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Protege 4.0.2
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AboutPanel - Class in org.protege.editor.core.ui.about
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 01-Sep-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

AboutPanel() - Constructor for class org.protege.editor.core.ui.about.AboutPanel
 
aboutToDisplayPanel() - Method in class org.protege.editor.core.ui.wizard.WizardPanel
Override this method to provide functionality that will be performed just before the panel is to be displayed.
aboutToDisplayPanel() - Method in class org.protege.editor.owl.ui.ontology.wizard.AbstractSelectOntologiesPage
 
aboutToDisplayPanel() - Method in class org.protege.editor.owl.ui.ontology.wizard.create.PhysicalLocationPanel
 
aboutToDisplayPanel() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.MoveAxiomsWizardKitConfigurationPanel
 
aboutToDisplayPanel() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.SelectActionPanel
 
aboutToDisplayPanel() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.SelectKitPanel
 
aboutToHidePanel() - Method in class org.protege.editor.core.ui.wizard.WizardPanel
Override this method to perform functionality just before the panel is to be hidden.
aboutToHidePanel() - Method in class org.protege.editor.owl.ui.ontology.imports.wizard.AbstractImportSourcePage
 
aboutToHidePanel() - Method in class org.protege.editor.owl.ui.ontology.wizard.create.PhysicalLocationPanel
 
aboutToHidePanel() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.CreateNewOntologyPanel
 
aboutToHidePanel() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.MoveAxiomsWizardKitConfigurationPanel
 
aboutToHidePanel() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.SelectActionPanel
 
aboutToHidePanel() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.SelectSourceOntologiesPanel
 
aboutToHidePanel() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.SelectTargetOntologyPanel
 
AbstractActiveOntologyViewComponent - Class in org.protege.editor.owl.ui.view
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 20-Mar-2007

AbstractActiveOntologyViewComponent() - Constructor for class org.protege.editor.owl.ui.view.AbstractActiveOntologyViewComponent
 
AbstractAppleApplicationWrapper - Class in org.protege.editor.core.platform.apple
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Sep 19, 2008

A wrapper for the apple Application class and its event handling.

AbstractAppleApplicationWrapper() - Constructor for class org.protege.editor.core.platform.apple.AbstractAppleApplicationWrapper
 
AbstractApplicationPluginLoader<E> - Class in org.protege.editor.core.plugin
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Mar 30, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

A helper class that loads application plugins - i.e.

AbstractApplicationPluginLoader(String) - Constructor for class org.protege.editor.core.plugin.AbstractApplicationPluginLoader
 
AbstractAxiomSelectionStrategy - Class in org.protege.editor.owl.model.selection.axioms
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: May 30, 2008

AbstractAxiomSelectionStrategy() - Constructor for class org.protege.editor.owl.model.selection.axioms.AbstractAxiomSelectionStrategy
 
AbstractDeleteEntityAction<E extends org.semanticweb.owl.model.OWLEntity> - Class in org.protege.editor.owl.ui.action
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 20-Apr-2007

AbstractDeleteEntityAction(String, Icon, OWLEditorKit, OWLObjectHierarchyProvider<E>, OWLEntitySetProvider<E>) - Constructor for class org.protege.editor.owl.ui.action.AbstractDeleteEntityAction
 
AbstractEditorKit<T extends EditorKitFactory> - Class in org.protege.editor.core.editorkit
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Oct 15, 2008

AbstractEditorKit(T) - Constructor for class org.protege.editor.core.editorkit.AbstractEditorKit
 
AbstractFontSizeAction - Class in org.protege.editor.core.ui.action
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 21-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

AbstractFontSizeAction() - Constructor for class org.protege.editor.core.ui.action.AbstractFontSizeAction
 
AbstractGraphModel - Class in uk.ac.man.cs.mig.util.graph.model.impl
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Feb 6, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

The AbstractGraphModel provides implementations of methods to add/remove listeners and fire GraphModelEvents.
AbstractGraphModel() - Constructor for class uk.ac.man.cs.mig.util.graph.model.impl.AbstractGraphModel
 
AbstractHierarchySelectorPanel<O extends org.semanticweb.owl.model.OWLObject> - Class in org.protege.editor.owl.ui.selector
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Jun 5, 2008

AbstractHierarchySelectorPanel(OWLEditorKit, boolean, OWLObjectHierarchyProvider<O>) - Constructor for class org.protege.editor.owl.ui.selector.AbstractHierarchySelectorPanel
 
AbstractIDGenerator - Class in org.protege.editor.owl.model.entity
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Jul 28, 2008

AbstractIDGenerator() - Constructor for class org.protege.editor.owl.model.entity.AbstractIDGenerator
 
AbstractImportSourcePage - Class in org.protege.editor.owl.ui.ontology.imports.wizard
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 12-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

AbstractImportSourcePage(Object, String, OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.ontology.imports.wizard.AbstractImportSourcePage
 
AbstractIntegerMetric - Class in org.protege.editor.owl.ui.metrics
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 20-Feb-2007

AbstractIntegerMetric(String) - Constructor for class org.protege.editor.owl.ui.metrics.AbstractIntegerMetric
 
AbstractModelManager - Class in org.protege.editor.core
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Mar 17, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

An abstract class that implements enough functionality from ModelManager to support adding, removing of ModelManagerListeners and firing of ModelManager events.

AbstractModelManager() - Constructor for class org.protege.editor.core.AbstractModelManager
 
AbstractMoveAxiomsWizardPanel - Class in org.protege.editor.owl.ui.ontology.wizard.move
Author: Matthew Horridge
The University Of Manchester
Information Management Group
Date: 11-Sep-2008

AbstractMoveAxiomsWizardPanel(Object, String, OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.ontology.wizard.move.AbstractMoveAxiomsWizardPanel
 
AbstractNamespaceManager - Class in org.protege.editor.owl.model.namespace
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 19-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

AbstractNamespaceManager() - Constructor for class org.protege.editor.owl.model.namespace.AbstractNamespaceManager
 
AbstractOntologyLibrary - Class in org.protege.editor.owl.model.library
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 23-Aug-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

AbstractOntologyLibrary() - Constructor for class org.protege.editor.owl.model.library.AbstractOntologyLibrary
 
AbstractOntologyRenderingViewComponent - Class in org.protege.editor.owl.ui.view
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 20-Mar-2007

AbstractOntologyRenderingViewComponent() - Constructor for class org.protege.editor.owl.ui.view.AbstractOntologyRenderingViewComponent
 
AbstractOntologySelectionStrategyAction - Class in org.protege.editor.owl.ui.action
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Jun 6, 2008

AbstractOntologySelectionStrategyAction() - Constructor for class org.protege.editor.owl.ui.action.AbstractOntologySelectionStrategyAction
 
AbstractOWLClassAxiomFrameSection<A extends org.semanticweb.owl.model.OWLAxiom,E> - Class in org.protege.editor.owl.ui.frame.cls
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Nov 28, 2008

AbstractOWLClassAxiomFrameSection(OWLEditorKit, String, String, OWLFrame<? extends OWLDescription>) - Constructor for class org.protege.editor.owl.ui.frame.cls.AbstractOWLClassAxiomFrameSection
 
AbstractOWLClassAxiomFrameSection(OWLEditorKit, String, OWLFrame<? extends OWLDescription>) - Constructor for class org.protege.editor.owl.ui.frame.cls.AbstractOWLClassAxiomFrameSection
 
AbstractOWLClassGraphModel - Class in uk.ac.man.cs.mig.coode.owlviz.model
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 08-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

AbstractOWLClassGraphModel(OWLModelManager, OWLObjectHierarchyProvider) - Constructor for class uk.ac.man.cs.mig.coode.owlviz.model.AbstractOWLClassGraphModel
 
AbstractOWLClassHierarchyViewComponent - Class in org.protege.editor.owl.ui.clshierarchy
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 19-May-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

AbstractOWLClassHierarchyViewComponent() - Constructor for class org.protege.editor.owl.ui.clshierarchy.AbstractOWLClassHierarchyViewComponent
 
AbstractOWLClassTreeAction - Class in org.protege.editor.owl.ui.clshierarchy
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Apr 24, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

AbstractOWLClassTreeAction(String, Icon, TreeSelectionModel) - Constructor for class org.protege.editor.owl.ui.clshierarchy.AbstractOWLClassTreeAction
 
AbstractOWLClassViewComponent - Class in org.protege.editor.owl.ui.view
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Mar 21, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

An OWLView that displays information about classes

AbstractOWLClassViewComponent() - Constructor for class org.protege.editor.owl.ui.view.AbstractOWLClassViewComponent
 
AbstractOWLDataPropertyViewComponent - Class in org.protege.editor.owl.ui.view
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 05-Jul-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

AbstractOWLDataPropertyViewComponent() - Constructor for class org.protege.editor.owl.ui.view.AbstractOWLDataPropertyViewComponent
 
AbstractOWLDescriptionEditor - Class in org.protege.editor.owl.ui.editor
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Feb 26, 2009

AbstractOWLDescriptionEditor() - Constructor for class org.protege.editor.owl.ui.editor.AbstractOWLDescriptionEditor
 
AbstractOWLEntityRenderer - Class in org.protege.editor.owl.ui.renderer
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 30-Aug-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

AbstractOWLEntityRenderer() - Constructor for class org.protege.editor.owl.ui.renderer.AbstractOWLEntityRenderer
 
AbstractOWLFrame<R> - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 19-Jan-2007

AbstractOWLFrame(OWLOntologyManager) - Constructor for class org.protege.editor.owl.ui.frame.AbstractOWLFrame
 
AbstractOWLFrameSection<R,A extends org.semanticweb.owl.model.OWLAxiom,E> - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 19-Jan-2007

AbstractOWLFrameSection(OWLEditorKit, String, String, OWLFrame<? extends R>) - Constructor for class org.protege.editor.owl.ui.frame.AbstractOWLFrameSection
 
AbstractOWLFrameSection(OWLEditorKit, String, OWLFrame<? extends R>) - Constructor for class org.protege.editor.owl.ui.frame.AbstractOWLFrameSection
 
AbstractOWLFrameSectionRow<R,A extends org.semanticweb.owl.model.OWLAxiom,E> - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 19-Jan-2007

AbstractOWLFrameSectionRow(OWLEditorKit, OWLFrameSection, OWLOntology, R, A) - Constructor for class org.protege.editor.owl.ui.frame.AbstractOWLFrameSectionRow
 
AbstractOWLFrameSectionRowObjectEditor<E> - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 15-Feb-2007

AbstractOWLFrameSectionRowObjectEditor() - Constructor for class org.protege.editor.owl.ui.frame.AbstractOWLFrameSectionRowObjectEditor
 
AbstractOWLIndividualViewComponent - Class in org.protege.editor.owl.ui.view
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 07-May-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

AbstractOWLIndividualViewComponent() - Constructor for class org.protege.editor.owl.ui.view.AbstractOWLIndividualViewComponent
 
AbstractOWLObjectHierarchyCreator - Class in org.protege.editor.owl.model.hierarchy.tabbed
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 16-Jul-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

AbstractOWLObjectHierarchyCreator(OWLDataFactory, OWLOntology, List<Edge>) - Constructor for class org.protege.editor.owl.model.hierarchy.tabbed.AbstractOWLObjectHierarchyCreator
 
AbstractOWLObjectHierarchyProvider<N extends org.semanticweb.owl.model.OWLObject> - Class in org.protege.editor.owl.model.hierarchy
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 01-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

A basic partial implementation of a hierarchy provider, which handles listeners and event firing, and also provides basic implementations of method such as getAncestors, getDescendants etc.

AbstractOWLObjectHierarchyProvider(OWLOntologyManager) - Constructor for class org.protege.editor.owl.model.hierarchy.AbstractOWLObjectHierarchyProvider
 
AbstractOWLObjectPropertyViewComponent - Class in org.protege.editor.owl.ui.view
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Apr 25, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

AbstractOWLObjectPropertyViewComponent() - Constructor for class org.protege.editor.owl.ui.view.AbstractOWLObjectPropertyViewComponent
 
AbstractOWLOntologyObjectHierarchyProvider<N extends org.semanticweb.owl.model.OWLObject> - Class in org.protege.editor.owl.model.hierarchy
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 01-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

AbstractOWLOntologyObjectHierarchyProvider(OWLOntologyManager) - Constructor for class org.protege.editor.owl.model.hierarchy.AbstractOWLOntologyObjectHierarchyProvider
 
AbstractOWLPropertyHierarchyProvider<E extends org.semanticweb.owl.model.OWLPropertyExpression<E,? extends org.semanticweb.owl.model.OWLPropertyRange>,P extends E> - Class in org.protege.editor.owl.model.hierarchy
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 23-Jan-2007

AbstractOWLPropertyHierarchyProvider(OWLOntologyManager) - Constructor for class org.protege.editor.owl.model.hierarchy.AbstractOWLPropertyHierarchyProvider
 
AbstractOWLPropertyHierarchyViewComponent<O extends org.semanticweb.owl.model.OWLProperty> - Class in org.protege.editor.owl.ui.view
User: nickdrummond Date: May 23, 2008
AbstractOWLPropertyHierarchyViewComponent() - Constructor for class org.protege.editor.owl.ui.view.AbstractOWLPropertyHierarchyViewComponent
 
AbstractOWLPropertyViewComponent<O extends org.semanticweb.owl.model.OWLProperty> - Class in org.protege.editor.owl.ui.view
User: nickdrummond Date: May 23, 2008
AbstractOWLPropertyViewComponent() - Constructor for class org.protege.editor.owl.ui.view.AbstractOWLPropertyViewComponent
 
AbstractOWLSelectionViewComponent - Class in org.protege.editor.owl.ui.view
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Apr 8, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

A view that has a notion of a selected OWLObject

AbstractOWLSelectionViewComponent() - Constructor for class org.protege.editor.owl.ui.view.AbstractOWLSelectionViewComponent
 
AbstractOWLViewComponent - Class in org.protege.editor.owl.ui.view
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Mar 18, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

AbstractOWLViewComponent() - Constructor for class org.protege.editor.owl.ui.view.AbstractOWLViewComponent
 
AbstractOWLWizardPanel - Class in org.protege.editor.owl.ui
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 12-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

AbstractOWLWizardPanel(Object, String, OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.AbstractOWLWizardPanel
 
AbstractPluginLoader<E> - Class in org.protege.editor.core.plugin
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Mar 22, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

A helper class, that takes the chore out of instantiating types of plugins.

AbstractPluginLoader(String, String) - Constructor for class org.protege.editor.core.plugin.AbstractPluginLoader
Creates a loader that will load (a subset) of the plugins that extend the specified plugin at the specified plugin extension point.
AbstractPreferenceNode<V> - Class in org.protege.editor.core.ui.preferences.node
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 08-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

AbstractPreferenceNode(String) - Constructor for class org.protege.editor.core.ui.preferences.node.AbstractPreferenceNode
 
AbstractPropertyDomainFrameSection<P extends org.semanticweb.owl.model.OWLProperty,A extends org.semanticweb.owl.model.OWLPropertyDomainAxiom> - Class in org.protege.editor.owl.ui.frame.property
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Oct 16, 2008

AbstractPropertyDomainFrameSection(OWLEditorKit, OWLFrame<P>) - Constructor for class org.protege.editor.owl.ui.frame.property.AbstractPropertyDomainFrameSection
 
AbstractPropertyDomainFrameSectionRow<P extends org.semanticweb.owl.model.OWLProperty,A extends org.semanticweb.owl.model.OWLPropertyDomainAxiom> - Class in org.protege.editor.owl.ui.frame.property
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Oct 16, 2008

AbstractPropertyDomainFrameSectionRow(OWLEditorKit, OWLFrameSection, OWLOntology, P, A) - Constructor for class org.protege.editor.owl.ui.frame.property.AbstractPropertyDomainFrameSectionRow
 
AbstractQueryNode - Class in org.protege.editor.owl.model.description
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 06-Oct-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

AbstractQueryNode(OWLDescriptionNode, OWLDescriptionNode) - Constructor for class org.protege.editor.owl.model.description.AbstractQueryNode
 
AbstractRasterFormat - Class in uk.ac.man.cs.mig.util.graph.export.impl
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Feb 20, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

AbstractRasterFormat(String) - Constructor for class uk.ac.man.cs.mig.util.graph.export.impl.AbstractRasterFormat
 
AbstractRestrictionCreatorPanel<P extends org.semanticweb.owl.model.OWLProperty,F extends org.semanticweb.owl.model.OWLObject> - Class in org.protege.editor.owl.ui.editor
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Sep 11, 2008

AbstractRestrictionCreatorPanel() - Constructor for class org.protege.editor.owl.ui.editor.AbstractRestrictionCreatorPanel
 
AbstractRestrictionCreatorPanel<P extends org.semanticweb.owl.model.OWLProperty,F extends org.semanticweb.owl.model.OWLObject> - Class in org.protege.editor.owl.ui.frame
Deprecated. use org.protege.editor.owl.ui.editor.AbstractRestrictionCreatorPanel
AbstractRestrictionCreatorPanel(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.frame.AbstractRestrictionCreatorPanel
Deprecated.  
AbstractRestrictionCreatorPanel.CardinalityRestrictionCreator<P extends org.semanticweb.owl.model.OWLProperty,F extends org.semanticweb.owl.model.OWLObject> - Class in org.protege.editor.owl.ui.editor
 
AbstractRestrictionCreatorPanel.CardinalityRestrictionCreator(String) - Constructor for class org.protege.editor.owl.ui.editor.AbstractRestrictionCreatorPanel.CardinalityRestrictionCreator
 
AbstractRestrictionCreatorPanel.RestrictionCreator<P extends org.semanticweb.owl.model.OWLProperty,F extends org.semanticweb.owl.model.OWLObject> - Class in org.protege.editor.owl.ui.editor
 
AbstractRestrictionCreatorPanel.RestrictionCreator(String) - Constructor for class org.protege.editor.owl.ui.editor.AbstractRestrictionCreatorPanel.RestrictionCreator
 
AbstractSelectionProvider - Class in org.protege.editor.core.ui.util
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Mar 21, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

AbstractSelectionProvider() - Constructor for class org.protege.editor.core.ui.util.AbstractSelectionProvider
 
AbstractSelectOntologiesPage - Class in org.protege.editor.owl.ui.ontology.wizard
Author: Matthew Horridge
The University Of Manchester
Information Management Group
Date: 23-Sep-2008

AbstractSelectOntologiesPage(Object, OWLEditorKit, String) - Constructor for class org.protege.editor.owl.ui.ontology.wizard.AbstractSelectOntologiesPage
 
AbstractSelectorPanel<O extends org.semanticweb.owl.model.OWLObject> - Class in org.protege.editor.owl.ui.selector
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 03-Jul-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

A common base class for selector panels, so that they all have the same preferred size etc.

AbstractSelectorPanel(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.selector.AbstractSelectorPanel
 
AbstractSelectorPanel(OWLEditorKit, boolean) - Constructor for class org.protege.editor.owl.ui.selector.AbstractSelectorPanel
 
AbstractSelectorPanel(OWLEditorKit, boolean, boolean) - Constructor for class org.protege.editor.owl.ui.selector.AbstractSelectorPanel
 
AbstractSuperClassHierarchyProvider - Class in org.protege.editor.owl.model.hierarchy
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 14-Sep-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

A "reverse hierarchy" of superclass relationships.

AbstractSuperClassHierarchyProvider(OWLOntologyManager) - Constructor for class org.protege.editor.owl.model.hierarchy.AbstractSuperClassHierarchyProvider
 
AbstractSuperClassHierarchyViewComponent - Class in org.protege.editor.owl.ui.clshierarchy
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 14-Sep-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

AbstractSuperClassHierarchyViewComponent() - Constructor for class org.protege.editor.owl.ui.clshierarchy.AbstractSuperClassHierarchyViewComponent
 
AbstractVectorFormat - Class in uk.ac.man.cs.mig.util.graph.export.impl
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Feb 27, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

AbstractVectorFormat() - Constructor for class uk.ac.man.cs.mig.util.graph.export.impl.AbstractVectorFormat
 
AbstractWizardPanel - Class in org.protege.editor.core.ui.wizard
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 12-May-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

AbstractWizardPanel(Object, String, EditorKit) - Constructor for class org.protege.editor.core.ui.wizard.AbstractWizardPanel
 
accept(OWLDescriptionNodeVisitor) - Method in class org.protege.editor.owl.model.description.OWLDescriptionLeafNode
 
accept(OWLDescriptionNodeVisitor) - Method in interface org.protege.editor.owl.model.description.OWLDescriptionNode
 
accept(OWLDescriptionNodeVisitor) - Method in class org.protege.editor.owl.model.description.OWLDescriptionNodeDifference
 
accept(OWLDescriptionNodeVisitor) - Method in class org.protege.editor.owl.model.description.OWLDescriptionNodePossibly
 
accept(OWLDescriptionNodeVisitor) - Method in class org.protege.editor.owl.model.description.OWLDescriptionNodeUnion
 
accept(File) - Method in class org.protege.editor.owl.model.OntologyFileFilter
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.core.ui.action.AbstractFontSizeAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.core.ui.action.CheckPluginsAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.core.ui.action.CloseAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.core.ui.action.NewAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.core.ui.action.OpenAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.core.ui.action.OpenRecentAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.core.ui.action.SaveAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.core.ui.action.SaveAsAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.core.ui.action.TimestampOutputAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.core.ui.menu.NullMenuAction
Invoked when an action occurs.
actionPerformed(ActionEvent) - Method in class org.protege.editor.core.ui.menu.OpenURLMenuAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.core.ui.preferences.ShowPreferencesAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.core.ui.view.ViewActionAdapter
Invoked when an action occurs.
actionPerformed(ActionEvent) - Method in class org.protege.editor.core.ui.wizard.WizardController
Calling method for the action listener interface.
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.action.AbstractDeleteEntityAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.action.AbstractOntologySelectionStrategyAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.action.AddCoveringAxiomAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.action.AmalgamateDisjointClassesAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.action.AmalgamateSuperClassesAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.action.ChangeOntologyURI
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.action.CloseOntologiesAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.action.CoerceDataPropertyValuesIntoPropertyRangeAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.action.ConvertAssertionsOnPunsToAnnotations
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.action.ConvertEntityURIsToLabels
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.action.ConvertMinOneToSomeValuesFromAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.action.ConvertToDefinedClassAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.action.ConvertToPrimitiveClassAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.action.CopyAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.action.CreateClassHierarchyAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.action.CreateDataPropertyAction
Invoked when an action occurs.
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.action.CreateEmptyOntologyAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.action.CreateInstanceOfSelectedClassAction
Invoked when an action occurs.
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.action.CreateInstanceOfThingAction
Invoked when an action occurs.
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.action.CreateNewChildAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.action.CreateNewObjectAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.action.CreateNewSiblingAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.action.CreateObjectPropertyAction
Deprecated. Invoked when an action occurs.
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.action.CreateSubClassAction
Deprecated. Invoked when an action occurs.
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.action.CreateSubDataPropertyAction
Deprecated.  
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.action.CreateSubObjectPropertyAction
Deprecated. Invoked when an action occurs.
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.action.CutAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.action.DeleteAction
 
actionPerformed(OWLEntity) - Method in class org.protege.editor.owl.ui.action.DeleteEntityAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.action.DuplicateSelectedClassAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.action.ExportInferredOntologyAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.action.FindAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.action.GatherOntologiesAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.action.LoadIntoCurrentModelAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.action.MakeAllIndividualsDifferent
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.action.MakePrimitiveSiblingsDisjoint
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.action.MergeOntologiesAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.action.MoveAxiomsToOntologyAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.action.OpenFromURIAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.action.PasteAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.action.RedoAction
Invoked when an action occurs.
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.action.RemoveAllDisjointAxiomsAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.action.RemoveLocalDisjointAxiomsAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.action.RemoveRedundantImportsAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.action.RenameEntitiesBySearchAndReplaceAction
 
actionPerformed(OWLEntity) - Method in class org.protege.editor.owl.ui.action.RenameEntityAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.action.SelectedOWLEntityAction
 
actionPerformed(OWLEntity) - Method in class org.protege.editor.owl.ui.action.SelectedOWLEntityAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.action.ShowFileAction
 
actionPerformed(OWLEntity) - Method in class org.protege.editor.owl.ui.action.ShowUsageAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.action.SplitDisjointClassesAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.action.SplitSubClassAxiomsAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.action.UndoAction
Invoked when an action occurs.
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.action.VisibilityManagerOntologySelectionStrategyAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.clshierarchy.AddSiblingClassAction
Deprecated. Invoked when an action occurs.
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.clshierarchy.AddSubClassAction
Deprecated. Invoked when an action occurs.
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.clshierarchy.ShowUsageAction
 
actionPerformed() - Method in interface org.protege.editor.owl.ui.frame.OWLFrameAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.framelist.CreateClosureAxiomAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.framelist.CreateNewEquivalentClassAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.framelist.MoveAxiomsToOntologyAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.framelist.PullIntoActiveOntologyAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.framelist.SwitchToDefiningOntologyAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.inference.ClassifyAction
Invoked when an action occurs.
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.inference.SelectedReasonerAction
Invoked when an action occurs.
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.library.ShowOntologyLibrariesAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.ontology.location.ShowOntologyLocationsAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.prefix.AddPrefixMappingAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.prefix.GeneratePrefixFromOntologyAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.prefix.RemovePrefixMappingAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.prefix.ShowPrefixMappingsAction
 
actionPerformed(ActionEvent) - Method in class org.protege.editor.owl.ui.view.DeleteIndividualAction
 
actionPerformed(ActionEvent) - Method in class uk.ac.man.cs.mig.coode.owlviz.command.AddExistentialGraphCommand
 
actionPerformed(ActionEvent) - Method in class uk.ac.man.cs.mig.coode.owlviz.command.ExportCommand
Invoked when an action occurs.
actionPerformed(ActionEvent) - Method in class uk.ac.man.cs.mig.coode.owlviz.command.HideAllClassesCommand
Invoked when an action occurs.
actionPerformed(ActionEvent) - Method in class uk.ac.man.cs.mig.coode.owlviz.command.HideClassCommand
Invoked when an action occurs.
actionPerformed(ActionEvent) - Method in class uk.ac.man.cs.mig.coode.owlviz.command.HideClassesPastRadiusCommand
Invoked when an action occurs.
actionPerformed(ActionEvent) - Method in class uk.ac.man.cs.mig.coode.owlviz.command.HideSubclassesCommand
Invoked when an action occurs.
actionPerformed(ActionEvent) - Method in class uk.ac.man.cs.mig.coode.owlviz.command.RefreshDisplayCommand
 
actionPerformed(ActionEvent) - Method in class uk.ac.man.cs.mig.coode.owlviz.command.SetOptionsCommand
Invoked when an action occurs.
actionPerformed(ActionEvent) - Method in class uk.ac.man.cs.mig.coode.owlviz.command.ShowAllClassesCommand
Invoked when an action occurs.
actionPerformed(ActionEvent) - Method in class uk.ac.man.cs.mig.coode.owlviz.command.ShowAnonymousClassesCommand
 
actionPerformed(ActionEvent) - Method in class uk.ac.man.cs.mig.coode.owlviz.command.ShowClassCommand
Invoked when an action occurs.
actionPerformed(ActionEvent) - Method in class uk.ac.man.cs.mig.coode.owlviz.command.ShowProjectInfo
Invoked when an action occurs.
actionPerformed(ActionEvent) - Method in class uk.ac.man.cs.mig.coode.owlviz.command.ShowSubclassesCommand
Invoked when an action occurs.
actionPerformed(ActionEvent) - Method in class uk.ac.man.cs.mig.coode.owlviz.command.ShowSuperclassesCommand
Invoked when an action occurs.
actionPerformed(ActionEvent) - Method in class uk.ac.man.cs.mig.coode.owlviz.command.ZoomInCommand
Invoked when an action occurs.
actionPerformed(ActionEvent) - Method in class uk.ac.man.cs.mig.coode.owlviz.command.ZoomOutCommand
Invoked when an action occurs.
ActionTarget - Interface in org.protege.editor.owl.ui.action
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 02-May-2007

activeOntologyContainsAxioms(OWLEntity) - Method in class org.protege.editor.owl.ui.renderer.OWLCellRenderer
 
ActiveOntologySelectionStrategy - Class in org.protege.editor.owl.model.selection.ontologies
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Jun 6, 2008

ActiveOntologySelectionStrategy(OWLModelManager) - Constructor for class org.protege.editor.owl.model.selection.ontologies.ActiveOntologySelectionStrategy
 
ActiveOntologyStrategyAction - Class in org.protege.editor.owl.ui.action
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Jun 6, 2008

ActiveOntologyStrategyAction() - Constructor for class org.protege.editor.owl.ui.action.ActiveOntologyStrategyAction
 
ActiveOntologyView - Class in org.protege.editor.owl.ui.ontology
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 13-May-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

ActiveOntologyView() - Constructor for class org.protege.editor.owl.ui.ontology.ActiveOntologyView
 
ADCFactory - Class in org.protege.editor.owl.model.description.anonymouscls
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Jan 8, 2009

ADCFactory(AnonymousDefinedClassManager) - Constructor for class org.protege.editor.owl.model.description.anonymouscls.ADCFactory
 
ADCRewriter - Class in org.protege.editor.owl.model.description.anonymouscls
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Jan 7, 2009

