.editor.owl.ui.ontology.wizard.merge.SelectTargetOntologyPage
 
createUI(JComponent) - Method in class org.protege.editor.owl.ui.ontology.wizard.move.MoveAxiomsWizardKitConfigurationPanel
 
createUI(JComponent) - Method in class org.protege.editor.owl.ui.ontology.wizard.move.SelectActionPanel
 
createUI(JComponent) - Method in class org.protege.editor.owl.ui.ontology.wizard.move.SelectKitPanel
 
createUI(JComponent) - Method in class org.protege.editor.owl.ui.ontology.wizard.move.SelectTargetOntologyTypePanel
 
createUI() - Method in class org.protege.editor.owl.ui.selector.AbstractSelectorPanel
 
createUI() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.exportwizard.SelectFormatPage
Creates the UI for the format page.
createUI() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.exportwizard.SpecifyFileNamePage
 
createUI() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.exportwizard.SpecifyHierarchyPage
 
createUI() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.options.DisplayOptionsPage
 
createUI() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.options.LayoutDirectionOptionsPage
 
createUI() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.options.UIOptionsPage
 
createViewToolBar() - Static method in class org.protege.editor.core.ui.util.ComponentFactory
 
createWorkspaceTab(String) - Method in class org.protege.editor.core.ui.workspace.TabbedWorkspace
 
createWorkspaceTab(String) - Method in class org.protege.editor.owl.model.OWLWorkspace
 
curChar - Variable in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.DotParserTokenManager
 
CURRENT_FILE_DIRECTORY_KEY - Static variable in class org.protege.editor.core.ui.util.UIUtil
 
CURRENT_PANEL_DESCRIPTOR_PROPERTY - Static variable in class org.protege.editor.core.ui.wizard.WizardModel
Identification string for the current panel.
CURRENT_VERSION - Static variable in class org.protege.editor.owl.model.library.folder.FolderGroupManager
 
CURRENT_WORKING_DIRECTORY_PROP - Static variable in class org.protege.common.CommonProtegeProperties
 
currentRenderer - Variable in class org.protege.editor.owl.ui.tree.OWLModelManagerTree
 
currentToken - Variable in exception uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.ParseException
This is the last token that has been consumed successfully.
CustomLabelDescriptor - Class in org.protege.editor.owl.model.entity
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Jul 28, 2008

CustomLabelDescriptor() - Constructor for class org.protege.editor.owl.model.entity.CustomLabelDescriptor
 
CustomOWLEntityFactory - Class in org.protege.editor.owl.model.entity
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Jul 28, 2008

CustomOWLEntityFactory(OWLModelManager) - Constructor for class org.protege.editor.owl.model.entity.CustomOWLEntityFactory
 
CustomOWLEntityFactory.EntityNameInfo - Class in org.protege.editor.owl.model.entity
 
CustomOWLEntityFactory.EntityNameInfo(IRI, String, String) - Constructor for class org.protege.editor.owl.model.entity.CustomOWLEntityFactory.EntityNameInfo
 
CustomWorkspaceTabsManager - Class in org.protege.editor.core.ui.workspace
Author: Matthew Horridge
The University Of Manchester
Information Management Group
Date: 13-Aug-2008

Manages custom tabs.
CustomWorkspaceTabsManager() - Constructor for class org.protege.editor.core.ui.workspace.CustomWorkspaceTabsManager
 
CustomWorkspaceTabsManager.CustomTabPlugin - Class in org.protege.editor.core.ui.workspace
A class that acts as a dynamic plugin
CustomWorkspaceTabsManager.CustomTabPlugin(String, TabbedWorkspace) - Constructor for class org.protege.editor.core.ui.workspace.CustomWorkspaceTabsManager.CustomTabPlugin
 
CutAction - Class in org.protege.editor.owl.ui.action
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 09-May-2007

CutAction() - Constructor for class org.protege.editor.owl.ui.action.CutAction
 
cutObjects() - Method in class org.protege.editor.owl.ui.framelist.OWLFrameList
 
cutObjects() - Method in interface org.protege.editor.owl.ui.view.Cuttable
 
Cuttable - Interface in org.protege.editor.owl.ui.view
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 09-May-2007


D

DATA_DIR_PROP - Static variable in class org.protege.common.CommonProtegeProperties
 
DATA_FOLDER_NAME - Static variable in class org.protege.editor.core.FileManager
 
DATA_PROPERTY_COLOR_KEY - Static variable in class org.protege.editor.core.ProtegeProperties
 
DATA_PROPERTY_VIEW_CATEGORY - Static variable in class org.protege.editor.core.ProtegeProperties
 
DataPropertyCountMetric - Class in org.protege.editor.owl.ui.metrics
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 20-Feb-2007

DataPropertyCountMetric() - Constructor for class org.protege.editor.owl.ui.metrics.DataPropertyCountMetric
 
DataPropertyReferencingAxiomStrategy - Class in org.protege.editor.owl.model.selection.axioms
User: nickdrummond Date: May 20, 2008
DataPropertyReferencingAxiomStrategy() - Constructor for class org.protege.editor.owl.model.selection.axioms.DataPropertyReferencingAxiomStrategy
 
DATATYPE_COLOR_KEY - Static variable in class org.protege.editor.core.ProtegeProperties
 
DATATYPE_VIEW_CATEGORY - Static variable in class org.protege.editor.core.ProtegeProperties
 
DEBUG - Static variable in class org.protege.editor.core.ui.split.ViewSplitPaneDivider
 
debugStream - Variable in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.DotParserTokenManager
 
DecreaseFontSizeAction - Class in org.protege.editor.core.ui.action
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 21-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

DecreaseFontSizeAction() - Constructor for class org.protege.editor.core.ui.action.DecreaseFontSizeAction
 
DEFAULT - Static variable in interface uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.DotParserConstants
 
DEFAULT_BASE - Static variable in class org.protege.editor.owl.ui.ontology.OntologyPreferences
 
DEFAULT_DELIMETER - Static variable in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSectionRow
 
DEFAULT_EXPLANATION_ID - Static variable in class org.protege.editor.owl.ui.explanation.ExplanationDialog
 
DEFAULT_FONT - Static variable in class org.protege.editor.core.ui.util.ProtegePlasticTheme
 
DEFAULT_FONT_NAME - Static variable in class org.protege.editor.owl.ui.renderer.OWLRendererPreferences
 
DEFAULT_FONT_SIZE - Static variable in class org.protege.editor.core.ui.util.ProtegePlasticTheme
 
DEFAULT_FONT_SIZE - Static variable in class org.protege.editor.owl.ui.renderer.OWLRendererPreferences
 
DEFAULT_LINUX_PATH - Static variable in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.DotLayoutEngineProperties
 
DEFAULT_LOCAL_BASE_KEY - Static variable in class org.protege.editor.owl.ui.ontology.wizard.create.PhysicalLocationPanel
 
DEFAULT_MAC_PATH - Static variable in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.DotLayoutEngineProperties
 
DEFAULT_MAX_ENTRIES - Static variable in class org.protege.editor.owl.ui.clsdescriptioneditor.OWLAutoCompleter
 
DEFAULT_PAGE - Static variable in class uk.ac.man.cs.mig.coode.owlviz.ui.options.OptionsDialog
 
DEFAULT_PAGE - Static variable in class uk.ac.man.cs.mig.coode.owlviz.ui.options.OWLVizPreferencesPane
 
DEFAULT_PREFIX - Static variable in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSectionRow
 
DEFAULT_RANK_SPACING - Static variable in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.DotLayoutEngineProperties
 
DEFAULT_REASONER_ID - Static variable in class org.protege.editor.owl.model.inference.ReasonerPreferences
 
DEFAULT_REGISTRY - Static variable in class org.protege.editor.core.update.PluginManager
 
DEFAULT_RENDERER_CLASS_NAME - Static variable in class org.protege.editor.owl.ui.renderer.OWLRendererPreferences
 
DEFAULT_SUFFIX - Static variable in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSectionRow
 
DEFAULT_VERSION - Static variable in class org.protege.editor.owl.model.library.LibraryUtilities
 
DEFAULT_WINDOWS_PATH - Static variable in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.DotLayoutEngineProperties
 
DefaultController - Class in uk.ac.man.cs.mig.util.graph.controller.impl
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Jan 15, 2004

matthew.horridge@cs.visualisedObjectManager.ac.uk
www.cs.visualisedObjectManager.ac.uk/~horridgm

DefaultController(GraphModel) - Constructor for class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultController
 
DefaultEdge - Class in uk.ac.man.cs.mig.util.graph.graph.impl
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Jan 14, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

DefaultEdge(Node, Node, Object, int) - Constructor for class uk.ac.man.cs.mig.util.graph.graph.impl.DefaultEdge
 
DefaultEdgeFactory - Class in uk.ac.man.cs.mig.util.graph.factory.impl
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Jan 14, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

DefaultEdgeFactory(Controller) - Constructor for class uk.ac.man.cs.mig.util.graph.factory.impl.DefaultEdgeFactory
Creates an EdgeFactory that produces Egdes based on the model that may be accessed by the specified controller.
DefaultEdgeLabelRenderer - Class in uk.ac.man.cs.mig.util.graph.renderer.impl
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Feb 17, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

DefaultEdgeLabelRenderer() - Constructor for class uk.ac.man.cs.mig.util.graph.renderer.impl.DefaultEdgeLabelRenderer
 
DefaultEdgeRenderer - Class in uk.ac.man.cs.mig.util.graph.renderer.impl
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Jan 14, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

DefaultEdgeRenderer(Controller) - Constructor for class uk.ac.man.cs.mig.util.graph.renderer.impl.DefaultEdgeRenderer
 
DefaultGraph - Class in uk.ac.man.cs.mig.util.graph.graph.impl
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Jan 14, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

DefaultGraph() - Constructor for class uk.ac.man.cs.mig.util.graph.graph.impl.DefaultGraph
 
DefaultGraph.EdgeKey - Class in uk.ac.man.cs.mig.util.graph.graph.impl
 
DefaultGraph.EdgeKey(Edge) - Constructor for class uk.ac.man.cs.mig.util.graph.graph.impl.DefaultGraph.EdgeKey
 
DefaultGraph.EdgeKey(Node, Node) - Constructor for class uk.ac.man.cs.mig.util.graph.graph.impl.DefaultGraph.EdgeKey
 
DefaultGraphFactory - Class in uk.ac.man.cs.mig.util.graph.factory.impl
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Jan 14, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

DefaultGraphFactory() - Constructor for class uk.ac.man.cs.mig.util.graph.factory.impl.DefaultGraphFactory
 
DefaultGraphGenerator - Class in uk.ac.man.cs.mig.util.graph.controller.impl
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Jan 13, 2004

matthew.horridge@cs.visualisedObjectManager.ac.uk
www.cs.visualisedObjectManager.ac.uk/~horridgm

DefaultGraphGenerator(Controller, VisualisedObjectManager, GraphFactory, NodeFactory, EdgeFactory, NodeRenderer) - Constructor for class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultGraphGenerator
 
DefaultGraphLayoutEngine - Class in uk.ac.man.cs.mig.util.graph.layout.impl
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Jan 15, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

DefaultGraphLayoutEngine() - Constructor for class uk.ac.man.cs.mig.util.graph.layout.impl.DefaultGraphLayoutEngine
 
DefaultGraphModel - Class in uk.ac.man.cs.mig.util.graph.model.impl
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Jan 15, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

DefaultGraphModel() - Constructor for class uk.ac.man.cs.mig.util.graph.model.impl.DefaultGraphModel
 
DefaultGraphNode - Class in uk.ac.man.cs.mig.util.graph.model.impl
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Jan 15, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

DefaultGraphNode(Object) - Constructor for class uk.ac.man.cs.mig.util.graph.model.impl.DefaultGraphNode
 
DefaultGraphSelectionModel - Class in uk.ac.man.cs.mig.util.graph.controller.impl
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Jan 12, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

DefaultGraphSelectionModel() - Constructor for class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultGraphSelectionModel
 
DefaultGraphView - Class in uk.ac.man.cs.mig.util.graph.ui.impl
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Jan 14, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

DefaultGraphView(Controller, NodeRenderer, EdgeRenderer) - Constructor for class uk.ac.man.cs.mig.util.graph.ui.impl.DefaultGraphView
 
DefaultNode - Class in uk.ac.man.cs.mig.util.graph.graph.impl
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Jan 14, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

DefaultNode(Object) - Constructor for class uk.ac.man.cs.mig.util.graph.graph.impl.DefaultNode
Constructs a Node that represents the specified object.
DefaultNodeFactory - Class in uk.ac.man.cs.mig.util.graph.factory.impl
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Jan 14, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

DefaultNodeFactory() - Constructor for class uk.ac.man.cs.mig.util.graph.factory.impl.DefaultNodeFactory
 
DefaultNodeLabelRenderer - Class in uk.ac.man.cs.mig.util.graph.renderer.impl
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Jan 16, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

DefaultNodeLabelRenderer() - Constructor for class uk.ac.man.cs.mig.util.graph.renderer.impl.DefaultNodeLabelRenderer
 
DefaultNodeRenderer - Class in uk.ac.man.cs.mig.util.graph.renderer.impl
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Jan 14, 2004

matthew.horridge@cs.visualisedObjectManager.ac.uk
www.cs.visualisedObjectManager.ac.uk/~horridgm

DefaultNodeRenderer(Controller) - Constructor for class uk.ac.man.cs.mig.util.graph.renderer.impl.DefaultNodeRenderer
 
DefaultOntologyURIPanel - Class in org.protege.editor.owl.ui.ontology
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 28-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

DefaultOntologyURIPanel() - Constructor for class org.protege.editor.owl.ui.ontology.DefaultOntologyURIPanel
 
DefaultOWLReasonerExceptionHandler - Class in org.protege.editor.owl.model.inference
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 26-Nov-2007

DefaultOWLReasonerExceptionHandler() - Constructor for class org.protege.editor.owl.model.inference.DefaultOWLReasonerExceptionHandler
 
DefaultPluginActivator - Class in org.protege.editor.core.plugin
 
DefaultPluginActivator() - Constructor for class org.protege.editor.core.plugin.DefaultPluginActivator
 
DefaultPluginExtensionMatcher - Class in org.protege.editor.core.plugin
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Mar 17, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

A default implementation of the PluginExtensionMatcher that just matches all plugin Extensions

DefaultPluginExtensionMatcher() - Constructor for class org.protege.editor.core.plugin.DefaultPluginExtensionMatcher
 
defaultSelected - Static variable in class org.protege.editor.core.ui.util.CheckTable
 
DefaultThumbnailView - Class in uk.ac.man.cs.mig.util.graph.ui.impl
Created by IntelliJ IDEA.
DefaultThumbnailView(ThumbnailViewSource) - Constructor for class uk.ac.man.cs.mig.util.graph.ui.impl.DefaultThumbnailView
 
DefaultVisualisedObjectManager - Class in uk.ac.man.cs.mig.util.graph.controller.impl
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Jan 12, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

DefaultVisualisedObjectManager(GraphModel) - Constructor for class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultVisualisedObjectManager
 
Deleteable - Interface in org.protege.editor.owl.ui.view
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 02-May-2007

DeleteAction - Class in org.protege.editor.owl.ui.action
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 02-May-2007

DeleteAction() - Constructor for class org.protege.editor.owl.ui.action.DeleteAction
 
DeleteClassAction - Class in org.protege.editor.owl.ui.action
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 29-May-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

DeleteClassAction(OWLEditorKit, OWLEntitySetProvider<OWLClass>) - Constructor for class org.protege.editor.owl.ui.action.DeleteClassAction
 
deleteCustomTab(String) - Method in class org.protege.editor.core.ui.workspace.CustomWorkspaceTabsManager
Deletes a previously added custom tab
DeleteCustomTabsAction - Class in org.protege.editor.core.ui.workspace.tabs
 
DeleteCustomTabsAction() - Constructor for class org.protege.editor.core.ui.workspace.tabs.DeleteCustomTabsAction
 
DeleteDataPropertyAction - Class in org.protege.editor.owl.ui.action
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 20-Apr-2007

DeleteDataPropertyAction(OWLEditorKit, OWLEntitySetProvider<OWLDataProperty>) - Constructor for class org.protege.editor.owl.ui.action.DeleteDataPropertyAction
 
DeleteEntityAction - Class in org.protege.editor.owl.ui.action
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 22-Feb-2007

DeleteEntityAction() - Constructor for class org.protege.editor.owl.ui.action.DeleteEntityAction
 
DeleteIndividualAction - Class in org.protege.editor.owl.ui.action
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 20-Apr-2007

DeleteIndividualAction(OWLEditorKit, OWLEntitySetProvider<OWLNamedIndividual>) - Constructor for class org.protege.editor.owl.ui.action.DeleteIndividualAction
 
DeleteObjectPropertyAction - Class in org.protege.editor.owl.ui.action
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 20-Apr-2007

DeleteObjectPropertyAction(OWLEditorKit, OWLEntitySetProvider<OWLObjectProperty>) - Constructor for class org.protege.editor.owl.ui.action.DeleteObjectPropertyAction
 
deleteRecursively(File) - Static method in class org.protege.editor.core.FileUtils
 
DeleteRedirectAction - Class in org.protege.editor.owl.ui.library
 
DeleteRedirectAction(JTree, TreePath) - Constructor for class org.protege.editor.owl.ui.library.DeleteRedirectAction
 
DESCRIPTION_EDITOR_TITLE - Static variable in class org.protege.editor.owl.ui.editor.OWLObjectPropertyTabbedSetEditor
 
DETACHED_WINDOWS_FLOAT - Static variable in class org.protege.editor.core.ui.view.View
 
DIALOGS_ALWAYS_CENTRED - Static variable in class org.protege.editor.owl.ui.preferences.GeneralPreferencesPanel
 
DIGReasonerPreferencesPanel - Class in org.protege.editor.owl.ui.inference
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 30-Aug-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

DIGReasonerPreferencesPanel() - Constructor for class org.protege.editor.owl.ui.inference.DIGReasonerPreferencesPanel
 
dimensionFromZoomedDimension(Dimension) - Method in class uk.ac.man.cs.mig.util.graph.ui.impl.DefaultGraphView
Converts a Dimension from a 'zoomed' Dimension.
dimensionFromZoomedDimension(Dimension) - Method in interface uk.ac.man.cs.mig.util.graph.ui.Zoomable
Converts a Dimension from a 'zoomed' Dimension.
dimensionToZoomedDimension(Dimension) - Method in class uk.ac.man.cs.mig.util.graph.ui.impl.DefaultGraphView
Converts a Dimension to a 'zoomed' Dimension.
dimensionToZoomedDimension(Dimension) - Method in interface uk.ac.man.cs.mig.util.graph.ui.Zoomable
Converts a Dimension to a 'zoomed' Dimension.
DIR_PROP - Static variable in class org.protege.editor.owl.model.library.folder.FolderGroupManager
 