ADCRewriter(AnonymousDefinedClassManager, OWLDataFactory) - Constructor for class org.protege.editor.owl.model.description.anonymouscls.ADCRewriter
 
add(URI) - Method in class org.protege.editor.core.BookMarkedURIManager
 
add(EditorKitDescriptor) - Method in class org.protege.editor.core.editorkit.RecentEditorKitManager
 
add(Component, Object) - Method in class org.protege.editor.core.ui.preferences.PreferencesPanel
 
add(OWLDescription, String) - Method in class org.protege.editor.owl.model.cache.OWLExpressionUserCache
 
add(N, N) - Method in interface org.protege.editor.owl.ui.tree.OWLTreeDragAndDropHandler
 
add(N, N) - Method in class org.protege.editor.owl.ui.view.OWLPropertyTreeDropHandler
 
add(Node) - Method in interface uk.ac.man.cs.mig.util.graph.graph.Graph
Adds a Node to the graph.
add(Edge) - Method in interface uk.ac.man.cs.mig.util.graph.graph.Graph
Adds an Edge to the graph.
add(Node) - Method in class uk.ac.man.cs.mig.util.graph.graph.impl.DefaultGraph
Adds a Node to the graph.
add(Edge) - Method in class uk.ac.man.cs.mig.util.graph.graph.impl.DefaultGraph
Adds an Edge to the graph.
add(Object) - Method in class uk.ac.man.cs.mig.util.graph.model.impl.DefaultGraphModel
Adds an object to the model.
add(Object, Object) - Method in class uk.ac.man.cs.mig.util.graph.model.impl.DefaultGraphModel
Adds parent-child relationship/edge to the model.
add_escapes(String) - Method in exception uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.ParseException
Used to convert raw characters to their escaped version when these raw version cannot be used as part of an ASCII string literal.
addAction(ProtegeAction, String, String) - Method in class org.protege.editor.core.ui.view.View
 
addAction(Action) - Method in class org.protege.editor.core.ui.view.ViewBanner
Adds an action to the view header.
addAction(Action) - Method in class org.protege.editor.core.ui.view.ViewBar
 
addAction(Action) - Method in class org.protege.editor.core.ui.view.ViewBarComponent
 
addAction(ProtegeAction, String, String) - Method in class org.protege.editor.core.ui.view.ViewComponent
 
addAction(DisposableAction, String, String) - Method in class org.protege.editor.core.ui.view.ViewComponent
 
addAction(OWLSelectionViewAction, String, String) - Method in class org.protege.editor.owl.ui.view.AbstractOWLSelectionViewComponent
 
addAndClearAxioms(Set<OWLAxiom>) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.OWLVizAxiomGraphModel
This method clears all the map (invokes the clearMaps-method) at first.
addAxiom(A, OWLOntology) - Method in class org.protege.editor.owl.ui.frame.cls.AbstractOWLClassAxiomFrameSection
 
addAxiom(OWLAxiomAnnotationAxiom) - Method in class org.protege.editor.owl.ui.frame.OWLAxiomAnnotationsRoot
 
addAxiom(OWLClassAssertionAxiom, OWLOntology) - Method in class org.protege.editor.owl.ui.frame.OWLClassAssertionAxiomIndividualSection
 
addAxiom(OWLDisjointClassesAxiom, OWLOntology) - Method in class org.protege.editor.owl.ui.frame.OWLDisjointClassesAxiomFrameSection
 
addAxiom(OWLEquivalentClassesAxiom, OWLOntology) - Method in class org.protege.editor.owl.ui.frame.OWLEquivalentClassesAxiomFrameSection
 
addAxiom(OWLSubClassAxiom, OWLOntology) - Method in class org.protege.editor.owl.ui.frame.OWLSubClassAxiomFrameSection
 
addBoxedName(String) - Method in class org.protege.editor.owl.ui.renderer.OWLCellRenderer
 
addBusyListener(BackgroundTaskListener) - Method in class org.protege.editor.core.ui.progress.BackgroundTaskManager
 
addChangeListener(ChangeListener) - Method in class org.coode.dlquery.ResultsList
 
addChangeListener(ChangeListener) - Method in class org.protege.editor.core.ui.util.FilePathPanel
 
addChangeListener(ChangeListener) - Method in class org.protege.editor.core.ui.util.FileURIPanel
 
addChangeListener(ChangeListener) - Method in class org.protege.editor.core.ui.util.URLPanel
 
addChangeListener(ChangeListener) - Method in interface org.protege.editor.owl.model.selection.OWLSelectionHistoryManager
 
addChangeListener(ChangeListener) - Method in class org.protege.editor.owl.model.selection.OWLSelectionHistoryManagerImpl
 
addChangeListener(ChangeListener) - Method in interface org.protege.editor.owl.ui.action.ActionTarget
 
addChangeListener(ChangeListener) - Method in class org.protege.editor.owl.ui.clshierarchy.AbstractOWLClassHierarchyViewComponent
 
addChangeListener(ChangeListener) - Method in class org.protege.editor.owl.ui.explanation.ExplanationGeneratorPanel
 
addChangeListener(ChangeListener) - Method in class org.protege.editor.owl.ui.framelist.OWLFrameList2
 
addChangeListener(ChangeListener) - Method in class org.protege.editor.owl.ui.OWLIndividualListComponent
 
addChangeListener(ChangeListener) - Method in class org.protege.editor.owl.ui.view.AbstractOWLPropertyHierarchyViewComponent
 
addChangeListener(ChangeListener) - Method in class org.protege.editor.owl.ui.view.AnonymousClassesView
 
addChangeListener(ChangeListener) - Method in class org.protege.editor.owl.ui.view.ChangeListenerMediator
Adds a change listener that will be notified of state change events.
addChangeListener(ChangeListener) - Method in interface org.protege.editor.owl.ui.view.Copyable
Adds a change listener.
addChangeListener(ChangeListener) - Method in interface org.protege.editor.owl.ui.view.Cuttable
 
addChangeListener(ChangeListener) - Method in class org.protege.editor.owl.ui.view.OWLIndividualListViewComponent
 
addChangeListener(ChangeListener) - Method in interface org.protege.editor.owl.ui.view.Pasteable
 
addCheckListListener(CheckList.CheckListListener) - Method in class org.protege.editor.core.ui.util.CheckList
 
addCheckSelectionListener(ListSelectionListener) - Method in class org.protege.editor.core.ui.util.CheckTable
 
addChild(DefaultGraphNode) - Method in class uk.ac.man.cs.mig.util.graph.model.impl.DefaultGraphNode
 
addChildEdges(Object) - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultGraphGenerator
Creates the Edges that link the Node which represents the specified object to the Nodes that represent the children of the specified object.
addComponent(JComponent, JComponent, GridBagConstraints, int, int, int, int) - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.options.LayoutSpacingOptionsPage
Deprecated.  
AddCoveringAxiomAction - Class in org.protege.editor.owl.ui.action
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 03-Jul-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

AddCoveringAxiomAction() - Constructor for class org.protege.editor.owl.ui.action.AddCoveringAxiomAction
 
addCustomEntriesToTable(UIDefaults) - Method in class org.protege.editor.core.ui.util.ProtegePlasticTheme
 
addEditorKit(EditorKit) - Method in class org.protege.editor.core.editorkit.EditorKitManager
Adds a new EditorKit to the list of open EditorKits.
addedToNode(ComponentNode) - Method in class org.protege.editor.core.ui.view.View
 
addEquivalentObject(N) - Method in class org.protege.editor.owl.ui.tree.OWLObjectTreeNode
 
addEscapes(String) - Static method in error uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.TokenMgrError
Replaces unprintable characters by their espaced (or unicode escaped) equivalents in the given string
AddExistentialGraphCommand - Class in uk.ac.man.cs.mig.coode.owlviz.command
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Jul 7, 2005

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

AddExistentialGraphCommand() - Constructor for class uk.ac.man.cs.mig.coode.owlviz.command.AddExistentialGraphCommand
 
addExplanationFactory(Class<T>, ErrorExplainer.ErrorExplanationFactory<? super T>) - Method in class org.protege.editor.core.ui.error.ErrorExplainer
 
addExportFormat(ExportFormat) - Static method in class uk.ac.man.cs.mig.util.graph.export.ExportFormatManager
Adds an ExportFormat to the list of possible ExportFormats
addFilter(UsageFilter) - Method in class org.protege.editor.owl.ui.usage.UsageByEntityTreeModel
 
addFilter(UsageFilter) - Method in interface org.protege.editor.owl.ui.usage.UsageTreeModel
 
addFilters(Set<UsageFilter>) - Method in class org.protege.editor.owl.ui.usage.UsageByEntityTreeModel
 
addFilters(Set<UsageFilter>) - Method in interface org.protege.editor.owl.ui.usage.UsageTreeModel
 
addFrameListener(OWLFrameListener) - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrame
 
addFrameListener(OWLFrameListener) - Method in interface org.protege.editor.owl.ui.frame.OWLFrame
Adds a frame listener to this frame.
addGraphGeneratorListener(GraphGeneratorListener) - Method in interface uk.ac.man.cs.mig.util.graph.controller.GraphGenerator
Adds a listener that is informed of events generated by the GraphGenerator, such as a 'graph changed' event.
addGraphGeneratorListener(GraphGeneratorListener) - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultGraphGenerator
Adds a listener that is informed of events generated by the GraphGenerator, such as a 'graph changed' event.
addGraphModelListener(GraphModelListener) - Method in interface uk.ac.man.cs.mig.util.graph.model.GraphModel
Adds a listener to the model that is notified when events such a Node addition and removal take place.
addGraphModelListener(GraphModelListener) - Method in class uk.ac.man.cs.mig.util.graph.model.impl.AbstractGraphModel
Adds a listener to the model that is notified when events such a Node addition and removal take place.
addGraphSelectionModelListener(GraphSelectionModelListener) - Method in interface uk.ac.man.cs.mig.util.graph.controller.GraphSelectionModel
Adds a listener that is informed of changes in the selection.
addGraphSelectionModelListener(GraphSelectionModelListener) - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultGraphSelectionModel
Adds a listener that is informed of changes in the selection.
addGraphSelectionModelListener(GraphSelectionModelListener) - Method in class uk.ac.man.cs.mig.util.graph.ui.GraphComponent
 
addIndividual() - Method in class org.protege.editor.owl.ui.view.OWLIndividualListViewComponent
 
addIOListener(IOListener) - Method in interface org.protege.editor.owl.model.OWLModelManager
 
addIOListener(IOListener) - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
 
addItemListener(ItemListener) - Method in class org.protege.editor.owl.ui.OntologyFormatPanel
 
addLayoutComponent(Component, Object) - Method in class org.protege.editor.core.ui.preferences.PreferencesPanelLayoutManager
 
addLayoutComponent(String, Component) - Method in class org.protege.editor.core.ui.preferences.PreferencesPanelLayoutManager
 
addLibrary(OntologyLibrary) - Method in class org.protege.editor.owl.model.io.AutoMappedRepositoryURIMapper
 
addLibrary(OntologyLibrary) - Method in class org.protege.editor.owl.model.library.OntologyLibraryManager
 
addListener(ErrorLogListener) - Method in class org.protege.editor.core.ui.error.ErrorLog
 
addListener(OWLObjectHierarchyProviderListener<N>) - Method in class org.protege.editor.owl.model.hierarchy.AbstractOWLObjectHierarchyProvider
 
addListener(OWLObjectHierarchyProviderListener<N>) - Method in interface org.protege.editor.owl.model.hierarchy.OWLObjectHierarchyProvider
 
addListener(OntologySourcesListener) - Method in class org.protege.editor.owl.model.io.OntologySourcesManager
 
addListener(NamespaceManagerListener) - Method in class org.protege.editor.owl.model.namespace.AbstractNamespaceManager
 
addListener(NamespaceManagerListener) - Method in interface org.protege.editor.owl.model.namespace.NamespaceManager
 
addListener(OntologyVisibilityManagerListener) - Method in interface org.protege.editor.owl.model.OntologyVisibilityManager
 
addListener(OntologyVisibilityManagerListener) - Method in class org.protege.editor.owl.model.OntologyVisibilityManagerImpl
 
addListener(OWLModelManagerListener) - Method in interface org.protege.editor.owl.model.OWLModelManager
 
addListener(OWLModelManagerListener) - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
 
addListener(OWLSelectionModelListener) - Method in interface org.protege.editor.owl.model.selection.OWLSelectionModel
Adds an OWLSelectionModelListener to the list of listeners.
addListener(OWLSelectionModelListener) - Method in class org.protege.editor.owl.model.selection.OWLSelectionModelImpl
 
addListener(OWLEntityRendererListener) - Method in class org.protege.editor.owl.ui.renderer.AbstractOWLEntityRenderer
 
addListener(OWLEntityRendererListener) - Method in interface org.protege.editor.owl.ui.renderer.OWLModelManagerEntityRenderer
 
addListSelectionListener(ListSelectionListener) - Method in class org.protege.editor.core.update.PluginTable
 
addMapping(String, String) - Method in interface org.protege.editor.owl.model.namespace.NamespaceManager
Adds a prefix namespace mapping.
addMapping(String, String) - Method in class org.protege.editor.owl.model.namespace.NamespaceManagerImpl
 
addMapping(String, String) - Method in class org.protege.editor.owl.ui.prefix.PrefixMapperTableModel
 
addModelManagerListener(ModelManagerListener) - Method in class org.protege.editor.core.AbstractModelManager
 
addModelManagerListener(ModelManagerListener) - Method in interface org.protege.editor.core.ModelManager
 
addNode(PreferenceNode) - Method in class org.protege.editor.core.ui.preferences.node.PreferenceNodeGroup
 
addNode(Object) - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultGraphGenerator
Adds a Node/code> to the graph that represents the sepcified object.
addNodeClickedListener(NodeClickedListener) - Method in class uk.ac.man.cs.mig.util.graph.ui.GraphComponent
 
addNodeClickedListener(NodeClickedListener) - Method in class uk.ac.man.cs.mig.util.graph.ui.GraphView
Adds a NodeClickedListener which is informed when a node is clicked (pressed and released).
addObject(Collection<O>) - Method in class org.protege.editor.core.ui.list.RemovableObjectList
 
addOntologyChangeListener(OWLOntologyChangeListener) - Method in interface org.protege.editor.owl.model.OWLModelManager
Adds an ontology history listener.
addOntologyChangeListener(OWLOntologyChangeListener) - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
 
addOptionsChangedListener(OptionsChangedListener) - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.options.OWLVizViewOptions
 
addOptionsPage(OptionsPage, String) - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.options.OptionsDialog
 
addPanel(OWLDescriptionEditor) - Method in class org.protege.editor.owl.ui.editor.OWLClassDescriptionEditor
 
addParent(DefaultGraphNode) - Method in class uk.ac.man.cs.mig.util.graph.model.impl.DefaultGraphNode
 
addParentEdges(Object) - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultGraphGenerator
Creates the Edges that link the Node which represents the specified object to the Nodes that represent the parents of the specified object.
addPopupComponentListener(PopupComponentListener) - Method in class uk.ac.man.cs.mig.util.popup.PopupComponent
Adds a PopupComponentListener, which is informed when the popup closes.
addPopupPage(OWLObjectPopupPage) - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.popup.PopupManager
 
addPrefixMapping(String, String) - Method in interface org.protege.editor.owl.ui.prefix.PrefixMapper
Adds a prefix-value mapping
addPrefixMapping(String, String) - Method in class org.protege.editor.owl.ui.prefix.PrefixMapperImpl
 
AddPrefixMappingAction - Class in org.protege.editor.owl.ui.prefix
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 22-Sep-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

AddPrefixMappingAction(PrefixMapperTable) - Constructor for class org.protege.editor.owl.ui.prefix.AddPrefixMappingAction
 
addPropertyChangeListener(PropertyChangeListener) - Method in class org.protege.editor.core.ui.wizard.WizardModel
 
addPropertyChangeListener(PropertyChangeListener) - Method in class org.protege.editor.owl.model.selection.axioms.AbstractAxiomSelectionStrategy
 
addPropertyChangeListener(PropertyChangeListener) - Method in interface org.protege.editor.owl.model.selection.axioms.AxiomSelectionStrategy
 
addPropertyChangeListener(PropertyChangeListener) - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.options.OWLVizProperties
Deprecated. Adds a property changes listener that is informed of changes in properties.
addPropertyChangeListener(PropertyChangeListener) - Method in interface uk.ac.man.cs.mig.util.graph.controller.Controller
Adds a property change listener, which is informed when properties such as renderers, factories etc.
addPropertyChangeListener(PropertyChangeListener) - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultController
Adds a property change listener, which is informed when properties such as renderers, factories etc.
addRecent(URI) - Method in class org.protege.editor.owl.OWLEditorKit
 
addRelation(X, X) - Method in class org.protege.editor.owl.model.hierarchy.roots.TerminalElementFinder
 
addRendering(OWLEntity) - Method in interface org.protege.editor.owl.model.cache.OWLEntityRenderingCache
 
addRendering(OWLEntity) - Method in class org.protege.editor.owl.model.cache.OWLEntityRenderingCacheImpl
 
addRepository(OntologyRepository) - Method in class org.protege.editor.core.OntologyRepositoryManager
 
addRoot(OWLClass) - Method in class org.protege.editor.owl.model.hierarchy.cls.InferredOWLClassHierarchyProvider
 
addRow(OWLFrameSectionRow<R, A, E>) - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSection
 
addSection(OWLFrameSection<? extends Object, ? extends Object, ? extends Object>, int) - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrame
 
addSection(OWLFrameSection<? extends Object, ? extends Object, ? extends Object>) - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrame
 
addSelectedItems() - Method in class org.protege.editor.owl.ui.selector.OWLEntitySelectorPanel
 
addSelectionListener(ChangeListener) - Method in class org.protege.editor.owl.ui.frame.OWLIndividualAnnotationValueEditor
 
addSelectionListener(ChangeListener) - Method in class org.protege.editor.owl.ui.selector.AbstractSelectorPanel
 
addSelectionListener(ChangeListener) - Method in class org.protege.editor.owl.ui.selector.OWLClassSelectorPanel
 
addSelectionListener(ChangeListener) - Method in class org.protege.editor.owl.ui.selector.OWLDataPropertySelectorPanel
 
addSelectionListener(ChangeListener) - Method in class org.protege.editor.owl.ui.selector.OWLDataTypeSelectorPanel
 
addSelectionListener(ChangeListener) - Method in class org.protege.editor.owl.ui.selector.OWLIndividualSelectorPanel
 
addSelectionListener(ChangeListener) - Method in class org.protege.editor.owl.ui.selector.OWLObjectPropertySelectorPanel
 
addSelectionListener(OWLVizSelectionListener) - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizSelectionModel
 
addSelectionProviderListener(SelectionProviderListener) - Method in class org.protege.editor.core.ui.util.AbstractSelectionProvider
 
addSelectionProviderListener(SelectionProviderListener) - Method in interface org.protege.editor.core.ui.util.SelectionProvider
 
addSeparator() - Method in class org.protege.editor.core.ui.view.ViewBar
 
AddSiblingClassAction - Class in org.protege.editor.owl.ui.clshierarchy
Deprecated. - class hierarchy implements this
AddSiblingClassAction(OWLEditorKit, OWLObjectTree<OWLClass>) - Constructor for class org.protege.editor.owl.ui.clshierarchy.AddSiblingClassAction
Deprecated.  
addStatusChangedListener(InputVerificationStatusChangedListener) - Method in class org.protege.editor.core.ui.OpenFromURIPanel
 
addStatusChangedListener(InputVerificationStatusChangedListener) - Method in interface org.protege.editor.core.ui.util.VerifiedInputEditor
 
addStatusChangedListener(InputVerificationStatusChangedListener) - Method in class org.protege.editor.owl.ui.clsdescriptioneditor.ExpressionEditor
 
addStatusChangedListener(InputVerificationStatusChangedListener) - Method in class org.protege.editor.owl.ui.CreateDefinedClassPanel
 
addStatusChangedListener(InputVerificationStatusChangedListener) - Method in class org.protege.editor.owl.ui.editor.AbstractRestrictionCreatorPanel
 
addStatusChangedListener(InputVerificationStatusChangedListener) - Method in class org.protege.editor.owl.ui.editor.OWLClassDescriptionEditor
 
addStatusChangedListener(InputVerificationStatusChangedListener) - Method in class org.protege.editor.owl.ui.editor.OWLClassSelectorWrapper
 
addStatusChangedListener(InputVerificationStatusChangedListener) - Method in class org.protege.editor.owl.ui.editor.OWLDescriptionExpressionEditor
 
addStatusChangedListener(InputVerificationStatusChangedListener) - Method in class org.protege.editor.owl.ui.frame.OWLAnnotationEditor
 
addStatusChangedListener(InputVerificationStatusChangedListener) - Method in class org.protege.editor.owl.ui.frame.OWLClassDescriptionSetEditor
 
addStatusChangedListener(InputVerificationStatusChangedListener) - Method in class org.protege.editor.owl.ui.frame.OWLDataPropertyRelationshipEditor
 
addStatusChangedListener(InputVerificationStatusChangedListener) - Method in class org.protege.editor.owl.ui.frame.OWLGeneralAxiomEditor
 
addStatusChangedListener(InputVerificationStatusChangedListener) - Method in class org.protege.editor.owl.ui.frame.OWLObjectPropertyChainEditor
 
addStatusChangedListener(InputVerificationStatusChangedListener) - Method in class org.protege.editor.owl.ui.frame.SWRLRuleEditor
 
addStatusChangedListener(InputVerificationStatusChangedListener) - Method in class org.protege.editor.owl.ui.OWLEntityCreationPanel
 
addStatusChangedListener(InputVerificationStatusChangedListener) - Method in class org.protege.editor.owl.ui.rename.RenameEntitiesPanel
 
addStatusChangedListener(InputVerificationStatusChangedListener) - Method in class org.protege.editor.owl.ui.selector.AbstractSelectorPanel
 
AddSubClassAction - Class in org.protege.editor.owl.ui.clshierarchy
Deprecated. - class hierarchy implements this
AddSubClassAction(OWLEditorKit, OWLObjectTree<OWLClass>) - Constructor for class org.protege.editor.owl.ui.clshierarchy.AddSubClassAction
Deprecated.  
addTab(WorkspaceTab) - Method in class org.protege.editor.core.ui.workspace.TabbedWorkspace
Convenience method to add a workspace tab.
addThumbnailViewSourceListener(ThumbnailViewSourceListener) - Method in class uk.ac.man.cs.mig.util.graph.ui.GraphComponent
Adds a ThumbnailViewSourceListener to the ThumbnailViewSource so that the ThumbnailView is informed of events that it might be interested in.
addThumbnailViewSourceListener(ThumbnailViewSourceListener) - Method in interface uk.ac.man.cs.mig.util.graph.ui.ThumbnailViewSource
Adds a ThumbnailViewSourceListener to the ThumbnailViewSource so that the ThumbnailView is informed of events that it might be interested in.
addToPopupMenu(OWLFrameListPopupMenuAction<R>) - Method in class org.protege.editor.owl.ui.framelist.OWLFrameList2
 
addUndoManagerListener(UndoManagerListener) - Method in interface org.protege.editor.owl.model.history.HistoryManager
 
addUndoManagerListener(UndoManagerListener) - Method in class org.protege.editor.owl.model.history.HistoryManagerImpl
 
addVerticalStrut(int) - Method in class org.protege.editor.core.ui.preferences.PreferencesPanel
 
addView(View) - Method in class org.protege.editor.core.ui.view.ViewHolder
Adds a View to the holder.
addView(View, String) - Method in class org.protege.editor.core.ui.view.ViewsPane
 
addVisualisedObjectManagerListener(VisualisedObjectManagerListener) - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultVisualisedObjectManager
Adds a VisualisedObjectManagerListener, which is notified of events relating to visualised object addition/removal and change.
addVisualisedObjectManagerListener(VisualisedObjectManagerListener) - Method in interface uk.ac.man.cs.mig.util.graph.controller.VisualisedObjectManager
Adds a VisualisedObjectManagerListener, which is notified of events relating to visualised object addition/removal and change.
addWizardListener(WizardEventListener) - Method in class uk.ac.man.cs.mig.util.wizard.Wizard
Adds a listener to the Wizard
addWorkspace(Workspace) - Method in class org.protege.editor.core.ui.workspace.WorkspaceManager
 
adjustBeginLineColumn(int, int) - Method in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.SimpleCharStream
Method to adjust line and column numbers for the start of a token.
afterLoad(IOListenerEvent) - Method in class org.protege.editor.owl.model.io.IOListener
 
afterLoad(IOListenerEvent) - Method in class org.protege.editor.owl.model.io.OntologySourcesManager
 
afterSave(IOListenerEvent) - Method in class org.protege.editor.owl.model.io.IOListener
 
afterSave(IOListenerEvent) - Method in class org.protege.editor.owl.model.io.OntologySourcesManager
 
AllAxiomsStrategy - Class in org.protege.editor.owl.model.selection.axioms
User: nickdrummond Date: May 21, 2008
AllAxiomsStrategy() - Constructor for class org.protege.editor.owl.model.selection.axioms.AllAxiomsStrategy
 
ALLCLS_NAME - Static variable in class uk.ac.man.cs.mig.coode.owlviz.ui.renderer.OWLClsNodeRenderer
 
AllDifferentCreator - Class in org.protege.editor.owl.model.refactor
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 01-Sep-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

AllDifferentCreator(OWLDataFactory, OWLOntology, Set<OWLOntology>) - Constructor for class org.protege.editor.owl.model.refactor.AllDifferentCreator
 
AllLoadedOntologiesSelectionStrategy - Class in org.protege.editor.owl.model.selection.ontologies
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Jun 6, 2008

AllLoadedOntologiesSelectionStrategy(OWLModelManager) - Constructor for class org.protege.editor.owl.model.selection.ontologies.AllLoadedOntologiesSelectionStrategy
 
AllOntologiesStrategyAction - Class in org.protege.editor.owl.ui.action
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Jun 6, 2008

AllOntologiesStrategyAction() - Constructor for class org.protege.editor.owl.ui.action.AllOntologiesStrategyAction
 
ALPHA - Static variable in interface uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.DotParserConstants
 
ALPHANUM - Static variable in interface uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.DotParserConstants
 
AmalgamateDisjointClassesAction - Class in org.protege.editor.owl.ui.action
Author: Nick Drummond
The University Of Manchester
BioHealth Informatics Group
Date: May 19, 2008
AmalgamateDisjointClassesAction() - Constructor for class org.protege.editor.owl.ui.action.AmalgamateDisjointClassesAction
 
AmalgamateSuperClassesAction - Class in org.protege.editor.owl.ui.action
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 15-Aug-2007

AmalgamateSuperClassesAction() - Constructor for class org.protege.editor.owl.ui.action.AmalgamateSuperClassesAction
 
ANNOTATION_PROPERTY_COLOR_KEY - Static variable in class org.protege.editor.core.ProtegeProperties
 
ANNOTATION_PROPERTY_VIEW_CATEGORY - Static variable in class org.protege.editor.core.ProtegeProperties
 
AnnotationAxiomsStrategy - Class in org.protege.editor.owl.model.selection.axioms
User: nickdrummond Date: May 21, 2008
AnnotationAxiomsStrategy() - Constructor for class org.protege.editor.owl.model.selection.axioms.AnnotationAxiomsStrategy
 
AnnotationDeleter - Class in org.protege.editor.owl.model.refactor
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 08-Jul-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

AnnotationDeleter(Set<OWLOntology>) - Constructor for class org.protege.editor.owl.model.refactor.AnnotationDeleter
 
AnnotationPreferences - Class in org.protege.editor.owl.ui.preferences
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 14-Aug-2007

AnnotationPreferences() - Constructor for class org.protege.editor.owl.ui.preferences.AnnotationPreferences
 
AnnotationPreferencesPanel - Class in org.protege.editor.owl.ui.preferences
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 14-Aug-2007

AnnotationPreferencesPanel() - Constructor for class org.protege.editor.owl.ui.preferences.AnnotationPreferencesPanel
 
AnnotationRendererPanel - Class in org.protege.editor.owl.ui.renderer
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Apr 8, 2008

AnnotationRendererPanel(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.renderer.AnnotationRendererPanel
 
ANNOTATIONS - Static variable in class org.protege.editor.owl.ui.renderer.OWLRendererPreferences
 
AnnotationSelectorPanel - Class in org.protege.editor.owl.ui.ontology.wizard.move.byannotation
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Nov 28, 2008

AnnotationSelectorPanel(MoveAnnotationAxiomsByURIKit) - Constructor for class org.protege.editor.owl.ui.ontology.wizard.move.byannotation.AnnotationSelectorPanel
 
AnnotationURIList - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 01-Aug-2007

AnnotationURIList(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.frame.AnnotationURIList
 
AnnotationURIList.URIItem - Class in org.protege.editor.owl.ui.frame
 
AnnotationURIList.URIItem(URI) - Constructor for class org.protege.editor.owl.ui.frame.AnnotationURIList.URIItem
 
AnonymousClassesView - Class in org.protege.editor.owl.ui.view
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Nov 24, 2008

AnonymousClassesView() - Constructor for class org.protege.editor.owl.ui.view.AnonymousClassesView
 
AnonymousDefinedClassManager - Class in org.protege.editor.owl.model.description.anonymouscls
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Nov 24, 2008

AnonymousDefinedClassManager(OWLModelManager) - Constructor for class org.protege.editor.owl.model.description.anonymouscls.AnonymousDefinedClassManager
 
ANY_LANGUAGE - Static variable in class org.protege.editor.owl.ui.renderer.OWLRendererPreferences
 
append(String) - Method in class org.protege.editor.owl.ui.SpeciesValidationReportView
 
appendTerminalElements(Set<X>) - Method in class org.protege.editor.owl.model.hierarchy.roots.TerminalElementFinder
 