DIRECT_INDIVIDUAL_SLOT_TYPE - Static variable in class org.protege.ontograf.common.ProtegeGraphModel
 
DIRECT_SUBCLASS_SLOT_TYPE - Static variable in class org.protege.ontograf.common.ProtegeGraphModel
Protege specific relationships
DIRECTION_BACK - Static variable in interface uk.ac.man.cs.mig.util.graph.model.GraphModel
The direction of the relationship is from child to parent
DIRECTION_BOTH - Static variable in interface uk.ac.man.cs.mig.util.graph.model.GraphModel
The relationship is bidirectional - i.e.
DIRECTION_FORWARD - Static variable in interface uk.ac.man.cs.mig.util.graph.model.GraphModel
The direction of the relationship is from parent to child.
DIRECTION_NONE - Static variable in interface uk.ac.man.cs.mig.util.graph.model.GraphModel
The relationship does not have a direction.
disable_tracing() - Method in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.DotParser
 
disableRegisteredActions() - Method in class org.protege.editor.owl.ui.view.AbstractOWLSelectionViewComponent
 
DISJOINT_CLASS_INDICATOR_ICON - Static variable in class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizIcons
 
display(OWLClass) - Method in class org.protege.ontograf.common.GraphController
 
DISPLAY_ANONYMOUS_CLASSES - Static variable in class uk.ac.man.cs.mig.coode.owlviz.ui.options.OWLVizProperties
Deprecated. The String value of a Boolean that indicated whether anonymous classes should be displayed.
DISPLAY_DISJOINT_INDICATOR - Static variable in class uk.ac.man.cs.mig.coode.owlviz.ui.options.OWLVizProperties
Deprecated. The String value of a Boolean that indicated whether classes that are disjoint to the selected class should be flagged.
DISPLAY_INDIVIDUALS - Static variable in class uk.ac.man.cs.mig.coode.owlviz.ui.options.OWLVizProperties
Deprecated. The String value of a Boolean that indicated whether individuals should be displayed.
DISPLAY_IS_A_LABELS - Static variable in class uk.ac.man.cs.mig.coode.owlviz.ui.options.OWLVizProperties
Deprecated. A String that represents a Boolean value that indicates whether or not is-a labels should be displayed.
displayAsSingleNode(OWLEntity) - Method in class org.protege.ontograf.common.GraphController
 
DisplayedInferencePreferences - Class in org.protege.editor.owl.model.inference
 
DisplayedInferencePreferences() - Constructor for class org.protege.editor.owl.model.inference.DisplayedInferencePreferences
 
DisplayedInferencesPreferencePanel - Class in org.protege.editor.owl.ui.inference
 
DisplayedInferencesPreferencePanel() - Constructor for class org.protege.editor.owl.ui.inference.DisplayedInferencesPreferencePanel
 
displayingPanel() - Method in class org.protege.editor.core.ui.wizard.WizardPanel
Override this method to perform functionality when the panel itself is displayed.
displayingPanel() - Method in class org.protege.editor.owl.ui.hierarchy.creation.MakeSiblingClassesDisjointPanel
 
displayingPanel() - Method in class org.protege.editor.owl.ui.hierarchy.creation.PickRootClassPanel
 
displayingPanel() - Method in class org.protege.editor.owl.ui.hierarchy.creation.TabIndentedHierarchyPanel
 
displayingPanel() - Method in class org.protege.editor.owl.ui.ontology.imports.missing.SpecifyFilePathPanel
 
displayingPanel() - Method in class org.protege.editor.owl.ui.ontology.imports.wizard.page.AnticipateOntologyIdPage
 
displayingPanel() - Method in class org.protege.editor.owl.ui.ontology.imports.wizard.page.ImportConfirmationPage
 
displayingPanel() - Method in class org.protege.editor.owl.ui.ontology.imports.wizard.page.LibraryPage
 
displayingPanel() - Method in class org.protege.editor.owl.ui.ontology.imports.wizard.page.LoadedOntologyPage
 
displayingPanel() - Method in class org.protege.editor.owl.ui.ontology.imports.wizard.page.LocalFilePage
 
displayingPanel() - Method in class org.protege.editor.owl.ui.ontology.imports.wizard.page.SelectImportLocationPage
 
displayingPanel() - Method in class org.protege.editor.owl.ui.ontology.imports.wizard.page.URLPage
 
displayingPanel() - Method in class org.protege.editor.owl.ui.ontology.wizard.AbstractSelectOntologiesPage
 
displayingPanel() - Method in class org.protege.editor.owl.ui.ontology.wizard.create.OntologyIDPanel
 
displayingPanel() - Method in class org.protege.editor.owl.ui.ontology.wizard.create.PhysicalLocationPanel
 
displayingPanel() - Method in class org.protege.editor.owl.ui.ontology.wizard.merge.MergeTypePage
 
displayingPanel() - Method in class org.protege.editor.owl.ui.ontology.wizard.merge.SelectOntologiesPage
 
displayingPanel() - Method in class org.protege.editor.owl.ui.ontology.wizard.merge.SelectTargetOntologyPage
 
displayingPanel() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.SelectTargetOntologyTypePanel
 
DisplayOptionsPage - Class in uk.ac.man.cs.mig.coode.owlviz.ui.options
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Mar 2, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

DisplayOptionsPage(OWLVizViewOptions) - Constructor for class uk.ac.man.cs.mig.coode.owlviz.ui.options.DisplayOptionsPage
 
displayOWLEntity(OWLEntity) - Method in class org.protege.editor.owl.model.OWLWorkspace
 
displayPopup(Point) - Method in class uk.ac.man.cs.mig.util.graph.ui.impl.DefaultGraphView
Causes the popup to be displayed at the specified point if it lies within a Node boundary.
Disposable - Interface in org.protege.editor.core
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Sep 15, 2008

DisposableAction - Class in org.protege.editor.core.ui.view
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 25-May-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

DisposableAction(String, Icon) - Constructor for class org.protege.editor.core.ui.view.DisposableAction
 
dispose() - Method in class org.protege.editor.core.AbstractModelManager
 
dispose() - Method in class org.protege.editor.core.BookMarkedURIManager
 
dispose() - Method in interface org.protege.editor.core.Disposable
 
dispose() - Method in class org.protege.editor.core.editorkit.AbstractEditorKit
 
dispose() - Method in class org.protege.editor.core.editorkit.RecentEditorKitManager
 
dispose() - Method in class org.protege.editor.core.plugin.PluginUtilities
 
dispose() - Method in class org.protege.editor.core.ProtegeManager
 
dispose() - Method in class org.protege.editor.core.ui.action.AbstractFontSizeAction
 
dispose() - Method in class org.protege.editor.core.ui.action.CheckPluginsAction
 
dispose() - Method in class org.protege.editor.core.ui.action.CloseAction
 
dispose() - Method in class org.protege.editor.core.ui.action.NewAction
 
dispose() - Method in class org.protege.editor.core.ui.action.OpenAction
 
dispose() - Method in class org.protege.editor.core.ui.action.OpenRecentAction
 
dispose() - Method in class org.protege.editor.core.ui.action.SaveAction
 
dispose() - Method in class org.protege.editor.core.ui.action.SaveAsAction
 
dispose() - Method in class org.protege.editor.core.ui.action.start.CheckPluginsAction
 
dispose() - Method in class org.protege.editor.core.ui.action.start.ResetPreferencesAction
 
dispose() - Method in class org.protege.editor.core.ui.action.TimestampOutputAction
 
dispose() - Method in class org.protege.editor.core.ui.menu.NullMenuAction
This method is called at the end of a plugin life cycle, when the plugin needs to be removed from the system.
dispose() - Method in class org.protege.editor.core.ui.menu.OpenURLMenuAction
 
dispose() - Method in class org.protege.editor.core.ui.preferences.PreferencesDialogPanel
 
dispose() - Method in class org.protege.editor.core.ui.preferences.ShowPreferencesAction
 
dispose() - Method in class org.protege.editor.core.ui.view.DisposableAction
This method should be overriden and used to detatch listeners etc.
dispose() - Method in class org.protege.editor.core.ui.view.View
 
dispose() - Method in class org.protege.editor.core.ui.view.ViewActionAdapter
This method is called at the end of a plugin life cycle, when the plugin needs to be removed from the system.
dispose() - Method in class org.protege.editor.core.ui.view.ViewContainer
 
dispose() - Method in class org.protege.editor.core.ui.view.ViewHolder
 
dispose() - Method in class org.protege.editor.core.ui.view.ViewsPane
 
dispose() - Method in class org.protege.editor.core.ui.wizard.Wizard
 
dispose() - Method in class org.protege.editor.core.ui.workspace.TabbedWorkspace
Disposes of the tabbed workspace.
dispose() - Method in class org.protege.editor.core.ui.workspace.tabs.CreateTabAction
 
dispose() - Method in class org.protege.editor.core.ui.workspace.tabs.DeleteCustomTabsAction
 
dispose() - Method in class org.protege.editor.core.ui.workspace.tabs.ExportTabAction
 
dispose() - Method in class org.protege.editor.core.ui.workspace.tabs.ImportTabAction
 
dispose() - Method in class org.protege.editor.core.ui.workspace.tabs.ResetCurrentTabAction
 
dispose() - Method in class org.protege.editor.core.ui.workspace.tabs.SaveAllTabsAction
 
dispose() - Method in class org.protege.editor.core.ui.workspace.tabs.TabsMenuAction
 
dispose() - Method in class org.protege.editor.core.ui.workspace.views.ViewMenuAction
 
dispose() - Method in class org.protege.editor.core.ui.workspace.Workspace
 
dispose() - Method in class org.protege.editor.core.ui.workspace.WorkspaceFrame
 
dispose() - Method in class org.protege.editor.core.ui.workspace.WorkspaceViewsTab
 
dispose() - Method in class org.protege.editor.core.update.PluginPreferencesPanel
 
dispose() - Method in class org.protege.editor.owl.model.cache.OWLEntityRenderingCacheImpl
 
dispose() - Method in class org.protege.editor.owl.model.cache.OWLExpressionUserCache
 
dispose() - Method in class org.protege.editor.owl.model.cache.OWLObjectRenderingCache
 
dispose() - Method in class org.protege.editor.owl.model.classexpression.anonymouscls.AnonymousDefinedClassManager
 
dispose() - Method in class org.protege.editor.owl.model.hierarchy.AbstractOWLObjectHierarchyProvider
 
dispose() - Method in class org.protege.editor.owl.model.hierarchy.AbstractOWLOntologyObjectHierarchyProvider
 
dispose() - Method in class org.protege.editor.owl.model.hierarchy.AbstractOWLPropertyHierarchyProvider
 
dispose() - Method in class org.protege.editor.owl.model.hierarchy.AssertedClassHierarchyProvider
 
dispose() - Method in class org.protege.editor.owl.model.hierarchy.cls.InferredOWLClassHierarchyProvider
 
dispose() - Method in class org.protege.editor.owl.model.hierarchy.IndividualsByInferredTypeHierarchyProvider
 
dispose() - Method in class org.protege.editor.owl.model.hierarchy.IndividualsByTypeHierarchyProvider
 
dispose() - Method in class org.protege.editor.owl.model.hierarchy.OWLAnnotationPropertyHierarchyProvider
 
dispose() - Method in class org.protege.editor.owl.model.hierarchy.OWLHierarchyManagerImpl
 
dispose() - Method in interface org.protege.editor.owl.model.hierarchy.OWLObjectHierarchyProvider
 
dispose() - Method in class org.protege.editor.owl.model.hierarchy.OWLOntologyHierarchyProvider
 
dispose() - Method in class org.protege.editor.owl.model.inference.AbstractProtegeOWLReasonerInfo
 
dispose() - Method in class org.protege.editor.owl.model.inference.NoOpReasoner
 
dispose() - Method in class org.protege.editor.owl.model.inference.NoOpReasonerInfo
 
dispose() - Method in class org.protege.editor.owl.model.inference.OWLReasonerManagerImpl
 
dispose() - Method in class org.protege.editor.owl.model.io.OntologySourcesManager
 
dispose() - Method in class org.protege.editor.owl.model.library.CatalogEntryManager
 
dispose() - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
 
dispose() - Method in class org.protege.editor.owl.model.OWLWorkspace
 
dispose() - Method in class org.protege.editor.owl.model.refactor.ontology.ConvertEntityURIsToIdentifierPattern
 
dispose() - Method in class org.protege.editor.owl.model.refactor.ontology.OntologyImportsWalker
 
dispose() - Method in class org.protege.editor.owl.model.refactor.ontology.OWLEntityIRIRegenerator
 
dispose() - Method in class org.protege.editor.owl.model.repository.ManchesterRepository
 
dispose() - Method in class org.protege.editor.owl.model.repository.TONESRepositoryFactory
 
dispose() - Method in class org.protege.editor.owl.model.selection.OWLClassAssertionSelectionModel
 
dispose() - Method in interface org.protege.editor.owl.model.selection.OWLSelectionHistoryManager
 
dispose() - Method in class org.protege.editor.owl.model.selection.OWLSelectionHistoryManagerImpl
 
dispose() - Method in class org.protege.editor.owl.OWLEditorKit
 
dispose() - Method in class org.protege.editor.owl.ui.action.AbstractDeleteEntityAction
 
dispose() - Method in class org.protege.editor.owl.ui.action.AbstractOntologySelectionStrategyAction
 
dispose() - Method in class org.protege.editor.owl.ui.action.AbstractOWLTreeAction
 
dispose() - Method in class org.protege.editor.owl.ui.action.AddCoveringAxiomAction
 
dispose() - Method in class org.protege.editor.owl.ui.action.AmalgamateDisjointClassesAction
 
dispose() - Method in class org.protege.editor.owl.ui.action.AmalgamateSuperClassesAction
 
dispose() - Method in class org.protege.editor.owl.ui.action.ChangeOntologyIRI
 
dispose() - Method in class org.protege.editor.owl.ui.action.CloseOntologiesAction
 
dispose() - Method in class org.protege.editor.owl.ui.action.CoerceDataPropertyValuesIntoPropertyRangeAction
 
dispose() - Method in class org.protege.editor.owl.ui.action.ConvertAssertionsOnPunsToAnnotations
 
dispose() - Method in class org.protege.editor.owl.ui.action.ConvertEntityURIsToLabels
 
dispose() - Method in class org.protege.editor.owl.ui.action.ConvertMinOneToSomeValuesFromAction
 
dispose() - Method in class org.protege.editor.owl.ui.action.ConvertToPrimitiveClassAction
 
dispose() - Method in class org.protege.editor.owl.ui.action.CreateClassHierarchyAction
 
dispose() - Method in class org.protege.editor.owl.ui.action.CreateEmptyOntologyAction
 
dispose() - Method in class org.protege.editor.owl.ui.action.CreateInstanceOfThingAction
This method is called at the end of a plugin life cycle, when the plugin needs to be removed from the system.
dispose() - Method in class org.protege.editor.owl.ui.action.DeleteIndividualAction
 
dispose() - Method in class org.protege.editor.owl.ui.action.export.inferred.ExportInferredOntologyAction
 
dispose() - Method in class org.protege.editor.owl.ui.action.FindAction
 
dispose() - Method in class org.protege.editor.owl.ui.action.FocusedComponentAction
 
dispose() - Method in class org.protege.editor.owl.ui.action.GatherOntologiesAction
 
dispose() - Method in class org.protege.editor.owl.ui.action.LoadIntoCurrentModelAction
 
dispose() - Method in class org.protege.editor.owl.ui.action.MakeAllIndividualsDifferent
 
dispose() - Method in class org.protege.editor.owl.ui.action.MergeOntologiesAction
 
dispose() - Method in class org.protege.editor.owl.ui.action.MoveAxiomsToOntologyAction
 
dispose() - Method in class org.protege.editor.owl.ui.action.OpenFromURLAction
 
dispose() - Method in class org.protege.editor.owl.ui.action.OWLObjectHierarchyDeleter
 
dispose() - Method in class org.protege.editor.owl.ui.action.RedoAction
This method is called at the end of a plugin life cycle, when the plugin needs to be removed from the system.
dispose() - Method in class org.protege.editor.owl.ui.action.RemoveAllDisjointAxiomsAction
 
dispose() - Method in class org.protege.editor.owl.ui.action.RenameEntitiesBySearchAndReplaceAction
 
dispose() - Method in class org.protege.editor.owl.ui.action.SelectedOWLClassAction
This method is called at the end of a plugin life cycle, when the plugin needs to be removed from the system.
dispose() - Method in class org.protege.editor.owl.ui.action.SelectedOWLDataPropertyAction
This method is called at the end of a plugin life cycle, when the plugin needs to be removed from the system.
dispose() - Method in class org.protege.editor.owl.ui.action.SelectedOWLEntityAction
 
dispose() - Method in class org.protege.editor.owl.ui.action.SelectedOWLObjectPropertyAction
This method is called at the end of a plugin life cycle, when the plugin needs to be removed from the system.
dispose() - Method in class org.protege.editor.owl.ui.action.SplitDisjointClassesAction
 
dispose() - Method in class org.protege.editor.owl.ui.action.SplitSubClassAxiomsAction
 
dispose() - Method in class org.protege.editor.owl.ui.action.UndoAction
This method is called at the end of a plugin life cycle, when the plugin needs to be removed from the system.
dispose() - Method in class org.protege.editor.owl.ui.axiom.AxiomAnnotationPanel
 
dispose() - Method in class org.protege.editor.owl.ui.editor.AbstractRestrictionCreatorPanel
 
dispose() - Method in class org.protege.editor.owl.ui.editor.IRIFromEntityEditor
 
dispose() - Method in class org.protege.editor.owl.ui.editor.IRITextEditor
 
dispose() - Method in class org.protege.editor.owl.ui.editor.OWLAnnotationEditor
 
dispose() - Method in class org.protege.editor.owl.ui.editor.OWLAnnotationPropertyEditor
 
dispose() - Method in class org.protege.editor.owl.ui.editor.OWLAnonymousIndividualAnnotationValueEditor
 
dispose() - Method in class org.protege.editor.owl.ui.editor.OWLClassDescriptionEditor
 
dispose() - Method in class org.protege.editor.owl.ui.editor.OWLClassExpressionExpressionEditor
 
dispose() - Method in class org.protege.editor.owl.ui.editor.OWLClassExpressionSetEditor
 
dispose() - Method in class org.protege.editor.owl.ui.editor.OWLClassSelectorWrapper
 
dispose() - Method in class org.protege.editor.owl.ui.editor.OWLConstantEditor
 
dispose() - Method in class org.protege.editor.owl.ui.editor.OWLDataPropertyEditor
 
dispose() - Method in class org.protege.editor.owl.ui.editor.OWLDataPropertyRelationshipEditor
 
dispose() - Method in class org.protege.editor.owl.ui.editor.OWLDataPropertySetEditor
 
dispose() - Method in class org.protege.editor.owl.ui.editor.OWLDataRangeEditor
 
dispose() - Method in class org.protege.editor.owl.ui.editor.OWLGeneralAxiomEditor
 
dispose() - Method in class org.protege.editor.owl.ui.editor.OWLIndividualEditor
 
dispose() - Method in class org.protege.editor.owl.ui.editor.OWLIndividualSetEditor
 
dispose() - Method in interface org.protege.editor.owl.ui.editor.OWLObjectEditor
 
dispose() - Method in class org.protege.editor.owl.ui.editor.OWLObjectPropertyChainEditor
 
dispose() - Method in class org.protege.editor.owl.ui.editor.OWLObjectPropertyEditor
 
dispose() - Method in class org.protege.editor.owl.ui.editor.OWLObjectPropertyExpressionEditor
 
dispose() - Method in class org.protege.editor.owl.ui.editor.OWLObjectPropertyIndividualPairEditor
 
dispose() - Method in class org.protege.editor.owl.ui.editor.OWLObjectPropertySetEditor
 
dispose() - Method in class org.protege.editor.owl.ui.editor.OWLObjectPropertyTabbedSetEditor
 
dispose() - Method in class org.protege.editor.owl.ui.editor.OWLPropertySetEditor
 
dispose() - Method in class org.protege.editor.owl.ui.editor.SWRLRuleEditor
 
dispose() - Method in class org.protege.editor.owl.ui.explanation.ExplanationDialog
 
dispose() - Method in class org.protege.editor.owl.ui.explanation.ExplanationResult
 
dispose() - Method in class org.protege.editor.owl.ui.explanation.impl.BasicBlackboxExplanationService
 
dispose() - Method in class org.protege.editor.owl.ui.explanation.io.InconsistentOntologyManager
 
dispose() - Method in class org.protege.editor.owl.ui.explanation.io.ProtegeHeuristics
 
dispose() - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrame
 
dispose() - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSection
 
dispose() - Method in class org.protege.editor.owl.ui.frame.OWLEntityFrame
 
dispose() - Method in interface org.protege.editor.owl.ui.frame.OWLFrame
Disposes of the frame by cleaning up any resource and listeners used by the frame
dispose() - Method in interface org.protege.editor.owl.ui.frame.OWLFrameSection
 
dispose() - Method in class org.protege.editor.owl.ui.framelist.CreateClosureAxiomAction
 
dispose() - Method in class org.protege.editor.owl.ui.framelist.CreateNewEquivalentClassAction
 
dispose() - Method in class org.protege.editor.owl.ui.framelist.MoveAxiomsToOntologyAction
 
dispose() - Method in class org.protege.editor.owl.ui.framelist.OWLFrameList
 
dispose() - Method in class org.protege.editor.owl.ui.framelist.OWLFrameListPopupMenuAction
 
dispose() - Method in class org.protege.editor.owl.ui.framelist.PullIntoActiveOntologyAction
 
dispose() - Method in class org.protege.editor.owl.ui.framelist.SwitchToDefiningOntologyAction
 
dispose() - Method in class org.protege.editor.owl.ui.hierarchy.creation.CreateClassHierarchyWizard
 
dispose() - Method in class org.protege.editor.owl.ui.hierarchy.creation.PickRootClassPanel
 
dispose() - Method in class org.protege.editor.owl.ui.inference.ConfigureReasonerAction
 
dispose() - Method in class org.protege.editor.owl.ui.inference.DIGReasonerPreferencesPanel
 
dispose() - Method in class org.protege.editor.owl.ui.inference.DisplayedInferencesPreferencePanel
 
dispose() - Method in class org.protege.editor.owl.ui.inference.ExplainInconsistentOntologyAction
 
dispose() - Method in class org.protege.editor.owl.ui.inference.PrecomputeAction
This method is called at the end of a plugin life cycle, when the plugin needs to be removed from the system.
dispose() - Method in class org.protege.editor.owl.ui.inference.PrecomputePreferencesPanel
 
dispose() - Method in class org.protege.editor.owl.ui.inference.TabbedReasonerPreferencesPanel
 
dispose() - Method in class org.protege.editor.owl.ui.library.EditActiveOntologyLibraryAction
 
dispose() - Method in class org.protege.editor.owl.ui.library.EditOntologyLibraryAction
 
dispose() - Method in class org.protege.editor.owl.ui.library.OntologyLibraryPanel
 
dispose() - Method in class org.protege.editor.owl.ui.list.AbstractAnnotationsList
 
dispose() - Method in class org.protege.editor.owl.ui.navigation.OWLEntityNavigationMediator
 
dispose() - Method in class org.protege.editor.owl.ui.navigation.OWLEntityNavPanel
 
dispose() - Method in class org.protege.editor.owl.ui.ontology.imports.OntologyImportsList
 
dispose() - Method in class org.protege.editor.owl.ui.ontology.location.PhysicalLocationTableModel
 
dispose() - Method in class org.protege.editor.owl.ui.ontology.location.ShowOntologyLocationsAction
 
dispose() - Method in class org.protege.editor.owl.ui.ontology.OntologyPreferencesPanel
 
dispose() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.byprofile.MoveAxiomsByProfileKit
 
dispose() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.byprofile.ProfileSelectorPanel
 
dispose() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.byreference.MoveAxiomsByReferenceKit
 
dispose() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.byreference.SelectSignaturePanel
 
dispose() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.bytype.AxiomTypeSelectorPanel
 
dispose() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.bytype.MoveAxiomsByTypeKit
 
dispose() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.common.SignatureDependentSelectionPreviewPanel
 
dispose() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.MoveAxiomsKitConfigurationPanel
 
dispose() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.MoveAxiomsWizard
 
dispose() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.SelectAxiomsPanel
 
dispose() - Method in class org.protege.editor.owl.ui.OWLAxiomTypeFramePanel
 
dispose() - Method in class org.protege.editor.owl.ui.OWLObjectComparator
 
dispose() - Method in class org.protege.editor.owl.ui.OWLWorkspaceViewsTab
 
dispose() - Method in class org.protege.editor.owl.ui.preferences.AnnotationPreferencesPanel
 
dispose() - Method in class org.protege.editor.owl.ui.preferences.GeneralPreferencesPanel
 
dispose() - Method in class org.protege.editor.owl.ui.preferences.NewEntitiesPreferencesPanel
 
dispose() - Method in class org.protege.editor.owl.ui.preferences.SavePreferencesPanel
 
dispose() - Method in class org.protege.editor.owl.ui.renderer.AbstractOWLEntityRenderer
 
dispose() - Method in class org.protege.editor.owl.ui.renderer.AnnotationRendererPanel
 
dispose() - Method in class org.protege.editor.owl.ui.renderer.conf.RendererPreferencesPanel
 
dispose() - Method in class org.protege.editor.owl.ui.renderer.LinkedObjectComponentMediator
 
dispose() - Method in class org.protege.editor.owl.ui.renderer.menu.AbstractByRendererMenu
 
dispose() - Method in class org.protege.editor.owl.ui.renderer.menu.ConfigureRenderer
 
dispose() - Method in class org.protege.editor.owl.ui.renderer.menu.RenderByProperty
 
dispose() - Method in class org.protege.editor.owl.ui.SelectedOWLEntityList
 
dispose() - Method in class org.protege.editor.owl.ui.selector.AbstractSelectorPanel
 
dispose() - Method in class org.protege.editor.owl.ui.selector.OWLAnnotationPropertySelectorPanel
 
dispose() - Method in class org.protege.editor.owl.ui.selector.OWLClassSelectorPanel
 
dispose() - Method in class org.protege.editor.owl.ui.selector.OWLDataPropertySelectorPanel
 
dispose() - Method in class org.protege.editor.owl.ui.selector.OWLDataTypeSelectorPanel
 
dispose() - Method in class org.protege.editor.owl.ui.selector.OWLEntitySelectorPanel
 
dispose() - Method in class org.protege.editor.owl.ui.selector.OWLIndividualSelectorPanel
 
dispose() - Method in class org.protege.editor.owl.ui.selector.OWLObjectPropertySelectorPanel
 
dispose() - Method in class org.protege.editor.owl.ui.tree.OWLModelManagerTree
 
dispose() - Method in class org.protege.editor.owl.ui.tree.OWLObjectTree
 
dispose() - Method in class org.protege.editor.owl.ui.tree.OWLTreePreferencesPanel
 
dispose() - Method in interface org.protege.editor.owl.ui.util.OWLComponentFactory
 
dispose() - Method in class org.protege.editor.owl.ui.util.OWLComponentFactoryImpl
 
dispose() - Method in class org.protege.editor.owl.ui.view.AbstractOWLViewComponent
 
dispose() - Method in class org.protege.editor.owl.ui.view.ChangeListenerMediator
 
dispose() - Method in class uk.ac.man.cs.mig.coode.owlviz.command.ExportCommand
 
dispose() - Method in class uk.ac.man.cs.mig.coode.owlviz.command.HideAllClassesCommand
 
dispose() - Method in class uk.ac.man.cs.mig.coode.owlviz.command.HideClassCommand
 
dispose() - Method in class uk.ac.man.cs.mig.coode.owlviz.command.HideClassesPastRadiusCommand
 
dispose() - Method in class uk.ac.man.cs.mig.coode.owlviz.command.HideSubclassesCommand
 
dispose() - Method in class uk.ac.man.cs.mig.coode.owlviz.command.SetOptionsCommand
 
dispose() - Method in class uk.ac.man.cs.mig.coode.owlviz.command.ShowAllClassesCommand
 
dispose() - Method in class uk.ac.man.cs.mig.coode.owlviz.command.ShowClassCommand
 
dispose() - Method in class uk.ac.man.cs.mig.coode.owlviz.command.ShowSubclassesCommand
 
dispose() - Method in class uk.ac.man.cs.mig.coode.owlviz.command.ShowSuperclassesCommand
 
dispose() - Method in class uk.ac.man.cs.mig.coode.owlviz.command.ZoomInCommand
 
dispose() - Method in class uk.ac.man.cs.mig.coode.owlviz.command.ZoomOutCommand
 
dispose() - Method in class uk.ac.man.cs.mig.coode.owlviz.model.AbstractOWLClassGraphModel
 
dispose() - Method in class uk.ac.man.cs.mig.coode.owlviz.model.OWLOntologyImportsGraphModel
 
dispose() - Method in class uk.ac.man.cs.mig.coode.owlviz.model.OWLVizAxiomGraphModel
 
dispose() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.options.OWLVizPreferencesPane
 
dispose() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizGraphPanel
 
dispose() - Method in interface uk.ac.man.cs.mig.util.graph.model.GraphModel
Disposed of the graph model.
dispose() - Method in class uk.ac.man.cs.mig.util.graph.model.impl.DefaultGraphModel
 
disposeAction() - Method in class org.protege.editor.owl.ui.action.DeleteEntityAction
 
disposeAction() - Method in class org.protege.editor.owl.ui.action.RenameEntityAction
 
disposeAction() - Method in class org.protege.editor.owl.ui.action.SelectedOWLEntityAction
 
disposeAction() - Method in class org.protege.editor.owl.ui.action.ShowUsageAction
 
disposeOfEditorKit(EditorKit) - Method in class org.protege.editor.core.ProtegeManager
Closes an EditorKit.
disposeOfSection() - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSection
 
disposeOntologyView() - Method in class org.protege.editor.owl.ui.metrics.AxiomMetricsViewComponent
 
disposeOntologyView() - Method in class org.protege.editor.owl.ui.prefix.PrefixMapperView
 
disposeOntologyView() - Method in class org.protege.editor.owl.ui.view.AbstractActiveOntologyViewComponent
 
disposeOntologyView() - Method in class org.protege.editor.owl.ui.view.AnonymousClassesView
 
disposeOntologyView() - Method in class org.protege.editor.owl.ui.view.InferredAxiomsViewComponent
 
disposeOntologyView() - Method in class org.protege.editor.owl.ui.view.ontology.AbstractOntologyRenderingViewComponent
 
disposeOntologyView() - Method in class org.protege.editor.owl.ui.view.OWLGeneralAxiomsViewComponent
 
disposeOntologyView() - Method in class org.protege.editor.owl.ui.view.SWRLRulesViewComponent
 
disposeOWLView() - Method in class org.protege.editor.owl.ui.find.OWLEntityFinderViewComponent
 
disposeOWLView() - Method in class org.protege.editor.owl.ui.metrics.DLMetricsViewComponent
 
disposeOWLView() - Method in class org.protege.editor.owl.ui.ontology.ActiveOntologyView
 
disposeOWLView() - Method in class org.protege.editor.owl.ui.view.AbstractActiveOntologyViewComponent
 
disposeOWLView() - Method in class org.protege.editor.owl.ui.view.AbstractOWLSelectionViewComponent
This method is called at the end of a plugin life cycle, when the plugin needs to be removed from the system.
disposeOWLView() - Method in class org.protege.editor.owl.ui.view.AbstractOWLViewComponent
 
disposeOWLView() - Method in class org.protege.editor.owl.ui.view.ObjectSelectorViewComponent
 
disposeOWLView() - Method in class org.protege.editor.owl.ui.view.ontology.OWLImportsDeclarationsViewComponent
 
disposeOWLView() - Method in class org.protege.editor.owl.ui.view.ontology.OWLOntologyAnnotationViewComponent
 
disposeOWLView() - Method in class org.protege.editor.owl.ui.view.OWLAxiomAnnotationsView
 
disposeOWLView() - Method in class org.protege.editor.owl.ui.view.OWLEntityViewComponent
 
disposeOWLView() - Method in class org.protege.editor.owl.ui.view.SelectedEntityCardView
 
disposeOWLView() - Method in class org.protege.editor.owl.ui.view.SelectedObjectViewComponent
 
disposeOWLView() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizImportsViewComponent
 
disposeRenderer() - Method in class org.protege.editor.owl.ui.renderer.AbstractOWLEntityRenderer
 
disposeRenderer() - Method in class org.protege.editor.owl.ui.renderer.OWLEntityAnnotationValueRenderer
 
disposeRenderer() - Method in class org.protege.editor.owl.ui.renderer.OWLEntityQNameRenderer
 
disposeRenderer() - Method in class org.protege.editor.owl.ui.renderer.OWLEntityRendererImpl
 
disposeView() - Method in class org.protege.editor.owl.ui.OWLIndividualListComponent
 
disposeView() - Method in class org.protege.editor.owl.ui.view.AbstractOWLEntityHierarchyViewComponent
 
disposeView() - Method in class org.protege.editor.owl.ui.view.AbstractOWLPropertyViewComponent
 
disposeView() - Method in class org.protege.editor.owl.ui.view.AbstractOWLSelectionViewComponent
 
disposeView() - Method in class org.protege.editor.owl.ui.view.annotationproperty.OWLAnnotationPropertyAnnotationsViewComponent
 
disposeView() - Method in class org.protege.editor.owl.ui.view.annotationproperty.OWLAnnotationPropertyDescriptionViewComponent
 
disposeView() - Method in class org.protege.editor.owl.ui.view.annotationproperty.OWLAnnotationPropertyUsageViewComponent
 
disposeView() - Method in class org.protege.editor.owl.ui.view.cls.InferredSuperClassHierarchyViewComponent
 
disposeView() - Method in class org.protege.editor.owl.ui.view.cls.OWLClassAnnotationsViewComponent
 
disposeView() - Method in class org.protege.editor.owl.ui.view.cls.OWLClassDescriptionViewComponent
 
disposeView() - Method in class org.protege.editor.owl.ui.view.cls.OWLClassUsageViewComponent
 
disposeView() - Method in class org.protege.editor.owl.ui.view.cls.OWLDisjointClassesViewComponent
 
disposeView() - Method in class org.protege.editor.owl.ui.view.dataproperty.OWLDataPropertyAnnotationsViewComponent
 
disposeView() - Method in class org.protege.editor.owl.ui.view.dataproperty.OWLDataPropertyCharacteristicsViewComponent
 
disposeView() - Method in class org.protege.editor.owl.ui.view.dataproperty.OWLDataPropertyDescriptionViewComponent
 
disposeView() - Method in class org.protege.editor.owl.ui.view.dataproperty.OWLDataPropertyDomainsAndRangesViewComponent
 
disposeView() - Method in class org.protege.editor.owl.ui.view.dataproperty.OWLDataPropertyUsageViewComponent
 
disposeView() - Method in class org.protege.editor.owl.ui.view.datatype.OWLDataTypeAnnotationsViewComponent
 
disposeView() - Method in class org.protege.editor.owl.ui.view.datatype.OWLDataTypeDescriptionViewComponent
 
disposeView() - Method in class org.protege.editor.owl.ui.view.datatype.OWLDataTypeUsageViewComponent
 
disposeView() - Method in class org.protege.editor.owl.ui.view.datatype.OWLDataTypeViewComponent
 
disposeView() - Method in class org.protege.editor.owl.ui.view.individual.OWLIndividualAnnotationsViewComponent
 
disposeView() - Method in class org.protege.editor.owl.ui.view.individual.OWLIndividualDescriptionViewComponent
 
disposeView() - Method in class org.protege.editor.owl.ui.view.individual.OWLIndividualListViewComponent
 
disposeView() - Method in class org.protege.editor.owl.ui.view.individual.OWLIndividualPropertyAssertionsViewComponent
 
disposeView() - Method in class org.protege.editor.owl.ui.view.individual.OWLIndividualsByInferredTypeViewComponent
 
disposeView() - Method in class org.protege.editor.owl.ui.view.individual.OWLIndividualsByTypeViewComponent
 
disposeView() - Method in class org.protege.editor.owl.ui.view.individual.OWLIndividualUsageViewComponent
 
disposeView() - Method in class org.protege.editor.owl.ui.view.individual.OWLInferredMemberListViewComponent
 
disposeView() - Method in class org.protege.editor.owl.ui.view.individual.OWLMembersListViewComponent
 
disposeView() - Method in class org.protege.editor.owl.ui.view.ManchesterSyntaxFrameView
 
disposeView() - Method in class org.protege.editor.owl.ui.view.objectproperty.InferredObjectPropertyHierarchyViewComponent
 
disposeView() - Method in class org.protege.editor.owl.ui.view.objectproperty.OWLObjectPropertyAnnotationsViewComponent
 
disposeView() - Method in class org.protege.editor.owl.ui.view.objectproperty.OWLObjectPropertyCharacteristicsViewComponent
 
disposeView() - Method in class org.protege.editor.owl.ui.view.objectproperty.OWLObjectPropertyDescriptionViewComponent
 
disposeView() - Method in class org.protege.editor.owl.ui.view.objectproperty.OWLObjectPropertyDomainsAndRangesViewComponent
 
disposeView() - Method in class org.protege.editor.owl.ui.view.objectproperty.OWLObjectPropertyUsageViewComponent
 
disposeView() - Method in class org.protege.editor.owl.ui.view.OWLEntityUsageViewComponent
 
disposeView() - Method in class org.protege.ontograf.OntoGrafImportView
 
disposeView() - Method in class org.protege.ontograf.OntoGrafView
 
disposeView() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizAxiomView
 
disposeView() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizView
 
DLMetricsViewComponent - Class in org.protege.editor.owl.ui.metrics
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 03-Oct-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