APPLICATION_DIR_PROP - Static variable in class org.protege.common.ProtegeProperties
 
applyChange(OWLOntologyChange) - Method in interface org.protege.editor.owl.model.OWLModelManager
 
applyChange(OWLOntologyChange) - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
 
applyChanges() - Method in class org.protege.editor.core.ui.preferences.PreferencesPanel
 
applyChanges() - Method in class org.protege.editor.core.update.PluginPreferencesPanel
 
applyChanges(List<? extends OWLOntologyChange>) - Method in interface org.protege.editor.owl.model.OWLModelManager
 
applyChanges(List<? extends OWLOntologyChange>) - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
 
applyChanges() - Method in class org.protege.editor.owl.ui.inference.DIGReasonerPreferencesPanel
 
applyChanges() - Method in class org.protege.editor.owl.ui.ontology.OntologyPreferencesPanel
 
applyChanges() - Method in class org.protege.editor.owl.ui.preferences.AnnotationPreferencesPanel
 
applyChanges() - Method in class org.protege.editor.owl.ui.preferences.GeneralPreferencesPanel
 
applyChanges() - Method in class org.protege.editor.owl.ui.preferences.NewEntitiesPreferencesPanel
 
applyChanges() - Method in class org.protege.editor.owl.ui.preferences.SavePreferencesPanel
 
applyChanges() - Method in class org.protege.editor.owl.ui.renderer.AnnotationRendererPanel
 
applyChanges() - Method in class org.protege.editor.owl.ui.renderer.RendererPreferencesPanel
 
applyChanges() - Method in class org.protege.editor.owl.ui.tree.OWLTreePreferencesPanel
 
applyChanges() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.options.OWLVizPreferencesPane
 
applyOptions() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.options.DisplayOptionsPage
 
applyOptions() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.options.DotProcessPathPage
Deprecated.  
applyOptions() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.options.GlobalOptionsPage
 
applyOptions() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.options.LayoutDirectionOptionsPage
 
applyOptions() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.options.LayoutSpacingOptionsPage
Deprecated.  
applyOptions() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.options.ModeOptionsPage
 
applyOptions() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.options.OptionsDialog
 
applyOptions() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.options.OptionsPage
 
applyOptions() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.options.UIOptionsPage
 
applyPreferences() - Method in class org.protege.editor.core.ui.preferences.PreferencesDialogPanel
 
areClassesDisjoint(OWLClass, OWLClass) - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.renderer.OWLClsNodeRenderer
Determines if a class is disjoint from another class
ASSERTED_HIERARCHY - Static variable in class uk.ac.man.cs.mig.coode.owlviz.ui.exportwizard.SpecifyHierarchyPage
 
AssertedClassHierarchyProvider - Class in org.protege.editor.owl.model.hierarchy
Deprecated. use AssertedClassHierarchyProvider2 Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 17-Jan-2007

AssertedClassHierarchyProvider(OWLOntologyManager) - Constructor for class org.protege.editor.owl.model.hierarchy.AssertedClassHierarchyProvider
Deprecated.  
AssertedClassHierarchyProvider2 - Class in org.protege.editor.owl.model.hierarchy
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 17-Jan-2007

AssertedClassHierarchyProvider2(OWLOntologyManager) - Constructor for class org.protege.editor.owl.model.hierarchy.AssertedClassHierarchyProvider2
 
AssertedSuperClassHierarchyProvider - Class in org.protege.editor.owl.model.hierarchy
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 14-Sep-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

AssertedSuperClassHierarchyProvider(OWLModelManager) - Constructor for class org.protege.editor.owl.model.hierarchy.AssertedSuperClassHierarchyProvider
 
attr_stmt() - Method in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.DotParser
 
AUTO_CLASSIFY_ON_ACTIVE_ONTOLOGY_CHANGE - Static variable in class org.protege.editor.owl.model.inference.OWLReasonerManagerImpl
 
AUTO_RELOAD_ON_ACTIVE_ONTOLOGY_CHANGE - Static variable in class org.protege.editor.owl.model.inference.OWLReasonerManagerImpl
 
AUTO_UPDATE_KEY - Static variable in class org.protege.editor.core.update.PluginManager
 
AutoCompleterMatcher - Interface in org.protege.editor.owl.ui.clsdescriptioneditor
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: May 4, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

AutoCompleterMatcherImpl - Class in org.protege.editor.owl.ui.clsdescriptioneditor
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: May 4, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

AutoCompleterMatcherImpl(OWLModelManager) - Constructor for class org.protege.editor.owl.ui.clsdescriptioneditor.AutoCompleterMatcherImpl
 
AutoIDException - Exception in org.protege.editor.owl.model.entity
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Jul 25, 2008

AutoIDException(String) - Constructor for exception org.protege.editor.owl.model.entity.AutoIDException
 
AutoIDGenerator - Interface in org.protege.editor.owl.model.entity
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Jul 25, 2008

AutoMappedRepositoryURIMapper - Class in org.protege.editor.owl.model.io
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Sep 1, 2008

A custom URIMapper.

AutoMappedRepositoryURIMapper(OWLModelManager) - Constructor for class org.protege.editor.owl.model.io.AutoMappedRepositoryURIMapper
 
axiom - Variable in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSectionRow
 
AxiomAnnotationButton - Class in org.protege.editor.owl.ui.framelist
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Sep 1, 2008

AxiomAnnotationButton(ActionListener) - Constructor for class org.protege.editor.owl.ui.framelist.AxiomAnnotationButton
 
AxiomAnnotationPanel - Class in org.protege.editor.owl.ui.axiom
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Sep 3, 2008

AxiomAnnotationPanel(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.axiom.AxiomAnnotationPanel
 
AxiomListFrame - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 19-Dec-2007

AxiomListFrame(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.frame.AxiomListFrame
 
AxiomListFrameSection - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 19-Dec-2007

AxiomListFrameSection(OWLEditorKit, OWLFrame<Set<OWLAxiom>>) - Constructor for class org.protege.editor.owl.ui.frame.AxiomListFrameSection
 
AxiomListFrameSectionRow - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 19-Dec-2007

AxiomListFrameSectionRow(OWLEditorKit, OWLFrameSection, OWLOntology, Set<OWLAxiom>, OWLAxiom) - Constructor for class org.protege.editor.owl.ui.frame.AxiomListFrameSectionRow
 
AxiomMetricsViewComponent - Class in org.protege.editor.owl.ui.metrics
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 30-Jul-2007

AxiomMetricsViewComponent() - Constructor for class org.protege.editor.owl.ui.metrics.AxiomMetricsViewComponent
 
AxiomSelectionStrategy - Interface in org.protege.editor.owl.model.selection.axioms
User: nickdrummond Date: May 20, 2008
AxiomTypeSelectorPanel - Class in org.protege.editor.owl.ui.ontology.wizard.move.bytype
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Nov 28, 2008

AxiomTypeSelectorPanel(MoveAxiomsByTypeKit) - Constructor for class org.protege.editor.owl.ui.ontology.wizard.move.bytype.AxiomTypeSelectorPanel
 
AxiomTypeStrategy - Class in org.protege.editor.owl.model.selection.axioms
User: nickdrummond Date: May 21, 2008
AxiomTypeStrategy() - Constructor for class org.protege.editor.owl.model.selection.axioms.AxiomTypeStrategy
 

B

BACK_BUTTON_ACTION_COMMAND - Static variable in class org.protege.editor.core.ui.wizard.Wizard
The String-based action command for the 'Back' button.
BACK_BUTTON_ENABLED_PROPERTY - Static variable in class org.protege.editor.core.ui.wizard.WizardModel
Property identification String for the Back button's enabled state
BACK_BUTTON_ICON_PROPERTY - Static variable in class org.protege.editor.core.ui.wizard.WizardModel
Property identification String for the Back button's icon
BACK_BUTTON_TEXT_PROPERTY - Static variable in class org.protege.editor.core.ui.wizard.WizardModel
Property identification String for the Back button's text
BackgroundTask - Interface in org.protege.editor.core.ui.progress
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: May 8, 2009

BackgroundTaskLabel - Class in org.protege.editor.core.ui.progress
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: May 8, 2009

BackgroundTaskLabel(BackgroundTaskManager) - Constructor for class org.protege.editor.core.ui.progress.BackgroundTaskLabel
 
BackgroundTaskListener - Interface in org.protege.editor.core.ui.progress
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: May 8, 2009

BackgroundTaskListPanel - Class in org.protege.editor.core.ui.progress
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: May 8, 2009

BackgroundTaskListPanel(BackgroundTaskManager) - Constructor for class org.protege.editor.core.ui.progress.BackgroundTaskListPanel
 
BackgroundTaskManager - Class in org.protege.editor.core.ui.progress
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: May 8, 2009

BackgroundTaskManager() - Constructor for class org.protege.editor.core.ui.progress.BackgroundTaskManager
 
backup(int) - Method in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.SimpleCharStream
 
BASE_URI_KEY - Static variable in class org.protege.editor.owl.ui.ontology.OntologyPreferences
 
BasicLinkedOWLObjectTable - Class in org.protege.editor.owl.ui.table
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 14-Sep-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

BasicLinkedOWLObjectTable(TableModel, OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.table.BasicLinkedOWLObjectTable
 
BasicOWLTable - Class in org.protege.editor.owl.ui.table
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 23-May-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

BasicOWLTable(TableModel) - Constructor for class org.protege.editor.owl.ui.table.BasicOWLTable
 
beforeLoad(IOListenerEvent) - Method in class org.protege.editor.owl.model.io.IOListener
 
beforeLoad(IOListenerEvent) - Method in class org.protege.editor.owl.model.io.OntologySourcesManager
 
beforeSave(IOListenerEvent) - Method in class org.protege.editor.owl.model.io.IOListener
 
beforeSave(IOListenerEvent) - Method in class org.protege.editor.owl.model.io.OntologySourcesManager
 
beginColumn - Variable in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.Token
beginLine and beginColumn describe the position of the first character of this token; endLine and endColumn describe the position of the last character of this token.
beginLine - Variable in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.Token
beginLine and beginColumn describe the position of the first character of this token; endLine and endColumn describe the position of the last character of this token.
BeginToken() - Method in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.SimpleCharStream
 
BookMarkedURIManager - Class in org.protege.editor.core
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 12-May-2007

BooleanPreferenceNode - Class in org.protege.editor.core.ui.preferences.node
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 08-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

BooleanPreferenceNode(String) - Constructor for class org.protege.editor.core.ui.preferences.node.BooleanPreferenceNode
 
BOTTOM_RESULTS_VIEW - Static variable in class org.protege.editor.core.ui.workspace.Workspace
 
bringViewToFront(String) - Method in class org.protege.editor.core.ui.view.ViewsPane
 
bringViewToFront(String) - Method in class org.protege.editor.core.ui.workspace.WorkspaceViewManager
If the selected workspace tab is a views tab, then this method requests that the view specified by the view id is brought to the front.
bringViewToFront(String) - Method in class org.protege.editor.core.ui.workspace.WorkspaceViewsTab
 
browseForFile() - Method in class org.protege.editor.core.ui.util.FilePathPanel
 
browseForFileName() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.exportwizard.SpecifyFileNamePage
Pops up the JFileChooser to allow a pathname to be selected, and a file name entered.
browseForFolder() - Method in class org.protege.editor.core.ui.util.FilePathPanel
 
browseForPath() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.options.DotProcessPathPage
Deprecated.  
bufcolumn - Variable in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.SimpleCharStream
 
buffer - Variable in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.SimpleCharStream
 
bufline - Variable in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.SimpleCharStream
 
bufpos - Variable in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.SimpleCharStream
 
buildMenu() - Method in class org.protege.editor.core.ui.menu.MenuBuilder
 
BUNDLE_DIR_PROP - Static variable in class org.protege.editor.core.BundleManager
 
BUNDLE_EXTRA_PROP - Static variable in class org.protege.editor.core.BundleManager
 
BUNDLE_EXTRA_SEPARATOR - Static variable in class org.protege.editor.core.BundleManager
 
BUNDLE_WITHOUT_PLUGIN_XML - Static variable in class org.protege.editor.core.BundleManager
 
BundleBuilder - Class in org.protege.editor.core.util
 
BundleBuilder(File) - Constructor for class org.protege.editor.core.util.BundleBuilder
 
BundleManager - Class in org.protege.editor.core
 
BundleManager(BundleContext) - Constructor for class org.protege.editor.core.BundleManager
 
BUTTON_DIMENSION - Static variable in class org.protege.editor.owl.ui.framelist.OWLFrameList2
 
BUTTON_MARGIN - Static variable in class org.protege.editor.owl.ui.framelist.OWLFrameList2
 

C

calculateTabHeight(int, int, int) - Method in class org.protege.editor.core.ui.tabbedpane.ViewTabbedPaneUI
 
calculateTabWidth(int, int, FontMetrics) - Method in class org.protege.editor.core.ui.tabbedpane.ViewTabbedPaneUI
 
canAcceptDrop(List<OWLObject>) - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSection
 
canAcceptDrop(List<OWLObject>) - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSectionRow
 
canAcceptDrop(List<OWLObject>) - Method in class org.protege.editor.owl.ui.frame.OWLAnnotationFrameSection
 
canAcceptDrop(List<OWLObject>) - Method in class org.protege.editor.owl.ui.frame.OWLClassAssertionAxiomIndividualSection
 
canAcceptDrop(List<OWLObject>) - Method in class org.protege.editor.owl.ui.frame.OWLClassAssertionAxiomTypeFrameSection
 
canAcceptDrop(List<OWLObject>) - Method in class org.protege.editor.owl.ui.frame.OWLDisjointClassesAxiomFrameSection
 
canAcceptDrop(List<OWLObject>) - Method in class org.protege.editor.owl.ui.frame.OWLEquivalentClassesAxiomFrameSection
 
canAcceptDrop(List<OWLObject>) - Method in interface org.protege.editor.owl.ui.frame.OWLFrameObject
 
canAcceptDrop(List<OWLObject>) - Method in class org.protege.editor.owl.ui.frame.OWLObjectPropertyRangeFrameSection
 
canAcceptDrop(List<OWLObject>) - Method in class org.protege.editor.owl.ui.frame.OWLSubClassAxiomFrameSection
 
canAcceptDrop(List<OWLObject>) - Method in class org.protege.editor.owl.ui.frame.property.AbstractPropertyDomainFrameSection
 
canAdd() - Method in class org.coode.dlquery.DLQueryResultsSection
 
canAdd() - Method in class org.protege.editor.core.ui.list.MList.TestHeader
 
canAdd() - Method in interface org.protege.editor.core.ui.list.MListSectionHeader
 
canAdd() - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSection
 
canAdd() - Method in class org.protege.editor.owl.ui.frame.AxiomListFrameSection
 
canAdd() - Method in class org.protege.editor.owl.ui.frame.ExplanationFrameSection
 
canAdd() - Method in class org.protege.editor.owl.ui.frame.InheritedAnonymousClassesFrameSection
 
canAdd() - Method in class org.protege.editor.owl.ui.frame.OWLAxiomAnnotationsFrameSection
 
canAdd() - Method in class org.protege.editor.owl.ui.frame.OWLIndirectImportsFrameSection
 
canAdd() - Method in class org.protege.editor.owl.ui.frame.SWRLRulesFrameSection
 
canAddRows() - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSection
Deprecated. use canAdd instead
canAddRows() - Method in interface org.protege.editor.owl.ui.frame.OWLFrameSection
Deprecated. use canAdd instead Determines if rows can be added to this section.
cancel() - Method in class org.protege.editor.core.ui.wizard.WizardController
 
cancel() - Method in class org.protege.editor.owl.ui.clsdescriptioneditor.OWLDescriptionAutoCompleter
 
CANCEL_BUTTON_ACTION_COMMAND - Static variable in class org.protege.editor.core.ui.wizard.Wizard
The String-based action command for the 'Cancel' button.
CANCEL_BUTTON_ENABLED_PROPERTY - Static variable in class org.protege.editor.core.ui.wizard.WizardModel
Property identification String for the Cancel button's enabled state
CANCEL_BUTTON_ICON_PROPERTY - Static variable in class org.protege.editor.core.ui.wizard.WizardModel
Property identification String for the Cancel button's icon
CANCEL_BUTTON_TEXT_PROPERTY - Static variable in class org.protege.editor.core.ui.wizard.WizardModel
Property identification String for the Cancel button's text
CANCEL_RETURN_CODE - Static variable in class org.protege.editor.core.ui.wizard.Wizard
Indicates that the 'Cancel' button was pressed to dispose the dialog, or the user pressed the dispose box in the corner of the window.
cancelButtonPressed() - Method in class uk.ac.man.cs.mig.util.wizard.Wizard
Called when the cancel button is pressed.
cancelPressed(WizardEvent) - Method in interface uk.ac.man.cs.mig.util.wizard.WizardEventListener
 
canCopy() - Method in class org.coode.dlquery.ResultsList
 
canCopy() - Method in class org.protege.editor.owl.ui.explanation.ExplanationGeneratorPanel
 
canCopy() - Method in class org.protege.editor.owl.ui.framelist.OWLFrameList2
 
canCopy() - Method in class org.protege.editor.owl.ui.view.AnonymousClassesView
 
canCopy() - Method in interface org.protege.editor.owl.ui.view.Copyable
Determines whether or not at least one OWLObject can be copied.
canCreateNew() - Method in class org.protege.editor.owl.ui.clshierarchy.ToldOWLClassHierarchyViewComponent
 
canCreateNew() - Method in class org.protege.editor.owl.ui.OWLIndividualListComponent
 
canCreateNew() - Method in interface org.protege.editor.owl.ui.view.CreateNewTarget
 
canCreateNew() - Method in class org.protege.editor.owl.ui.view.OWLIndividualListViewComponent
 
canCreateNewChild() - Method in class org.protege.editor.owl.ui.clshierarchy.ToldOWLClassHierarchyViewComponent
 
canCreateNewChild() - Method in interface org.protege.editor.owl.ui.view.CreateNewChildTarget
 
canCreateNewSibling() - Method in class org.protege.editor.owl.ui.clshierarchy.ToldOWLClassHierarchyViewComponent
 
canCreateNewSibling() - Method in interface org.protege.editor.owl.ui.view.CreateNewSiblingTarget
 
canCut() - Method in class org.protege.editor.owl.ui.framelist.OWLFrameList2
 
canCut() - Method in interface org.protege.editor.owl.ui.view.Cuttable
 
canDelete() - Method in class org.protege.editor.owl.ui.clshierarchy.AbstractOWLClassHierarchyViewComponent
 
canDelete() - Method in class org.protege.editor.owl.ui.framelist.OWLFrameList2
 
canDelete() - Method in class org.protege.editor.owl.ui.OWLIndividualListComponent
 
canDelete() - Method in class org.protege.editor.owl.ui.view.AbstractOWLPropertyHierarchyViewComponent
 
canDelete() - Method in class org.protege.editor.owl.ui.view.AnonymousClassesView
 
canDelete() - Method in interface org.protege.editor.owl.ui.view.Deleteable
 
canDelete() - Method in class org.protege.editor.owl.ui.view.OWLIndividualListViewComponent
 
canDisplay(OWLEntity) - Method in interface org.protege.editor.owl.model.OWLEntityDisplayProvider
 
canEdit(Object) - Method in class org.protege.editor.owl.ui.frame.OWLAnnonymousIndividualAnnotationValueEditor
 
canEdit(Object) - Method in interface org.protege.editor.owl.ui.frame.OWLAnnotationValueEditor
 
canEdit(Object) - Method in class org.protege.editor.owl.ui.frame.OWLConstantEditor
 
canEdit(Object) - Method in class org.protege.editor.owl.ui.frame.OWLIndividualAnnotationValueEditor
 
canGoBack() - Method in interface org.protege.editor.owl.model.selection.OWLSelectionHistoryManager
 
canGoBack() - Method in class org.protege.editor.owl.model.selection.OWLSelectionHistoryManagerImpl
 
canGoForward() - Method in interface org.protege.editor.owl.model.selection.OWLSelectionHistoryManager
 
canGoForward() - Method in class org.protege.editor.owl.model.selection.OWLSelectionHistoryManagerImpl
 
canLoad(URI) - Method in interface org.protege.editor.core.editorkit.EditorKitFactory
 
canLoad(URI) - Method in class org.protege.editor.owl.OWLEditorKitFactory
 
canPaste(List<OWLObject>) - Method in class org.protege.editor.owl.ui.framelist.OWLFrameList2
 
canPaste(List<OWLObject>) - Method in interface org.protege.editor.owl.ui.view.Pasteable
 
canPerform() - Method in class org.protege.editor.owl.ui.action.CopyAction
 
canPerform() - Method in class org.protege.editor.owl.ui.action.CreateNewChildAction
 
canPerform() - Method in class org.protege.editor.owl.ui.action.CreateNewObjectAction
 
canPerform() - Method in class org.protege.editor.owl.ui.action.CreateNewSiblingAction
 
canPerform() - Method in class org.protege.editor.owl.ui.action.CutAction
 
canPerform() - Method in class org.protege.editor.owl.ui.action.DeleteAction
 
canPerform() - Method in class org.protege.editor.owl.ui.action.FocusedComponentAction
 
canPerform(OWLEntity) - Method in interface org.protege.editor.owl.ui.action.OWLUIActionStrategy
 
canPerform() - Method in class org.protege.editor.owl.ui.action.PasteAction
 
canPerform(OWLClass) - Method in class org.protege.editor.owl.ui.clshierarchy.AbstractOWLClassTreeAction
 
canPerform(OWLClass) - Method in class org.protege.editor.owl.ui.clshierarchy.AddSiblingClassAction
Deprecated.  
canPerform(OWLClass) - Method in class org.protege.editor.owl.ui.clshierarchy.AddSubClassAction
Deprecated.  
canPerformAction() - Method in class org.protege.editor.owl.ui.framelist.OWLFrameList2
 
canPerformDrag() - Method in class org.protege.editor.owl.ui.transfer.OWLObjectDragGestureListener
 
canRedo() - Method in interface org.protege.editor.owl.model.history.HistoryManager
 
canRedo() - Method in class org.protege.editor.owl.model.history.HistoryManagerImpl
 
canShowEntity(OWLEntity) - Method in class org.protege.editor.owl.ui.view.AbstractOWLSelectionViewComponent
 
canUndo() - Method in interface org.protege.editor.owl.model.history.HistoryManager
 
canUndo() - Method in class org.protege.editor.owl.model.history.HistoryManagerImpl
 
CARDI_NAME - Static variable in class uk.ac.man.cs.mig.coode.owlviz.ui.renderer.OWLClsNodeRenderer
 
CATEGORY - Static variable in class org.protege.editor.core.ui.view.ViewComponentPluginJPFImpl
 
CHANGED_ANNOTATION_URIS - Static variable in class org.protege.editor.owl.model.selection.axioms.AnnotationAxiomsStrategy
 
CHANGED_AXIOM_TYPE - Static variable in class org.protege.editor.owl.model.selection.axioms.AxiomTypeStrategy
 
changeFontSize(int) - Method in class org.protege.editor.core.ui.workspace.Workspace
 
ChangeListenerMediator - Class in org.protege.editor.owl.ui.view
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 07-Oct-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

A helper class that manages change listeners.

ChangeListenerMediator() - Constructor for class org.protege.editor.owl.ui.view.ChangeListenerMediator
 
ChangeOntologyURI - Class in org.protege.editor.owl.ui.action
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 07-Mar-2007

ChangeOntologyURI() - Constructor for class org.protege.editor.owl.ui.action.ChangeOntologyURI
 
check(String) - Method in class org.protege.editor.owl.ui.clsdescriptioneditor.OWLClassAxiomChecker
 
check(String) - Method in class org.protege.editor.owl.ui.clsdescriptioneditor.OWLDataRangeChecker
 
check(String) - Method in class org.protege.editor.owl.ui.clsdescriptioneditor.OWLDescriptionChecker
 
check(String) - Method in interface org.protege.editor.owl.ui.clsdescriptioneditor.OWLExpressionChecker
 
check(String) - Method in class org.protege.editor.owl.ui.clsdescriptioneditor.OWLPropertyChainChecker
 
check(String) - Method in class org.protege.editor.owl.ui.clsdescriptioneditor.SWRLRuleChecker
 
CHECK_DELAY_KEY - Static variable in class org.protege.editor.owl.ui.clsdescriptioneditor.ExpressionEditorPreferences
 
checkAll(boolean) - Method in class org.protege.editor.core.ui.util.CheckTable
 
checkAll(boolean) - Method in class org.protege.editor.owl.ui.selector.OWLOntologySelectorPanel2
 
checkExpression() - Method in class org.protege.editor.owl.ui.clsdescriptioneditor.ExpressionEditor
 
checkForDownloads() - Method in class org.protege.editor.core.update.PluginManager
 
checkForUpdates() - Method in class org.protege.editor.core.update.PluginManager
 
checkForUpdatesUI() - Method in class org.protege.editor.core.update.PluginManager
 
checkImport() - Method in class org.protege.editor.owl.ui.ontology.imports.wizard.ImportVerificationPage
 
checkImports() - Method in interface org.protege.editor.owl.ui.ontology.imports.wizard.ImportVerifier
 
checkImports() - Method in class org.protege.editor.owl.ui.ontology.imports.wizard.LibraryVerifier
 
checkImports() - Method in class org.protege.editor.owl.ui.ontology.imports.wizard.LoadedOntologyImportVerifier
 
checkImports() - Method in class org.protege.editor.owl.ui.ontology.imports.wizard.LocalFileImportVerifier
 
checkImports() - Method in class org.protege.editor.owl.ui.ontology.imports.wizard.URLImportFileVerifier
 
CheckList - Class in org.protege.editor.core.ui.util
Author: Matthew Horridge
The University Of Manchester
Information Management Group
Date: 22-Sep-2008

CheckList(JList) - Constructor for class org.protege.editor.core.ui.util.CheckList
 
CheckList.CheckListListener - Interface in org.protege.editor.core.ui.util
 
CheckPluginsAction - Class in org.protege.editor.core.ui.action
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Nov 6, 2008

CheckPluginsAction() - Constructor for class org.protege.editor.core.ui.action.CheckPluginsAction
 
checkpoint() - Method in class org.protege.editor.owl.model.entity.IterativeAutoIDGenerator
 
checkpoint() - Method in class org.protege.editor.owl.model.entity.PseudoRandomAutoIDGenerator
 
checkpoint() - Method in interface org.protege.editor.owl.model.entity.Revertable
 
checkSources() - Method in class org.protege.editor.owl.model.io.OntologySourcesManager
 
CheckTable<O> - Class in org.protege.editor.core.ui.util
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Jun 2, 2008

Implements a two column table where the left column is a list of checkboxes and the right is a list of objects of type O (provided by setData()).

CheckTable(String) - Constructor for class org.protege.editor.core.ui.util.CheckTable
 
CheckTableModel<O> - Class in org.protege.editor.core.ui.util
 
childAdded(GraphModelEvent) - Method in interface uk.ac.man.cs.mig.util.graph.event.GraphModelListener
 
childObjectAdded(VisualisedObjectManagerEvent) - Method in interface uk.ac.man.cs.mig.util.graph.event.VisualisedObjectManagerListener
 
childObjectRemoved(VisualisedObjectManagerEvent) - Method in interface uk.ac.man.cs.mig.util.graph.event.VisualisedObjectManagerListener
 
childRemoved(GraphModelEvent) - Method in interface uk.ac.man.cs.mig.util.graph.event.GraphModelListener
 
children() - Method in class org.protege.editor.owl.ui.tree.OWLObjectTreeNode
 
chooseFolder(Component, String) - Static method in class org.protege.editor.core.ui.util.UIUtil
 
chooseOWLFile(String) - Method in class org.protege.editor.owl.ui.UIHelper
 
CLASS_COLOR_KEY - Static variable in class org.protege.editor.core.ProtegeProperties
 
CLASS_PARAM_NAME - Static variable in class org.protege.editor.core.plugin.PluginProperties
This is the name of the class that should be instantiated for a plugin, which is a "standard" parameter.
CLASS_VIEW_CATEGORY - Static variable in class org.protege.editor.core.ProtegeProperties
 
ClassCountMetric - Class in org.protege.editor.owl.ui.metrics
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 20-Feb-2007

ClassCountMetric() - Constructor for class org.protege.editor.owl.ui.metrics.ClassCountMetric
 
classify() - Method in class org.protege.editor.owl.model.inference.NoOpReasoner
 
ClassifyAction - Class in org.protege.editor.owl.ui.inference
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 18-May-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

ClassifyAction() - Constructor for class org.protege.editor.owl.ui.inference.ClassifyAction
 
classifyAsynchronously() - Method in interface org.protege.editor.owl.model.inference.OWLReasonerManager
 
classifyAsynchronously() - Method in class org.protege.editor.owl.model.inference.OWLReasonerManagerImpl
Classifies the current active ontologies.
ClassRadiusDialog - Class in uk.ac.man.cs.mig.coode.owlviz.ui
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Feb 24, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

ClassRadiusDialog(Frame, boolean) - Constructor for class uk.ac.man.cs.mig.coode.owlviz.ui.ClassRadiusDialog
 
ClassRadiusDialogPage - Class in uk.ac.man.cs.mig.coode.owlviz.ui
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Feb 12, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

ClassRadiusDialogPage(boolean) - Constructor for class uk.ac.man.cs.mig.coode.owlviz.ui.ClassRadiusDialogPage
 
ClassReferencingAxiomsStrategy - Class in org.protege.editor.owl.model.selection.axioms
User: nickdrummond Date: May 20, 2008
ClassReferencingAxiomsStrategy() - Constructor for class org.protege.editor.owl.model.selection.axioms.ClassReferencingAxiomsStrategy
 
CLEAN_BUNDLES_ON_EXIT - Static variable in class org.protege.editor.core.BundleManager
 
CLEAN_DELETED_PLUGINS - Static variable in class org.protege.editor.core.BundleManager
 
cleanNodeMap() - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultGraphGenerator
Removes any nodes in the nodeMap that represent objects that aren't in the list of objects held by the VisualisedObjectManager.
clear() - Method in class org.protege.editor.core.editorkit.RecentEditorKitManager
 
clear() - Method in class org.protege.editor.core.prefs.JavaBackedPreferencesImpl
 
clear() - Method in interface org.protege.editor.core.prefs.Preferences
 
clear() - Method in class org.protege.editor.core.ui.error.ErrorLog
 
clear() - Method in class org.protege.editor.owl.model.cache.OWLObjectRenderingCache
 
clear() - Method in class org.protege.editor.owl.model.hierarchy.roots.EquivalenceRelation
 
clear() - Method in class org.protege.editor.owl.model.hierarchy.roots.TerminalElementFinder
 
clear() - Method in class org.protege.editor.owl.ui.editor.OWLClassDescriptionEditor
 
clear() - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSection
 
clear() - Method in class org.protege.editor.owl.ui.frame.AxiomListFrameSection
 
clear() - Method in class org.protege.editor.owl.ui.frame.editor.OWLDataPropertySetEditor
 
clear() - Method in class org.protege.editor.owl.ui.frame.editor.OWLObjectPropertySetEditor
 
clear() - Method in class org.protege.editor.owl.ui.frame.ExplanationFrameSection
 
clear() - Method in class org.protege.editor.owl.ui.frame.InferredAxiomsFrameSection
 
clear() - Method in class org.protege.editor.owl.ui.frame.InheritedAnonymousClassesFrameSection
 
clear() - Method in class org.protege.editor.owl.ui.frame.OWLAnnotationEditor
 
clear() - Method in class org.protege.editor.owl.ui.frame.OWLAnnotationFrameSection
 
clear() - Method in class org.protege.editor.owl.ui.frame.OWLAxiomAnnotationsFrameSection
 
clear() - Method in class org.protege.editor.owl.ui.frame.OWLClassAssertionAxiomIndividualSection
 
clear() - Method in class org.protege.editor.owl.ui.frame.OWLClassAssertionAxiomTypeFrameSection
 
clear() - Method in class org.protege.editor.owl.ui.frame.OWLClassDescriptionSetEditor
 
clear() - Method in class org.protege.editor.owl.ui.frame.OWLConstantEditor
 
clear() - Method in class org.protege.editor.owl.ui.frame.OWLDataPropertyAssertionAxiomFrameSection
 
clear() - Method in class org.protege.editor.owl.ui.frame.OWLDataPropertyEditor
 
clear() - Method in class org.protege.editor.owl.ui.frame.OWLDataPropertyRangeFrameSection
 
clear() - Method in class org.protege.editor.owl.ui.frame.OWLDataPropertyRelationshipEditor
 
clear() - Method in class org.protege.editor.owl.ui.frame.OWLDataRangeEditor
 
clear() - Method in class org.protege.editor.owl.ui.frame.OWLDifferentIndividualsAxiomFrameSection
 
clear() - Method in class org.protege.editor.owl.ui.frame.OWLDisjointClassesAxiomFrameSection
 
clear() - Method in class org.protege.editor.owl.ui.frame.OWLDisjointDataPropertiesFrameSection
 
clear() - Method in class org.protege.editor.owl.ui.frame.OWLDisjointObjectPropertiesFrameSection
 
clear() - Method in class org.protege.editor.owl.ui.frame.OWLEquivalentClassesAxiomFrameSection
 
clear() - Method in class org.protege.editor.owl.ui.frame.OWLEquivalentDataPropertiesFrameSection
 
clear() - Method in class org.protege.editor.owl.ui.frame.OWLEquivalentObjectPropertiesAxiomFrameSection
 
clear() - Method in interface org.protege.editor.owl.ui.frame.OWLFrameSectionRowObjectEditor
 
clear() - Method in class org.protege.editor.owl.ui.frame.OWLGeneralAxiomEditor
 
clear() - Method in class org.protege.editor.owl.ui.frame.OWLGeneralClassAxiomsFrameSection
 
clear() - Method in class org.protege.editor.owl.ui.frame.OWLImportsDeclarationEditor
 
clear() - Method in class org.protege.editor.owl.ui.frame.OWLImportsDeclarationFrameSection
 
clear() - Method in class org.protege.editor.owl.ui.frame.OWLIndirectImportsFrameSection
 
clear() - Method in class org.protege.editor.owl.ui.frame.OWLIndividualEditor
 
clear() - Method in class org.protege.editor.owl.ui.frame.OWLIndividualSetEditor
 
clear() - Method in class org.protege.editor.owl.ui.frame.OWLInverseObjectPropertiesAxiomFrameSection
 
clear() - Method in class org.protege.editor.owl.ui.frame.OWLNegativeDataPropertyAssertionFrameSection
 
clear() - Method in class org.protege.editor.owl.ui.frame.OWLNegativeObjectPropertyAssertionFrameSection
 
clear() - Method in class org.protege.editor.owl.ui.frame.OWLObjectPropertyAssertionAxiomFrameSection
 
clear() - Method in class org.protege.editor.owl.ui.frame.OWLObjectPropertyChainEditor
 
clear() - Method in class org.protege.editor.owl.ui.frame.OWLObjectPropertyEditor
 
clear() - Method in class org.protege.editor.owl.ui.frame.OWLObjectPropertyIndividualPairEditor
 
clear() - Method in class org.protege.editor.owl.ui.frame.OWLObjectPropertyRangeFrameSection
 
clear() - Method in class org.protege.editor.owl.ui.frame.OWLOntologyAnnotationAxiomFrameSection
 
clear() - Method in class org.protege.editor.owl.ui.frame.OWLPropertyChainAxiomFrameSection
 
clear() - Method in class org.protege.editor.owl.ui.frame.OWLSameIndividualsAxiomFrameSection
 
clear() - Method in class org.protege.editor.owl.ui.frame.OWLSubClassAxiomFrameSection
 
clear() - Method in class org.protege.editor.owl.ui.frame.OWLSubDataPropertyAxiomSuperPropertyFrameSection
 
clear() - Method in class org.protege.editor.owl.ui.frame.OWLSubObjectPropertyAxiomSuperPropertyFrameSection
 
clear() - Method in class org.protege.editor.owl.ui.frame.property.AbstractPropertyDomainFrameSection
 
clear() - Method in class org.protege.editor.owl.ui.frame.SWRLRuleEditor
 
clear() - Method in class org.protege.editor.owl.ui.frame.SWRLRulesFrameSection
 
clearExplanationFactories() - Method in class org.protege.editor.core.ui.error.ErrorExplainer
 
clearLastSelectedEntity(OWLEntity) - Method in interface org.protege.editor.owl.model.selection.OWLSelectionModel
If any of the last selected entities are equal to the specified entity then the selection is cleared.
clearLastSelectedEntity(OWLEntity) - Method in class org.protege.editor.owl.model.selection.OWLSelectionModelImpl
 
clearListeners() - Method in class org.protege.editor.core.ui.error.ErrorLog
 
clearListeners() - Method in class org.protege.editor.owl.ui.view.ChangeListenerMediator
Removes all change listeners
clearMaps() - Method in class uk.ac.man.cs.mig.coode.owlviz.model.OWLVizAxiomGraphModel
Resets the child2ParentMap, the parent2ChildMap, the nodes Set an the edge map
clearOntologies() - Method in class org.protege.editor.owl.model.inference.NoOpReasoner
 
clearSections() - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrame
 
close() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizView
 
CloseAction - Class in org.protege.editor.core.ui.action
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 13-Jul-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

CloseAction() - Constructor for class org.protege.editor.core.ui.action.CloseAction
 
closeGraph() - Method in class uk.ac.man.cs.mig.util.graph.outputrenderer.impl.DotOutputGraphRenderer
 
CloseOntologiesAction - Class in org.protege.editor.owl.ui.action
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Sep 30, 2008

CloseOntologiesAction() - Constructor for class org.protege.editor.owl.ui.action.CloseOntologiesAction
 
closeView() - Method in class org.protege.editor.core.ui.view.View
 
closeView(View) - Method in class org.protege.editor.core.ui.view.ViewContainer
 
ClosureAxiomFactory - Class in org.protege.editor.owl.model.util
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 14-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

ClosureAxiomFactory(OWLObjectProperty, OWLDataFactory, Set<OWLOntology>) - Constructor for class org.protege.editor.owl.model.util.ClosureAxiomFactory
 
ClosureAxiomFactory(OWLDataFactory, OWLObjectProperty, OWLDataFactory) - Constructor for class org.protege.editor.owl.model.util.ClosureAxiomFactory
Deprecated. use ClosureAxiomFactory(OWLDataFactory df, OWLObjectProperty objectProperty) Strange!
CoerceDataPropertyValuesIntoPropertyRangeAction - Class in org.protege.editor.owl.ui.action
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 13-Aug-2007

CoerceDataPropertyValuesIntoPropertyRangeAction() - Constructor for class org.protege.editor.owl.ui.action.CoerceDataPropertyValuesIntoPropertyRangeAction
 
collapseSplitPane(ViewContainer.TabViewContainerSplitPane) - Method in class org.protege.editor.core.ui.view.ViewContainer
 
collapseTabViewContainer(ViewContainer) - Method in class org.protege.editor.core.ui.view.ViewContainer
 
column - Variable in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.SimpleCharStream
 
COMMA - Static variable in interface uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.DotParserConstants
 
commit() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.byannotation.AnnotationSelectorPanel
 
commit() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.byprofile.ProfileSelectorPanel
 
commit() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.byreference.SelectSignaturePanel
 
commit() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.bytype.AxiomTypeSelectorPanel
 
commit() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.common.SignatureDependentSelectionPreviewPanel
 
commit() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.MoveAxiomsKitConfigurationPanel
 
commit() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.SelectAxiomsPanel
 
commitPrefixes() - Method in class org.protege.editor.owl.ui.prefix.PrefixMapperTableModel
 
compare(ToolBarActionPlugin, ToolBarActionPlugin) - Method in class org.protege.editor.core.ui.action.ToolBarActionComparator
 
compare(OWLDescription, OWLDescription) - Method in class org.protege.editor.owl.ui.OWLDescriptionComparator
 
compare(E, E) - Method in class org.protege.editor.owl.ui.OWLEntityComparator
 
compare(E, E) - Method in class org.protege.editor.owl.ui.OWLObjectComparator
 
compare(E, E) - Method in class org.protege.editor.owl.ui.OWLObjectComparatorAdapter
 
compareTo(AnnotationURIList.URIItem) - Method in class org.protege.editor.owl.ui.frame.AnnotationURIList.URIItem
 
COMPLEMENT_NAME - Static variable in class uk.ac.man.cs.mig.coode.owlviz.ui.renderer.OWLClsNodeRenderer
 
COMPONENT_PADDING - Static variable in interface org.protege.editor.core.ui.util.UIConstants
 
ComponentFactory - Class in org.protege.editor.core.ui.util
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Mar 22, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

ComponentFactory() - Constructor for class org.protege.editor.core.ui.util.ComponentFactory
 
CONDITIONS_EQUIVALENT_CLASSES_HEADER - Static variable in class org.protege.editor.owl.ProtegeOWLProperties
 
CONDITIONS_SUPERCLASSES_HEADER - Static variable in class org.protege.editor.owl.ProtegeOWLProperties
 
ConditionsPopupPage - Class in uk.ac.man.cs.mig.coode.owlviz.ui.popup
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Sep 23, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

ConditionsPopupPage(OWLEditorKit) - Constructor for class uk.ac.man.cs.mig.coode.owlviz.ui.popup.ConditionsPopupPage
 
ConfigurableFrameListExplanationHandler - Class in org.protege.editor.owl.ui.framelist
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 24-Jan-2008

ConfigurableFrameListExplanationHandler(OWLEditorKit, OWLReasoner, OWLOntology) - Constructor for class org.protege.editor.owl.ui.framelist.ConfigurableFrameListExplanationHandler
 
ConfigurableOWLVizView - Interface in uk.ac.man.cs.mig.coode.owlviz.ui
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Dec 10, 2008

Hack required to maintain OWLPropViz compatibility

configureEditorKit(EditorKit) - Method in interface org.protege.editor.core.OntologyRepositoryEntry
If this ontology gets loaded, this method will be called before loading starts in order to provided the opportunity to configure an editorkit (e.g.
contains(X) - Method in class org.protege.editor.owl.model.hierarchy.roots.Path
 
contains(URI) - Method in class org.protege.editor.owl.model.library.folder.FolderOntologyLibrary
 
contains(URI) - Method in interface org.protege.editor.owl.model.library.OntologyLibrary
Determines whether or not the library contains an ontology.
contains(Object) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.AbstractOWLClassGraphModel
 
contains(Object) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.OWLOntologyImportsGraphModel
 
contains(Object) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.OWLVizAxiomGraphModel
 
contains(Node) - Method in interface uk.ac.man.cs.mig.util.graph.graph.Graph
Determines if the Graph isShown the specified Node.
contains(Edge) - Method in interface uk.ac.man.cs.mig.util.graph.graph.Graph
Determines if the Graph isShown the specified Edge.
contains(Node) - Method in class uk.ac.man.cs.mig.util.graph.graph.impl.DefaultGraph
Determines if the Graph isShown the specified Node.
contains(Edge) - Method in class uk.ac.man.cs.mig.util.graph.graph.impl.DefaultGraph
Determines if the Graph isShown the specified Edge.
contains(Object) - Method in interface uk.ac.man.cs.mig.util.graph.model.GraphModel
Tests whether or not the specified object is contained within the graph model.
contains(Object) - Method in class uk.ac.man.cs.mig.util.graph.model.impl.DefaultGraphModel
Tests whether or not the specified object is contained within the graph model.
containsNamespace(String) - Method in interface org.protege.editor.owl.model.namespace.NamespaceManager
Determines whether or not the namespace map contains the specified namespace.
containsNamespace(String) - Method in class org.protege.editor.owl.model.namespace.NamespaceManagerImpl
 
containsReference(OWLOntology, P) - Method in class org.protege.editor.owl.model.hierarchy.AbstractOWLPropertyHierarchyProvider
 
containsReference(P) - Method in class org.protege.editor.owl.model.hierarchy.AbstractOWLPropertyHierarchyProvider
 
containsReference(OWLClass) - Method in class org.protege.editor.owl.model.hierarchy.AssertedClassHierarchyProvider
Deprecated.  
containsReference(OWLClass) - Method in class org.protege.editor.owl.model.hierarchy.AssertedClassHierarchyProvider2
 
containsReference(OWLClass) - Method in class org.protege.editor.owl.model.hierarchy.AssertedSuperClassHierarchyProvider
 
containsReference(OWLClass) - Method in class org.protege.editor.owl.model.hierarchy.cls.InferredOWLClassHierarchyProvider
 
containsReference(OWLClass) - Method in class org.protege.editor.owl.model.hierarchy.cls.InferredSuperClassHierarchyProvider
 
containsReference(OWLObject) - Method in class org.protege.editor.owl.model.hierarchy.IndividualsByInferredTypeHierarchyProvider
 
containsReference(OWLObject) - Method in class org.protege.editor.owl.model.hierarchy.IndividualsByTypeHierarchyProvider
 
containsReference(OWLOntology, OWLDataProperty) - Method in class org.protege.editor.owl.model.hierarchy.OWLDataPropertyHierarchyProvider
 
containsReference(N) - Method in interface org.protege.editor.owl.model.hierarchy.OWLObjectHierarchyProvider
 
containsReference(OWLOntology, OWLObjectProperty) - Method in class org.protege.editor.owl.model.hierarchy.OWLObjectPropertyHierarchyProvider
 
containsReference(OWLOntology) - Method in class org.protege.editor.owl.model.hierarchy.OWLOntologyHierarchyProvider
 
containsTab(String) - Method in class org.protege.editor.core.ui.workspace.TabbedWorkspace
 
containsView(String) - Method in class org.protege.editor.core.ui.view.ViewHolder
Tests to see whether the holder contains a view with a particular id.
containsView(String) - Method in class org.protege.editor.core.ui.view.ViewsPane
 
Controller - Interface in uk.ac.man.cs.mig.util.graph.controller
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Jan 9, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

A controller, which ties together the various models and views.
controller - Variable in class uk.ac.man.cs.mig.util.graph.ui.GraphView
 
ConvertAssertionsOnPunsToAnnotations - Class in org.protege.editor.owl.ui.action
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 23-Jul-2007

ConvertAssertionsOnPunsToAnnotations() - Constructor for class org.protege.editor.owl.ui.action.ConvertAssertionsOnPunsToAnnotations
 
ConvertEntityURIsToIdentifierPattern - Class in org.protege.editor.owl.model.refactor.ontology
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 30-Aug-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

ConvertEntityURIsToIdentifierPattern(OWLModelManager, Set<OWLOntology>) - Constructor for class org.protege.editor.owl.model.refactor.ontology.ConvertEntityURIsToIdentifierPattern
 
ConvertEntityURIsToLabels - Class in org.protege.editor.owl.ui.action
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 30-Aug-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

ConvertEntityURIsToLabels() - Constructor for class org.protege.editor.owl.ui.action.ConvertEntityURIsToLabels
 
convertException(ParserException) - Static method in class org.protege.editor.owl.model.parser.ParserUtil
 
ConvertMinOneToSomeValuesFromAction - Class in org.protege.editor.owl.ui.action
Author: Nick Drummond
The University Of Manchester
BioHealth Informatics Group
Date: May 19, 2008
ConvertMinOneToSomeValuesFromAction() - Constructor for class org.protege.editor.owl.ui.action.ConvertMinOneToSomeValuesFromAction
 
ConvertToDefinedClassAction - Class in org.protege.editor.owl.ui.action
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 15-Feb-2007

ConvertToDefinedClassAction() - Constructor for class org.protege.editor.owl.ui.action.ConvertToDefinedClassAction
 
ConvertToPrimitiveClassAction - Class in org.protege.editor.owl.ui.action
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 24-Aug-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

ConvertToPrimitiveClassAction() - Constructor for class org.protege.editor.owl.ui.action.ConvertToPrimitiveClassAction
 
Copyable - Interface in org.protege.editor.owl.ui.view
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 07-Oct-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

Components that support the copying of OWLObjects should implement this interface, so that they will work with the copy action on the edit menu.

CopyAction - Class in org.protege.editor.owl.ui.action
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 07-Oct-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

CopyAction() - Constructor for class org.protege.editor.owl.ui.action.CopyAction
 
copyFile(File, File) - Static method in class org.protege.editor.core.FileUtils
Copies a file to the specified location.
copyFileToDirectory(File, File) - Static method in class org.protege.editor.core.FileUtils
Copies a file to the specified directory.
CopyOptionPanel - Class in org.protege.editor.owl.ui.ontology.imports.missing
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 17-Oct-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

CopyOptionPanel(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.ontology.imports.missing.CopyOptionPanel
 
CoveringAxiomFactory - Class in org.protege.editor.owl.model.util
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 03-Jul-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

CoveringAxiomFactory(OWLDataFactory, OWLObjectHierarchyProvider<OWLClass>) - Constructor for class org.protege.editor.owl.model.util.CoveringAxiomFactory
 
createAndEditRow() - Method in class org.protege.editor.owl.ui.prefix.PrefixMapperTable
 
createAndSetupNewEditorKit(EditorKitFactoryPlugin) - Method in class org.protege.editor.core.ProtegeManager
Creates and sets up a new (probably empty) .
createAnonymousClass(OWLOntology, OWLDescription) - Method in class org.protege.editor.owl.model.description.anonymouscls.AnonymousDefinedClassManager
 
createAntialiasedOptionPanel() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.exportwizard.SelectFormatPage
Creates a panel that provides the option to decide whether the export should be antialiased or not.
createAxiom(E) - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSection
 
createAxiom(E) - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSectionRow
 
createAxiom(OWLAxiom) - Method in class org.protege.editor.owl.ui.frame.AxiomListFrameSection
 
createAxiom(OWLAxiom) - Method in class org.protege.editor.owl.ui.frame.AxiomListFrameSectionRow
 
createAxiom(OWLAxiom) - Method in class org.protege.editor.owl.ui.frame.ExplanationFrameSection
 
createAxiom(OWLAxiom) - Method in class org.protege.editor.owl.ui.frame.ExplanationFrameSectionRow
 
createAxiom(OWLAxiom) - Method in class org.protege.editor.owl.ui.frame.InferredAxiomsFrameSection
 
createAxiom(OWLAxiom) - Method in class org.protege.editor.owl.ui.frame.InferredAxiomsFrameSectionRow
 
createAxiom(OWLDescription) - Method in class org.protege.editor.owl.ui.frame.InheritedAnonymousClassesFrameSection
 
createAxiom(OWLDescription) - Method in class org.protege.editor.owl.ui.frame.InheritedAnonymousClassesFrameSectionRow
 
createAxiom(OWLAnnotation) - Method in class org.protege.editor.owl.ui.frame.OWLAnnotationFrameSection
 
createAxiom(OWLAnnotation) - Method in class org.protege.editor.owl.ui.frame.OWLAnnotationsFrameSectionRow
 
createAxiom(OWLAnnotation) - Method in class org.protege.editor.owl.ui.frame.OWLAxiomAnnotationsFrameSection
 
createAxiom(OWLAnnotation) - Method in class org.protege.editor.owl.ui.frame.OWLAxiomAnnotationsFrameSectionRow
 
createAxiom(OWLIndividual) - Method in class org.protege.editor.owl.ui.frame.OWLClassAssertionAxiomIndividualSection
 
createAxiom(OWLIndividual) - Method in class org.protege.editor.owl.ui.frame.OWLClassAssertionAxiomIndividualSectionRow
 
createAxiom(OWLDescription) - Method in class org.protege.editor.owl.ui.frame.OWLClassAssertionAxiomTypeFrameSection
 
createAxiom(OWLDescription) - Method in class org.protege.editor.owl.ui.frame.OWLClassAssertionAxiomTypeFrameSectionRow
 
createAxiom(OWLDataPropertyConstantPair) - Method in class org.protege.editor.owl.ui.frame.OWLDataPropertyAssertionAxiomFrameSection
 
createAxiom(OWLDataPropertyConstantPair) - Method in class org.protege.editor.owl.ui.frame.OWLDataPropertyAssertionAxiomFrameSectionRow
 
createAxiom(OWLDescription) - Method in class org.protege.editor.owl.ui.frame.OWLDataPropertyDomainFrameSection
 
createAxiom(OWLDescription) - Method in class org.protege.editor.owl.ui.frame.OWLDataPropertyDomainFrameSectionRow
 
createAxiom(OWLDataRange) - Method in class org.protege.editor.owl.ui.frame.OWLDataPropertyRangeFrameSection
 
createAxiom(OWLDataRange) - Method in class org.protege.editor.owl.ui.frame.OWLDataPropertyRangeFrameSectionRow
 
createAxiom(Set<OWLIndividual>) - Method in class org.protege.editor.owl.ui.frame.OWLDifferentIndividualAxiomFrameSectionRow
 
createAxiom(Set<OWLIndividual>) - Method in class org.protege.editor.owl.ui.frame.OWLDifferentIndividualsAxiomFrameSection
 
createAxiom(Set<OWLDescription>) - Method in class org.protege.editor.owl.ui.frame.OWLDisjointClassesAxiomFrameSection
 
createAxiom(Set<OWLDescription>) - Method in class org.protege.editor.owl.ui.frame.OWLDisjointClassesAxiomFrameSectionRow
 
createAxiom(Set<OWLDataProperty>) - Method in class org.protege.editor.owl.ui.frame.OWLDisjointDataPropertiesFrameSection
 
createAxiom(Set<OWLDataProperty>) - Method in class org.protege.editor.owl.ui.frame.OWLDisjointDataPropertiesFrameSectionRow
 
createAxiom(Set<OWLObjectProperty>) - Method in class org.protege.editor.owl.ui.frame.OWLDisjointObjectPropertiesAxiomFrameSectionRow
 
createAxiom(Set<OWLObjectProperty>) - Method in class org.protege.editor.owl.ui.frame.OWLDisjointObjectPropertiesFrameSection
 
createAxiom(OWLDescription) - Method in class org.protege.editor.owl.ui.frame.OWLEquivalentClassesAxiomFrameSection
 
createAxiom(OWLDescription) - Method in class org.protege.editor.owl.ui.frame.OWLEquivalentClassesAxiomFrameSectionRow
 
createAxiom(OWLDataProperty) - Method in class org.protege.editor.owl.ui.frame.OWLEquivalentDataPropertiesFrameSection
 
createAxiom(OWLDataProperty) - Method in class org.protege.editor.owl.ui.frame.OWLEquivalentDataPropertiesFrameSectionRow
 
createAxiom(OWLObjectProperty) - Method in class org.protege.editor.owl.ui.frame.OWLEquivalentObjectPropertiesAxiomFrameSection
 
createAxiom(OWLObjectProperty) - Method in class org.protege.editor.owl.ui.frame.OWLEquivalentObjectPropertiesAxiomFrameSectionRow
 
createAxiom(OWLClassAxiom) - Method in class org.protege.editor.owl.ui.frame.OWLGeneralClassAxiomFrameSectionRow
 
createAxiom(OWLClassAxiom) - Method in class org.protege.editor.owl.ui.frame.OWLGeneralClassAxiomsFrameSection
 
createAxiom(OWLImportsDeclaration) - Method in class org.protege.editor.owl.ui.frame.OWLImportsDeclarationAxiomFrameSectionRow
 
createAxiom(OWLImportsDeclaration) - Method in class org.protege.editor.owl.ui.frame.OWLImportsDeclarationFrameSection
 
createAxiom(OWLImportsDeclaration) - Method in class org.protege.editor.owl.ui.frame.OWLIndirectImportsFrameSection
 
createAxiom(OWLObjectProperty) - Method in class org.protege.editor.owl.ui.frame.OWLInverseObjectPropertiesAxiomFrameSection
 
createAxiom(OWLObjectProperty) - Method in class org.protege.editor.owl.ui.frame.OWLInverseObjectPropertiesAxiomFrameSectionRow
 
createAxiom(OWLDataPropertyConstantPair) - Method in class org.protege.editor.owl.ui.frame.OWLNegativeDataPropertyAssertionFrameSection
 
createAxiom(OWLDataPropertyConstantPair) - Method in class org.protege.editor.owl.ui.frame.OWLNegativeDataPropertyAssertionFrameSectionRow
 
createAxiom(OWLObjectPropertyIndividualPair) - Method in class org.protege.editor.owl.ui.frame.OWLNegativeObjectPropertyAssertionFrameSection
 
createAxiom(OWLObjectPropertyIndividualPair) - Method in class org.protege.editor.owl.ui.frame.OWLNegativeObjectPropertyAssertionFrameSectionRow
 
createAxiom(OWLObjectPropertyIndividualPair) - Method in class org.protege.editor.owl.ui.frame.OWLObjectPropertyAssertionAxiomFrameSection
 
createAxiom(OWLObjectPropertyIndividualPair) - Method in class org.protege.editor.owl.ui.frame.OWLObjectPropertyAssertionAxiomFrameSectionRow
 
createAxiom(OWLDescription) - Method in class org.protege.editor.owl.ui.frame.OWLObjectPropertyDomainFrameSection
 
createAxiom(OWLDescription) - Method in class org.protege.editor.owl.ui.frame.OWLObjectPropertyDomainFrameSectionRow
 
createAxiom(OWLDescription) - Method in class org.protege.editor.owl.ui.frame.OWLObjectPropertyRangeFrameSection
 
createAxiom(OWLDescription) - Method in class org.protege.editor.owl.ui.frame.OWLObjectPropertyRangeFrameSectionRow
 
createAxiom(OWLAnnotation) - Method in class org.protege.editor.owl.ui.frame.OWLOntologyAnnotationAxiomFrameSection
 
createAxiom(OWLAnnotation) - Method in class org.protege.editor.owl.ui.frame.OWLOntologyAnnotationAxiomFrameSectionRow
 
createAxiom(List<OWLObjectPropertyExpression>) - Method in class org.protege.editor.owl.ui.frame.OWLPropertyChainAxiomFrameSection
 
createAxiom(List<OWLObjectPropertyExpression>) - Method in class org.protege.editor.owl.ui.frame.OWLPropertyChainAxiomFrameSectionRow
 
createAxiom(Set<OWLIndividual>) - Method in class org.protege.editor.owl.ui.frame.OWLSameIndividualsAxiomFrameSection
 
createAxiom(Set<OWLIndividual>) - Method in class org.protege.editor.owl.ui.frame.OWLSameIndividualsAxiomFrameSectionRow
 
createAxiom(OWLDescription) - Method in class org.protege.editor.owl.ui.frame.OWLSubClassAxiomFrameSection
 
createAxiom(OWLDescription) - Method in class org.protege.editor.owl.ui.frame.OWLSubClassAxiomFrameSectionRow
 
createAxiom(OWLDataProperty) - Method in class org.protege.editor.owl.ui.frame.OWLSubDataPropertyAxiomSuperPropertyFrameSection
 
createAxiom(OWLDataProperty) - Method in class org.protege.editor.owl.ui.frame.OWLSubDataPropertyAxiomSuperPropertyFrameSectionRow
 
createAxiom(OWLObjectProperty) - Method in class org.protege.editor.owl.ui.frame.OWLSubObjectPropertyAxiomSuperPropertyFrameSection
 
createAxiom(OWLObjectProperty) - Method in class org.protege.editor.owl.ui.frame.OWLSubObjectPropertyAxiomSuperPropertyFrameSectionRow
 
createAxiom(SWRLRule) - Method in class org.protege.editor.owl.ui.frame.SWRLRuleFrameSectionRow
 
createAxiom(SWRLRule) - Method in class org.protege.editor.owl.ui.frame.SWRLRulesFrameSection
 
createChild(Set<E>, E) - Method in class org.protege.editor.owl.ui.action.OWLObjectHierarchyCreator
 
createChildEntity() - Method in class org.protege.editor.owl.ui.action.OWLObjectHierarchyCreator
 