DLMetricsViewComponent() - Constructor for class org.protege.editor.owl.ui.metrics.DLMetricsViewComponent
 
DLNameKeyPanel - Class in org.protege.editor.owl.ui.metrics
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 03-Oct-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

DLNameKeyPanel() - Constructor for class org.protege.editor.owl.ui.metrics.DLNameKeyPanel
 
DLNamePanel - Class in org.protege.editor.owl.ui.metrics
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 29-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

DLNamePanel() - Constructor for class org.protege.editor.owl.ui.metrics.DLNamePanel
 
doAction() - Method in class org.protege.ontograf.actions.ConfigTooltipsAction
 
doAction() - Method in class org.protege.ontograf.actions.ExportAsDotAction
 
doAction() - Method in class org.protege.ontograf.actions.ExportImageAction
 
doAction() - Method in class org.protege.ontograf.actions.OpenGraphAction
 
doAction() - Method in class org.protege.ontograf.actions.PinTooltipsAction
 
doAction() - Method in class org.protege.ontograf.actions.SaveGraphAction
 
DOC_PROPERTY_NAME - Static variable in class org.protege.editor.core.update.PluginInfoDocument
 
doClose(Workspace) - Method in class org.protege.editor.core.ui.workspace.WorkspaceManager
 
doExport(OutputStream, ExportFormat) - Method in class uk.ac.man.cs.mig.coode.owlviz.command.ExportCommand
Exports the graph in the specified format to the specified export stream.
dofurtherCreateSteps(OWLIndividual) - Method in class org.protege.editor.owl.ui.view.individual.OWLIndividualListViewComponent
 
dofurtherCreateSteps(OWLIndividual) - Method in class org.protege.editor.owl.ui.view.individual.OWLMembersListViewComponent
 
doLayout() - Method in class org.protege.editor.core.ui.util.CheckTable
 
Done() - Method in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.SimpleCharStream
 
DOT_PATH - Static variable in class uk.ac.man.cs.mig.coode.owlviz.ui.options.OWLVizProperties
Deprecated. The path to the DOT application.
DOT_PATH_PROPERTIES_KEY - Static variable in class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizView
 
DotExportFormat - Class in uk.ac.man.cs.mig.coode.owlviz.export
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: May 27, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

DotExportFormat(OWLModelManager) - Constructor for class uk.ac.man.cs.mig.coode.owlviz.export.DotExportFormat
 
DotGraphLayoutEngine - Class in uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Jan 16, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

DotGraphLayoutEngine() - Constructor for class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.DotGraphLayoutEngine
 
DotLayoutEngineProperties - Class in uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Sep 19, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

DotLayoutEngineProperties() - Constructor for class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.DotLayoutEngineProperties
 
DotOutputGraphRenderer - Class in uk.ac.man.cs.mig.util.graph.outputrenderer.impl
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Jan 16, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

DotOutputGraphRenderer(NodeLabelRenderer, EdgeLabelRenderer) - Constructor for class uk.ac.man.cs.mig.util.graph.outputrenderer.impl.DotOutputGraphRenderer
 
DotParameterSetter - Class in uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: May 7, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

The DotParameterSetter sets the various attributes of a Graph and it's Nodes and Edges, using attribute/value String pairs (that come from a dot file).

DotParameterSetter() - Constructor for class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.DotParameterSetter
 
DotParser - Class in uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser
 
DotParser(InputStream) - Constructor for class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.DotParser
 
DotParser(InputStream, String) - Constructor for class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.DotParser
 
DotParser(Reader) - Constructor for class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.DotParser
 
DotParser(DotParserTokenManager) - Constructor for class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.DotParser
 
DotParserConstants - Interface in uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser
 
DotParserTokenManager - Class in uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser
 
DotParserTokenManager(SimpleCharStream) - Constructor for class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.DotParserTokenManager
 
DotParserTokenManager(SimpleCharStream, int) - Constructor for class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.DotParserTokenManager
 
DotPreParser - Class in uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: May 18, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

DotPreParser() - Constructor for class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.DotPreParser
 
DotProcess - Class in uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Jan 16, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

A wrapper for a native dot process.

DotProcess() - Constructor for class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.DotProcess
Contructs a DotProcess, and starts the native dot process.
DotProcessException - Exception in uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Mar 26, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

DotProcessException(String, Throwable) - Constructor for exception uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.DotProcessException
 
DotSubGraphOutputRenderer - Class in uk.ac.man.cs.mig.coode.owlviz.ui.renderer
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Apr 2, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

This renderer is similar to the default renderer, except it is specific to OWLClasses.

DotSubGraphOutputRenderer(OWLModelManager, NodeLabelRenderer, EdgeLabelRenderer) - Constructor for class uk.ac.man.cs.mig.coode.owlviz.ui.renderer.DotSubGraphOutputRenderer
 
DotSubGraphOutputRenderer(OWLModelManager) - Constructor for class uk.ac.man.cs.mig.coode.owlviz.ui.renderer.DotSubGraphOutputRenderer
 
DOWNLOAD_PROPERTY_NAME - Static variable in class org.protege.editor.core.update.PluginInfoDocument
 
dragEnter(DropTargetDragEvent) - Method in class org.protege.editor.owl.ui.framelist.OWLFrameList
 
dragEnter(DropTargetDragEvent) - Method in class org.protege.editor.owl.ui.table.OWLObjectDropTargetListener
 
dragEnter(DropTargetDragEvent) - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizView
 
dragExit(DropTargetEvent) - Method in class org.protege.editor.owl.ui.framelist.OWLFrameList
 
dragExit(DropTargetEvent) - Method in class org.protege.editor.owl.ui.table.OWLObjectDropTargetListener
 
dragExit(DropTargetEvent) - Method in class org.protege.editor.owl.ui.transfer.OWLObjectTreeDropTargetListener
 
dragExit(DropTargetEvent) - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizView
 
dragGestureRecognized(DragGestureEvent) - Method in class org.protege.editor.owl.ui.transfer.OWLObjectDragGestureListener
 
dragOver(DropTargetDragEvent) - Method in class org.protege.editor.owl.ui.framelist.OWLFrameList
 
dragOver(DropTargetDragEvent) - Method in class org.protege.editor.owl.ui.table.OWLObjectDropTargetListener
 
dragOver(DropTargetDragEvent) - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizView
 
draw(Graphics2D, boolean, boolean, boolean, boolean) - Method in class uk.ac.man.cs.mig.util.graph.ui.GraphView
Can be called to draw the GraphView onto the specified Graphics context.
draw(Graphics2D, boolean, boolean, boolean, boolean) - Method in class uk.ac.man.cs.mig.util.graph.ui.impl.DefaultGraphView
 
drawArrows(Graphics2D, Shape, Object) - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.renderer.OWLClsNodeRenderer
 
drawArrows(Graphics2D, Shape, Object) - Method in class uk.ac.man.cs.mig.util.graph.renderer.impl.DefaultNodeRenderer
 
drawThumbnail(Graphics2D) - Method in class uk.ac.man.cs.mig.util.graph.ui.GraphComponent
The main view should draw itself on to the graphics context provided, to produce a representation of the main view in the thumbnail view.
drawThumbnail(Graphics2D) - Method in interface uk.ac.man.cs.mig.util.graph.ui.ThumbnailViewSource
The main view should draw itself on to the graphics context provided, to produce a representation of the main view in the thumbnail view.
drop(DropTargetDropEvent) - Method in class org.protege.editor.owl.ui.framelist.OWLFrameList
 
drop(DropTargetDropEvent) - Method in class org.protege.editor.owl.ui.table.OWLObjectDropTargetListener
 
drop(DropTargetDropEvent) - Method in class org.protege.editor.owl.ui.transfer.OWLObjectTreeDropTargetListener
 
drop(DropTargetDropEvent) - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizView
 
dropActionChanged(DropTargetDragEvent) - Method in class org.protege.editor.owl.ui.framelist.OWLFrameList
 
dropActionChanged(DropTargetDragEvent) - Method in class org.protege.editor.owl.ui.table.OWLObjectDropTargetListener
 
dropActionChanged(DropTargetDragEvent) - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizView
 
dropObjects(List<OWLObject>) - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSection
 
dropObjects(List<OWLObject>) - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSectionRow
 
dropObjects(List<OWLObject>) - Method in class org.protege.editor.owl.ui.frame.annotationproperty.OWLAnnotationPropertyDomainFrameSection
 
dropObjects(List<OWLObject>) - Method in class org.protege.editor.owl.ui.frame.annotationproperty.OWLAnnotationPropertyRangeFrameSection
 
dropObjects(List<OWLObject>) - Method in class org.protege.editor.owl.ui.frame.annotationproperty.OWLSubAnnotationPropertyFrameSection
 
dropObjects(List<OWLObject>) - Method in class org.protege.editor.owl.ui.frame.cls.OWLClassAssertionAxiomMembersSection
 
dropObjects(List<OWLObject>) - Method in class org.protege.editor.owl.ui.frame.cls.OWLDisjointClassesAxiomFrameSection
 
dropObjects(List<OWLObject>) - Method in class org.protege.editor.owl.ui.frame.cls.OWLEquivalentClassesAxiomFrameSection
 
dropObjects(List<OWLObject>) - Method in class org.protege.editor.owl.ui.frame.cls.OWLSubClassAxiomFrameSection
 
dropObjects(List<OWLObject>) - Method in class org.protege.editor.owl.ui.frame.individual.OWLClassAssertionAxiomTypeFrameSection
 
dropObjects(List<OWLObject>) - Method in class org.protege.editor.owl.ui.frame.objectproperty.OWLObjectPropertyRangeFrameSection
 
dropObjects(List<OWLObject>) - Method in class org.protege.editor.owl.ui.frame.OWLAnnotationFrameSection
 
dropObjects(List<OWLObject>) - Method in interface org.protege.editor.owl.ui.frame.OWLFrameObject
 
dropObjects(List<OWLObject>) - Method in class org.protege.editor.owl.ui.frame.property.AbstractPropertyDomainFrameSection
 
dropOWLObjects(List<OWLObject>, Point, int) - Method in interface org.protege.editor.owl.ui.transfer.OWLObjectDropTarget
 
dropOWLObjects(List<OWLObject>, Point, int) - Method in class org.protege.editor.owl.ui.tree.OWLObjectTree
 
dumpWarningForAllListeners(Logger, Level, String) - Method in class org.protege.editor.owl.model.util.ListenerManager
 
dumpWarningForListener(L, Logger, Level, String) - Method in class org.protege.editor.owl.model.util.ListenerManager
 
DUPLICATE_SCHEME - Static variable in class org.protege.editor.owl.model.library.CatalogEntryManager
 
DuplicateSelectedClassAction - Class in org.protege.editor.owl.ui.action
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 19-Sep-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

DuplicateSelectedClassAction() - Constructor for class org.protege.editor.owl.ui.action.DuplicateSelectedClassAction
 

E

Edge - Class in org.protege.editor.owl.model.hierarchy.tabbed
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 16-Jul-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

Edge(String, String) - Constructor for class org.protege.editor.owl.model.hierarchy.tabbed.Edge
 
Edge - Interface in uk.ac.man.cs.mig.util.graph.graph
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Dec 27, 2003

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

The interface for Edges contained in a Graph.
EDGE_BRIGHTNESS - Static variable in class uk.ac.man.cs.mig.coode.owlviz.ui.options.OWLVizProperties
Deprecated. A String representation of a double valuet that represents the brightness of the edges in the graph.
EDGE_FACTORY_PROPERTY - Static variable in interface uk.ac.man.cs.mig.util.graph.controller.Controller
 
EDGE_LABEL_RENDERER_PROPERTY - Static variable in interface uk.ac.man.cs.mig.util.graph.controller.Controller
 
EDGE_RENDERER_PROPERTY - Static variable in interface uk.ac.man.cs.mig.util.graph.controller.Controller
 
EdgeFactory - Interface in uk.ac.man.cs.mig.util.graph.factory
User: matthewhorridge The Univeristy Of Manchester Medical Informatics Group Date: Dec 27, 2003
matthew.horridge@cs.man.ac.uk www.cs.man.ac.uk/~horridgm
Defines the interface required to create Edges.
EdgeLabelRenderer - Interface in uk.ac.man.cs.mig.util.graph.renderer
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Feb 17, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

EDGEOP - Static variable in interface uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.DotParserConstants
 
EdgeRenderer - Interface in uk.ac.man.cs.mig.util.graph.renderer
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Dec 29, 2003

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

The interface for a renderer that paints edges in the graph.
EditActiveOntologyLibraryAction - Class in org.protege.editor.owl.ui.library
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 24-Aug-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

EditActiveOntologyLibraryAction() - Constructor for class org.protege.editor.owl.ui.library.EditActiveOntologyLibraryAction
 
editFile(String) - Method in class org.protege.editor.core.platform.apple.AbstractAppleApplicationWrapper
 
editFile(String) - Method in class org.protege.editor.core.platform.apple.ProtegeAppleApplication
 
editingStopped(ChangeEvent) - Method in class org.protege.editor.owl.ui.prefix.PrefixMapperTable
 
EditOntologyLibraryAction - Class in org.protege.editor.owl.ui.library
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 24-Aug-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

EditOntologyLibraryAction() - Constructor for class org.protege.editor.owl.ui.library.EditOntologyLibraryAction
 
editor - Variable in class org.protege.editor.owl.ui.editor.OWLObjectPropertyChainEditor
 
EDITOR_KIT_FACTORY_ID - Static variable in class org.protege.editor.core.editorkit.EditorKitDescriptor
 
EDITOR_KIT_PARAM - Static variable in class org.protege.editor.core.OntologyBuilderPlugin
 
EDITOR_KIT_PARAM_NAME - Static variable in class org.protege.editor.core.plugin.PluginProperties
This is the name of the clsdescriptioneditor kit Id parameter, which is a "standard" parameter.
EditorKit - Interface in org.protege.editor.core.editorkit
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Mar 15, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

The EditorKit provides a connection between some kind of "ontology model" (or knowledgebase) and a UI for that model/knowledgebase.

EditorKitDescriptor - Class in org.protege.editor.core.editorkit
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 25-May-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

EditorKitDescriptor(String, EditorKitFactory) - Constructor for class org.protege.editor.core.editorkit.EditorKitDescriptor
 
EditorKitExtensionMatcher - Class in org.protege.editor.core.plugin
 
EditorKitExtensionMatcher(EditorKit) - Constructor for class org.protege.editor.core.plugin.EditorKitExtensionMatcher
 
EditorKitFactory - Interface in org.protege.editor.core.editorkit
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Mar 16, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

EditorKit factories are responsible for creating clsdescriptioneditor kits.

EditorKitFactoryPlugin - Class in org.protege.editor.core.editorkit
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Mar 18, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

An EditorKitFactoryPlugin encapsulates details of an EditorKitFactory plugin.

EditorKitFactoryPlugin(IExtension) - Constructor for class org.protege.editor.core.editorkit.EditorKitFactoryPlugin
 
EditorKitFactoryPluginLoader - Class in org.protege.editor.core.editorkit
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Mar 18, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

EditorKitFactoryPluginLoader() - Constructor for class org.protege.editor.core.editorkit.EditorKitFactoryPluginLoader
 
EditorKitHook - Class in org.protege.editor.core.editorkit.plugin
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Oct 15, 2008

A plugin that gets initialised when the editor kit has been created.