CreateClassHierarchyAction - Class in org.protege.editor.owl.ui.action
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 17-Jul-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

CreateClassHierarchyAction() - Constructor for class org.protege.editor.owl.ui.action.CreateClassHierarchyAction
 
CreateClassHierarchyWizard - Class in org.protege.editor.owl.ui.hierarchy.creation
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 17-Jul-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

CreateClassHierarchyWizard(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.hierarchy.creation.CreateClassHierarchyWizard
 
CreateClosureAxiomAction - Class in org.protege.editor.owl.ui.framelist
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Nov 24, 2008

CreateClosureAxiomAction() - Constructor for class org.protege.editor.owl.ui.framelist.CreateClosureAxiomAction
 
createComponent(Map<String, String>) - Method in class org.protege.editor.core.ui.view.ViewComponentFactory
 
createComponentLabel(String) - Method in class org.protege.editor.core.ui.preferences.node.PreferenceNodePanel
 
createConstant() - Method in class org.protege.editor.owl.ui.UIHelper
 
createCustomTab(String) - Method in class org.protege.editor.core.ui.workspace.CustomWorkspaceTabsManager.CustomTabPlugin
 
createCustomTab(String) - Method in class org.protege.editor.owl.model.OWLCustomWorkspaceTabsManager.CustomOWLTabPlugin
 
CreateDataPropertyAction - Class in org.protege.editor.owl.ui.action
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 03-Feb-2007

CreateDataPropertyAction() - Constructor for class org.protege.editor.owl.ui.action.CreateDataPropertyAction
 
createDefaultColumnsFromModel() - Method in class org.protege.editor.core.ui.util.CheckTable
 
createDefaultDivider() - Method in class org.protege.editor.core.ui.split.ViewSplitPaneUI
Creates the default divider.
CreateDefinedClassPanel - Class in org.protege.editor.owl.ui
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Nov 24, 2008

CreateDefinedClassPanel(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.CreateDefinedClassPanel
 
createEdge(Node, Node, int) - Method in interface uk.ac.man.cs.mig.util.graph.factory.EdgeFactory
Creates an Edge
createEdge(Node, Node, int) - Method in class uk.ac.man.cs.mig.util.graph.factory.impl.DefaultEdgeFactory
Creates an Edge
createEditorKit() - Method in interface org.protege.editor.core.editorkit.EditorKitFactory
 
createEditorKit() - Method in class org.protege.editor.owl.OWLEditorKitFactory
 
CreateEmptyOntologyAction - Class in org.protege.editor.owl.ui.action
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 21-May-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

CreateEmptyOntologyAction() - Constructor for class org.protege.editor.owl.ui.action.CreateEmptyOntologyAction
 
createEntity() - Method in class org.protege.editor.owl.ui.action.OWLObjectHierarchyCreator
 
createExceptionComponent(String, Throwable, IExtension) - Static method in class org.protege.editor.core.ui.util.ComponentFactory
 
createExplanation(T) - Method in interface org.protege.editor.core.ui.error.ErrorExplainer.ErrorExplanationFactory
 
createFillerSelectorPanel() - Method in class org.protege.editor.owl.ui.editor.AbstractRestrictionCreatorPanel
 
createFillerSelectorPanel() - Method in class org.protege.editor.owl.ui.editor.OWLDataRestrictionCreatorPanel
 
createFillerSelectorPanel() - Method in class org.protege.editor.owl.ui.editor.OWLObjectRestrictionCreatorPanel
 
createFormatComboPanel() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.exportwizard.SelectFormatPage
Creates a panel that contains a combo box with the available export formats in it, and a label, which prompts the user to select a format.
createFrameSectionRow(OWLDataPropertyDomainAxiom, OWLOntology) - Method in class org.protege.editor.owl.ui.frame.OWLDataPropertyDomainFrameSection
 
createFrameSectionRow(OWLObjectPropertyDomainAxiom, OWLOntology) - Method in class org.protege.editor.owl.ui.frame.OWLObjectPropertyDomainFrameSection
 
createFrameSectionRow(A, OWLOntology) - Method in class org.protege.editor.owl.ui.frame.property.AbstractPropertyDomainFrameSection
 
createGraph() - Method in interface uk.ac.man.cs.mig.util.graph.factory.GraphFactory
Creates a Graph
createGraph() - Method in class uk.ac.man.cs.mig.util.graph.factory.impl.DefaultGraphFactory
Creates a Graph
createHierarchy() - Method in class org.protege.editor.owl.model.hierarchy.tabbed.AbstractOWLObjectHierarchyCreator
 
createHierarchy() - Method in class org.protege.editor.owl.model.hierarchy.tabbed.OWLClassHierarchyCreator2
 
createHTMLPane(HyperlinkListener) - Static method in class org.protege.editor.core.ui.util.ComponentFactory
Creates a JEditorPane suitable for showing HTML content
createImage() - Method in class org.protege.editor.owl.ui.transfer.OWLObjectDragGestureListener
 
createInstance(IExtension) - Method in class org.protege.editor.core.editorkit.plugin.EditorKitHookPluginLoader
 
createInstance(IExtension) - Method in class org.protege.editor.core.OntologyRepositoryFactoryPluginLoader
 
createInstance(IExtension) - Method in class org.protege.editor.core.plugin.AbstractPluginLoader
This method needs to be overriden to create an instance of the desired plugin, based on the plugin Extension
createInstance(IExtension) - Method in class org.protege.editor.core.ui.preferences.PreferencesPanelPluginLoader
 
createInstance(IExtension) - Method in class org.protege.editor.core.ui.toolbar.MainToolBarActionPluginLoader
This method needs to be overriden to create an instance of the desired plugin, based on the plugin Extension
createInstance(IExtension) - Method in class org.protege.editor.core.ui.view.ViewComponentPluginLoader
 
createInstance(IExtension) - Method in class org.protege.editor.core.ui.view.ViewToolBarActionPluginLoader
This method needs to be overriden to create an instance of the desired plugin, based on the plugin Extension
createInstance(IExtension) - Method in class org.protege.editor.core.ui.workspace.WorkspaceTabPluginLoader
This method needs to be overriden to create an instance of the desired plugin, based on the plugin Extension
createInstance(IExtension) - Method in class org.protege.editor.owl.model.inference.ProtegeOWLReasonerFactoryPluginLoader
This method needs to be overriden to create an instance of the desired plugin, based on the plugin Extension
createInstance(IExtension) - Method in class org.protege.editor.owl.model.io.IOListenerPluginLoader
 
createInstance(IExtension) - Method in class org.protege.editor.owl.model.library.OntologyLibraryPluginLoader
This method needs to be overriden to create an instance of the desired plugin, based on the plugin Extension
createInstance(IExtension) - Method in class org.protege.editor.owl.ui.editor.OWLDescriptionEditorPluginLoader
 
createInstance(IExtension) - Method in class org.protege.editor.owl.ui.ontology.wizard.move.MoveAxiomsKitPluginLoader
 
createInstance(IExtension) - Method in class org.protege.editor.owl.ui.renderer.OWLEntityColorProviderPluginLoader
 
CreateInstanceOfSelectedClassAction - Class in org.protege.editor.owl.ui.action
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 03-Feb-2007

CreateInstanceOfSelectedClassAction() - Constructor for class org.protege.editor.owl.ui.action.CreateInstanceOfSelectedClassAction
 
CreateInstanceOfThingAction - Class in org.protege.editor.owl.ui.action
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 03-Feb-2007

CreateInstanceOfThingAction() - Constructor for class org.protege.editor.owl.ui.action.CreateInstanceOfThingAction
 
createJarFile(File) - Method in class org.protege.editor.core.util.BundleBuilder
 
createLibrary(OntologyLibraryMemento) - Method in class org.protege.editor.owl.model.library.folder.FolderOntologyLibraryFactory
 
createLibrary(OntologyLibraryMemento) - Method in interface org.protege.editor.owl.model.library.OntologyLibraryFactory
Creates an ontology library from the suitable memento.
createListItemBorder(JList, Object, int, boolean, boolean) - Method in class org.protege.editor.core.ui.list.MList
 
createListItemBorder(JList, Object, int, boolean, boolean) - Method in class org.protege.editor.owl.ui.framelist.OWLFrameList2
 
createNewChild() - Method in class org.protege.editor.owl.ui.clshierarchy.ToldOWLClassHierarchyViewComponent
 
createNewChild() - Method in interface org.protege.editor.owl.ui.view.CreateNewChildTarget
 
CreateNewChildAction - Class in org.protege.editor.owl.ui.action
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 09-May-2007

Create a new object and makes it the child of the selected object

CreateNewChildAction() - Constructor for class org.protege.editor.owl.ui.action.CreateNewChildAction
 
CreateNewChildTarget - Interface in org.protege.editor.owl.ui.view
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 09-May-2007

createNewEntity() - Method in class org.protege.editor.owl.ui.action.OWLObjectHierarchyCreator
 
CreateNewEquivalentClassAction<C extends org.semanticweb.owl.model.OWLObject> - Class in org.protege.editor.owl.ui.framelist
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Nov 24, 2008

CreateNewEquivalentClassAction() - Constructor for class org.protege.editor.owl.ui.framelist.CreateNewEquivalentClassAction
 
createNewMapping(String) - Method in class org.protege.editor.owl.ui.prefix.PrefixMapperTableModel
 
createNewObject() - Method in class org.protege.editor.owl.ui.clshierarchy.ToldOWLClassHierarchyViewComponent
 
createNewObject() - Method in class org.protege.editor.owl.ui.OWLIndividualListComponent
 
createNewObject() - Method in interface org.protege.editor.owl.ui.view.CreateNewTarget
 
createNewObject() - Method in class org.protege.editor.owl.ui.view.OWLIndividualListViewComponent
 
CreateNewObjectAction - Class in org.protege.editor.owl.ui.action
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 09-May-2007

CreateNewObjectAction() - Constructor for class org.protege.editor.owl.ui.action.CreateNewObjectAction
 
createNewOntology(URI, URI) - Method in interface org.protege.editor.owl.model.OWLModelManager
Creates a new, empty ontology that has the specified ontology URI.
createNewOntology(URI, URI) - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
 
CreateNewOntologyPanel - Class in org.protege.editor.owl.ui.ontology.wizard.move
Author: Matthew Horridge
The University Of Manchester
Information Management Group
Date: 23-Sep-2008

CreateNewOntologyPanel(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.ontology.wizard.move.CreateNewOntologyPanel
 
createNewSibling() - Method in class org.protege.editor.owl.ui.clshierarchy.ToldOWLClassHierarchyViewComponent
 
createNewSibling() - Method in interface org.protege.editor.owl.ui.view.CreateNewSiblingTarget
 
CreateNewSiblingAction - Class in org.protege.editor.owl.ui.action
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 09-May-2007

CreateNewSiblingAction() - Constructor for class org.protege.editor.owl.ui.action.CreateNewSiblingAction
 
CreateNewSiblingTarget - Interface in org.protege.editor.owl.ui.view
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 09-May-2007

CreateNewTarget - Interface in org.protege.editor.owl.ui.view
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 09-May-2007

createNode(Object) - Method in class uk.ac.man.cs.mig.util.graph.factory.impl.DefaultNodeFactory
Creates a node
createNode(Object) - Method in interface uk.ac.man.cs.mig.util.graph.factory.NodeFactory
Creates a node
createObject() - Method in class org.protege.editor.owl.ui.clsdescriptioneditor.ExpressionEditor
 
createObject(String) - Method in class org.protege.editor.owl.ui.clsdescriptioneditor.OWLClassAxiomChecker
 
createObject(String) - Method in class org.protege.editor.owl.ui.clsdescriptioneditor.OWLDataRangeChecker
 
createObject(String) - Method in class org.protege.editor.owl.ui.clsdescriptioneditor.OWLDescriptionChecker
 
createObject(String) - Method in interface org.protege.editor.owl.ui.clsdescriptioneditor.OWLExpressionChecker
 
createObject(String) - Method in class org.protege.editor.owl.ui.clsdescriptioneditor.OWLPropertyChainChecker
 
createObject(String) - Method in class org.protege.editor.owl.ui.clsdescriptioneditor.SWRLRuleChecker
 
CreateObjectPropertyAction - Class in org.protege.editor.owl.ui.action
Deprecated. now use CreateNewChildAction
CreateObjectPropertyAction() - Constructor for class org.protege.editor.owl.ui.action.CreateObjectPropertyAction
Deprecated.  
CreateOntologyWizard - Class in org.protege.editor.owl.ui.ontology.wizard.create
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 12-May-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

CreateOntologyWizard(Frame, OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.ontology.wizard.create.CreateOntologyWizard
 
createOutputStream(String) - Method in class uk.ac.man.cs.mig.coode.owlviz.command.ExportCommand
Creates an export stream given a file path name.
createOWLCellRenderer() - Method in class org.protege.editor.owl.model.OWLWorkspace
 
createOWLCellRenderer(boolean, boolean) - Method in class org.protege.editor.owl.model.OWLWorkspace
 
createOWLCellRenderer(boolean, boolean, int) - Method in class org.protege.editor.owl.model.OWLWorkspace
Deprecated. use createOWLCellRenderer(boolean renderExpression, boolean renderIcon)
createOWLClass(String, URI) - Method in class org.protege.editor.owl.model.entity.CustomOWLEntityFactory
 
createOWLClass(String, URI) - Method in interface org.protege.editor.owl.model.entity.OWLEntityFactory
 
createOWLClass() - Method in class org.protege.editor.owl.model.OWLWorkspace
 
createOWLDataProperty(String, URI) - Method in class org.protege.editor.owl.model.entity.CustomOWLEntityFactory
 
createOWLDataProperty(String, URI) - Method in interface org.protege.editor.owl.model.entity.OWLEntityFactory
 
createOWLDataProperty() - Method in class org.protege.editor.owl.model.OWLWorkspace
 
createOWLEntity(Class<T>, String, URI) - Method in class org.protege.editor.owl.model.entity.CustomOWLEntityFactory
 
createOWLEntity(Class<T>, String, URI) - Method in interface org.protege.editor.owl.model.entity.OWLEntityFactory
 
createOWLIndividual(String, URI) - Method in class org.protege.editor.owl.model.entity.CustomOWLEntityFactory
 
createOWLIndividual(String, URI) - Method in interface org.protege.editor.owl.model.entity.OWLEntityFactory
 
createOWLIndividual() - Method in class org.protege.editor.owl.model.OWLWorkspace
 
createOWLObjectProperty(String, URI) - Method in class org.protege.editor.owl.model.entity.CustomOWLEntityFactory
 
createOWLObjectProperty(String, URI) - Method in interface org.protege.editor.owl.model.entity.OWLEntityFactory
 
createOWLObjectProperty() - Method in class org.protege.editor.owl.model.OWLWorkspace
 
createOWLVizTabUI() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizView
 
createPaddingBorder(JList, Object, int, boolean, boolean) - Method in class org.protege.editor.core.ui.list.MList
 
createPaddingBorder(JList, Object, int, boolean, boolean) - Method in class org.protege.editor.owl.ui.list.OWLAxiomList
 
createPlugin(String, TabbedWorkspace) - Method in class org.protege.editor.core.ui.workspace.CustomWorkspaceTabsManager
 
createPlugin(String, TabbedWorkspace) - Method in class org.protege.editor.owl.model.OWLCustomWorkspaceTabsManager
 
createPopupMenu() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizGraphPanel
 
createPropertySelectorPanel() - Method in class org.protege.editor.owl.ui.editor.AbstractRestrictionCreatorPanel
 
createPropertySelectorPanel() - Method in class org.protege.editor.owl.ui.editor.OWLDataRestrictionCreatorPanel
 
createPropertySelectorPanel() - Method in class org.protege.editor.owl.ui.editor.OWLObjectRestrictionCreatorPanel
 
createReasoner(OWLOntologyManager) - Method in class org.protege.editor.owl.model.inference.NoOpReasonerFactory
 
createReasoner(OWLOntologyManager) - Method in interface org.protege.editor.owl.model.inference.OWLReasonerManager
 
createReasoner(OWLOntologyManager) - Method in class org.protege.editor.owl.model.inference.OWLReasonerManagerImpl
 
createReasoner(OWLOntologyManager) - Method in interface org.protege.editor.owl.model.inference.ProtegeOWLReasonerFactory
Creates an instance of an OWLReasoner.
createReasoner(OWLOntologyManager) - Method in class org.protege.editor.owl.model.inference.ToldReasonerFactory
 
createReasoner(OWLOntologyManager) - Method in class uk.ac.manchester.cs.factplusplus.protege.FaCTPlusPlusReasonerFactory
 
createRepository() - Method in class org.protege.editor.core.OntologyRepositoryFactory
Creates the repository.
createRepository() - Method in class org.protege.editor.owl.model.repository.TONESRepositoryFactory
 
createRestriction(P, F, int) - Method in class org.protege.editor.owl.ui.editor.AbstractRestrictionCreatorPanel.CardinalityRestrictionCreator
 
createRestrictions(Set<P>, Set<F>, Set<OWLDescription>) - Method in class org.protege.editor.owl.ui.editor.AbstractRestrictionCreatorPanel.CardinalityRestrictionCreator
 
createRestrictions() - Method in class org.protege.editor.owl.ui.editor.AbstractRestrictionCreatorPanel
Deprecated. use getDescriptions()
createScalingOptionPanel() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.exportwizard.SelectFormatPage
Creates a panel that allows scaling options to be set for the export format.
createScrollPane(JComponent) - Static method in class org.protege.editor.core.ui.util.ComponentFactory
 
createSibling(Set<E>, E) - Method in class org.protege.editor.owl.ui.action.OWLObjectHierarchyCreator
 
CreateSubClassAction - Class in org.protege.editor.owl.ui.action
Deprecated. now use CreateNewChildAction
CreateSubClassAction() - Constructor for class org.protege.editor.owl.ui.action.CreateSubClassAction
Deprecated.  
CreateSubDataPropertyAction - Class in org.protege.editor.owl.ui.action
Deprecated. now use CreateNewChildAction
CreateSubDataPropertyAction() - Constructor for class org.protege.editor.owl.ui.action.CreateSubDataPropertyAction
Deprecated.  
CreateSubObjectPropertyAction - Class in org.protege.editor.owl.ui.action
Deprecated. now use CreateNewChildAction
CreateSubObjectPropertyAction() - Constructor for class org.protege.editor.owl.ui.action.CreateSubObjectPropertyAction
Deprecated.  
createTempFile(File) - Static method in class org.protege.editor.core.FileUtils
 
createTextField() - Static method in class org.protege.editor.core.ui.util.ComponentFactory
 
createTitledBorder(String) - Static method in class org.protege.editor.core.ui.util.ComponentFactory
 
createToolBar(Controller, Controller) - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizView
 
createToolTip() - Method in class uk.ac.man.cs.mig.util.graph.ui.impl.DefaultGraphView
Returns the instance of JToolTip that should be used to display the tooltip.
createTreeNode(N) - Method in class org.protege.editor.owl.ui.tree.OWLObjectTree
 
createTypes() - Method in class org.protege.editor.owl.ui.editor.AbstractRestrictionCreatorPanel
 
createTypes() - Method in class org.protege.editor.owl.ui.editor.OWLDataRestrictionCreatorPanel
 
createTypes() - Method in class org.protege.editor.owl.ui.editor.OWLObjectRestrictionCreatorPanel
 
createUI() - Method in class org.protege.editor.core.ui.view.View
 
createUI() - Method in class org.protege.editor.core.ui.wizard.AbstractWizardPanel
 
createUI(JComponent) - Method in class org.protege.editor.core.ui.wizard.AbstractWizardPanel
 
createUI(JComponent) - Method in class org.protege.editor.owl.ui.action.ExportInferredOntologyIncludeAssertedAxiomsPanel
 
createUI(JComponent) - Method in class org.protege.editor.owl.ui.action.ExportInferredOntologyURIPanel
 
createUI(JComponent) - Method in class org.protege.editor.owl.ui.action.ExportInferredOntologyWizardSelectAxiomsPanel
 
createUI(JComponent) - Method in class org.protege.editor.owl.ui.hierarchy.creation.MakeSiblingClassesDisjointPanel
 
createUI(JComponent) - Method in class org.protege.editor.owl.ui.hierarchy.creation.PickRootClassPanel
 
createUI(JComponent) - Method in class org.protege.editor.owl.ui.hierarchy.creation.TabIndentedHierarchyPanel
 
createUI(JComponent) - Method in class org.protege.editor.owl.ui.ontology.imports.missing.CopyOptionPanel
 
createUI(JComponent) - Method in class org.protege.editor.owl.ui.ontology.imports.missing.ResolutionTypePanel
 
createUI(JComponent) - Method in class org.protege.editor.owl.ui.ontology.imports.missing.SpecifyFilePathPanel
 
createUI(JComponent) - Method in class org.protege.editor.owl.ui.ontology.imports.wizard.ImportConfirmationPage
 
createUI(JComponent) - Method in class org.protege.editor.owl.ui.ontology.imports.wizard.ImportTypePage
 
createUI(JComponent) - Method in class org.protege.editor.owl.ui.ontology.imports.wizard.ImportVerificationPage
 
createUI(JComponent) - Method in class org.protege.editor.owl.ui.ontology.imports.wizard.LibraryPage
 
createUI(JComponent) - Method in class org.protege.editor.owl.ui.ontology.imports.wizard.LoadedOntologyPage
 
createUI(JComponent) - Method in class org.protege.editor.owl.ui.ontology.imports.wizard.LocalFilePage
 
createUI(JComponent) - Method in class org.protege.editor.owl.ui.ontology.imports.wizard.URLPage
 
createUI(JComponent) - Method in class org.protege.editor.owl.ui.ontology.migration.MigrationStartPanel
Deprecated.  
createUI(JComponent) - Method in class org.protege.editor.owl.ui.ontology.wizard.AbstractSelectOntologiesPage
 
createUI(JComponent) - Method in class org.protege.editor.owl.ui.ontology.wizard.create.OntologyURIPanel
 
createUI(JComponent) - Method in class org.protege.editor.owl.ui.ontology.wizard.create.PhysicalLocationPanel
 
createUI(JComponent) - Method in class org.protege.editor.owl.ui.ontology.wizard.merge.MergeTypePage
 
createUI(JComponent) - Method in class org.protege.editor.owl.ui.ontology.wizard.merge.SelectOntologiesPage
 
createUI(JComponent) - Method in class org.protege.editor.owl.ui.ontology.wizard.merge.SelectTargetOntologyPage
 
createUI(JComponent) - Method in class org.protege.editor.owl.ui.ontology.wizard.move.MoveAxiomsWizardKitConfigurationPanel
 
createUI(JComponent) - Method in class org.protege.editor.owl.ui.ontology.wizard.move.SelectActionPanel
 
createUI(JComponent) - Method in class org.protege.editor.owl.ui.ontology.wizard.move.SelectKitPanel
 
createUI(JComponent) - Method in class org.protege.editor.owl.ui.ontology.wizard.move.SelectTargetOntologyTypePanel
 
createUI() - Method in class org.protege.editor.owl.ui.selector.AbstractSelectorPanel
 
createUI() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.exportwizard.SelectFormatPage
Creates the UI for the format page.
createUI() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.exportwizard.SpecifyFileNamePage
 
createUI() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.exportwizard.SpecifyHierarchyPage
 
createUI() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.options.DisplayOptionsPage
 
createUI() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.options.DotProcessPathPage
Deprecated.  
createUI() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.options.LayoutDirectionOptionsPage
 
createUI() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.options.LayoutSpacingOptionsPage
Deprecated.  
createUI() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.options.UIOptionsPage
 
createURI(String, URI) - Method in class org.protege.editor.owl.model.entity.CustomOWLEntityFactory
 
createViewToolBar() - Static method in class org.protege.editor.core.ui.util.ComponentFactory
 
createWorkspaceTab(String) - Method in class org.protege.editor.core.ui.workspace.TabbedWorkspace
 
createWorkspaceTab(String) - Method in class org.protege.editor.owl.model.OWLWorkspace
 
curChar - Variable in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.DotParserTokenManager
 
CURRENT_FILE_DIRECTORY_KEY - Static variable in class org.protege.editor.core.ui.util.UIUtil
 
CURRENT_PANEL_DESCRIPTOR_PROPERTY - Static variable in class org.protege.editor.core.ui.wizard.WizardModel
Identification string for the current panel.
CURRENT_WORKING_DIRECTORY_PROP - Static variable in class org.protege.common.ProtegeProperties
 
currentRenderer - Variable in class org.protege.editor.owl.ui.tree.OWLModelManagerTree
 
currentToken - Variable in exception uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.ParseException
This is the last token that has been consumed successfully.
CustomLabelDescriptor - Class in org.protege.editor.owl.model.entity
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Jul 28, 2008

CustomLabelDescriptor() - Constructor for class org.protege.editor.owl.model.entity.CustomLabelDescriptor
 
CustomOWLEntityFactory - Class in org.protege.editor.owl.model.entity
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Jul 28, 2008

CustomOWLEntityFactory(OWLModelManager) - Constructor for class org.protege.editor.owl.model.entity.CustomOWLEntityFactory
 
CustomWorkspaceTabsManager - Class in org.protege.editor.core.ui.workspace
Author: Matthew Horridge
The University Of Manchester
Information Management Group
Date: 13-Aug-2008

Manages custom tabs.
CustomWorkspaceTabsManager() - Constructor for class org.protege.editor.core.ui.workspace.CustomWorkspaceTabsManager
 
CustomWorkspaceTabsManager.CustomTabPlugin - Class in org.protege.editor.core.ui.workspace
A class that acts as a dynamic plugin
CustomWorkspaceTabsManager.CustomTabPlugin(String, TabbedWorkspace) - Constructor for class org.protege.editor.core.ui.workspace.CustomWorkspaceTabsManager.CustomTabPlugin
 
CutAction - Class in org.protege.editor.owl.ui.action
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 09-May-2007

CutAction() - Constructor for class org.protege.editor.owl.ui.action.CutAction
 
cutObjects() - Method in class org.protege.editor.owl.ui.framelist.OWLFrameList2
 
cutObjects() - Method in interface org.protege.editor.owl.ui.view.Cuttable
 
Cuttable - Interface in org.protege.editor.owl.ui.view
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 09-May-2007

D

DATA_FOLDER_NAME - Static variable in class org.protege.editor.core.FileManager
 
DATA_PROPERTY_COLOR_KEY - Static variable in class org.protege.editor.core.ProtegeProperties
 
DATA_PROPERTY_VIEW_CATEGORY - Static variable in class org.protege.editor.core.ProtegeProperties
 
DataPropertyCountMetric - Class in org.protege.editor.owl.ui.metrics
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 20-Feb-2007

DataPropertyCountMetric() - Constructor for class org.protege.editor.owl.ui.metrics.DataPropertyCountMetric
 
DataPropertyReferencingAxiomStrategy - Class in org.protege.editor.owl.model.selection.axioms
User: nickdrummond Date: May 20, 2008
DataPropertyReferencingAxiomStrategy() - Constructor for class org.protege.editor.owl.model.selection.axioms.DataPropertyReferencingAxiomStrategy
 
DATATYPE_VIEW_CATEGORY - Static variable in class org.protege.editor.core.ProtegeProperties
 
DEBUG - Static variable in class org.protege.editor.core.ui.split.ViewSplitPaneDivider
 
DEBUG - Static variable in class org.protege.editor.core.ui.view.ViewContainer
 
debugStream - Variable in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.DotParserTokenManager
 
DecreaseFontSizeAction - Class in org.protege.editor.core.ui.action
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 21-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

DecreaseFontSizeAction() - Constructor for class org.protege.editor.core.ui.action.DecreaseFontSizeAction
 
decreaseIndent(OWLAxiom) - Method in class org.protege.editor.owl.ui.frame.ExplanationFrameSection
 
decreaseSelectedRowIndent() - Method in class org.protege.editor.owl.ui.framelist.ExplanationFrameList
 
DEFAULT - Static variable in interface uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.DotParserConstants
 
DEFAULT_BASE - Static variable in class org.protege.editor.owl.ui.ontology.OntologyPreferences
 
DEFAULT_DELIMETER - Static variable in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSectionRow
 
DEFAULT_FONT - Static variable in class org.protege.editor.core.ui.util.ProtegePlasticTheme
 
DEFAULT_FONT_NAME - Static variable in class org.protege.editor.owl.ui.renderer.OWLRendererPreferences
 
DEFAULT_FONT_SIZE - Static variable in class org.protege.editor.core.ui.util.ProtegePlasticTheme
 
DEFAULT_FONT_SIZE - Static variable in class org.protege.editor.owl.ui.renderer.OWLRendererPreferences
 
DEFAULT_LINUX_PATH - Static variable in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.DotLayoutEngineProperties
 
DEFAULT_LOCAL_BASE_KEY - Static variable in class org.protege.editor.owl.ui.ontology.wizard.create.PhysicalLocationPanel
 
DEFAULT_MAC_PATH - Static variable in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.DotLayoutEngineProperties
 
DEFAULT_MAX_ENTRIES - Static variable in class org.protege.editor.owl.ui.clsdescriptioneditor.OWLDescriptionAutoCompleter
 
DEFAULT_PAGE - Static variable in class uk.ac.man.cs.mig.coode.owlviz.ui.options.OptionsDialog
 
DEFAULT_PAGE - Static variable in class uk.ac.man.cs.mig.coode.owlviz.ui.options.OWLVizPreferencesPane
 
DEFAULT_PREFIX - Static variable in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSectionRow
 
DEFAULT_RANK_SPACING - Static variable in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.DotLayoutEngineProperties
 
DEFAULT_REASONER_ID - Static variable in class org.protege.editor.owl.model.inference.OWLReasonerManagerImpl
 
DEFAULT_REGISTRY - Static variable in class org.protege.editor.core.update.PluginManager
 
DEFAULT_SUFFIX - Static variable in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSectionRow
 
DEFAULT_WINDOWS_PATH - Static variable in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.DotLayoutEngineProperties
 
DefaultController - Class in uk.ac.man.cs.mig.util.graph.controller.impl
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Jan 15, 2004

matthew.horridge@cs.visualisedObjectManager.ac.uk
www.cs.visualisedObjectManager.ac.uk/~horridgm

DefaultController(GraphModel) - Constructor for class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultController
 
DefaultEdge - Class in uk.ac.man.cs.mig.util.graph.graph.impl
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Jan 14, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

DefaultEdge(Node, Node, Object, int) - Constructor for class uk.ac.man.cs.mig.util.graph.graph.impl.DefaultEdge
 
DefaultEdgeFactory - Class in uk.ac.man.cs.mig.util.graph.factory.impl
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Jan 14, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

DefaultEdgeFactory(Controller) - Constructor for class uk.ac.man.cs.mig.util.graph.factory.impl.DefaultEdgeFactory
Creates an EdgeFactory that produces Egdes based on the model that may be accessed by the specified controller.
DefaultEdgeLabelRenderer - Class in uk.ac.man.cs.mig.util.graph.renderer.impl
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Feb 17, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

DefaultEdgeLabelRenderer() - Constructor for class uk.ac.man.cs.mig.util.graph.renderer.impl.DefaultEdgeLabelRenderer
 
DefaultEdgeRenderer - Class in uk.ac.man.cs.mig.util.graph.renderer.impl
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Jan 14, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

DefaultEdgeRenderer(Controller) - Constructor for class uk.ac.man.cs.mig.util.graph.renderer.impl.DefaultEdgeRenderer
 
DefaultGraph - Class in uk.ac.man.cs.mig.util.graph.graph.impl
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Jan 14, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

DefaultGraph() - Constructor for class uk.ac.man.cs.mig.util.graph.graph.impl.DefaultGraph
 
DefaultGraph.EdgeKey - Class in uk.ac.man.cs.mig.util.graph.graph.impl
 
DefaultGraph.EdgeKey(Edge) - Constructor for class uk.ac.man.cs.mig.util.graph.graph.impl.DefaultGraph.EdgeKey
 
DefaultGraph.EdgeKey(Node, Node) - Constructor for class uk.ac.man.cs.mig.util.graph.graph.impl.DefaultGraph.EdgeKey
 
DefaultGraphFactory - Class in uk.ac.man.cs.mig.util.graph.factory.impl
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Jan 14, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

DefaultGraphFactory() - Constructor for class uk.ac.man.cs.mig.util.graph.factory.impl.DefaultGraphFactory
 
DefaultGraphGenerator - Class in uk.ac.man.cs.mig.util.graph.controller.impl
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Jan 13, 2004

matthew.horridge@cs.visualisedObjectManager.ac.uk
www.cs.visualisedObjectManager.ac.uk/~horridgm

DefaultGraphGenerator(Controller, VisualisedObjectManager, GraphFactory, NodeFactory, EdgeFactory, NodeRenderer) - Constructor for class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultGraphGenerator
 
DefaultGraphLayoutEngine - Class in uk.ac.man.cs.mig.util.graph.layout.impl
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Jan 15, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

DefaultGraphLayoutEngine() - Constructor for class uk.ac.man.cs.mig.util.graph.layout.impl.DefaultGraphLayoutEngine
 
DefaultGraphModel - Class in uk.ac.man.cs.mig.util.graph.model.impl
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Jan 15, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

DefaultGraphModel() - Constructor for class uk.ac.man.cs.mig.util.graph.model.impl.DefaultGraphModel
 
DefaultGraphNode - Class in uk.ac.man.cs.mig.util.graph.model.impl
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Jan 15, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

DefaultGraphNode(Object) - Constructor for class uk.ac.man.cs.mig.util.graph.model.impl.DefaultGraphNode
 
DefaultGraphSelectionModel - Class in uk.ac.man.cs.mig.util.graph.controller.impl
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Jan 12, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

DefaultGraphSelectionModel() - Constructor for class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultGraphSelectionModel
 
DefaultGraphView - Class in uk.ac.man.cs.mig.util.graph.ui.impl
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Jan 14, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

DefaultGraphView(Controller, NodeRenderer, EdgeRenderer) - Constructor for class uk.ac.man.cs.mig.util.graph.ui.impl.DefaultGraphView
 
DefaultNode - Class in uk.ac.man.cs.mig.util.graph.graph.impl
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Jan 14, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

DefaultNode(Object) - Constructor for class uk.ac.man.cs.mig.util.graph.graph.impl.DefaultNode
Constructs a Node that represents the specified object.
DefaultNodeFactory - Class in uk.ac.man.cs.mig.util.graph.factory.impl
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Jan 14, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

DefaultNodeFactory() - Constructor for class uk.ac.man.cs.mig.util.graph.factory.impl.DefaultNodeFactory
 
DefaultNodeLabelRenderer - Class in uk.ac.man.cs.mig.util.graph.renderer.impl
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Jan 16, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

DefaultNodeLabelRenderer() - Constructor for class uk.ac.man.cs.mig.util.graph.renderer.impl.DefaultNodeLabelRenderer
 
DefaultNodeRenderer - Class in uk.ac.man.cs.mig.util.graph.renderer.impl
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Jan 14, 2004

matthew.horridge@cs.visualisedObjectManager.ac.uk
www.cs.visualisedObjectManager.ac.uk/~horridgm

DefaultNodeRenderer(Controller) - Constructor for class uk.ac.man.cs.mig.util.graph.renderer.impl.DefaultNodeRenderer
 
DefaultOntologyURIPanel - Class in org.protege.editor.owl.ui.ontology
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 28-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

DefaultOntologyURIPanel() - Constructor for class org.protege.editor.owl.ui.ontology.DefaultOntologyURIPanel
 
DefaultOWLReasonerExceptionHandler - Class in org.protege.editor.owl.model.inference
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 26-Nov-2007

DefaultOWLReasonerExceptionHandler() - Constructor for class org.protege.editor.owl.model.inference.DefaultOWLReasonerExceptionHandler
 
DefaultPluginActivator - Class in org.protege.editor.core.plugin
 
DefaultPluginActivator() - Constructor for class org.protege.editor.core.plugin.DefaultPluginActivator
 
DefaultPluginExtensionMatcher - Class in org.protege.editor.core.plugin
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Mar 17, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

A default implementation of the PluginExtensionMatcher that just matches all plugin Extensions

DefaultPluginExtensionMatcher() - Constructor for class org.protege.editor.core.plugin.DefaultPluginExtensionMatcher
 
defaultSelected - Static variable in class org.protege.editor.core.ui.util.CheckTable
 
DefaultThumbnailView - Class in uk.ac.man.cs.mig.util.graph.ui.impl
Created by IntelliJ IDEA.
DefaultThumbnailView(ThumbnailViewSource) - Constructor for class uk.ac.man.cs.mig.util.graph.ui.impl.DefaultThumbnailView
 
DefaultVisualisedObjectManager - Class in uk.ac.man.cs.mig.util.graph.controller.impl
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Jan 12, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

DefaultVisualisedObjectManager(GraphModel) - Constructor for class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultVisualisedObjectManager
 
Deleteable - Interface in org.protege.editor.owl.ui.view
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 02-May-2007

DeleteAction - Class in org.protege.editor.owl.ui.action
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 02-May-2007

DeleteAction() - Constructor for class org.protege.editor.owl.ui.action.DeleteAction
 
DeleteClassAction - Class in org.protege.editor.owl.ui.clshierarchy
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 29-May-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

DeleteClassAction(OWLEditorKit, OWLEntitySetProvider<OWLClass>) - Constructor for class org.protege.editor.owl.ui.clshierarchy.DeleteClassAction
 
deleteCustomTab(String) - Method in class org.protege.editor.core.ui.workspace.CustomWorkspaceTabsManager
Deletes a previously added custom tab
DeleteDataPropertyAction - Class in org.protege.editor.owl.ui.view
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 20-Apr-2007

DeleteDataPropertyAction(OWLEditorKit, OWLEntitySetProvider<OWLDataProperty>) - Constructor for class org.protege.editor.owl.ui.view.DeleteDataPropertyAction
 
DeleteEntityAction - Class in org.protege.editor.owl.ui.action
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 22-Feb-2007

DeleteEntityAction() - Constructor for class org.protege.editor.owl.ui.action.DeleteEntityAction
 
DeleteIndividualAction - Class in org.protege.editor.owl.ui.view
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 20-Apr-2007

DeleteIndividualAction(OWLEditorKit, OWLEntitySetProvider<OWLIndividual>) - Constructor for class org.protege.editor.owl.ui.view.DeleteIndividualAction
 
DeleteObjectPropertyAction - Class in org.protege.editor.owl.ui.view
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 20-Apr-2007

DeleteObjectPropertyAction(OWLEditorKit, OWLEntitySetProvider<OWLObjectProperty>) - Constructor for class org.protege.editor.owl.ui.view.DeleteObjectPropertyAction
 
deleteRecursively(File) - Static method in class org.protege.editor.core.FileUtils
 
DIGReasonerPreferencesPanel - Class in org.protege.editor.owl.ui.inference
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 30-Aug-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

DIGReasonerPreferencesPanel() - Constructor for class org.protege.editor.owl.ui.inference.DIGReasonerPreferencesPanel
 
dimensionFromZoomedDimension(Dimension) - Method in class uk.ac.man.cs.mig.util.graph.ui.impl.DefaultGraphView
Converts a Dimension from a 'zoomed' Dimension.
dimensionFromZoomedDimension(Dimension) - Method in interface uk.ac.man.cs.mig.util.graph.ui.Zoomable
Converts a Dimension from a 'zoomed' Dimension.
dimensionToZoomedDimension(Dimension) - Method in class uk.ac.man.cs.mig.util.graph.ui.impl.DefaultGraphView
Converts a Dimension to a 'zoomed' Dimension.
dimensionToZoomedDimension(Dimension) - Method in interface uk.ac.man.cs.mig.util.graph.ui.Zoomable
Converts a Dimension to a 'zoomed' Dimension.
DIRECTION_BACK - Static variable in interface uk.ac.man.cs.mig.util.graph.model.GraphModel
The direction of the relationship is from child to parent
DIRECTION_BOTH - Static variable in interface uk.ac.man.cs.mig.util.graph.model.GraphModel
The relationship is bidirectional - i.e.
DIRECTION_FORWARD - Static variable in interface uk.ac.man.cs.mig.util.graph.model.GraphModel
The direction of the relationship is from parent to child.
DIRECTION_NONE - Static variable in interface uk.ac.man.cs.mig.util.graph.model.GraphModel
The relationship does not have a direction.
disable_tracing() - Method in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.DotParser
 
disableRegisteredActions() - Method in class org.protege.editor.owl.ui.view.AbstractOWLSelectionViewComponent
 
DISJOINT_CLASS_INDICATOR_ICON - Static variable in class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizIcons
 
DISPLAY_ANONYMOUS_CLASSES - Static variable in class uk.ac.man.cs.mig.coode.owlviz.ui.options.OWLVizProperties
Deprecated. The String value of a Boolean that indicated whether anonymous classes should be displayed.
DISPLAY_DISJOINT_INDICATOR - Static variable in class uk.ac.man.cs.mig.coode.owlviz.ui.options.OWLVizProperties
Deprecated. The String value of a Boolean that indicated whether classes that are disjoint to the selected class should be flagged.
DISPLAY_INDIVIDUALS - Static variable in class uk.ac.man.cs.mig.coode.owlviz.ui.options.OWLVizProperties
Deprecated. The String value of a Boolean that indicated whether individuals should be displayed.
DISPLAY_IS_A_LABELS - Static variable in class uk.ac.man.cs.mig.coode.owlviz.ui.options.OWLVizProperties
Deprecated. A String that represents a Boolean value that indicates whether or not is-a labels should be displayed.
displayingPanel() - Method in class org.protege.editor.core.ui.wizard.WizardPanel
Override this method to perform functionality when the panel itself is displayed.
displayingPanel() - Method in class org.protege.editor.owl.ui.hierarchy.creation.MakeSiblingClassesDisjointPanel
 
displayingPanel() - Method in class org.protege.editor.owl.ui.hierarchy.creation.PickRootClassPanel
 
displayingPanel() - Method in class org.protege.editor.owl.ui.hierarchy.creation.TabIndentedHierarchyPanel
 
displayingPanel() - Method in class org.protege.editor.owl.ui.ontology.imports.missing.SpecifyFilePathPanel
 
displayingPanel() - Method in class org.protege.editor.owl.ui.ontology.imports.wizard.ImportConfirmationPage
 
displayingPanel() - Method in class org.protege.editor.owl.ui.ontology.imports.wizard.ImportVerificationPage
 
displayingPanel() - Method in class org.protege.editor.owl.ui.ontology.imports.wizard.LibraryPage
 
displayingPanel() - Method in class org.protege.editor.owl.ui.ontology.imports.wizard.LoadedOntologyPage
 
displayingPanel() - Method in class org.protege.editor.owl.ui.ontology.imports.wizard.LocalFilePage
 
displayingPanel() - Method in class org.protege.editor.owl.ui.ontology.imports.wizard.URLPage
 
displayingPanel() - Method in class org.protege.editor.owl.ui.ontology.wizard.AbstractSelectOntologiesPage
 
displayingPanel() - Method in class org.protege.editor.owl.ui.ontology.wizard.create.OntologyURIPanel
 
displayingPanel() - Method in class org.protege.editor.owl.ui.ontology.wizard.create.PhysicalLocationPanel
 
displayingPanel() - Method in class org.protege.editor.owl.ui.ontology.wizard.merge.MergeTypePage
 
displayingPanel() - Method in class org.protege.editor.owl.ui.ontology.wizard.merge.SelectOntologiesPage
 
displayingPanel() - Method in class org.protege.editor.owl.ui.ontology.wizard.merge.SelectTargetOntologyPage
 
displayingPanel() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.SelectTargetOntologyTypePanel
 
DisplayOptionsPage - Class in uk.ac.man.cs.mig.coode.owlviz.ui.options
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Mar 2, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

DisplayOptionsPage(OWLVizViewOptions) - Constructor for class uk.ac.man.cs.mig.coode.owlviz.ui.options.DisplayOptionsPage
 
displayOWLEntity(OWLEntity) - Method in class org.protege.editor.owl.model.OWLWorkspace
 
displayPopup(Point) - Method in class uk.ac.man.cs.mig.util.graph.ui.impl.DefaultGraphView
Causes the popup to be displayed at the specified point if it lies within a Node boundary.
Disposable - Interface in org.protege.editor.core
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Sep 15, 2008

DisposableAction - Class in org.protege.editor.core.ui.view
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 25-May-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

DisposableAction(String, Icon) - Constructor for class org.protege.editor.core.ui.view.DisposableAction
 
dispose() - Method in class org.protege.editor.core.AbstractModelManager
 
dispose() - Method in class org.protege.editor.core.BookMarkedURIManager
 
dispose() - Method in interface org.protege.editor.core.Disposable
 
dispose() - Method in class org.protege.editor.core.editorkit.AbstractEditorKit
 
dispose() - Method in class org.protege.editor.core.editorkit.RecentEditorKitManager
 
dispose() - Method in class org.protege.editor.core.plugin.PluginUtilities
 
dispose() - Method in class org.protege.editor.core.ProtegeManager
 
dispose() - Method in class org.protege.editor.core.ui.action.AbstractFontSizeAction
 
dispose() - Method in class org.protege.editor.core.ui.action.CheckPluginsAction
 
dispose() - Method in class org.protege.editor.core.ui.action.CloseAction
 
dispose() - Method in class org.protege.editor.core.ui.action.NewAction
 
dispose() - Method in class org.protege.editor.core.ui.action.OpenAction
 
dispose() - Method in class org.protege.editor.core.ui.action.OpenRecentAction
 
dispose() - Method in class org.protege.editor.core.ui.action.SaveAction
 
dispose() - Method in class org.protege.editor.core.ui.action.SaveAsAction
 
dispose() - Method in class org.protege.editor.core.ui.action.TimestampOutputAction
 
dispose() - Method in class org.protege.editor.core.ui.menu.NullMenuAction
This method is called at the end of a plugin life cycle, when the plugin needs to be removed from the system.
dispose() - Method in class org.protege.editor.core.ui.menu.OpenURLMenuAction
 
dispose() - Method in class org.protege.editor.core.ui.preferences.PreferencesDialogPanel
 
dispose() - Method in class org.protege.editor.core.ui.preferences.ShowPreferencesAction
 
dispose() - Method in class org.protege.editor.core.ui.view.DisposableAction
This method should be overriden and used to detatch listeners etc.
dispose() - Method in class org.protege.editor.core.ui.view.View
 
dispose() - Method in class org.protege.editor.core.ui.view.ViewActionAdapter
This method is called at the end of a plugin life cycle, when the plugin needs to be removed from the system.
dispose() - Method in class org.protege.editor.core.ui.view.ViewsPane
 
dispose() - Method in class org.protege.editor.core.ui.wizard.Wizard
 
dispose() - Method in class org.protege.editor.core.ui.workspace.TabbedWorkspace
Disposes of the tabbed workspace.
dispose() - Method in class org.protege.editor.core.ui.workspace.Workspace
 
dispose() - Method in class org.protege.editor.core.ui.workspace.WorkspaceFrame
 
dispose() - Method in class org.protege.editor.core.ui.workspace.WorkspaceViewsTab
 
dispose() - Method in class org.protege.editor.core.update.PluginPreferencesPanel
 
dispose() - Method in class org.protege.editor.owl.model.cache.OWLEntityRenderingCacheImpl
 
dispose() - Method in class org.protege.editor.owl.model.cache.OWLExpressionUserCache
 
dispose() - Method in class org.protege.editor.owl.model.cache.OWLObjectRenderingCache
 
dispose() - Method in class org.protege.editor.owl.model.description.anonymouscls.AnonymousDefinedClassManager
 
dispose() - Method in class org.protege.editor.owl.model.hierarchy.AbstractOWLObjectHierarchyProvider
 
dispose() - Method in class org.protege.editor.owl.model.hierarchy.AbstractOWLOntologyObjectHierarchyProvider
 
dispose() - Method in class org.protege.editor.owl.model.hierarchy.AbstractOWLPropertyHierarchyProvider
 
dispose() - Method in class org.protege.editor.owl.model.hierarchy.AssertedClassHierarchyProvider
Deprecated.  
dispose() - Method in class org.protege.editor.owl.model.hierarchy.AssertedClassHierarchyProvider2
 
dispose() - Method in class org.protege.editor.owl.model.hierarchy.cls.InferredOWLClassHierarchyProvider
 
dispose() - Method in class org.protege.editor.owl.model.hierarchy.IndividualsByInferredTypeHierarchyProvider
 
dispose() - Method in class org.protege.editor.owl.model.hierarchy.IndividualsByTypeHierarchyProvider
 
dispose() - Method in class org.protege.editor.owl.model.hierarchy.OWLHierarchyManagerImpl
 
dispose() - Method in interface org.protege.editor.owl.model.hierarchy.OWLObjectHierarchyProvider
 
dispose() - Method in class org.protege.editor.owl.model.hierarchy.OWLOntologyHierarchyProvider
 
dispose() - Method in class org.protege.editor.owl.model.inference.NoOpReasonerFactory
 
dispose() - Method in class org.protege.editor.owl.model.inference.OWLReasonerManagerImpl
 
dispose() - Method in class org.protege.editor.owl.model.inference.ToldReasonerFactory
 
dispose() - Method in class org.protege.editor.owl.model.io.OntologySourcesManager
 
dispose() - Method in class org.protege.editor.owl.model.library.folder.FolderOntologyLibraryFactory
 
dispose() - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
 
dispose() - Method in class org.protege.editor.owl.model.OWLWorkspace
 
dispose() - Method in class org.protege.editor.owl.model.refactor.ontology.ConvertEntityURIsToIdentifierPattern
 
dispose() - Method in class org.protege.editor.owl.model.refactor.ontology.OntologyImportsWalker
 
dispose() - Method in class org.protege.editor.owl.model.refactor.ontology.OWLEntityURIRegenerator
 
dispose() - Method in class org.protege.editor.owl.model.repository.ManchesterRepository
 
dispose() - Method in class org.protege.editor.owl.model.repository.TONESRepositoryFactory
 
dispose() - Method in interface org.protege.editor.owl.model.selection.OWLSelectionHistoryManager
 
dispose() - Method in class org.protege.editor.owl.model.selection.OWLSelectionHistoryManagerImpl
 
dispose() - Method in class org.protege.editor.owl.ui.action.AbstractDeleteEntityAction
 
dispose() - Method in class org.protege.editor.owl.ui.action.AbstractOntologySelectionStrategyAction
 
dispose() - Method in class org.protege.editor.owl.ui.action.AddCoveringAxiomAction
 
dispose() - Method in class org.protege.editor.owl.ui.action.AmalgamateDisjointClassesAction
 
dispose() - Method in class org.protege.editor.owl.ui.action.AmalgamateSuperClassesAction
 
dispose() - Method in class org.protege.editor.owl.ui.action.ChangeOntologyURI
 
dispose() - Method in class org.protege.editor.owl.ui.action.CloseOntologiesAction
 
dispose() - Method in class org.protege.editor.owl.ui.action.CoerceDataPropertyValuesIntoPropertyRangeAction
 
dispose() - Method in class org.protege.editor.owl.ui.action.ConvertAssertionsOnPunsToAnnotations
 
dispose() - Method in class org.protege.editor.owl.ui.action.ConvertEntityURIsToLabels
 
dispose() - Method in class org.protege.editor.owl.ui.action.ConvertMinOneToSomeValuesFromAction
 
dispose() - Method in class org.protege.editor.owl.ui.action.ConvertToPrimitiveClassAction
 
dispose() - Method in class org.protege.editor.owl.ui.action.CreateClassHierarchyAction
 
dispose() - Method in class org.protege.editor.owl.ui.action.CreateDataPropertyAction
This method is called at the end of a plugin life cycle, when the plugin needs to be removed from the system.
dispose() - Method in class org.protege.editor.owl.ui.action.CreateEmptyOntologyAction
 
dispose() - Method in class org.protege.editor.owl.ui.action.CreateInstanceOfThingAction
This method is called at the end of a plugin life cycle, when the plugin needs to be removed from the system.
dispose() - Method in class org.protege.editor.owl.ui.action.CreateSubClassAction
Deprecated. This method is called at the end of a plugin life cycle, when the plugin needs to be removed from the system.
dispose() - Method in class org.protege.editor.owl.ui.action.ExportInferredOntologyAction
 
dispose() - Method in class org.protege.editor.owl.ui.action.FindAction
 
dispose() - Method in class org.protege.editor.owl.ui.action.FocusedComponentAction
 
dispose() - Method in class org.protege.editor.owl.ui.action.GatherOntologiesAction
 
dispose() - Method in class org.protege.editor.owl.ui.action.LoadIntoCurrentModelAction
 
dispose() - Method in class org.protege.editor.owl.ui.action.MakeAllIndividualsDifferent
 
dispose() - Method in class org.protege.editor.owl.ui.action.MergeOntologiesAction
 
dispose() - Method in class org.protege.editor.owl.ui.action.MoveAxiomsToOntologyAction
 
dispose() - Method in class org.protege.editor.owl.ui.action.OpenFromURIAction
 
dispose() - Method in class org.protege.editor.owl.ui.action.OWLObjectHierarchyDeleter
 
dispose() - Method in class org.protege.editor.owl.ui.action.RedoAction
This method is called at the end of a plugin life cycle, when the plugin needs to be removed from the system.
dispose() - Method in class org.protege.editor.owl.ui.action.RemoveAllDisjointAxiomsAction
 
dispose() - Method in class org.protege.editor.owl.ui.action.RemoveRedundantImportsAction
 
dispose() - Method in class org.protege.editor.owl.ui.action.RenameEntitiesBySearchAndReplaceAction
 
dispose() - Method in class org.protege.editor.owl.ui.action.SelectedOWLClassAction
This method is called at the end of a plugin life cycle, when the plugin needs to be removed from the system.
dispose() - Method in class org.protege.editor.owl.ui.action.SelectedOWLDataPropertyAction
This method is called at the end of a plugin life cycle, when the plugin needs to be removed from the system.
dispose() - Method in class org.protege.editor.owl.ui.action.SelectedOWLEntityAction
 
dispose() - Method in class org.protege.editor.owl.ui.action.SelectedOWLObjectPropertyAction
This method is called at the end of a plugin life cycle, when the plugin needs to be removed from the system.
dispose() - Method in class org.protege.editor.owl.ui.action.SplitDisjointClassesAction
 
dispose() - Method in class org.protege.editor.owl.ui.action.SplitSubClassAxiomsAction
 
dispose() - Method in class org.protege.editor.owl.ui.action.UndoAction
This method is called at the end of a plugin life cycle, when the plugin needs to be removed from the system.
dispose() - Method in class org.protege.editor.owl.ui.axiom.AxiomAnnotationPanel
 
dispose() - Method in class org.protege.editor.owl.ui.clshierarchy.AbstractOWLClassTreeAction
 
dispose() - Method in class org.protege.editor.owl.ui.clshierarchy.AddSiblingClassAction
Deprecated.  
dispose() - Method in class org.protege.editor.owl.ui.clshierarchy.ShowUsageAction
 
dispose() - Method in class org.protege.editor.owl.ui.editor.AbstractRestrictionCreatorPanel
 
dispose() - Method in class org.protege.editor.owl.ui.editor.OWLClassDescriptionEditor
 
dispose() - Method in class org.protege.editor.owl.ui.editor.OWLClassSelectorWrapper
 
dispose() - Method in class org.protege.editor.owl.ui.editor.OWLDescriptionExpressionEditor
 
dispose() - Method in class org.protege.editor.owl.ui.ExplanationPanel
 
dispose() - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrame
 
dispose() - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSection
 
dispose() - Method in class org.protege.editor.owl.ui.frame.editor.OWLDataPropertySetEditor
 
dispose() - Method in class org.protege.editor.owl.ui.frame.editor.OWLObjectPropertySetEditor
 
dispose() - Method in class org.protege.editor.owl.ui.frame.OWLAnnonymousIndividualAnnotationValueEditor
 
dispose() - Method in class org.protege.editor.owl.ui.frame.OWLAnnotationEditor
 
dispose() - Method in interface org.protege.editor.owl.ui.frame.OWLAnnotationValueEditor
 
dispose() - Method in class org.protege.editor.owl.ui.frame.OWLClassDescriptionSetEditor
 
dispose() - Method in class org.protege.editor.owl.ui.frame.OWLConstantEditor
 
dispose() - Method in class org.protege.editor.owl.ui.frame.OWLDataPropertyEditor
 
dispose() - Method in class org.protege.editor.owl.ui.frame.OWLDataPropertyRelationshipEditor
 
dispose() - Method in class org.protege.editor.owl.ui.frame.OWLDataRangeEditor
 
dispose() - Method in class org.protege.editor.owl.ui.frame.OWLEntityFrame
 
dispose() - Method in interface org.protege.editor.owl.ui.frame.OWLFrame
Disposes of the frame by cleaning up any resource and listeners used by the frame
dispose() - Method in interface org.protege.editor.owl.ui.frame.OWLFrameSection
 
dispose() - Method in interface org.protege.editor.owl.ui.frame.OWLFrameSectionRowObjectEditor
 
dispose() - Method in class org.protege.editor.owl.ui.frame.OWLGeneralAxiomEditor
 
dispose() - Method in class org.protege.editor.owl.ui.frame.OWLIndividualAnnotationValueEditor
 
dispose() - Method in class org.protege.editor.owl.ui.frame.OWLIndividualEditor
 
dispose() - Method in class org.protege.editor.owl.ui.frame.OWLIndividualSetEditor
 
dispose() - Method in class org.protege.editor.owl.ui.frame.OWLObjectPropertyChainEditor
 
dispose() - Method in class org.protege.editor.owl.ui.frame.OWLObjectPropertyEditor
 
dispose() - Method in class org.protege.editor.owl.ui.frame.OWLObjectPropertyIndividualPairEditor
 
dispose() - Method in class org.protege.editor.owl.ui.frame.SWRLRuleEditor
 
dispose() - Method in class org.protege.editor.owl.ui.framelist.CreateClosureAxiomAction
 
dispose() - Method in class org.protege.editor.owl.ui.framelist.CreateNewEquivalentClassAction
 
dispose() - Method in interface org.protege.editor.owl.ui.framelist.ExplanationHandler
 
dispose() - Method in class org.protege.editor.owl.ui.framelist.MoveAxiomsToOntologyAction
 
dispose() - Method in class org.protege.editor.owl.ui.framelist.OWLFrameList2
 
dispose() - Method in class org.protege.editor.owl.ui.framelist.OWLFrameListComponent
 
dispose() - Method in class org.protege.editor.owl.ui.framelist.OWLFrameListExplanationHandler
 
dispose() - Method in class org.protege.editor.owl.ui.framelist.OWLFrameListPopupMenuAction
 
dispose() - Method in class org.protege.editor.owl.ui.framelist.PullIntoActiveOntologyAction
 
dispose() - Method in class org.protege.editor.owl.ui.framelist.SwitchToDefiningOntologyAction
 
dispose() - Method in class org.protege.editor.owl.ui.hierarchy.creation.CreateClassHierarchyWizard
 
dispose() - Method in class org.protege.editor.owl.ui.hierarchy.creation.PickRootClassPanel
 
dispose() - Method in class org.protege.editor.owl.ui.inference.ClassifyAction
This method is called at the end of a plugin life cycle, when the plugin needs to be removed from the system.
dispose() - Method in class org.protege.editor.owl.ui.inference.DIGReasonerPreferencesPanel
 