EditorKitHook() - Constructor for class org.protege.editor.core.editorkit.plugin.EditorKitHook
 
EditorKitHookPlugin - Interface in org.protege.editor.core.editorkit.plugin
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Oct 15, 2008

EditorKitHookPluginImpl - Class in org.protege.editor.core.editorkit.plugin
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Oct 15, 2008

EditorKitHookPluginImpl(IExtension, EditorKit) - Constructor for class org.protege.editor.core.editorkit.plugin.EditorKitHookPluginImpl
 
EditorKitHookPluginLoader - Class in org.protege.editor.core.editorkit.plugin
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Oct 15, 2008

EditorKitHookPluginLoader(EditorKit) - Constructor for class org.protege.editor.core.editorkit.plugin.EditorKitHookPluginLoader
 
EditorKitManager - Class in org.protege.editor.core.editorkit
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Mar 15, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

EditorKitManager() - Constructor for class org.protege.editor.core.editorkit.EditorKitManager
 
editURI(URI) - Method in class org.protege.editor.core.ProtegeApplication
 
EditUriAction - Class in org.protege.editor.owl.ui.library
 
EditUriAction(JTree, TreePath, File) - Constructor for class org.protege.editor.owl.ui.library.EditUriAction
 
elideText(String, int) - Method in class org.protege.ontograf.ui.FrameTooltipNode
Restricts the number of characters in the text node.
EllipticalNode - Class in uk.ac.man.cs.mig.util.graph.graph.impl
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Jan 15, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

EllipticalNode(Object) - Constructor for class uk.ac.man.cs.mig.util.graph.graph.impl.EllipticalNode
Constructs a Node that represents the specified object.
ENABLE_TEMP_DIRECTORIES_KEY - Static variable in class org.protege.editor.core.ui.util.UIUtil
 
enable_tracing() - Method in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.DotParser
 
endColumn - Variable in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.Token
beginLine and beginColumn describe the position of the first character of this token; endLine and endColumn describe the position of the last character of this token.
endLine - Variable in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.Token
beginLine and beginColumn describe the position of the first character of this token; endLine and endColumn describe the position of the last character of this token.
endModel() - Method in class org.protege.editor.owl.model.repository.extractors.RdfExtractorConsumer
 
ENDS_WITH - Static variable in class org.protege.ontograf.common.GraphController
 
endTask(BackgroundTask) - Method in class org.protege.editor.core.ui.progress.BackgroundTaskLabel
 
endTask(BackgroundTask) - Method in interface org.protege.editor.core.ui.progress.BackgroundTaskListener
 
endTask(BackgroundTask) - Method in class org.protege.editor.core.ui.progress.BackgroundTaskManager
 
ensureCatalogExists(File) - Method in class org.protege.editor.owl.model.library.OntologyCatalogManager
 
ENTITIES_CHANGED - Static variable in class org.protege.editor.owl.model.selection.axioms.EntityReferencingAxiomsStrategy
 
EntityCreationPreferences - Class in org.protege.editor.owl.model.entity
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Jul 24, 2008

EntityCreationPreferences() - Constructor for class org.protege.editor.owl.model.entity.EntityCreationPreferences
 
EntityFindAndReplaceURIRenamer - Class in org.protege.editor.owl.model.refactor
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Jul 3, 2008

Cannot use an OWLEntityRenamer directly because multiple entities may be referenced by the same axiom

EntityFindAndReplaceURIRenamer(OWLOntologyManager, Collection<OWLEntity>, Set<OWLOntology>, String, String) - Constructor for class org.protege.editor.owl.model.refactor.EntityFindAndReplaceURIRenamer
 
EntityFinderField - Class in org.protege.editor.owl.ui.find
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 16-May-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

EntityFinderField(JComponent, OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.find.EntityFinderField
 
EntityReferencingAxiomsStrategy<O extends org.semanticweb.owlapi.model.OWLEntity> - Class in org.protege.editor.owl.model.selection.axioms
User: nickdrummond Date: May 21, 2008
EntityReferencingAxiomsStrategy() - Constructor for class org.protege.editor.owl.model.selection.axioms.EntityReferencingAxiomsStrategy
 
ENUM_NAME - Static variable in class uk.ac.man.cs.mig.coode.owlviz.ui.renderer.OWLClsNodeRenderer
 
EOF - Static variable in interface uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.DotParserConstants
 
eol - Variable in exception uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.ParseException
The end of line string for this machine.
equals(Object) - Method in class org.protege.editor.core.editorkit.EditorKitDescriptor
 
equals(Object) - Method in class uk.ac.man.cs.mig.util.graph.graph.impl.DefaultEdge
 
equals(Object) - Method in class uk.ac.man.cs.mig.util.graph.graph.impl.DefaultGraph.EdgeKey
 
equals(Object) - Method in class uk.ac.man.cs.mig.util.graph.graph.impl.DefaultNode
Implementation of equals two Nodes are considered equal if the represent the same object.
EQUALS - Static variable in interface uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.DotParserConstants
 
EQUIVALENT_CLASS_ALL_VALUES - Static variable in class org.protege.ontograf.common.ProtegeGraphModel
 
EQUIVALENT_CLASS_SOME_VALUE_OF - Static variable in class org.protege.ontograf.common.ProtegeGraphModel
 
ERROR_RETURN_CODE - Static variable in class org.protege.editor.core.ui.wizard.Wizard
Indicates that the dialog closed due to an internal error.
ErrorExplainer - Class in org.protege.editor.core.ui.error
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Aug 29, 2008

This class tries to provide a human understandable explanation for a given exception.

ErrorExplainer() - Constructor for class org.protege.editor.core.ui.error.ErrorExplainer
 
ErrorExplainer.ErrorExplanation<O extends Throwable> - Class in org.protege.editor.core.ui.error
 
ErrorExplainer.ErrorExplanation(O, String) - Constructor for class org.protege.editor.core.ui.error.ErrorExplainer.ErrorExplanation
 
ErrorExplainer.ErrorExplanationFactory<O extends Throwable> - Interface in org.protege.editor.core.ui.error
The factory can be implemented in any way the coder wishes.
ErrorExplainer.ParseErrorExplanation<O extends Throwable> - Class in org.protege.editor.core.ui.error
 
ErrorExplainer.ParseErrorExplanation(O, String, int, int) - Constructor for class org.protege.editor.core.ui.error.ErrorExplainer.ParseErrorExplanation
 
ErrorLog - Class in org.protege.editor.core.ui.error
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 28-Feb-2007

ErrorLog() - Constructor for class org.protege.editor.core.ui.error.ErrorLog
 
ErrorLog.ErrorLogEntry - Class in org.protege.editor.core.ui.error
 
ErrorLog.ErrorLogEntry(Throwable) - Constructor for class org.protege.editor.core.ui.error.ErrorLog.ErrorLogEntry
 
errorLogCleared(ErrorLog) - Method in interface org.protege.editor.core.ui.error.ErrorLogListener
 
errorLogged(ErrorLog) - Method in interface org.protege.editor.core.ui.error.ErrorLogListener
 
ErrorLogListener - Interface in org.protege.editor.core.ui.error
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 28-Feb-2007

ErrorLogPanel - Class in org.protege.editor.core.ui.error
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 28-Feb-2007

ErrorLogPanel(ErrorLog, SendErrorReportHandler) - Constructor for class org.protege.editor.core.ui.error.ErrorLogPanel
 
errorMessageComponent - Variable in class org.protege.editor.owl.ui.error.ErrorPanel
 
ErrorNotificationLabel - Class in org.protege.editor.core.ui.error
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 28-Feb-2007

ErrorNotificationLabel(ErrorLog, SendErrorReportHandler) - Constructor for class org.protege.editor.core.ui.error.ErrorNotificationLabel
 
ErrorPanel<O extends Throwable> - Class in org.protege.editor.owl.ui.error
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Dec 11, 2008

ErrorPanel(ErrorExplainer.ErrorExplanation<O>, URI) - Constructor for class org.protege.editor.owl.ui.error.ErrorPanel
 
escape(String) - Method in class org.protege.editor.owl.ui.renderer.OWLEntityAnnotationValueRenderer
 
EventType - Enum in org.protege.editor.owl.model.event
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 05-Jul-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

EXACT_MATCH - Static variable in class org.protege.ontograf.common.GraphController
 
executeTask(ReasonerPreferences.OptionalInferenceTask, Runnable) - Method in class org.protege.editor.owl.model.inference.DisplayedInferencePreferences
 
executeTask(ReasonerPreferences.OptionalInferenceTask, Runnable) - Method in class org.protege.editor.owl.model.inference.ReasonerPreferences
 
expandAll() - Method in class org.protege.editor.owl.ui.tree.OWLObjectTree
 
ExpandBuff(boolean) - Method in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.SimpleCharStream
 
expandNode(GraphNode) - Method in class org.protege.ontograf.common.ProtegeGraphModel
Expands the given graphNode by showing it's neighborhood and keeping existing nodes.
expandNode(GraphNode, String) - Method in class org.protege.ontograf.common.ProtegeGraphModel
Expands the given graphNode based on a specific arcType and keeping existing nodes.
expectedTokenSequences - Variable in exception uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.ParseException
Each entry in this array is an array of integers.
explain(OWLAxiom) - Method in class org.protege.editor.owl.ui.explanation.ExplanationService
 
explain(OWLAxiom) - Method in class org.protege.editor.owl.ui.explanation.impl.BasicBlackboxExplanationService
 
EXPLAIN - Static variable in class org.protege.editor.owl.ui.explanation.io.InconsistentOntologyManager
 
explain() - Method in class org.protege.editor.owl.ui.explanation.io.InconsistentOntologyManager
 
explain(OWLOntology) - Method in interface org.protege.editor.owl.ui.explanation.io.InconsistentOntologyPluginInstance
 
explain(OWLOntology) - Method in class org.protege.editor.owl.ui.explanation.io.ProtegeHeuristics
 
ExplainButton - Class in org.protege.editor.owl.ui.framelist
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 01-Mar-2007

ExplainButton(ActionListener) - Constructor for class org.protege.editor.owl.ui.framelist.ExplainButton
 
ExplainInconsistentOntologyAction - Class in org.protege.editor.owl.ui.inference
 
ExplainInconsistentOntologyAction() - Constructor for class org.protege.editor.owl.ui.inference.ExplainInconsistentOntologyAction
 
ExplanationDialog - Class in org.protege.editor.owl.ui.explanation
 
ExplanationDialog(Frame, ExplanationManager, OWLAxiom) - Constructor for class org.protege.editor.owl.ui.explanation.ExplanationDialog
 
ExplanationManager - Class in org.protege.editor.owl.ui.explanation
 
ExplanationManager(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.explanation.ExplanationManager
 
ExplanationPlugin - Class in org.protege.editor.owl.ui.explanation
 
ExplanationPlugin(OWLEditorKit, IExtension) - Constructor for class org.protege.editor.owl.ui.explanation.ExplanationPlugin
 
ExplanationPluginLoader - Class in org.protege.editor.owl.ui.explanation
 
ExplanationPluginLoader(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.explanation.ExplanationPluginLoader
 
ExplanationResult - Class in org.protege.editor.owl.ui.explanation
 
ExplanationResult() - Constructor for class org.protege.editor.owl.ui.explanation.ExplanationResult
 
ExplanationService - Class in org.protege.editor.owl.ui.explanation
 
ExplanationService() - Constructor for class org.protege.editor.owl.ui.explanation.ExplanationService
 
export() - Method in class uk.ac.man.cs.mig.coode.owlviz.command.ExportCommand
Pops up the export Wizard, and gathers data.
export(Controller, OutputStream) - Method in class uk.ac.man.cs.mig.coode.owlviz.export.DotExportFormat
Exports the graphics to the specified file.
export(Controller, OutputStream) - Method in interface uk.ac.man.cs.mig.util.graph.export.ExportFormat
Exports the graphics to the specified file.
export(Controller, OutputStream) - Method in class uk.ac.man.cs.mig.util.graph.export.impl.AbstractRasterFormat
Exports the graphics to the specified file.
export(Controller, OutputStream) - Method in class uk.ac.man.cs.mig.util.graph.export.impl.SVGExportFormat
Exports the graphics to the specified file.
EXPORT_ICON - Static variable in class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizIcons
 
ExportAsDotAction - Class in org.protege.ontograf.actions
 
ExportAsDotAction(Component, GraphController) - Constructor for class org.protege.ontograf.actions.ExportAsDotAction
 
ExportCancelledException - Exception in org.protege.editor.owl.ui.action.export.inferred
 
ExportCancelledException() - Constructor for exception org.protege.editor.owl.ui.action.export.inferred.ExportCancelledException
 
ExportCommand - Class in uk.ac.man.cs.mig.coode.owlviz.command
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Feb 20, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

ExportCommand(OWLVizViewI) - Constructor for class uk.ac.man.cs.mig.coode.owlviz.command.ExportCommand
 
ExportFormat - Interface in uk.ac.man.cs.mig.util.graph.export
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Feb 20, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

ExportFormatManager - Class in uk.ac.man.cs.mig.util.graph.export
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Feb 20, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

A Singleton class that is used to store and manage various export formats.

ExportFormatManager() - Constructor for class uk.ac.man.cs.mig.util.graph.export.ExportFormatManager
 
ExportImageAction - Class in org.protege.ontograf.actions
 
ExportImageAction(Component, PCanvas) - Constructor for class org.protege.ontograf.actions.ExportImageAction
 
ExportInferredOntologyAction - Class in org.protege.editor.owl.ui.action.export.inferred
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 09-Aug-2007

ExportInferredOntologyAction() - Constructor for class org.protege.editor.owl.ui.action.export.inferred.ExportInferredOntologyAction
 
ExportInferredOntologyIDPanel - Class in org.protege.editor.owl.ui.action.export.inferred
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 09-Aug-2007

ExportInferredOntologyIDPanel(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.action.export.inferred.ExportInferredOntologyIDPanel
 
ExportInferredOntologyIncludeAssertedAxiomsPanel - Class in org.protege.editor.owl.ui.action.export.inferred
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 15-Aug-2007

ExportInferredOntologyIncludeAssertedAxiomsPanel(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.action.export.inferred.ExportInferredOntologyIncludeAssertedAxiomsPanel
 
ExportInferredOntologyPanel - Class in org.protege.editor.owl.ui.action.export.inferred
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 09-Aug-2007

ExportInferredOntologyPanel() - Constructor for class org.protege.editor.owl.ui.action.export.inferred.ExportInferredOntologyPanel
 
ExportInferredOntologyWizard - Class in org.protege.editor.owl.ui.action.export.inferred
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 09-Aug-2007

ExportInferredOntologyWizard(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.action.export.inferred.ExportInferredOntologyWizard
 
ExportInferredOntologyWizardSelectAxiomsPanel - Class in org.protege.editor.owl.ui.action.export.inferred
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 09-Aug-2007

ExportInferredOntologyWizardSelectAxiomsPanel(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.action.export.inferred.ExportInferredOntologyWizardSelectAxiomsPanel
 
ExportTabAction - Class in org.protege.editor.core.ui.workspace.tabs
 
ExportTabAction() - Constructor for class org.protege.editor.core.ui.workspace.tabs.ExportTabAction
 
ExpressionEditor<O> - Class in org.protege.editor.owl.ui.clsdescriptioneditor
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: May 4, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

An editor that can be used to edit text containing class expressions.

ExpressionEditor(OWLEditorKit, OWLExpressionChecker<O>) - Constructor for class org.protege.editor.owl.ui.clsdescriptioneditor.ExpressionEditor
 
ExpressionEditorPreferences - Class in org.protege.editor.owl.ui.clsdescriptioneditor
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Nov 21, 2008

ExpressivityIcons - Class in org.protege.editor.owl.ui.metrics
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 29-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

ExpressivityIcons() - Constructor for class org.protege.editor.owl.ui.metrics.ExpressivityIcons
 
extension - Variable in class org.protege.editor.core.plugin.AbstractProtegePlugin
 
EXTENSION_DOCUMENTATION - Static variable in class org.protege.editor.core.plugin.JPFUtil
 
EXTENSION_POINT_ID - Static variable in interface org.protege.editor.core.editorkit.EditorKitFactory
The EditorKitFactory is a type of plugin, and therefore type of extension point to the protege application.
EXTENSION_POINT_ID - Static variable in interface org.protege.editor.core.editorkit.plugin.EditorKitHookPlugin
 
EXTENSION_POINT_ID - Static variable in interface org.protege.editor.core.OntologyRepositoryFactoryPlugin
 
EXTENSION_POINT_ID - Static variable in class org.protege.editor.core.ui.action.ToolBarActionPluginJPFImpl
 
EXTENSION_POINT_ID - Static variable in class org.protege.editor.core.ui.menu.MenuActionPluginJPFImpl
 
EXTENSION_POINT_ID - Static variable in class org.protege.editor.core.ui.view.ViewActionPluginJPFImpl
 
ExtensionInstantiator<E> - Class in org.protege.editor.core.plugin
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Mar 17, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

A utility class that creates instances of a plugin based on its Extension.

ExtensionInstantiator(IExtension) - Constructor for class org.protege.editor.core.plugin.ExtensionInstantiator
Creates a plugin instantiator that will create instances of a plugin identified by the specified extension.

F

FILE_KEY - Static variable in class org.protege.editor.owl.model.library.folder.FolderGroupManager
 
FILE_MENU_NAME - Static variable in class org.protege.editor.core.ui.workspace.Workspace
 
FILE_PREFERENCES_KEY - Static variable in class org.protege.editor.core.ui.util.UIUtil
 
FILE_ROOT - Static variable in class uk.ac.man.cs.mig.coode.owlviz.ui.options.OWLVizProperties
Deprecated.  
FileManager - Class in org.protege.editor.core
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 13-Sep-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

FileManager() - Constructor for class org.protege.editor.core.FileManager
 
FilePathPanel - Class in org.protege.editor.core.ui.util
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 12-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

FilePathPanel(String, Set<String>) - Constructor for class org.protege.editor.core.ui.util.FilePathPanel
 
FileURIPanel - Class in org.protege.editor.core.ui.util
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 16-May-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

FileURIPanel(Set<String>) - Constructor for class org.protege.editor.core.ui.util.FileURIPanel
 
FileUtils - Class in org.protege.editor.core
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 24-Aug-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

FileUtils() - Constructor for class org.protege.editor.core.FileUtils
 
FillBuff() - Method in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.SimpleCharStream
 
fillers - Variable in class org.protege.editor.owl.model.util.ObjectSomeValuesFromFillerExtractor
 
fillLog() - Method in class org.protege.editor.core.ui.error.ErrorLogPanel
 
fillLog() - Method in class org.protege.editor.core.ui.progress.BackgroundTaskListPanel
 
FilteredAxiomsModel - Interface in org.protege.editor.owl.ui.ontology.wizard.move
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Dec 4, 2008

FilteringOWLSelectionModelListener - Class in org.protege.editor.owl.model.selection
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 08-Feb-2007

FilteringOWLSelectionModelListener(OWLEditorKit) - Constructor for class org.protege.editor.owl.model.selection.FilteringOWLSelectionModelListener
 
find(String) - Method in class org.protege.editor.owl.ui.OWLIndividualListComponent
 
find(String) - Method in class org.protege.editor.owl.ui.view.AbstractOWLPropertyHierarchyViewComponent
 
find(String) - Method in class org.protege.editor.owl.ui.view.annotationproperty.OWLAnnotationPropertyHierarchyViewComponent
 
find(String) - Method in class org.protege.editor.owl.ui.view.cls.AbstractOWLClassHierarchyViewComponent
 
find(String) - Method in class org.protege.editor.owl.ui.view.cls.InferredOWLClassHierarchyViewComponent
 
find(String) - Method in class org.protege.editor.owl.ui.view.datatype.OWLDataTypeViewComponent
 
find(String) - Method in interface org.protege.editor.owl.ui.view.Findable
 
find(String) - Method in class org.protege.editor.owl.ui.view.individual.OWLIndividualListViewComponent
 
find(String) - Method in class org.protege.editor.owl.ui.view.individual.OWLIndividualsByTypeViewComponent
 
Findable<E extends org.semanticweb.owlapi.model.OWLEntity> - Interface in org.protege.editor.owl.ui.view
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 11-Sep-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

FindAction - Class in org.protege.editor.owl.ui.action
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 28-Sep-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

FindAction() - Constructor for class org.protege.editor.owl.ui.action.FindAction
 
FINISH - Static variable in class org.protege.editor.core.ui.wizard.WizardPanel
Identifier returned by getNextPanelDescriptor() to indicate that this is the last panel and the text of the 'Next' button should change to 'Finish'.
FINISH_RETURN_CODE - Static variable in class org.protege.editor.core.ui.wizard.Wizard
Indicates that the 'Finish' button was pressed to dispose the dialog.
finishedLoadingOntology(OWLOntologyLoaderListener.LoadingFinishedEvent) - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
 
finishPressed(WizardEvent) - Method in interface uk.ac.man.cs.mig.util.wizard.WizardEventListener
 
fireCancelButtonPressedEvent() - Method in class uk.ac.man.cs.mig.util.wizard.Wizard
 
fireChange() - Method in class org.protege.editor.core.ui.util.FilePathPanel
 
fireChange() - Method in class org.protege.editor.core.ui.util.URLPanel
 
fireChanged() - Method in class org.protege.editor.owl.model.inference.ReasonerPreferences
 
fireCheckChanged(Object, int, boolean) - Method in class org.protege.editor.core.ui.util.CheckList
 
fireChildAddedEvent(Object, Object) - Method in class uk.ac.man.cs.mig.util.graph.model.impl.AbstractGraphModel
Propagates a child object added event to registered listeners.
fireChildObjectAddedEvent(Object, Object) - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultVisualisedObjectManager
Propagates a child object added event to listeners
fireChildObjectRemovedEvent(Object, Object) - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultVisualisedObjectManager
Propagates a child object removed event to listeners
fireChildRemovedEvent(Object, Object) - Method in class uk.ac.man.cs.mig.util.graph.model.impl.AbstractGraphModel
Propagates a child object removed event to registered listeners.
fireContentChanged() - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrame
 
fireContentChanged() - Method in interface org.protege.editor.owl.ui.frame.OWLFrame
Called when the frame content (either the sections or the rows within sections) have changed.
fireEvent(EventType) - Method in interface org.protege.editor.owl.model.OWLModelManager
 
fireEvent(EventType) - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
 
fireFinishButtonPressedEvent() - Method in class uk.ac.man.cs.mig.util.wizard.Wizard
 
fireGraphChangedEvent() - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultGraphGenerator
 
fireHierarchyChanged() - Method in class org.protege.editor.owl.model.hierarchy.AbstractOWLObjectHierarchyProvider
 
fireListeners() - Method in class org.protege.editor.owl.ui.library.NewEntryPanel
 
fireMappingAdded(String, String) - Method in class org.protege.editor.owl.model.namespace.AbstractNamespaceManager
 
fireMappingRemoved(String, String) - Method in class org.protege.editor.owl.model.namespace.AbstractNamespaceManager
 
fireModelChangedEvent() - Method in class uk.ac.man.cs.mig.util.graph.model.impl.AbstractGraphModel
Propagates a model changed event to all registered listeners.
fireNextButtonPressedEvent() - Method in class uk.ac.man.cs.mig.util.wizard.Wizard
 
fireNodeChanged(N) - Method in class org.protege.editor.owl.model.hierarchy.AbstractOWLObjectHierarchyProvider
 
fireNodeClickedEvent(Node, MouseEvent) - Method in class uk.ac.man.cs.mig.util.graph.ui.GraphView
Causes a NodeClickedEvent to be fired.
fireNodeSelectionChangedEvent() - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultGraphSelectionModel
Propagates selection events to listeners.
fireObjectAddedEvent(ArrayList) - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultVisualisedObjectManager
Propagates an object added event to all listeners.
fireObjectChangedEvent(ArrayList) - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultVisualisedObjectManager
Propagates an object changed event to all listeners.
fireObjectRemovedEvent(ArrayList) - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultVisualisedObjectManager
Propagates an object removed event to all listeners.
fireObjectsAddedEvent(ArrayList) - Method in class uk.ac.man.cs.mig.util.graph.model.impl.AbstractGraphModel
 
fireObjectsChangedEvent(ArrayList) - Method in class uk.ac.man.cs.mig.util.graph.model.impl.AbstractGraphModel
Propagates an object changed event to registered listeners.
fireObjectsRemovedEvent(ArrayList) - Method in class uk.ac.man.cs.mig.util.graph.model.impl.AbstractGraphModel
Propagates an object removed event to registered listeners.
fireOptionsChangedEvent() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.options.OWLVizViewOptions
 
firePageChangedEvent() - Method in class uk.ac.man.cs.mig.util.wizard.Wizard
 
fireParentAddedEvent(Object, Object) - Method in class uk.ac.man.cs.mig.util.graph.model.impl.AbstractGraphModel
Propagates a parent object added event to registered listeners.
fireParentObjectAddedEvent(Object, Object) - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultVisualisedObjectManager
Propagates a parent object added event to listeners
fireParentObjectRemovedEvent(Object, Object) - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultVisualisedObjectManager
Propagates a parent object removed event to listeners
fireParentRemovedEvent(Object, Object) - Method in class uk.ac.man.cs.mig.util.graph.model.impl.AbstractGraphModel
Propagates a parent object removed event to registered listeners.
firePopupClosedEvent() - Method in class uk.ac.man.cs.mig.util.popup.PopupComponent
Fires an event that informs registered listeners that the popup has closed.
firePrevButtonPressedEvent() - Method in class uk.ac.man.cs.mig.util.wizard.Wizard
 
firePropertyChange(String, Object, Object) - Method in class org.protege.editor.core.ui.wizard.WizardModel
 
firePropertyChangeEvent(String, String, String) - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.options.OWLVizProperties
Deprecated. Causes a PropertyChangeEvent to be sent to all listeners
firePropertyChangeEvent(String, Object, Object) - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultController
Propagates PropertyChangeEvents to any registered listeners.
fireRenderingChanged(OWLEntity) - Method in class org.protege.editor.owl.ui.renderer.AbstractOWLEntityRenderer
 
fireSelectionChanged() - Method in class org.protege.editor.core.ui.util.AbstractSelectionProvider
 
fireStateChanged() - Method in class org.protege.editor.core.ui.util.FileURIPanel
 
fireStateChanged() - Method in class org.protege.editor.owl.model.history.HistoryManagerImpl
 
fireStateChanged() - Method in class org.protege.editor.owl.model.selection.OWLSelectionHistoryManagerImpl
 
fireStateChanged(Object) - Method in class org.protege.editor.owl.ui.view.ChangeListenerMediator
Notifies all listeners of a state change event.
fireThumbnailViewSourceEvent(ThumbnailViewSourceEvent, int) - Method in class uk.ac.man.cs.mig.util.graph.ui.GraphComponent
 
fireVisibilityChanged() - Method in class org.protege.editor.owl.model.OntologyVisibilityManagerImpl
 
firstPage() - Method in class uk.ac.man.cs.mig.util.wizard.Wizard
Programmatically sets the Wizard to display the first page.
flush() - Method in class org.protege.editor.owl.model.inference.NoOpReasoner
 
FocusedComponentAction<C extends ActionTarget> - Class in org.protege.editor.owl.ui.action
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 02-May-2007

FocusedComponentAction() - Constructor for class org.protege.editor.owl.ui.action.FocusedComponentAction
 
FOLDER_BY_URI_VERSION - Static variable in class org.protege.editor.owl.model.library.folder.FolderGroupManager
 
FolderGroupManager - Class in org.protege.editor.owl.model.library.folder
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 23-Aug-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

FolderGroupManager() - Constructor for class org.protege.editor.owl.model.library.folder.FolderGroupManager
 
FolderGroupPanel - Class in org.protege.editor.owl.ui.library.plugins
 
FolderGroupPanel(XMLCatalog) - Constructor for class org.protege.editor.owl.ui.library.plugins.FolderGroupPanel
 
FONT_NAME - Static variable in class org.protege.editor.owl.ui.renderer.OWLRendererPreferences
 
FONT_SIZE - Static variable in class org.protege.editor.owl.ui.renderer.OWLRendererPreferences
 
forceRepaint() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizView
 
FOREGROUND - Static variable in class org.protege.editor.owl.ui.renderer.OWLCellRenderer
 
frameContentChanged() - Method in interface org.protege.editor.owl.ui.frame.OWLFrameListener
Gets called when the frame content has been changed.
FrameTooltipNode - Class in org.protege.ontograf.ui
 
FrameTooltipNode(OWLModelManager, AbstractGraph, PNode, OWLEntity) - Constructor for class org.protege.ontograf.ui.FrameTooltipNode
 

G

GatherOntologiesAction - Class in org.protege.editor.owl.ui.action
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 22-May-2007

GatherOntologiesAction() - Constructor for class org.protege.editor.owl.ui.action.GatherOntologiesAction
 
GatherOntologiesPanel - Class in org.protege.editor.owl.ui
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 21-Mar-2007

GatherOntologiesPanel(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.GatherOntologiesPanel
 
GeneralPreferencesPanel - Class in org.protege.editor.owl.ui.preferences
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 03-Sep-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

GeneralPreferencesPanel() - Constructor for class org.protege.editor.owl.ui.preferences.GeneralPreferencesPanel
 
generateGraph() - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultGraphGenerator
Regenrates the graph
generateName(Class<T>, String, IRI) - Method in class org.protege.editor.owl.model.entity.CustomOWLEntityFactory
 
generateNewIRI(OWLEntity) - Method in class org.protege.editor.owl.model.refactor.ontology.OWLEntityIRIRegenerator
 
generateParseException() - Method in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.DotParser
 
GeneratePrefixFromOntologyAction - Class in org.protege.editor.owl.ui.prefix
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 22-Sep-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

GeneratePrefixFromOntologyAction(OWLEditorKit, PrefixMapperTables) - Constructor for class org.protege.editor.owl.ui.prefix.GeneratePrefixFromOntologyAction
 
generateURI() - Method in class org.protege.editor.owl.ui.ontology.OntologyPreferences
 
get(Object) - Method in class org.protege.editor.core.AbstractModelManager
 
get(Object) - Method in class org.protege.editor.core.editorkit.AbstractEditorKit
 
get(Object) - Method in interface org.protege.editor.core.editorkit.EditorKit
 
get(Object) - Method in interface org.protege.editor.core.ModelManager
 
get(OWLEditorKit) - Static method in class org.protege.editor.owl.model.selection.OWLClassAssertionSelectionModel
 
get(Object) - Method in class org.protege.editor.owl.OWLEditorKit
 
get(OWLModelManager) - Static method in class org.protege.editor.owl.ui.explanation.io.InconsistentOntologyManager
 
getAccelerator() - Method in interface org.protege.editor.core.ui.menu.MenuActionPlugin
Gets the accelerator KeyStroke for the menu item defined by this plugin.
getAccelerator() - Method in class org.protege.editor.core.ui.menu.MenuActionPluginJPFImpl
 
getActionListener() - Method in class org.protege.editor.core.ui.list.MListButton
 
getActions() - Method in class org.protege.editor.core.ui.menu.MenuBuilder
 
getActiveCatalog() - Method in class org.protege.editor.owl.model.library.OntologyCatalogManager
 
getActiveCatalogFolder() - Method in class org.protege.editor.owl.model.library.OntologyCatalogManager
 
getActiveFilters() - Method in class org.protege.editor.owl.ui.usage.UsagePreferences
 
getActiveOntologies() - Method in interface org.protege.editor.owl.model.OWLModelManager
Gets the ontologies that are in the imports closure of the the active ontology.
getActiveOntologies() - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
 
getActiveOntologiesStrategies() - Method in interface org.protege.editor.owl.model.OWLModelManager
 
getActiveOntologiesStrategies() - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
 
getActiveOntologiesStrategy() - Method in interface org.protege.editor.owl.model.OWLModelManager
 
getActiveOntologiesStrategy() - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
 
getActiveOntology() - Method in interface org.protege.editor.owl.model.OWLModelManager
Gets the active ontology.
getActiveOntology() - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
 
getADCsForOntology(OWLOntology) - Method in class org.protege.editor.owl.model.classexpression.anonymouscls.ADCFactory
 
getAddChanges(OWLAnnotation) - Method in class org.protege.editor.owl.ui.axiom.AxiomAnnotationsList
 
getAddChanges(OWLAnnotation) - Method in class org.protege.editor.owl.ui.list.AbstractAnnotationsList
 
getAddChanges(OWLAnnotation) - Method in class org.protege.editor.owl.ui.ontology.annotation.OWLOntologyAnnotationList
 
getAddedParents(N) - Method in class org.protege.editor.owl.model.hierarchy.OWLObjectHierarchyDiffTool
 
getAdditionalButtons() - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSection
 
getAdditionalButtons() - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSectionRow
 
getAllCatalogs() - Method in class org.protege.editor.owl.model.library.OntologyCatalogManager
 
getAllGraphComponents() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizView
 
getAllGraphComponents() - Method in interface uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizViewI
 
getAllKeyWord() - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererDLSyntax
 
getAllNodes() - Method in class uk.ac.man.cs.mig.coode.owlviz.model.OWLVizAxiomGraphModel
 
getAllowsChildren() - Method in class org.protege.editor.owl.ui.tree.OWLObjectTreeNode
 
getAllValues() - Method in class org.protege.editor.core.ui.util.CheckTable
 
getAllValues() - Method in class org.protege.editor.core.ui.util.CheckTableModel
 
getAncestors(N) - Method in class org.protege.editor.owl.model.hierarchy.AbstractOWLObjectHierarchyProvider
 
getAncestors(OWLClass) - Method in class org.protege.editor.owl.model.hierarchy.cls.InferredOWLClassHierarchyProvider
 
getAncestors(N) - Method in interface org.protege.editor.owl.model.hierarchy.OWLObjectHierarchyProvider
 
getAndKeyWord() - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererDLSyntax
 
getAnnotation() - Method in class org.protege.editor.owl.ui.editor.OWLAnnotationEditor
 
getAnnotation() - Method in class org.protege.editor.owl.ui.list.AbstractAnnotationsList.AnnotationsListItem
 
getAnnotationIRIs() - Method in class org.protege.editor.owl.ui.renderer.OWLRendererPreferences
 
getAnnotationLangMap() - Method in class org.protege.editor.owl.ui.renderer.OWLRendererPreferences
 
getAnnotationLangs() - Method in class org.protege.editor.owl.ui.renderer.OWLRendererPreferences
 
getAnnotationPropertySelector() - Method in class org.protege.editor.owl.ui.editor.OWLAnnotationEditor
 
getAnnotations() - Method in interface org.protege.editor.owl.model.AnnotationContainer
 
getAnnotations() - Method in class org.protege.editor.owl.model.OntologyAnnotationContainer
 
getAnnotations() - Method in class org.protege.editor.owl.model.util.OWLAxiomInstance
 
getAnnotationSpecifier() - Method in class org.protege.editor.owl.ui.renderer.plugin.RendererPlugin
 
getAntialiased() - Method in class uk.ac.man.cs.mig.coode.owlviz.export.DotExportFormat
If the export supports antialiasing, this method ,ay be used to determine whether antialiasing will be applied.
getAntialiased() - Method in interface uk.ac.man.cs.mig.util.graph.export.ExportFormat
If the export supports antialiasing, this method ,ay be used to determine whether antialiasing will be applied.
getAntialiased() - Method in class uk.ac.man.cs.mig.util.graph.export.impl.AbstractRasterFormat
If the export supports antialiasing, this method ,ay be used to determine whether antialiasing will be applied.
getAntialiased() - Method in class uk.ac.man.cs.mig.util.graph.export.impl.AbstractVectorFormat
If the export supports antialiasing, this method ,ay be used to determine whether antialiasing will be applied.
getApplication() - Method in class org.protege.editor.core.ProtegeManager
 
getApplicationBundle() - Method in class org.protege.editor.core.plugin.PluginUtilities
 
getApplicationContext() - Method in class org.protege.editor.core.plugin.PluginUtilities
 
getApplicationPreferences(Class) - Method in class org.protege.editor.core.prefs.JavaBackedPreferencesManagerImpl
 
getApplicationPreferences(String) - Method in class org.protege.editor.core.prefs.JavaBackedPreferencesManagerImpl
 
getApplicationPreferences(String) - Method in class org.protege.editor.core.prefs.PreferencesManager
Gets hold of the application preferences.
getApplicationPreferences(Class) - Method in class org.protege.editor.core.prefs.PreferencesManager
A convenience method that gets some application preferences with an id that is generated from a class name.
getArcTypes() - Method in class org.protege.ontograf.common.ProtegeGraphModel
 
getArguments(BundleContext) - Static method in class org.protege.editor.core.platform.PlatformArguments
 
getAssertedGraphComponent() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizView
 
getAttribute(IExtension, String) - Static method in class org.protege.editor.core.plugin.PluginUtilities
 
getAttributes(IExtension) - Static method in class org.protege.editor.core.plugin.PluginUtilities
 
getAuthor() - Method in class org.protege.editor.core.update.PluginInfo
 
getAutoExpansionChildLimit() - Method in class org.protege.editor.owl.ui.tree.OWLTreePreferences
Gets the maximum child count that would allow a branch to be automatically expanded.
getAutoExpansionDepthLimit() - Method in class org.protege.editor.owl.ui.tree.OWLTreePreferences
 
getAutoIDDigitCount() - Static method in class org.protege.editor.owl.model.entity.EntityCreationPreferences
 
getAutoIDEnd() - Static method in class org.protege.editor.owl.model.entity.EntityCreationPreferences
 
getAutoIDGeneratorClass() - Static method in class org.protege.editor.owl.model.entity.EntityCreationPreferences
 
getAutoIDStart() - Static method in class org.protege.editor.owl.model.entity.EntityCreationPreferences
 
getAvailableDownloads() - Method in interface org.protege.editor.core.update.PluginRegistry
 
getAvailableDownloads() - Method in class org.protege.editor.core.update.PluginRegistryImpl
 
getAvailableVersion() - Method in class org.protege.editor.core.update.PluginInfo
 
getAverageTimeInTask(ReasonerPreferences.OptionalInferenceTask) - Method in class org.protege.editor.owl.model.inference.DisplayedInferencePreferences
 