dispose() - Method in class org.protege.editor.owl.ui.inference.SelectedReasonerAction
This method is called at the end of a plugin life cycle, when the plugin needs to be removed from the system.
dispose() - Method in class org.protege.editor.owl.ui.library.OntologyLibraryPanel
 
dispose() - Method in class org.protege.editor.owl.ui.library.ShowOntologyLibrariesAction
 
dispose() - Method in class org.protege.editor.owl.ui.navigation.OWLEntityNavigationMediator
 
dispose() - Method in class org.protege.editor.owl.ui.navigation.OWLEntityNavPanel
 
dispose() - Method in class org.protege.editor.owl.ui.ontology.location.PhysicalLocationTableModel
 
dispose() - Method in class org.protege.editor.owl.ui.ontology.location.ShowOntologyLocationsAction
 
dispose() - Method in class org.protege.editor.owl.ui.ontology.OntologyPreferencesPanel
 
dispose() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.byannotation.AnnotationSelectorPanel
 
dispose() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.byannotation.MoveAnnotationAxiomsByURIKit
 
dispose() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.byprofile.MoveAxiomsByProfileKit
 
dispose() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.byprofile.ProfileSelectorPanel
 
dispose() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.byreference.MoveAxiomsByReferenceKit
 
dispose() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.byreference.SelectSignaturePanel
 
dispose() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.bytype.AxiomTypeSelectorPanel
 
dispose() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.bytype.MoveAxiomsByTypeKit
 
dispose() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.common.SignatureDependentSelectionPreviewPanel
 
dispose() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.MoveAxiomsKitConfigurationPanel
 
dispose() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.MoveAxiomsWizard
 
dispose() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.SelectAxiomsPanel
 
dispose() - Method in class org.protege.editor.owl.ui.OWLAxiomTypeFramePanel
 
dispose() - Method in class org.protege.editor.owl.ui.OWLObjectComparator
 
dispose() - Method in class org.protege.editor.owl.ui.OWLWorkspaceViewsTab
 
dispose() - Method in class org.protege.editor.owl.ui.preferences.AnnotationPreferencesPanel
 
dispose() - Method in class org.protege.editor.owl.ui.preferences.GeneralPreferencesPanel
 
dispose() - Method in class org.protege.editor.owl.ui.preferences.NewEntitiesPreferencesPanel
 
dispose() - Method in class org.protege.editor.owl.ui.preferences.SavePreferencesPanel
 
dispose() - Method in class org.protege.editor.owl.ui.prefix.ShowPrefixMappingsAction
 
dispose() - Method in class org.protege.editor.owl.ui.renderer.AbstractOWLEntityRenderer
 
dispose() - Method in class org.protege.editor.owl.ui.renderer.AnnotationRendererPanel
 
dispose() - Method in class org.protege.editor.owl.ui.renderer.LinkedObjectComponentMediator
 
dispose() - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererDLSyntax
 
dispose() - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
dispose() - Method in class org.protege.editor.owl.ui.renderer.RendererPreferencesPanel
 
dispose() - Method in class org.protege.editor.owl.ui.SelectedOWLEntityList
 
dispose() - Method in class org.protege.editor.owl.ui.selector.AbstractSelectorPanel
 
dispose() - Method in class org.protege.editor.owl.ui.selector.OWLClassSelectorPanel
 
dispose() - Method in class org.protege.editor.owl.ui.selector.OWLDataPropertySelectorPanel
 
dispose() - Method in class org.protege.editor.owl.ui.selector.OWLDataTypeSelectorPanel
 
dispose() - Method in class org.protege.editor.owl.ui.selector.OWLEntitySelectorPanel
 
dispose() - Method in class org.protege.editor.owl.ui.selector.OWLIndividualSelectorPanel
 
dispose() - Method in class org.protege.editor.owl.ui.selector.OWLObjectPropertySelectorPanel
 
dispose() - Method in class org.protege.editor.owl.ui.tree.OWLModelManagerTree
 
dispose() - Method in class org.protege.editor.owl.ui.tree.OWLObjectTree
 
dispose() - Method in class org.protege.editor.owl.ui.tree.OWLTreePreferencesPanel
 
dispose() - Method in interface org.protege.editor.owl.ui.util.OWLComponentFactory
 
dispose() - Method in class org.protege.editor.owl.ui.util.OWLComponentFactoryImpl
 
dispose() - Method in class org.protege.editor.owl.ui.view.AbstractOWLViewComponent
 
dispose() - Method in class org.protege.editor.owl.ui.view.ChangeListenerMediator
 
dispose() - Method in class org.protege.editor.owl.ui.view.DeleteIndividualAction
 
dispose() - Method in class uk.ac.man.cs.mig.coode.owlviz.command.ExportCommand
 
dispose() - Method in class uk.ac.man.cs.mig.coode.owlviz.command.HideAllClassesCommand
 
dispose() - Method in class uk.ac.man.cs.mig.coode.owlviz.command.HideClassCommand
 
dispose() - Method in class uk.ac.man.cs.mig.coode.owlviz.command.HideClassesPastRadiusCommand
 
dispose() - Method in class uk.ac.man.cs.mig.coode.owlviz.command.HideSubclassesCommand
 
dispose() - Method in class uk.ac.man.cs.mig.coode.owlviz.command.SetOptionsCommand
 
dispose() - Method in class uk.ac.man.cs.mig.coode.owlviz.command.ShowAllClassesCommand
 
dispose() - Method in class uk.ac.man.cs.mig.coode.owlviz.command.ShowClassCommand
 
dispose() - Method in class uk.ac.man.cs.mig.coode.owlviz.command.ShowSubclassesCommand
 
dispose() - Method in class uk.ac.man.cs.mig.coode.owlviz.command.ShowSuperclassesCommand
 
dispose() - Method in class uk.ac.man.cs.mig.coode.owlviz.command.ZoomInCommand
 
dispose() - Method in class uk.ac.man.cs.mig.coode.owlviz.command.ZoomOutCommand
 
dispose() - Method in class uk.ac.man.cs.mig.coode.owlviz.model.AbstractOWLClassGraphModel
 
dispose() - Method in class uk.ac.man.cs.mig.coode.owlviz.model.OWLOntologyImportsGraphModel
 
dispose() - Method in class uk.ac.man.cs.mig.coode.owlviz.model.OWLVizAxiomGraphModel
 
dispose() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.options.OWLVizPreferencesPane
 
dispose() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizGraphPanel
 
dispose() - Method in interface uk.ac.man.cs.mig.util.graph.model.GraphModel
Disposed of the graph model.
dispose() - Method in class uk.ac.man.cs.mig.util.graph.model.impl.DefaultGraphModel
 
dispose() - Method in class uk.ac.manchester.cs.factplusplus.protege.FaCTPlusPlusReasonerFactory
 
disposeAction() - Method in class org.protege.editor.owl.ui.action.DeleteEntityAction
 
disposeAction() - Method in class org.protege.editor.owl.ui.action.RenameEntityAction
 
disposeAction() - Method in class org.protege.editor.owl.ui.action.SelectedOWLEntityAction
 
disposeAction() - Method in class org.protege.editor.owl.ui.action.ShowUsageAction
 
disposeOfEditorKit(EditorKit) - Method in class org.protege.editor.core.ProtegeManager
Closes an EditorKit.
disposeOfSection() - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSection
 
disposeOntologyView() - Method in class org.protege.editor.owl.ui.metrics.AxiomMetricsViewComponent
 
disposeOntologyView() - Method in class org.protege.editor.owl.ui.view.AbstractActiveOntologyViewComponent
 
disposeOntologyView() - Method in class org.protege.editor.owl.ui.view.AbstractOntologyRenderingViewComponent
 
disposeOntologyView() - Method in class org.protege.editor.owl.ui.view.AnonymousClassesView
 
disposeOntologyView() - Method in class org.protege.editor.owl.ui.view.InferredAxiomsViewComponent
 
disposeOntologyView() - Method in class org.protege.editor.owl.ui.view.OWLGeneralAxiomsViewComponent
 
disposeOntologyView() - Method in class org.protege.editor.owl.ui.view.SWRLRulesViewComponent
 
disposeOWLView() - Method in class org.coode.dlquery.OWLDescriptionEditorViewComponent
 
disposeOWLView() - Method in class org.protege.editor.owl.ui.find.OWLEntityFinderViewComponent
 
disposeOWLView() - Method in class org.protege.editor.owl.ui.metrics.DLMetricsViewComponent
 
disposeOWLView() - Method in class org.protege.editor.owl.ui.ontology.ActiveOntologyView
 
disposeOWLView() - Method in class org.protege.editor.owl.ui.SpeciesValidationReportView
This method is called at the end of a plugin life cycle, when the plugin needs to be removed from the system.
disposeOWLView() - Method in class org.protege.editor.owl.ui.view.AbstractActiveOntologyViewComponent
 
disposeOWLView() - Method in class org.protege.editor.owl.ui.view.AbstractOWLSelectionViewComponent
This method is called at the end of a plugin life cycle, when the plugin needs to be removed from the system.
disposeOWLView() - Method in class org.protege.editor.owl.ui.view.AbstractOWLViewComponent
 
disposeOWLView() - Method in class org.protege.editor.owl.ui.view.ExplanationResultsViewComponent
 
disposeOWLView() - Method in class org.protege.editor.owl.ui.view.ObjectSelectorViewComponent
 
disposeOWLView() - Method in class org.protege.editor.owl.ui.view.OWLAxiomAnnotationsView
 
disposeOWLView() - Method in class org.protege.editor.owl.ui.view.OWLEntityViewComponent
 
disposeOWLView() - Method in class org.protege.editor.owl.ui.view.OWLImportsDeclarationsViewComponent
 
disposeOWLView() - Method in class org.protege.editor.owl.ui.view.OWLOntologyAnnotationViewComponent
 
disposeOWLView() - Method in class org.protege.editor.owl.ui.view.SelectedEntityCardView
 
disposeOWLView() - Method in class org.protege.editor.owl.ui.view.SelectedObjectViewComponent
 
disposeOWLView() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizImportsViewComponent
 
disposePlugins() - Method in class org.protege.editor.core.BundleManager
 
disposeReasoner() - Method in class org.protege.editor.owl.model.inference.NoOpReasoner
 
disposeRenderer() - Method in class org.protege.editor.owl.ui.renderer.AbstractOWLEntityRenderer
 
disposeRenderer() - Method in class org.protege.editor.owl.ui.renderer.OWLEntityAnnotationValueRenderer
 
disposeRenderer() - Method in class org.protege.editor.owl.ui.renderer.OWLEntityQNameRenderer
 
disposeRenderer() - Method in class org.protege.editor.owl.ui.renderer.OWLEntityRendererImpl
 
disposeRenderer() - Method in class org.protege.editor.owl.ui.renderer.PrefixedOWLEntityAnnotationValueRenderer
 
disposeView() - Method in class org.protege.editor.owl.ui.clshierarchy.AbstractOWLClassHierarchyViewComponent
 
disposeView() - Method in class org.protege.editor.owl.ui.clshierarchy.InferredSuperClassHierarchyViewComponent
 
disposeView() - Method in class org.protege.editor.owl.ui.OWLIndividualListComponent
 
disposeView() - Method in class org.protege.editor.owl.ui.view.AbstractOWLPropertyHierarchyViewComponent
 
disposeView() - Method in class org.protege.editor.owl.ui.view.AbstractOWLPropertyViewComponent
 
disposeView() - Method in class org.protege.editor.owl.ui.view.AbstractOWLSelectionViewComponent
 
disposeView() - Method in class org.protege.editor.owl.ui.view.InferredObjectPropertyHierarchyViewComponent
 
disposeView() - Method in class org.protege.editor.owl.ui.view.ManchesterSyntaxFrameView
 
disposeView() - Method in class org.protege.editor.owl.ui.view.OWLClassAnnotationsViewComponent
 
disposeView() - Method in class org.protege.editor.owl.ui.view.OWLClassDescriptionViewComponent
 
disposeView() - Method in class org.protege.editor.owl.ui.view.OWLClassUsageViewComponent
 
disposeView() - Method in class org.protege.editor.owl.ui.view.OWLDataPropertyAnnotationsViewComponent
 
disposeView() - Method in class org.protege.editor.owl.ui.view.OWLDataPropertyCharacteristicsViewComponent
 
disposeView() - Method in class org.protege.editor.owl.ui.view.OWLDataPropertyDescriptionViewComponent
 
disposeView() - Method in class org.protege.editor.owl.ui.view.OWLDataPropertyDomainsAndRangesViewComponent
 
disposeView() - Method in class org.protege.editor.owl.ui.view.OWLDataPropertyUsageViewComponent
 
disposeView() - Method in class org.protege.editor.owl.ui.view.OWLDisjointClassesViewComponent
 
disposeView() - Method in class org.protege.editor.owl.ui.view.OWLEntityUsageViewComponent
 
disposeView() - Method in class org.protege.editor.owl.ui.view.OWLIndividualAnnotationsViewComponent
 
disposeView() - Method in class org.protege.editor.owl.ui.view.OWLIndividualDescriptionViewComponent
 
disposeView() - Method in class org.protege.editor.owl.ui.view.OWLIndividualListViewComponent
 
disposeView() - Method in class org.protege.editor.owl.ui.view.OWLIndividualPropertyAssertionsViewComponent
 
disposeView() - Method in class org.protege.editor.owl.ui.view.OWLIndividualsByClassViewComponent
 
disposeView() - Method in class org.protege.editor.owl.ui.view.OWLIndividualsByInferredTypeViewComponent
 
disposeView() - Method in class org.protege.editor.owl.ui.view.OWLIndividualUsageViewComponent
 
disposeView() - Method in class org.protege.editor.owl.ui.view.OWLMembersListViewComponent
 
disposeView() - Method in class org.protege.editor.owl.ui.view.OWLObjectPropertyAnnotationsViewComponent
 
disposeView() - Method in class org.protege.editor.owl.ui.view.OWLObjectPropertyCharacteristicsViewComponent
 
disposeView() - Method in class org.protege.editor.owl.ui.view.OWLObjectPropertyDescriptionViewComponent
 
disposeView() - Method in class org.protege.editor.owl.ui.view.OWLObjectPropertyDomainsAndRangesViewComponent
 
disposeView() - Method in class org.protege.editor.owl.ui.view.OWLObjectPropertyUsageViewComponent
 
disposeView() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizAxiomView
 
disposeView() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizView
 
DLMetricsViewComponent - Class in org.protege.editor.owl.ui.metrics
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 03-Oct-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

DLMetricsViewComponent() - Constructor for class org.protege.editor.owl.ui.metrics.DLMetricsViewComponent
 
DLNameKeyPanel - Class in org.protege.editor.owl.ui.metrics
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 03-Oct-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

DLNameKeyPanel() - Constructor for class org.protege.editor.owl.ui.metrics.DLNameKeyPanel
 
DLNamePanel - Class in org.protege.editor.owl.ui.metrics
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 29-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

DLNamePanel() - Constructor for class org.protege.editor.owl.ui.metrics.DLNamePanel
 
DLQueryListCellRenderer - Class in org.coode.dlquery
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 27-Feb-2007

DLQueryListCellRenderer(OWLEditorKit) - Constructor for class org.coode.dlquery.DLQueryListCellRenderer
 
DLQueryResultsSection - Class in org.coode.dlquery
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 27-Feb-2007

DLQueryResultsSection(String) - Constructor for class org.coode.dlquery.DLQueryResultsSection
 
DLQueryResultsSectionItem - Class in org.coode.dlquery
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 27-Feb-2007

DLQueryResultsSectionItem(OWLObject) - Constructor for class org.coode.dlquery.DLQueryResultsSectionItem
 
DOC_PROPERTY_NAME - Static variable in class org.protege.editor.core.update.PluginInfoDocument
 
doClose(Workspace) - Method in class org.protege.editor.core.ui.workspace.WorkspaceManager
 
doExport(OutputStream, ExportFormat) - Method in class uk.ac.man.cs.mig.coode.owlviz.command.ExportCommand
Exports the graph in the specified format to the specified export stream.
dofurtherCreateSteps(OWLIndividual) - Method in class org.protege.editor.owl.ui.view.OWLIndividualListViewComponent
 
dofurtherCreateSteps(OWLIndividual) - Method in class org.protege.editor.owl.ui.view.OWLMembersListViewComponent
 
doLayout() - Method in class org.protege.editor.core.ui.util.CheckTable
 
Done() - Method in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.SimpleCharStream
 
DOT_PATH - Static variable in class uk.ac.man.cs.mig.coode.owlviz.ui.options.OWLVizProperties
Deprecated. The path to the DOT application.
DOT_PATH_PROPERTIES_KEY - Static variable in class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizView
 
DotExportFormat - Class in uk.ac.man.cs.mig.coode.owlviz.export
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: May 27, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

DotExportFormat(OWLModelManager) - Constructor for class uk.ac.man.cs.mig.coode.owlviz.export.DotExportFormat
 
DotGraphLayoutEngine - Class in uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Jan 16, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

DotGraphLayoutEngine() - Constructor for class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.DotGraphLayoutEngine
 
DotLayoutEngineProperties - Class in uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Sep 19, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

DotLayoutEngineProperties() - Constructor for class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.DotLayoutEngineProperties
 
DotOutputGraphRenderer - Class in uk.ac.man.cs.mig.util.graph.outputrenderer.impl
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Jan 16, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

DotOutputGraphRenderer(NodeLabelRenderer, EdgeLabelRenderer) - Constructor for class uk.ac.man.cs.mig.util.graph.outputrenderer.impl.DotOutputGraphRenderer
 
DotParameterSetter - Class in uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: May 7, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

The DotParameterSetter sets the various attributes of a Graph and it's Nodes and Edges, using attribute/value String pairs (that come from a dot file).

DotParameterSetter() - Constructor for class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.DotParameterSetter
 
DotParser - Class in uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser
 
DotParser(InputStream) - Constructor for class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.DotParser
 
DotParser(InputStream, String) - Constructor for class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.DotParser
 
DotParser(Reader) - Constructor for class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.DotParser
 
DotParser(DotParserTokenManager) - Constructor for class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.DotParser
 
DotParserConstants - Interface in uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser
 
DotParserTokenManager - Class in uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser
 
DotParserTokenManager(SimpleCharStream) - Constructor for class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.DotParserTokenManager
 
DotParserTokenManager(SimpleCharStream, int) - Constructor for class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.DotParserTokenManager
 
DotPreParser - Class in uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: May 18, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

DotPreParser() - Constructor for class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.DotPreParser
 
DotProcess - Class in uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Jan 16, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

A wrapper for a native dot process.

DotProcess() - Constructor for class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.DotProcess
Contructs a DotProcess, and starts the native dot process.
DotProcessException - Exception in uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Mar 26, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

DotProcessException(String, Throwable) - Constructor for exception uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.DotProcessException
 
DotProcessPathPage - Class in uk.ac.man.cs.mig.coode.owlviz.ui.options
Deprecated.  
DotProcessPathPage() - Constructor for class uk.ac.man.cs.mig.coode.owlviz.ui.options.DotProcessPathPage
Deprecated.  
DotSubGraphOutputRenderer - Class in uk.ac.man.cs.mig.coode.owlviz.ui.renderer
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Apr 2, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

This renderer is similar to the default renderer, except it is specific to OWLClasses.

DotSubGraphOutputRenderer(OWLModelManager, NodeLabelRenderer, EdgeLabelRenderer) - Constructor for class uk.ac.man.cs.mig.coode.owlviz.ui.renderer.DotSubGraphOutputRenderer
 
DotSubGraphOutputRenderer(OWLModelManager) - Constructor for class uk.ac.man.cs.mig.coode.owlviz.ui.renderer.DotSubGraphOutputRenderer
 
DOWNLOAD_PROPERTY_NAME - Static variable in class org.protege.editor.core.update.PluginInfoDocument
 
DownloadsProvider - Interface in org.protege.editor.core.update
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Nov 6, 2008

dragEnter(DropTargetDragEvent) - Method in class org.protege.editor.owl.ui.framelist.OWLFrameList2
 
dragEnter(DropTargetDragEvent) - Method in class org.protege.editor.owl.ui.table.OWLObjectDropTargetListener
 
dragEnter(DropTargetDragEvent) - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizView
 
dragExit(DropTargetEvent) - Method in class org.protege.editor.owl.ui.framelist.OWLFrameList2
 
dragExit(DropTargetEvent) - Method in class org.protege.editor.owl.ui.table.OWLObjectDropTargetListener
 
dragExit(DropTargetEvent) - Method in class org.protege.editor.owl.ui.transfer.OWLObjectTreeDropTargetListener
 
dragExit(DropTargetEvent) - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizView
 
dragGestureRecognized(DragGestureEvent) - Method in class org.protege.editor.owl.ui.transfer.OWLObjectDragGestureListener
 
dragOver(DropTargetDragEvent) - Method in class org.protege.editor.owl.ui.framelist.OWLFrameList2
 
dragOver(DropTargetDragEvent) - Method in class org.protege.editor.owl.ui.table.OWLObjectDropTargetListener
 
dragOver(DropTargetDragEvent) - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizView
 
draw(Graphics2D, boolean, boolean, boolean, boolean) - Method in class uk.ac.man.cs.mig.util.graph.ui.GraphView
Can be called to draw the GraphView onto the specified Graphics context.
draw(Graphics2D, boolean, boolean, boolean, boolean) - Method in class uk.ac.man.cs.mig.util.graph.ui.impl.DefaultGraphView
 
drawArrows(Graphics2D, Shape, Object) - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.renderer.OWLClsNodeRenderer
 
drawArrows(Graphics2D, Shape, Object) - Method in class uk.ac.man.cs.mig.util.graph.renderer.impl.DefaultNodeRenderer
 
drawThumbnail(Graphics2D) - Method in class uk.ac.man.cs.mig.util.graph.ui.GraphComponent
The main view should draw itself on to the graphics context provided, to produce a representation of the main view in the thumbnail view.
drawThumbnail(Graphics2D) - Method in interface uk.ac.man.cs.mig.util.graph.ui.ThumbnailViewSource
The main view should draw itself on to the graphics context provided, to produce a representation of the main view in the thumbnail view.
drop(DropTargetDropEvent) - Method in class org.protege.editor.owl.ui.framelist.OWLFrameList2
 
drop(DropTargetDropEvent) - Method in class org.protege.editor.owl.ui.table.OWLObjectDropTargetListener
 
drop(DropTargetDropEvent) - Method in class org.protege.editor.owl.ui.transfer.OWLObjectTreeDropTargetListener
 
drop(DropTargetDropEvent) - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizView
 
dropActionChanged(DropTargetDragEvent) - Method in class org.protege.editor.owl.ui.framelist.OWLFrameList2
 
dropActionChanged(DropTargetDragEvent) - Method in class org.protege.editor.owl.ui.table.OWLObjectDropTargetListener
 
dropActionChanged(DropTargetDragEvent) - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizView
 
dropObjects(List<OWLObject>) - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSection
 
dropObjects(List<OWLObject>) - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSectionRow
 
dropObjects(List<OWLObject>) - Method in class org.protege.editor.owl.ui.frame.OWLAnnotationFrameSection
 
dropObjects(List<OWLObject>) - Method in class org.protege.editor.owl.ui.frame.OWLClassAssertionAxiomIndividualSection
 
dropObjects(List<OWLObject>) - Method in class org.protege.editor.owl.ui.frame.OWLClassAssertionAxiomTypeFrameSection
 
dropObjects(List<OWLObject>) - Method in class org.protege.editor.owl.ui.frame.OWLDisjointClassesAxiomFrameSection
 
dropObjects(List<OWLObject>) - Method in class org.protege.editor.owl.ui.frame.OWLEquivalentClassesAxiomFrameSection
 
dropObjects(List<OWLObject>) - Method in interface org.protege.editor.owl.ui.frame.OWLFrameObject
 
dropObjects(List<OWLObject>) - Method in class org.protege.editor.owl.ui.frame.OWLObjectPropertyRangeFrameSection
 
dropObjects(List<OWLObject>) - Method in class org.protege.editor.owl.ui.frame.OWLSubClassAxiomFrameSection
 
dropObjects(List<OWLObject>) - Method in class org.protege.editor.owl.ui.frame.property.AbstractPropertyDomainFrameSection
 
dropOWLObjects(List<OWLObject>, Point, int) - Method in interface org.protege.editor.owl.ui.transfer.OWLObjectDropTarget
 
dropOWLObjects(List<OWLObject>, Point, int) - Method in class org.protege.editor.owl.ui.tree.OWLObjectTree
 
dumpWarningForAllListeners(Logger, Level, String) - Method in class org.protege.editor.owl.model.util.ListenerManager
 
dumpWarningForListener(L, Logger, Level, String) - Method in class org.protege.editor.owl.model.util.ListenerManager
 
DuplicateSelectedClassAction - Class in org.protege.editor.owl.ui.action
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 19-Sep-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

DuplicateSelectedClassAction() - Constructor for class org.protege.editor.owl.ui.action.DuplicateSelectedClassAction
 

E

Edge - Class in org.protege.editor.owl.model.hierarchy.tabbed
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 16-Jul-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

Edge(String, String) - Constructor for class org.protege.editor.owl.model.hierarchy.tabbed.Edge
 
Edge - Interface in uk.ac.man.cs.mig.util.graph.graph
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Dec 27, 2003

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

The interface for Edges contained in a Graph.
EDGE_BRIGHTNESS - Static variable in class uk.ac.man.cs.mig.coode.owlviz.ui.options.OWLVizProperties
Deprecated. A String representation of a double valuet that represents the brightness of the edges in the graph.
EDGE_FACTORY_PROPERTY - Static variable in interface uk.ac.man.cs.mig.util.graph.controller.Controller
 
EDGE_LABEL_RENDERER_PROPERTY - Static variable in interface uk.ac.man.cs.mig.util.graph.controller.Controller
 
EDGE_RENDERER_PROPERTY - Static variable in interface uk.ac.man.cs.mig.util.graph.controller.Controller
 
EdgeFactory - Interface in uk.ac.man.cs.mig.util.graph.factory
User: matthewhorridge The Univeristy Of Manchester Medical Informatics Group Date: Dec 27, 2003
matthew.horridge@cs.man.ac.uk www.cs.man.ac.uk/~horridgm
Defines the interface required to create Edges.
EdgeLabelRenderer - Interface in uk.ac.man.cs.mig.util.graph.renderer
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Feb 17, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

EDGEOP - Static variable in interface uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.DotParserConstants
 
EdgeRenderer - Interface in uk.ac.man.cs.mig.util.graph.renderer
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Dec 29, 2003

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

The interface for a renderer that paints edges in the graph.
editFile(String) - Method in class org.protege.editor.core.platform.apple.AbstractAppleApplicationWrapper
 
editFile(String) - Method in class org.protege.editor.core.platform.apple.ProtegeAppleApplication
 
editor - Variable in class org.protege.editor.owl.ui.frame.OWLObjectPropertyChainEditor
 
EDITOR_KIT_FACTORY_ID - Static variable in class org.protege.editor.core.editorkit.EditorKitDescriptor
 
EDITOR_KIT_PARAM_NAME - Static variable in class org.protege.editor.core.plugin.PluginProperties
This is the name of the clsdescriptioneditor kit Id parameter, which is a "standard" parameter.
EditorKit - Interface in org.protege.editor.core.editorkit
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Mar 15, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

The EditorKit provides a connection between some kind of "ontology model" (or knowledgebase) and a UI for that model/knowledgebase.

EditorKitDescriptor - Class in org.protege.editor.core.editorkit
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 25-May-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

EditorKitDescriptor(String, EditorKitFactory) - Constructor for class org.protege.editor.core.editorkit.EditorKitDescriptor
 
EditorKitFactory - Interface in org.protege.editor.core.editorkit
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Mar 16, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

EditorKit factories are responsible for creating clsdescriptioneditor kits.

EditorKitFactoryPlugin - Class in org.protege.editor.core.editorkit
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Mar 18, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

An EditorKitFactoryPlugin encapsulates details of an EditorKitFactory plugin.

EditorKitFactoryPlugin(IExtension) - Constructor for class org.protege.editor.core.editorkit.EditorKitFactoryPlugin
 
EditorKitFactoryPluginLoader - Class in org.protege.editor.core.editorkit
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Mar 18, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

EditorKitFactoryPluginLoader() - Constructor for class org.protege.editor.core.editorkit.EditorKitFactoryPluginLoader
 
EditorKitHook - Class in org.protege.editor.core.editorkit.plugin
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Oct 15, 2008

A plugin that gets initialised when the editor kit has been created.