getAverageTimeInTask(ReasonerPreferences.OptionalInferenceTask) - Method in class org.protege.editor.owl.model.inference.ReasonerPreferences
 
getAxiom() - Method in class org.protege.editor.owl.model.util.OWLAxiomInstance
 
getAxiom() - Method in class org.protege.editor.owl.ui.axiom.AxiomAnnotationPanel
 
getAxiom() - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSectionRow
Gets the object that the row holds.
getAxiom() - Method in interface org.protege.editor.owl.ui.frame.OWLFrameSectionRow
Gets the axiom that the row holds.
getAxiom() - Method in class org.protege.editor.owl.ui.usage.UsageByEntityTreeModel.UsageTreeNode
 
getAxiom(OWLDataFactory, N, N) - Method in class org.protege.editor.owl.ui.view.OWLPropertyTreeDropHandler
 
getAxioms(Set<OWLOntology>) - Method in class org.protege.editor.owl.model.selection.axioms.AllAxiomsStrategy
 
getAxioms(Set<OWLOntology>) - Method in class org.protege.editor.owl.model.selection.axioms.AnnotationAxiomsStrategy
 
getAxioms(Set<OWLOntology>) - Method in interface org.protege.editor.owl.model.selection.axioms.AxiomSelectionStrategy
 
getAxioms(Set<OWLOntology>) - Method in class org.protege.editor.owl.model.selection.axioms.AxiomTypeStrategy
 
getAxioms(Set<OWLOntology>) - Method in class org.protege.editor.owl.model.selection.axioms.ClassReferencingAxiomsStrategy
 
getAxioms(Set<OWLOntology>) - Method in class org.protege.editor.owl.model.selection.axioms.DataPropertyReferencingAxiomStrategy
 
getAxioms(Set<OWLOntology>) - Method in class org.protege.editor.owl.model.selection.axioms.IndividualReferencingAxiomStrategy
 
getAxioms(Set<OWLOntology>) - Method in class org.protege.editor.owl.model.selection.axioms.ObjectPropertyReferencingAxiomStrategy
 
getAxioms() - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSection
 
getAxioms(OWLOntology) - Method in class org.protege.editor.owl.ui.frame.annotationproperty.OWLAnnotationPropertyDomainFrameSection
 
getAxioms(OWLOntology) - Method in class org.protege.editor.owl.ui.frame.annotationproperty.OWLAnnotationPropertyRangeFrameSection
 
getAxioms(OWLOntology) - Method in class org.protege.editor.owl.ui.frame.annotationproperty.OWLSubAnnotationPropertyFrameSection
 
getAxioms(OWLOntology) - Method in class org.protege.editor.owl.ui.frame.dataproperty.OWLDataPropertyDomainFrameSection
 
getAxioms(OWLOntology) - Method in class org.protege.editor.owl.ui.frame.objectproperty.OWLObjectPropertyDomainFrameSection
 
getAxioms() - Method in interface org.protege.editor.owl.ui.frame.OWLFrameSection
 
getAxioms(OWLOntology) - Method in class org.protege.editor.owl.ui.frame.property.AbstractPropertyDomainFrameSection
 
getAxioms(Set<OWLOntology>) - Method in class org.protege.editor.owl.ui.ontology.wizard.move.byprofile.MoveAxiomsByProfileKit
 
getAxioms(Set<OWLOntology>) - Method in class org.protege.editor.owl.ui.ontology.wizard.move.byreference.MoveAxiomsByReferenceKit
 
getAxioms(Set<OWLOntology>, Set<OWLEntity>) - Method in class org.protege.editor.owl.ui.ontology.wizard.move.byreference.MoveAxiomsByReferenceKit
 
getAxioms(Set<OWLOntology>) - Method in class org.protege.editor.owl.ui.ontology.wizard.move.bytype.MoveAxiomsByTypeKit
 
getAxioms(Set<OWLOntology>) - Method in interface org.protege.editor.owl.ui.ontology.wizard.move.common.SignatureSelection
 
getAxioms(Set<OWLOntology>, Set<OWLEntity>) - Method in interface org.protege.editor.owl.ui.ontology.wizard.move.common.SignatureSelection
 
getAxioms(Set<OWLOntology>) - Method in class org.protege.editor.owl.ui.ontology.wizard.move.MoveAxiomsKit
 
getAxiomsToBeMoved() - Method in interface org.protege.editor.owl.ui.ontology.wizard.move.MoveAxiomsModel
 
getAxiomsToBeMoved() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.MoveAxiomsWizard
 
getAxiomType() - Method in class org.protege.editor.owl.ui.editor.AbstractOWLClassExpressionEditor
 
getBackButtonEnabled() - Method in class org.protege.editor.core.ui.wizard.Wizard
Mirrors the WizardModel method of the same name.
getBackground() - Method in class org.protege.editor.core.ui.list.MListButton
 
getBackgroundColor() - Method in interface org.protege.editor.core.ui.view.ViewComponentPlugin
 
getBackgroundColor() - Method in class org.protege.editor.core.ui.view.ViewComponentPluginAdapter
 
getBackgroundColor() - Method in class org.protege.editor.core.ui.view.ViewComponentPluginJPFImpl
 
getBackgroundTaskManager() - Static method in class org.protege.editor.core.ProtegeApplication
 
getBackPanelDescriptor() - Method in class org.protege.editor.core.ui.wizard.WizardPanel
Override this class to provide the Object-based identifier of the panel that the user should traverse to when the Back button is pressed.
getBackPanelDescriptor() - Method in class org.protege.editor.owl.ui.action.export.inferred.ExportInferredOntologyIDPanel
 
getBackPanelDescriptor() - Method in class org.protege.editor.owl.ui.action.export.inferred.ExportInferredOntologyIncludeAssertedAxiomsPanel
 
getBackPanelDescriptor() - Method in class org.protege.editor.owl.ui.action.OntologyFormatPage
 
getBackPanelDescriptor() - Method in class org.protege.editor.owl.ui.hierarchy.creation.MakeSiblingClassesDisjointPanel
Override this class to provide the Object-based identifier of the panel that the user should traverse to when the Back button is pressed.
getBackPanelDescriptor() - Method in class org.protege.editor.owl.ui.hierarchy.creation.TabIndentedHierarchyPanel
Override this class to provide the Object-based identifier of the panel that the user should traverse to when the Back button is pressed.
getBackPanelDescriptor() - Method in class org.protege.editor.owl.ui.ontology.imports.missing.CopyOptionPanel
 
getBackPanelDescriptor() - Method in class org.protege.editor.owl.ui.ontology.imports.missing.SpecifyFilePathPanel
 
getBackPanelDescriptor() - Method in class org.protege.editor.owl.ui.ontology.imports.wizard.page.ImportConfirmationPage
 
getBackPanelDescriptor() - Method in class org.protege.editor.owl.ui.ontology.imports.wizard.page.ImportTypePage
 
getBackPanelDescriptor() - Method in class org.protege.editor.owl.ui.ontology.imports.wizard.page.LibraryPage
 
getBackPanelDescriptor() - Method in class org.protege.editor.owl.ui.ontology.imports.wizard.page.LoadedOntologyPage
 
getBackPanelDescriptor() - Method in class org.protege.editor.owl.ui.ontology.imports.wizard.page.LocalFilePage
 
getBackPanelDescriptor() - Method in class org.protege.editor.owl.ui.ontology.imports.wizard.page.SelectImportLocationPage
 
getBackPanelDescriptor() - Method in class org.protege.editor.owl.ui.ontology.imports.wizard.page.URLPage
 
getBackPanelDescriptor() - Method in class org.protege.editor.owl.ui.ontology.wizard.create.PhysicalLocationPanel
 
getBackPanelDescriptor() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.CreateNewOntologyPanel
 
getBackPanelDescriptor() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.MoveAxiomsWizardKitConfigurationPanel
 
getBackPanelDescriptor() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.SelectActionPanel
 
getBackPanelDescriptor() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.SelectKitPanel
 
getBackPanelDescriptor() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.SelectSourceOntologiesPanel
 
getBackPanelDescriptor() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.SelectTargetOntologyPanel
 
getBackPanelDescriptor() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.SelectTargetOntologyTypePanel
 
getBaseIRI() - Method in class org.protege.editor.owl.ui.OWLEntityCreationPanel
 
getBaseURI() - Method in class org.protege.editor.owl.ui.ontology.OntologyPreferences
 
getBeginColumn() - Method in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.SimpleCharStream
 
getBeginLine() - Method in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.SimpleCharStream
 
getBookMarkedURIs() - Method in class org.protege.editor.core.BookMarkedURIManager
 
getBoolean(String, boolean) - Method in class org.protege.editor.core.prefs.JavaBackedPreferencesImpl
 
getBoolean(String, boolean) - Method in interface org.protege.editor.core.prefs.Preferences
 
getBoolean(String, boolean) - Static method in class org.protege.editor.core.PropertyUtil
 
getBooleanParameterValue(IExtension, String, boolean) - Static method in class org.protege.editor.core.plugin.PluginProperties
 
getBooleanProperty(Entry, String, boolean) - Static method in class org.protege.editor.owl.model.library.LibraryUtilities
 
getBooleanProperty(String, boolean) - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.options.OWLVizProperties
Deprecated. Gets a value for a boolean property.
getBorderInsets(Component) - Method in class org.protege.editor.owl.ui.framelist.OWLFrameListInferredSectionRowBorder
Returns the insets of the border.
getBottomClassNode() - Method in class org.protege.editor.owl.model.inference.NoOpReasoner
 
getBottomDataPropertyNode() - Method in class org.protege.editor.owl.model.inference.NoOpReasoner
 
getBottomObjectPropertyNode() - Method in class org.protege.editor.owl.model.inference.NoOpReasoner
 
getBounds() - Method in class org.protege.editor.core.ui.list.MListButton
 
getBufferingMode() - Method in class org.protege.editor.owl.model.inference.NoOpReasoner
 
getBuildNumber(Bundle) - Static method in class org.protege.editor.core.plugin.PluginUtilities
 
getBuiltinDatatypes() - Method in class org.protege.editor.owl.model.util.OWLDataTypeUtils
 
getBundle(IExtension) - Method in class org.protege.editor.core.plugin.PluginUtilities
 
getBundle(IContributor) - Method in class org.protege.editor.core.plugin.PluginUtilities
 
getBundleContext() - Static method in class org.protege.editor.owl.ProtegeOWL
 
getBundleManager() - Static method in class org.protege.editor.core.ProtegeApplication
 
getBundleVersion(Bundle) - Static method in class org.protege.editor.core.plugin.PluginUtilities
 
getButtons(Object) - Method in class org.protege.editor.core.ui.list.MList
 
getButtons(Object) - Method in class org.protege.editor.owl.ui.framelist.OWLFrameList
 
getByteArray(String, byte[]) - Method in class org.protege.editor.core.prefs.JavaBackedPreferencesImpl
 
getByteArray(String, byte[]) - Method in interface org.protege.editor.core.prefs.Preferences
 
getByteArrayList(String, List<byte[]>) - Method in class org.protege.editor.core.prefs.JavaBackedPreferencesImpl
 
getByteArrayList(String, List<byte[]>) - Method in interface org.protege.editor.core.prefs.Preferences
 
getCachedArcsForEntity(OWLEntity) - Method in class org.protege.ontograf.common.ProtegeGraphModel
 
getCancelButtonEnabled() - Method in class org.protege.editor.core.ui.wizard.Wizard
Mirrors the WizardModel method of the same name.
getCatalogEntryManagers() - Method in class org.protege.editor.owl.model.library.OntologyCatalogManager
 
getCatalogFile(File) - Static method in class org.protege.editor.owl.model.library.OntologyCatalogManager
 
getCatalogFile(XMLCatalog) - Static method in class org.protege.editor.owl.model.library.OntologyCatalogManager
this works for catalogs that are generated from a parse or created by the OntologyCatalogManager.
getCategorisations() - Method in interface org.protege.editor.core.ui.view.ViewComponentPlugin
 
getCategorisations() - Method in class org.protege.editor.core.ui.view.ViewComponentPluginAdapter
 
getCategorisations() - Method in class org.protege.editor.core.ui.view.ViewComponentPluginJPFImpl
 
getCause() - Method in class org.protege.editor.core.ui.error.ErrorExplainer.ErrorExplanation
 
getCellBounds(JList, int, int) - Method in class org.protege.editor.owl.ui.framelist.OWLFrameList.OWLFrameListUI
 
getCellEditorValue() - Method in class org.protege.editor.owl.ui.prefix.PrefixTableCellEditor
 
getCellObject() - Method in class org.protege.editor.owl.ui.table.BasicLinkedOWLObjectTable
Gets the cell object that the mouse is over
getChange(String, OWLDataFactory) - Method in class org.protege.editor.owl.model.hierarchy.tabbed.AbstractOWLObjectHierarchyCreator
 
getChange(String, String, OWLDataFactory) - Method in class org.protege.editor.owl.model.hierarchy.tabbed.AbstractOWLObjectHierarchyCreator
 
getChangedOntologies() - Method in class org.protege.editor.owl.model.io.OntologySourcesManager
 
getChangeRewriter() - Method in class org.protege.editor.owl.model.classexpression.anonymouscls.AnonymousDefinedClassManager
 
getChanges(T, CustomOWLEntityFactory.EntityNameInfo) - Method in class org.protege.editor.owl.model.entity.CustomOWLEntityFactory
 
getChanges() - Method in class org.protege.editor.owl.model.refactor.AllDifferentCreator
 
getChanges() - Method in class org.protege.editor.owl.model.refactor.EntityFindAndReplaceURIRenamer
 
getChanges() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.MoveAxiomsWizard
 
getCheckDelay() - Method in class org.protege.editor.owl.ui.clsdescriptioneditor.ExpressionEditorPreferences
 
getCheckedItems() - Method in class org.protege.editor.core.ui.util.CheckList
 
getChild() - Method in class org.protege.editor.owl.model.hierarchy.tabbed.Edge
 
getChildAt(int) - Method in class org.protege.editor.owl.ui.tree.OWLObjectTreeNode
 
getChildCount(N) - Method in class org.protege.editor.owl.ui.tree.OWLObjectTree
 
getChildCount() - Method in class org.protege.editor.owl.ui.tree.OWLObjectTreeNode
 
getChildCount(Object) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.AbstractOWLClassGraphModel
 
getChildCount(Object) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.OWLOntologyImportsGraphModel
 
getChildCount(Object) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.OWLVizAxiomGraphModel
 
getChildCount(Object) - Method in interface uk.ac.man.cs.mig.util.graph.model.GraphModel
Retrives the number of children that the specified object has.
getChildCount(Object) - Method in class uk.ac.man.cs.mig.util.graph.model.impl.DefaultGraphModel
Retrives the number of children that the specified object has.
getChildCount() - Method in class uk.ac.man.cs.mig.util.graph.model.impl.DefaultGraphNode
 
getChilderenUserObjects() - Method in class uk.ac.man.cs.mig.util.graph.model.impl.DefaultGraphNode
 
getChildNodes(OWLObjectTreeNode<N>) - Method in class org.protege.editor.owl.ui.tree.OWLObjectTree
 
getChildren(P) - Method in class org.protege.editor.owl.model.hierarchy.AbstractOWLPropertyHierarchyProvider
 
getChildren(OWLClass) - Method in class org.protege.editor.owl.model.hierarchy.AssertedClassHierarchyProvider
 
getChildren(OWLClass) - Method in class org.protege.editor.owl.model.hierarchy.AssertedSuperClassHierarchyProvider
 
getChildren(OWLClass) - Method in class org.protege.editor.owl.model.hierarchy.cls.InferredOWLClassHierarchyProvider
 
getChildren(OWLClass) - Method in class org.protege.editor.owl.model.hierarchy.cls.InferredSuperClassHierarchyProvider
 
getChildren(OWLObject) - Method in class org.protege.editor.owl.model.hierarchy.IndividualsByInferredTypeHierarchyProvider
 
getChildren(OWLObject) - Method in class org.protege.editor.owl.model.hierarchy.IndividualsByTypeHierarchyProvider
 
getChildren(OWLAnnotationProperty) - Method in class org.protege.editor.owl.model.hierarchy.OWLAnnotationPropertyHierarchyProvider
 
getChildren(N) - Method in interface org.protege.editor.owl.model.hierarchy.OWLObjectHierarchyProvider
 
getChildren(OWLOntology) - Method in class org.protege.editor.owl.model.hierarchy.OWLOntologyHierarchyProvider
 
getChildren(OWLObjectProperty) - Method in class org.protege.editor.owl.model.hierarchy.property.InferredObjectPropertyHierarchyProvider
 
getChildren(OWLObject) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.AbstractOWLClassGraphModel
 
getChildren(Object) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.AbstractOWLClassGraphModel
 
getChildren(Object) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.OWLOntologyImportsGraphModel
 
getChildren(Object) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.OWLVizAxiomGraphModel
 
getChildren(Object) - Method in interface uk.ac.man.cs.mig.util.graph.model.GraphModel
Gets the children of the specified object
getChildren(Object) - Method in class uk.ac.man.cs.mig.util.graph.model.impl.DefaultGraphModel
Gets the children of the specified object
getChildren() - Method in class uk.ac.man.cs.mig.util.graph.model.impl.DefaultGraphNode
 
getChildrenHiddenCount(Object) - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultVisualisedObjectManager
Determines how many children of the specified object are hidden.
getChildrenHiddenCount(Object) - Method in interface uk.ac.man.cs.mig.util.graph.controller.VisualisedObjectManager
Determines how many children of the specified object are hidden.
getChildrenShownCount(Object) - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultVisualisedObjectManager
Determines how many children of the specified object are shown.
getChildrenShownCount(Object) - Method in interface uk.ac.man.cs.mig.util.graph.controller.VisualisedObjectManager
Determines how many children of the specified object are shown.
getClassAxiomChecker() - Method in class org.protege.editor.owl.ui.clsdescriptioneditor.ManchesterOWLExpressionCheckerFactory
 
getClassAxiomChecker() - Method in interface org.protege.editor.owl.ui.clsdescriptioneditor.OWLExpressionCheckerFactory
 
getClassAxioms(OWLClassExpression, OWLOntology) - Method in class org.protege.editor.owl.ui.frame.cls.AbstractOWLClassAxiomFrameSection
 
getClassAxioms(OWLClassExpression, OWLOntology) - Method in class org.protege.editor.owl.ui.frame.cls.OWLClassAssertionAxiomMembersSection
 
getClassAxioms(OWLClassExpression, OWLOntology) - Method in class org.protege.editor.owl.ui.frame.cls.OWLDisjointClassesAxiomFrameSection
 
getClassAxioms(OWLClassExpression, OWLOntology) - Method in class org.protege.editor.owl.ui.frame.cls.OWLEquivalentClassesAxiomFrameSection
 
getClassAxioms(OWLClassExpression, OWLOntology) - Method in class org.protege.editor.owl.ui.frame.cls.OWLSubClassAxiomFrameSection
 
getClassExpression() - Method in class org.protege.editor.owl.model.classexpression.AbstractQueryNode
 
getClassExpression() - Method in class org.protege.editor.owl.model.classexpression.OWLClassExpressionLeafNode
 
getClassExpression() - Method in interface org.protege.editor.owl.model.classexpression.OWLClassExpressionNode
 
getClassExpressions() - Method in class org.protege.editor.owl.model.util.NestedIntersectionFlattener
 
getClassExpressions() - Method in class org.protege.editor.owl.ui.editor.AbstractRestrictionCreatorPanel
 
getClassExpressions() - Method in interface org.protege.editor.owl.ui.editor.OWLClassExpressionEditor
 
getClassExpressions() - Method in class org.protege.editor.owl.ui.editor.OWLClassExpressionExpressionEditor
 
getClassExpressions() - Method in class org.protege.editor.owl.ui.editor.OWLClassSelectorWrapper
 
getClassRadius() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.ClassRadiusDialog
Retrives the class radius entered by the user.
getClassRadius() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.ClassRadiusDialogPage
 
getClipboard() - Method in class org.protege.editor.owl.ui.view.ViewClipboard
 
getClosureAxiom(OWLClass, OWLObjectProperty, OWLDataFactory, Set<OWLOntology>) - Static method in class org.protege.editor.owl.model.util.ClosureAxiomFactory
 
getClosureRestriction() - Method in class org.protege.editor.owl.model.util.ClosureAxiomFactory
Gets a universal restriction (OWLObjectAllValuesFrom) that closes off the existential restrictions that have been visited by this visitor.
getClses() - Method in class uk.ac.man.cs.mig.coode.owlviz.command.ShowAllClassesCommand
 
getCollectiveTypeName() - Method in class org.protege.editor.owl.ui.view.AbstractOWLEntityHierarchyViewComponent
Override with the name of the entities to be used in the Edit | Delete menu - eg "classes"
getColor(String, Color) - Static method in class org.protege.editor.core.PropertyUtil
 
getColor(OWLEntity, Color) - Method in class org.protege.editor.owl.ui.renderer.OWLCellRenderer
 
getColor(OWLEntity) - Method in class org.protege.editor.owl.ui.renderer.OWLEntityColorProvider
Gets the color that should be used to paint the specified entity name.
getColorParameterValue(IExtension, String, Color) - Static method in class org.protege.editor.core.plugin.PluginProperties
 
getColumn() - Method in class org.protege.editor.core.ui.error.ErrorExplainer.ParseErrorExplanation
 
getColumnClass(int) - Method in class org.protege.editor.core.ui.util.CheckTableModel
 
getColumnClass(int) - Method in class org.protege.editor.owl.ui.inference.PrecomputePreferencesTableModel
 
getColumnCount() - Method in class org.protege.editor.core.ui.about.PluginInfoTableModel
 
getColumnCount() - Method in class org.protege.editor.core.ui.RepositoryTableModel
 
getColumnCount() - Method in class org.protege.editor.owl.ui.inference.PrecomputePreferencesTableModel
 
getColumnCount() - Method in class org.protege.editor.owl.ui.metrics.MetricsTableModel
 
getColumnCount() - Method in class org.protege.editor.owl.ui.ontology.location.PhysicalLocationTableModel
 
getColumnCount() - Method in class org.protege.editor.owl.ui.prefix.PrefixMapperTableModel
 
getColumnName(int) - Method in class org.protege.editor.core.ui.about.PluginInfoTableModel
 
getColumnName(int) - Method in class org.protege.editor.core.ui.RepositoryTableModel
 
getColumnName() - Method in enum org.protege.editor.owl.ui.inference.PrecomputePreferencesTableModel.Column
 
getColumnName(int) - Method in class org.protege.editor.owl.ui.inference.PrecomputePreferencesTableModel
 
getColumnName(int) - Method in class org.protege.editor.owl.ui.metrics.MetricsTableModel
 
getColumnName(int) - Method in class org.protege.editor.owl.ui.ontology.location.PhysicalLocationTableModel
 
getColumnName(int) - Method in class org.protege.editor.owl.ui.prefix.PrefixMapperTableModel
 
getComponent() - Method in class org.protege.editor.core.ui.preferences.node.BooleanPreferenceNode
 
getComponent() - Method in interface org.protege.editor.core.ui.preferences.node.PreferenceNode
 
getComponent() - Method in class org.protege.editor.core.ui.preferences.node.StringPreferenceNode
 
getComponent() - Method in class org.protege.editor.owl.ui.editor.AbstractRestrictionCreatorPanel
 
getComponent() - Method in class org.protege.editor.owl.ui.editor.IRIFromEntityEditor
 
getComponent() - Method in interface org.protege.editor.owl.ui.editor.OWLClassExpressionEditor
 
getComponent() - Method in class org.protege.editor.owl.ui.editor.OWLClassExpressionExpressionEditor
 
getComponent() - Method in class org.protege.editor.owl.ui.editor.OWLClassSelectorWrapper
 
getComponent() - Method in class org.protege.editor.owl.ui.framelist.OWLFrameList
 
getComponent() - Method in class org.protege.editor.owl.ui.list.OWLLinkedObjectList
 
getComponent() - Method in interface org.protege.editor.owl.ui.renderer.LinkedObjectComponent
 
getComponent() - Method in class org.protege.editor.owl.ui.table.BasicLinkedOWLObjectTable
 
getComponent() - Method in interface org.protege.editor.owl.ui.transfer.OWLObjectDropTarget
 
getComponent() - Method in class org.protege.editor.owl.ui.tree.OWLLinkedObjectTree
 
getComponent() - Method in class org.protege.editor.owl.ui.tree.OWLObjectTree
 
getComponentNode() - Method in class org.protege.editor.core.ui.view.View
 
getComponentsExtending(Component, Class<? extends T>) - Static method in class org.protege.editor.core.ui.util.UIUtil
 
getConfiguration(ReasonerProgressMonitor) - Method in class org.protege.editor.owl.model.inference.AbstractProtegeOWLReasonerInfo
 
getConfiguration(ReasonerProgressMonitor) - Method in class org.protege.editor.owl.model.inference.NoOpReasonerInfo
 
getConfiguration(ReasonerProgressMonitor) - Method in interface org.protege.editor.owl.model.inference.ProtegeOWLReasonerInfo
 
getConfigurationPanels() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.byprofile.MoveAxiomsByProfileKit
 
getConfigurationPanels() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.byreference.MoveAxiomsByReferenceKit
 
getConfigurationPanels() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.bytype.MoveAxiomsByTypeKit
 
getConfigurationPanels() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.MoveAxiomsKit
 
getConstant() - Method in class org.protege.editor.owl.ui.frame.OWLDataPropertyConstantPair
 
getContentBorderInsets(int) - Method in class org.protege.editor.core.ui.tabbedpane.ViewTabbedPaneUI
 
getContext() - Static method in class org.protege.editor.core.ProtegeApplication
 
getController() - Method in class uk.ac.man.cs.mig.util.graph.ui.GraphComponent
 
getCoveringAxiom() - Method in class org.protege.editor.owl.model.util.CoveringAxiomFactory
 
getCreateSibKeyStroke() - Static method in class org.protege.editor.owl.model.OWLWorkspace
 
getCreateSubKeyStroke() - Static method in class org.protege.editor.owl.model.OWLWorkspace
 
getCurrentFileDirectory() - Static method in class org.protege.editor.core.ui.util.UIUtil
 
getCurrentlyDisplayedSameIndividuals() - Method in class org.protege.editor.owl.ui.frame.individual.OWLSameIndividualsAxiomFrameSection
 
getCurrentPage() - Method in class uk.ac.man.cs.mig.util.wizard.Wizard
Gets the page currently being displayed.
getCurrentPopupPage() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.popup.PopupManager
 
getCurrentReasoner() - Method in interface org.protege.editor.owl.model.inference.OWLReasonerManager
Gets the current reasoner.
getCurrentReasoner() - Method in class org.protege.editor.owl.model.inference.OWLReasonerManagerImpl
 
getCurrentReasoner() - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSection
 
getCurrentReasonerFactory() - Method in interface org.protege.editor.owl.model.inference.OWLReasonerManager
 
getCurrentReasonerFactory() - Method in class org.protege.editor.owl.model.inference.OWLReasonerManagerImpl
 
getCurrentReasonerFactoryId() - Method in interface org.protege.editor.owl.model.inference.OWLReasonerManager
Gets the ID of the current reasoner.
getCurrentReasonerFactoryId() - Method in class org.protege.editor.owl.model.inference.OWLReasonerManagerImpl
 
getCurrentReasonerName() - Method in interface org.protege.editor.owl.model.inference.OWLReasonerManager
 
getCurrentReasonerName() - Method in class org.protege.editor.owl.model.inference.OWLReasonerManagerImpl
 
getCurrentSelection() - Method in class org.protege.editor.owl.ui.selector.OWLEntitySelectorPanel
 
getCurrentTarget() - Method in class org.protege.editor.owl.ui.action.FocusedComponentAction
 
getCurrentUpdateInfo() - Method in class org.protege.editor.core.update.PluginTable
 
getCurrentVersion() - Method in class org.protege.editor.core.update.PluginInfo
 
getCurrentWorkspace() - Method in class org.protege.editor.core.ui.action.NewAction
 
getCurrentWorkspace() - Method in class org.protege.editor.core.ui.action.OpenAction
 
getCurrentWorkspace() - Method in interface org.protege.editor.core.ui.util.OpenRequestHandler
 
getCurrentWorkspace() - Method in class org.protege.editor.owl.ui.action.OpenFromURLAction
 
getCustomTabPlugins(TabbedWorkspace) - Method in class org.protege.editor.core.ui.workspace.CustomWorkspaceTabsManager
Gets the plugins that define the custom tabs.
getCustomTabs() - Method in class org.protege.editor.core.ui.workspace.CustomWorkspaceTabsManager
Gets a list of the custom tabs that have been defined.
getCustomTabsManager() - Method in class org.protege.editor.core.ui.workspace.TabbedWorkspace
 
getCustomTabsManager() - Method in class org.protege.editor.owl.model.OWLWorkspace
 
getDataDirectory() - Static method in class org.protege.common.CommonProtegeProperties
 
getDataFactory() - Method in class org.protege.editor.owl.model.hierarchy.tabbed.AbstractOWLObjectHierarchyCreator
 
getDataFactory() - Method in class org.protege.editor.owl.ui.editor.AbstractRestrictionCreatorPanel
 
getDataFolder() - Static method in class org.protege.editor.core.FileManager
 
getDataPropertyDomains(OWLDataProperty, boolean) - Method in class org.protege.editor.owl.model.inference.NoOpReasoner
 
getDataPropertyValues(OWLNamedIndividual, OWLDataProperty) - Method in class org.protege.editor.owl.model.inference.NoOpReasoner
 
getDatatypeSelector() - Method in class org.protege.editor.owl.ui.UIHelper
 
getDebuggerClassExpression() - Method in class org.protege.editor.owl.ui.explanation.impl.BasicClassExpressionGenerator
 
getDeepestComponent(Point) - Method in class uk.ac.man.cs.mig.util.popup.PopupComponent
Obtains the deepest component below the glass pane at the specified point.
getDefaultAnnotationProperty() - Method in class org.protege.editor.owl.ui.editor.OWLAnnotationEditor
 
getDefaultBaseIRI() - Method in class org.protege.editor.owl.model.entity.CustomOWLEntityFactory
 
getDefaultBaseIRI() - Static method in class org.protege.editor.owl.model.entity.EntityCreationPreferences
 
getDefaultOntologies() - Method in class org.protege.editor.owl.ui.ontology.wizard.AbstractSelectOntologiesPage
Override to set the ontologies that are first shown
getDefaultOntologies() - Method in class org.protege.editor.owl.ui.ontology.wizard.merge.SelectOntologiesPage
Override to set the ontologies that are first shown
getDefaultOntologies() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.SelectSourceOntologiesPanel
 
getDefaultPluginId() - Method in class org.protege.editor.owl.ui.explanation.ExplanationDialog
 
getDefaultReasonerId() - Method in class org.protege.editor.owl.model.inference.ReasonerPreferences
 
getDefaultRenderer(Class<?>) - Method in class org.protege.editor.core.ui.util.CheckTable
 
getDefaultSeparator() - Static method in class org.protege.editor.owl.model.entity.EntityCreationPreferences
 
getDefaultState() - Method in class org.protege.editor.core.ui.view.ViewComponentPluginAdapter
 
getDefaultTrackerRadius() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizPreferences
 
getDefaultViewConfigFile() - Method in class org.protege.editor.core.ui.workspace.CustomWorkspaceTabsManager.CustomTabPlugin
 
getDefaultViewConfigFile() - Method in interface org.protege.editor.core.ui.workspace.WorkspaceTabPlugin
 
getDefaultViewConfigFile() - Method in class org.protege.editor.core.ui.workspace.WorkspaceTabPluginJPFImpl
 
getDefaultViewConfigurationFile() - Method in class org.protege.editor.core.ui.workspace.WorkspaceTab
 
getDelegate() - Method in class org.protege.editor.owl.ui.action.export.inferred.MonitoredInferredAxiomGenerator
 
getDeleteChanges(OWLAnnotation) - Method in class org.protege.editor.owl.ui.axiom.AxiomAnnotationsList
 
getDeleteChanges(OWLAnnotation) - Method in class org.protege.editor.owl.ui.list.AbstractAnnotationsList
 
getDeleteChanges(OWLAnnotation) - Method in class org.protege.editor.owl.ui.ontology.annotation.OWLOntologyAnnotationList
 
getDeleteIcon() - Method in class org.protege.editor.owl.ui.view.AbstractOWLPropertyHierarchyViewComponent
 
getDeleteIcon() - Method in class org.protege.editor.owl.ui.view.dataproperty.OWLDataPropertyHierarchyViewComponent
 
getDeleteIcon() - Method in class org.protege.editor.owl.ui.view.objectproperty.OWLObjectPropertyHierarchyViewComponent
 
getDeletionChanges() - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSectionRow
Deletes this row.
getDeletionChanges() - Method in interface org.protege.editor.owl.ui.frame.OWLFrameSectionRow
Gets the changes which are required to delete this row.
getDelimeter() - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSectionRow
 
getDelimeter() - Method in class org.protege.editor.owl.ui.frame.individual.OWLDataPropertyAssertionAxiomFrameSectionRow
 
getDelimeter() - Method in class org.protege.editor.owl.ui.frame.individual.OWLNegativeDataPropertyAssertionFrameSectionRow
 
getDelimeter() - Method in class org.protege.editor.owl.ui.frame.individual.OWLNegativeObjectPropertyAssertionFrameSectionRow
 
getDelimeter() - Method in class org.protege.editor.owl.ui.frame.individual.OWLObjectPropertyAssertionAxiomFrameSectionRow
 
getDelta() - Method in class org.protege.editor.core.ui.action.AbstractFontSizeAction
 
getDelta() - Method in class org.protege.editor.core.ui.action.DecreaseFontSizeAction
 
getDelta() - Method in class org.protege.editor.core.ui.action.IncreaseFontSizeAction
 
getDescendants(N) - Method in class org.protege.editor.owl.model.hierarchy.AbstractOWLObjectHierarchyProvider
 
getDescendants(OWLClass) - Method in class org.protege.editor.owl.model.hierarchy.cls.InferredOWLClassHierarchyProvider
 
getDescendants(N) - Method in interface org.protege.editor.owl.model.hierarchy.OWLObjectHierarchyProvider
 
getDescription() - Method in enum org.protege.editor.owl.model.inference.ReasonerStatus
 
getDescription() - Method in class org.protege.editor.owl.model.library.CatalogEntryManager
 
getDescription(Entry) - Method in class org.protege.editor.owl.model.library.CatalogEntryManager
 
getDescription() - Method in class org.protege.editor.owl.model.library.folder.FolderGroupManager
 
getDescription(Entry) - Method in class org.protege.editor.owl.model.library.folder.FolderGroupManager
 
getDescription() - Method in class org.protege.editor.owl.model.library.NextCatalogManager
 
getDescription(Entry) - Method in class org.protege.editor.owl.model.library.NextCatalogManager
 
getDescription() - Method in class org.protege.editor.owl.model.library.UriEntryManager
 
getDescription(Entry) - Method in class org.protege.editor.owl.model.library.UriEntryManager
 
getDescription() - Method in class org.protege.ontograf.ui.OntoGrafFileFilter
Returns the human readable description of this filter.
getDescriptionHistory() - Method in class org.protege.editor.owl.ui.clsdescriptioneditor.OWLExpressionHistoryCompleter
 
getDescriptors() - Method in class org.protege.editor.core.editorkit.RecentEditorKitManager
 
getDialog() - Method in class org.protege.editor.core.ui.wizard.Wizard
Returns an instance of the JDialog that this class created.
getDialogMode() - Method in class org.protege.editor.core.ui.util.FilePathPanel
 
getDifferentIndividuals(OWLNamedIndividual) - Method in class org.protege.editor.owl.model.inference.NoOpReasoner
 
getDigitLength() - Method in class org.protege.editor.owl.model.entity.AbstractIDGenerator
 
getDirection() - Method in interface uk.ac.man.cs.mig.util.graph.graph.Edge
Gets the direction of the Edge.
getDirection() - Method in class uk.ac.man.cs.mig.util.graph.graph.impl.DefaultEdge
Gets the direction of the Edge.
getDirtyOntologies() - Method in interface org.protege.editor.owl.model.OWLModelManager
Gets the set of loaded ontologies that have been edited but haven't been saved.
getDirtyOntologies() - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
 
getDisallowed() - Method in class org.protege.editor.owl.model.inference.PrecomputedInferencePreferences
 
getDisallowed() - Method in class org.protege.editor.owl.model.inference.ReasonerPreferences
 
getDisjointClasses(OWLClassExpression) - Method in class org.protege.editor.owl.model.inference.