EditorKitHook() - Constructor for class org.protege.editor.core.editorkit.plugin.EditorKitHook
 
EditorKitHookPlugin - Interface in org.protege.editor.core.editorkit.plugin
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Oct 15, 2008

EditorKitHookPluginImpl - Class in org.protege.editor.core.editorkit.plugin
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Oct 15, 2008

EditorKitHookPluginImpl(IExtension, EditorKit) - Constructor for class org.protege.editor.core.editorkit.plugin.EditorKitHookPluginImpl
 
EditorKitHookPluginLoader - Class in org.protege.editor.core.editorkit.plugin
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Oct 15, 2008

EditorKitHookPluginLoader(EditorKit) - Constructor for class org.protege.editor.core.editorkit.plugin.EditorKitHookPluginLoader
 
EditorKitManager - Class in org.protege.editor.core.editorkit
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Mar 15, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

EditorKitManager() - Constructor for class org.protege.editor.core.editorkit.EditorKitManager
 
editURI(URI) - Method in class org.protege.editor.core.ProtegeApplication
 
EllipticalNode - Class in uk.ac.man.cs.mig.util.graph.graph.impl
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Jan 15, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

EllipticalNode(Object) - Constructor for class uk.ac.man.cs.mig.util.graph.graph.impl.EllipticalNode
Constructs a Node that represents the specified object.
ENABLE_TEMP_DIRECTORIES_KEY - Static variable in class org.protege.editor.core.ui.util.UIUtil
 
enable_tracing() - Method in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.DotParser
 
endColumn - Variable in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.Token
beginLine and beginColumn describe the position of the first character of this token; endLine and endColumn describe the position of the last character of this token.
endLine - Variable in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.Token
beginLine and beginColumn describe the position of the first character of this token; endLine and endColumn describe the position of the last character of this token.
endTask(BackgroundTask) - Method in class org.protege.editor.core.ui.progress.BackgroundTaskLabel
 
endTask(BackgroundTask) - Method in interface org.protege.editor.core.ui.progress.BackgroundTaskListener
 
endTask(BackgroundTask) - Method in class org.protege.editor.core.ui.progress.BackgroundTaskManager
 
ENTITIES_CHANGED - Static variable in class org.protege.editor.owl.model.selection.axioms.EntityReferencingAxiomsStrategy
 
EntityCreationPreferences - Class in org.protege.editor.owl.model.entity
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Jul 24, 2008

EntityCreationPreferences() - Constructor for class org.protege.editor.owl.model.entity.EntityCreationPreferences
 
EntityFindAndReplaceURIRenamer - Class in org.protege.editor.owl.model.refactor
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Jul 3, 2008

Cannot use an OWLEntityRenamer directly because multiple entities may be referenced by the same axiom

EntityFindAndReplaceURIRenamer(OWLOntologyManager, Collection<OWLEntity>, Set<OWLOntology>, String, String) - Constructor for class org.protege.editor.owl.model.refactor.EntityFindAndReplaceURIRenamer
 
EntityFinder - Interface in org.protege.editor.owl.model.find
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 16-May-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

EntityFinderField - Class in org.protege.editor.owl.ui.find
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 16-May-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

EntityFinderField(JComponent, OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.find.EntityFinderField
 
EntityFinderImpl - Class in org.protege.editor.owl.model.find
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 16-May-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

EntityFinderImpl(OWLModelManagerImpl, OWLEntityRenderingCache) - Constructor for class org.protege.editor.owl.model.find.EntityFinderImpl
 
EntityFinderPreferences - Class in org.protege.editor.owl.model.find
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 03-Sep-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

EntityReferencingAxiomsStrategy<O extends org.semanticweb.owl.model.OWLEntity> - Class in org.protege.editor.owl.model.selection.axioms
User: nickdrummond Date: May 21, 2008
EntityReferencingAxiomsStrategy() - Constructor for class org.protege.editor.owl.model.selection.axioms.EntityReferencingAxiomsStrategy
 
ENUM_NAME - Static variable in class uk.ac.man.cs.mig.coode.owlviz.ui.renderer.OWLClsNodeRenderer
 
EOF - Static variable in interface uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.DotParserConstants
 
eol - Variable in exception uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.ParseException
The end of line string for this machine.
equals(Object) - Method in class org.protege.editor.core.editorkit.EditorKitDescriptor
 
equals(Object) - Method in class uk.ac.man.cs.mig.util.graph.graph.impl.DefaultEdge
 
equals(Object) - Method in class uk.ac.man.cs.mig.util.graph.graph.impl.DefaultGraph.EdgeKey
 
equals(Object) - Method in class uk.ac.man.cs.mig.util.graph.graph.impl.DefaultNode
Implementation of equals two Nodes are considered equal if the represent the same object.
EQUALS - Static variable in interface uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.DotParserConstants
 
EquivalenceRelation<X> - Class in org.protege.editor.owl.model.hierarchy.roots
Lightweight implementation of an equivalence relation which is optimized for answering whether two elements are equivalent but not for traversal of an equivalence class.
EquivalenceRelation() - Constructor for class org.protege.editor.owl.model.hierarchy.roots.EquivalenceRelation
 
equivalent(X, X) - Method in class org.protege.editor.owl.model.hierarchy.roots.EquivalenceRelation
 
ERROR_RETURN_CODE - Static variable in class org.protege.editor.core.ui.wizard.Wizard
Indicates that the dialog closed due to an internal error.
ErrorExplainer - Class in org.protege.editor.core.ui.error
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Aug 29, 2008

This class tries to provide a human understandable explanation for a given exception.

ErrorExplainer() - Constructor for class org.protege.editor.core.ui.error.ErrorExplainer
 
ErrorExplainer.ErrorExplanation<O extends Throwable> - Class in org.protege.editor.core.ui.error
 
ErrorExplainer.ErrorExplanation(O, String) - Constructor for class org.protege.editor.core.ui.error.ErrorExplainer.ErrorExplanation
 
ErrorExplainer.ErrorExplanationFactory<O extends Throwable> - Interface in org.protege.editor.core.ui.error
The factory can be implemented in any way the coder wishes.
ErrorExplainer.ParseErrorExplanation<O extends Throwable> - Class in org.protege.editor.core.ui.error
 
ErrorExplainer.ParseErrorExplanation(O, String, int, int) - Constructor for class org.protege.editor.core.ui.error.ErrorExplainer.ParseErrorExplanation
 
ErrorLog - Class in org.protege.editor.core.ui.error
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 28-Feb-2007

ErrorLog() - Constructor for class org.protege.editor.core.ui.error.ErrorLog
 
ErrorLog.ErrorLogEntry - Class in org.protege.editor.core.ui.error
 
ErrorLog.ErrorLogEntry(Throwable) - Constructor for class org.protege.editor.core.ui.error.ErrorLog.ErrorLogEntry
 
errorLogCleared(ErrorLog) - Method in interface org.protege.editor.core.ui.error.ErrorLogListener
 
errorLogged(ErrorLog) - Method in interface org.protege.editor.core.ui.error.ErrorLogListener
 
ErrorLogListener - Interface in org.protege.editor.core.ui.error
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 28-Feb-2007

ErrorLogPanel - Class in org.protege.editor.core.ui.error
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 28-Feb-2007

ErrorLogPanel(ErrorLog, SendErrorReportHandler) - Constructor for class org.protege.editor.core.ui.error.ErrorLogPanel
 
errorMessageComponent - Variable in class org.protege.editor.owl.ui.error.ErrorPanel
 
ErrorNotificationLabel - Class in org.protege.editor.core.ui.error
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 28-Feb-2007

ErrorNotificationLabel(ErrorLog, SendErrorReportHandler) - Constructor for class org.protege.editor.core.ui.error.ErrorNotificationLabel
 
ErrorPanel<O extends Throwable> - Class in org.protege.editor.owl.ui.error
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Dec 11, 2008

ErrorPanel(ErrorExplainer.ErrorExplanation<O>, URI) - Constructor for class org.protege.editor.owl.ui.error.ErrorPanel
 
EventType - Enum in org.protege.editor.owl.model.event
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 05-Jul-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

expandAll() - Method in class org.protege.editor.owl.ui.tree.OWLObjectTree
 
ExpandBuff(boolean) - Method in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.SimpleCharStream
 
expectedTokenSequences - Variable in exception uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.ParseException
Each entry in this array is an array of integers.
ExplainButton - Class in org.protege.editor.owl.ui.framelist
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 01-Mar-2007

ExplainButton(ActionListener) - Constructor for class org.protege.editor.owl.ui.framelist.ExplainButton
 
ExplanationFrame - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 14-Oct-2007

ExplanationFrame(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.frame.ExplanationFrame
 
ExplanationFrameList - Class in org.protege.editor.owl.ui.framelist
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 16-Jan-2008

ExplanationFrameList(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.framelist.ExplanationFrameList
 
ExplanationFrameSection - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 15-Oct-2007

ExplanationFrameSection(OWLEditorKit, int, OWLAxiom, Set<OWLAxiom>, OWLFrame<? extends OWLAxiom>) - Constructor for class org.protege.editor.owl.ui.frame.ExplanationFrameSection
 
ExplanationFrameSectionRow - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 15-Oct-2007

ExplanationFrameSectionRow(OWLEditorKit, OWLFrameSection, OWLOntology, OWLAxiom, OWLAxiom) - Constructor for class org.protege.editor.owl.ui.frame.ExplanationFrameSectionRow
 
ExplanationGeneratorPanel - Class in org.protege.editor.owl.ui.explanation
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 26-Nov-2007

ExplanationGeneratorPanel(OWLAxiom, OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.explanation.ExplanationGeneratorPanel
 
ExplanationHandler - Interface in org.protege.editor.owl.ui.framelist
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 17-Oct-2007

ExplanationPanel - Class in org.protege.editor.owl.ui
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 17-Oct-2007

ExplanationPanel(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.ExplanationPanel
 
ExplanationResultsViewComponent - Class in org.protege.editor.owl.ui.view
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 14-Sep-2007

ExplanationResultsViewComponent() - Constructor for class org.protege.editor.owl.ui.view.ExplanationResultsViewComponent
 
export() - Method in class uk.ac.man.cs.mig.coode.owlviz.command.ExportCommand
Pops up the export Wizard, and gathers data.
export(Controller, OutputStream) - Method in class uk.ac.man.cs.mig.coode.owlviz.export.DotExportFormat
Exports the graphics to the specified file.
export(Controller, OutputStream) - Method in interface uk.ac.man.cs.mig.util.graph.export.ExportFormat
Exports the graphics to the specified file.
export(Controller, OutputStream) - Method in class uk.ac.man.cs.mig.util.graph.export.impl.AbstractRasterFormat
Exports the graphics to the specified file.
export(Controller, OutputStream) - Method in class uk.ac.man.cs.mig.util.graph.export.impl.SVGExportFormat
Exports the graphics to the specified file.
EXPORT_ICON - Static variable in class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizIcons
 
ExportCommand - Class in uk.ac.man.cs.mig.coode.owlviz.command
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Feb 20, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

ExportCommand(OWLVizViewI) - Constructor for class uk.ac.man.cs.mig.coode.owlviz.command.ExportCommand
 
ExportFormat - Interface in uk.ac.man.cs.mig.util.graph.export
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Feb 20, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

ExportFormatManager - Class in uk.ac.man.cs.mig.util.graph.export
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Feb 20, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

A Singleton class that is used to store and manage various export formats.

ExportFormatManager() - Constructor for class uk.ac.man.cs.mig.util.graph.export.ExportFormatManager
 
ExportInferredOntologyAction - Class in org.protege.editor.owl.ui.action
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 09-Aug-2007

ExportInferredOntologyAction() - Constructor for class org.protege.editor.owl.ui.action.ExportInferredOntologyAction
 
ExportInferredOntologyIncludeAssertedAxiomsPanel - Class in org.protege.editor.owl.ui.action
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 15-Aug-2007

ExportInferredOntologyIncludeAssertedAxiomsPanel(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.action.ExportInferredOntologyIncludeAssertedAxiomsPanel
 
ExportInferredOntologyPanel - Class in org.protege.editor.owl.ui.action
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 09-Aug-2007

ExportInferredOntologyPanel() - Constructor for class org.protege.editor.owl.ui.action.ExportInferredOntologyPanel
 
ExportInferredOntologyURIPanel - Class in org.protege.editor.owl.ui.action
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 09-Aug-2007

ExportInferredOntologyURIPanel(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.action.ExportInferredOntologyURIPanel
 
ExportInferredOntologyWizard - Class in org.protege.editor.owl.ui.action
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 09-Aug-2007

ExportInferredOntologyWizard(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.action.ExportInferredOntologyWizard
 
ExportInferredOntologyWizardSelectAxiomsPanel - Class in org.protege.editor.owl.ui.action
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 09-Aug-2007

ExportInferredOntologyWizardSelectAxiomsPanel(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.action.ExportInferredOntologyWizardSelectAxiomsPanel
 
ExpressionEditor<O> - Class in org.protege.editor.owl.ui.clsdescriptioneditor
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: May 4, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

An editor that can be used to edit text containing class expressions.

ExpressionEditor(OWLEditorKit, OWLExpressionChecker<O>) - Constructor for class org.protege.editor.owl.ui.clsdescriptioneditor.ExpressionEditor
 
ExpressionEditorPreferences - Class in org.protege.editor.owl.ui.clsdescriptioneditor
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Nov 21, 2008

ExpressivityIcons - Class in org.protege.editor.owl.ui.metrics
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 29-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

ExpressivityIcons() - Constructor for class org.protege.editor.owl.ui.metrics.ExpressivityIcons
 
EXTENSION_DOCUMENTATION - Static variable in class org.protege.editor.core.plugin.JPFUtil
 
EXTENSION_POINT_ID - Static variable in interface org.protege.editor.core.editorkit.EditorKitFactory
The EditorKitFactory is a type of plugin, and therefore type of extension point to the protege application.
EXTENSION_POINT_ID - Static variable in interface org.protege.editor.core.editorkit.plugin.EditorKitHookPlugin
 
EXTENSION_POINT_ID - Static variable in interface org.protege.editor.core.OntologyRepositoryFactoryPlugin
 
EXTENSION_POINT_ID - Static variable in class org.protege.editor.core.ui.action.ToolBarActionPluginJPFImpl
 
EXTENSION_POINT_ID - Static variable in class org.protege.editor.core.ui.menu.MenuActionPluginJPFImpl
 
EXTENSION_POINT_ID - Static variable in class org.protege.editor.core.ui.view.ViewActionPluginJPFImpl
 
ExtensionInstantiator<E> - Class in org.protege.editor.core.plugin
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Mar 17, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

A utility class that creates instances of a plugin based on its Extension.

ExtensionInstantiator(IExtension) - Constructor for class org.protege.editor.core.plugin.ExtensionInstantiator
Creates a plugin instantiator that will create instances of a plugin identified by the specified extension.
extractOntology() - Method in class org.protege.editor.owl.ui.frame.ExplanationFrameSection
 

F

FaCTPlusPlusReasonerFactory - Class in uk.ac.manchester.cs.factplusplus.protege
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 11-May-2007

FaCTPlusPlusReasonerFactory() - Constructor for class uk.ac.manchester.cs.factplusplus.protege.FaCTPlusPlusReasonerFactory
 
FaCTPlusPlusReasonerWrapper - Class in uk.ac.manchester.cs.factplusplus.protege
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 11-May-2007

No need to add ontology listeners: When ontologies have changed since classification, FaCT++ reports isClassified() = true
FaCTPlusPlusReasonerWrapper(Reasoner) - Constructor for class uk.ac.manchester.cs.factplusplus.protege.FaCTPlusPlusReasonerWrapper
 
FaCTPlusPlusRenderingViewComponent - Class in uk.ac.manchester.cs.factplusplus.protege
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 08-Aug-2007

FaCTPlusPlusRenderingViewComponent() - Constructor for class uk.ac.manchester.cs.factplusplus.protege.FaCTPlusPlusRenderingViewComponent
 
FILE_KEY - Static variable in class org.protege.editor.owl.model.library.folder.FolderOntologyLibrary
 
FILE_MENU_NAME - Static variable in class org.protege.editor.core.ui.workspace.Workspace
 
FILE_PREFERENCES_KEY - Static variable in class org.protege.editor.core.ui.util.UIUtil
 
FILE_ROOT - Static variable in class uk.ac.man.cs.mig.coode.owlviz.ui.options.OWLVizProperties
Deprecated.  
FileManager - Class in org.protege.editor.core
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 13-Sep-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

FileManager() - Constructor for class org.protege.editor.core.FileManager
 
FilePathPanel - Class in org.protege.editor.core.ui.util
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 12-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

FilePathPanel(String, Set<String>) - Constructor for class org.protege.editor.core.ui.util.FilePathPanel
 
FileURIPanel - Class in org.protege.editor.core.ui.util
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 16-May-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

FileURIPanel(Set<String>) - Constructor for class org.protege.editor.core.ui.util.FileURIPanel
 
FileUtils - Class in org.protege.editor.core
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 24-Aug-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

FileUtils() - Constructor for class org.protege.editor.core.FileUtils
 
FillBuff() - Method in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.SimpleCharStream
 
fillers - Variable in class org.protege.editor.owl.model.util.ObjectSomeRestrictionFillerExtractor
 
fillLog() - Method in class org.protege.editor.core.ui.error.ErrorLogPanel
 
fillLog() - Method in class org.protege.editor.core.ui.progress.BackgroundTaskListPanel
 
FilteredAxiomsModel - Interface in org.protege.editor.owl.ui.ontology.wizard.move
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Dec 4, 2008

FilteringOWLSelectionModelListener - Class in org.protege.editor.owl.model.selection
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 08-Feb-2007

FilteringOWLSelectionModelListener(OWLEditorKit) - Constructor for class org.protege.editor.owl.model.selection.FilteringOWLSelectionModelListener
 
find(String) - Method in class org.protege.editor.owl.ui.clshierarchy.AbstractOWLClassHierarchyViewComponent
 
find(String) - Method in class org.protege.editor.owl.ui.OWLIndividualListComponent
 
find(String) - Method in class org.protege.editor.owl.ui.view.AbstractOWLPropertyHierarchyViewComponent
 
find(String) - Method in interface org.protege.editor.owl.ui.view.Findable
 
find(String) - Method in class org.protege.editor.owl.ui.view.OWLIndividualListViewComponent
 
Findable<E extends org.semanticweb.owl.model.OWLEntity> - Interface in org.protege.editor.owl.ui.view
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 11-Sep-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

FindAction - Class in org.protege.editor.owl.ui.action
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 28-Sep-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

FindAction() - Constructor for class org.protege.editor.owl.ui.action.FindAction
 
findTerminalElements(Set<X>) - Method in class org.protege.editor.owl.model.hierarchy.roots.TerminalElementFinder
 
FINISH - Static variable in class org.protege.editor.core.ui.wizard.WizardPanel
Identifier returned by getNextPanelDescriptor() to indicate that this is the last panel and the text of the 'Next' button should change to 'Finish'.
finish() - Method in class org.protege.editor.owl.model.hierarchy.roots.TerminalElementFinder
 
FINISH_RETURN_CODE - Static variable in class org.protege.editor.core.ui.wizard.Wizard
Indicates that the 'Finish' button was pressed to dispose the dialog.
finishedLoadingOntology(OWLOntologyLoaderListener.LoadingFinishedEvent) - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
 
finishPressed(WizardEvent) - Method in interface uk.ac.man.cs.mig.util.wizard.WizardEventListener
 
fireCancelButtonPressedEvent() - Method in class uk.ac.man.cs.mig.util.wizard.Wizard
 
fireChange() - Method in class org.protege.editor.core.ui.util.FilePathPanel
 
fireChange() - Method in class org.protege.editor.core.ui.util.URLPanel
 
fireCheckChanged(Object, int, boolean) - Method in class org.protege.editor.core.ui.util.CheckList
 
fireChildAddedEvent(Object, Object) - Method in class uk.ac.man.cs.mig.util.graph.model.impl.AbstractGraphModel
Propagates a child object added event to registered listeners.
fireChildObjectAddedEvent(Object, Object) - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultVisualisedObjectManager
Propagates a child object added event to listeners
fireChildObjectRemovedEvent(Object, Object) - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultVisualisedObjectManager
Propagates a child object removed event to listeners
fireChildRemovedEvent(Object, Object) - Method in class uk.ac.man.cs.mig.util.graph.model.impl.AbstractGraphModel
Propagates a child object removed event to registered listeners.
fireContentChanged() - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrame
 
fireContentChanged() - Method in interface org.protege.editor.owl.ui.frame.OWLFrame
Called when the frame content (either the sections or the rows within sections) have changed.
fireEvent(EventType) - Method in interface org.protege.editor.owl.model.OWLModelManager
 
fireEvent(EventType) - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
 
fireFinishButtonPressedEvent() - Method in class uk.ac.man.cs.mig.util.wizard.Wizard
 
fireGraphChangedEvent() - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultGraphGenerator
 
fireHierarchyChanged() - Method in class org.protege.editor.owl.model.hierarchy.AbstractOWLObjectHierarchyProvider
 
fireMappingAdded(String, String) - Method in class org.protege.editor.owl.model.namespace.AbstractNamespaceManager
 
fireMappingRemoved(String, String) - Method in class org.protege.editor.owl.model.namespace.AbstractNamespaceManager
 
fireModelChangedEvent() - Method in class uk.ac.man.cs.mig.util.graph.model.impl.AbstractGraphModel
Propagates a model changed event to all registered listeners.
fireModelManagerEvent(ModelManagerEvent) - Method in class org.protege.editor.core.AbstractModelManager
 
fireModelManagerEvent(ModelManagerEvent) - Method in interface org.protege.editor.core.ModelManager
 
fireNextButtonPressedEvent() - Method in class uk.ac.man.cs.mig.util.wizard.Wizard
 
fireNodeChanged(N) - Method in class org.protege.editor.owl.model.hierarchy.AbstractOWLObjectHierarchyProvider
 
fireNodeClickedEvent(Node, MouseEvent) - Method in class uk.ac.man.cs.mig.util.graph.ui.GraphView
Causes a NodeClickedEvent to be fired.
fireNodeSelectionChangedEvent() - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultGraphSelectionModel
Propagates selection events to listeners.
fireObjectAddedEvent(ArrayList) - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultVisualisedObjectManager
Propagates an object added event to all listeners.
fireObjectChangedEvent(ArrayList) - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultVisualisedObjectManager
Propagates an object changed event to all listeners.
fireObjectRemovedEvent(ArrayList) - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultVisualisedObjectManager
Propagates an object removed event to all listeners.
fireObjectsAddedEvent(ArrayList) - Method in class uk.ac.man.cs.mig.util.graph.model.impl.AbstractGraphModel
 
fireObjectsChangedEvent(ArrayList) - Method in class uk.ac.man.cs.mig.util.graph.model.impl.AbstractGraphModel
Propagates an object changed event to registered listeners.
fireObjectsRemovedEvent(ArrayList) - Method in class uk.ac.man.cs.mig.util.graph.model.impl.AbstractGraphModel
Propagates an object removed event to registered listeners.
fireOptionsChangedEvent() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.options.OWLVizViewOptions
 
firePageChangedEvent() - Method in class uk.ac.man.cs.mig.util.wizard.Wizard
 
fireParentAddedEvent(Object, Object) - Method in class uk.ac.man.cs.mig.util.graph.model.impl.AbstractGraphModel
Propagates a parent object added event to registered listeners.
fireParentObjectAddedEvent(Object, Object) - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultVisualisedObjectManager
Propagates a parent object added event to listeners
fireParentObjectRemovedEvent(Object, Object) - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultVisualisedObjectManager
Propagates a parent object removed event to listeners
fireParentRemovedEvent(Object, Object) - Method in class uk.ac.man.cs.mig.util.graph.model.impl.AbstractGraphModel
Propagates a parent object removed event to registered listeners.
firePopupClosedEvent() - Method in class uk.ac.man.cs.mig.util.popup.PopupComponent
Fires an event that informs registered listeners that the popup has closed.
firePrevButtonPressedEvent() - Method in class uk.ac.man.cs.mig.util.wizard.Wizard
 
firePropertyChange(String, Object, Object) - Method in class org.protege.editor.core.ui.wizard.WizardModel
 
firePropertyChangeEvent(String, String, String) - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.options.OWLVizProperties
Deprecated. Causes a PropertyChangeEvent to be sent to all listeners
firePropertyChangeEvent(String, Object, Object) - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultController
Propagates PropertyChangeEvents to any registered listeners.
fireRenderingChanged(OWLEntity) - Method in class org.protege.editor.owl.ui.renderer.AbstractOWLEntityRenderer
 
fireSelectionChanged() - Method in class org.protege.editor.core.ui.util.AbstractSelectionProvider
 
fireStateChanged() - Method in class org.protege.editor.core.ui.util.FileURIPanel
 
fireStateChanged() - Method in class org.protege.editor.owl.model.history.HistoryManagerImpl
 
fireStateChanged() - Method in class org.protege.editor.owl.model.selection.OWLSelectionHistoryManagerImpl
 
fireStateChanged(Object) - Method in class org.protege.editor.owl.ui.view.ChangeListenerMediator
Notifies all listeners of a state change event.
fireThumbnailViewSourceEvent(ThumbnailViewSourceEvent, int) - Method in class uk.ac.man.cs.mig.util.graph.ui.GraphComponent
 
fireVisibilityChanged() - Method in class org.protege.editor.owl.model.OntologyVisibilityManagerImpl
 
firstPage() - Method in class uk.ac.man.cs.mig.util.wizard.Wizard
Programmatically sets the Wizard to display the first page.
FocusedComponentAction<C extends ActionTarget> - Class in org.protege.editor.owl.ui.action
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 02-May-2007

FocusedComponentAction() - Constructor for class org.protege.editor.owl.ui.action.FocusedComponentAction
 
FolderOntologyLibrary - Class in org.protege.editor.owl.model.library.folder
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 23-Aug-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

FolderOntologyLibrary(File) - Constructor for class org.protege.editor.owl.model.library.folder.FolderOntologyLibrary
 
FolderOntologyLibraryFactory - Class in org.protege.editor.owl.model.library.folder
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 23-Aug-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

FolderOntologyLibraryFactory() - Constructor for class org.protege.editor.owl.model.library.folder.FolderOntologyLibraryFactory
 
FONT_NAME - Static variable in class org.protege.editor.owl.ui.renderer.OWLRendererPreferences
 
FONT_SIZE - Static variable in class org.protege.editor.owl.ui.renderer.OWLRendererPreferences
 
forceRepaint() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizView
 
FOREGROUND - Static variable in class org.protege.editor.owl.ui.renderer.OWLCellRenderer
 
frameContentChanged() - Method in interface org.protege.editor.owl.ui.frame.OWLFrameListener
Gets called when the frame content has been changed.

G

GatherOntologiesAction - Class in org.protege.editor.owl.ui.action
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 22-May-2007

GatherOntologiesAction() - Constructor for class org.protege.editor.owl.ui.action.GatherOntologiesAction
 
GatherOntologiesPanel - Class in org.protege.editor.owl.ui
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 21-Mar-2007

GatherOntologiesPanel(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.GatherOntologiesPanel
 
GeneralPreferencesPanel - Class in org.protege.editor.owl.ui.preferences
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 03-Sep-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

GeneralPreferencesPanel() - Constructor for class org.protege.editor.owl.ui.preferences.GeneralPreferencesPanel
 
generateGraph() - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultGraphGenerator
Regenrates the graph
generateNewURI(OWLEntity) - Method in class org.protege.editor.owl.model.refactor.ontology.OWLEntityURIRegenerator
 
generateParseException() - Method in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.DotParser
 
GeneratePrefixFromOntologyAction - Class in org.protege.editor.owl.ui.prefix
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 22-Sep-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

GeneratePrefixFromOntologyAction(OWLEditorKit, PrefixMapperTable) - Constructor for class org.protege.editor.owl.ui.prefix.GeneratePrefixFromOntologyAction
 
generateURI() - Method in class org.protege.editor.owl.ui.ontology.OntologyPreferences
 
get(Object) - Method in class org.protege.editor.core.AbstractModelManager
 
get(Object) - Method in class org.protege.editor.core.editorkit.AbstractEditorKit
 
get(Object) - Method in interface org.protege.editor.core.editorkit.EditorKit
 
get(Object) - Method in interface org.protege.editor.core.ModelManager
 
getAccelerator() - Method in interface org.protege.editor.core.ui.menu.MenuActionPlugin
Gets the accelerator KeyStroke for the menu item defined by this plugin.
getAccelerator() - Method in class org.protege.editor.core.ui.menu.MenuActionPluginJPFImpl
 
getActionListener() - Method in class org.protege.editor.core.ui.list.MListButton
 
getActions() - Method in class org.protege.editor.core.ui.menu.MenuBuilder
 
getActiveFilters() - Method in class org.protege.editor.owl.ui.usage.UsagePreferences
 
getActiveOntologies() - Method in interface org.protege.editor.owl.model.OWLModelManager
Gets the ontologies that are in the imports closure of the the active ontology.
getActiveOntologies() - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
 
getActiveOntologiesStrategies() - Method in interface org.protege.editor.owl.model.OWLModelManager
 
getActiveOntologiesStrategies() - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
 
getActiveOntologiesStrategy() - Method in interface org.protege.editor.owl.model.OWLModelManager
 
getActiveOntologiesStrategy() - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
 
getActiveOntology() - Method in interface org.protege.editor.owl.model.OWLModelManager
Gets the active ontology.
getActiveOntology() - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
 
getADCsForOntology(OWLOntology) - Method in class org.protege.editor.owl.model.description.anonymouscls.ADCFactory
 
getAddedLibraries() - Method in class org.protege.editor.owl.ui.library.OntologyLibraryPanel
 
getAddedParents(N) - Method in class org.protege.editor.owl.model.hierarchy.OWLObjectHierarchyDiffTool
 
getAdditionalButtons() - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSection
 
getAdditionalButtons() - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSectionRow
 
getAdditionalButtons() - Method in class org.protege.editor.owl.ui.frame.ExplanationFrameSection
 
getAdditionalButtons() - Method in class org.protege.editor.owl.ui.frame.ExplanationFrameSectionRow
 
getAdditionalButtons() - Method in class org.protege.editor.owl.ui.frame.OWLImportsDeclarationAxiomFrameSectionRow
 
getAllGraphComponents() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizView
 
getAllGraphComponents() - Method in interface uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizViewI
 
getAllKeyWord() - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererDLSyntax
 
getAllKeyWord() - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
getAllNodes() - Method in class uk.ac.man.cs.mig.coode.owlviz.model.OWLVizAxiomGraphModel
 
getAllowsChildren() - Method in class org.protege.editor.owl.ui.tree.OWLObjectTreeNode
 
getAllValues() - Method in class org.protege.editor.core.ui.util.CheckTable
 
getAllValues() - Method in class org.protege.editor.core.ui.util.CheckTableModel
 
getAncestorClasses(OWLDescription) - Method in class org.protege.editor.owl.model.inference.NoOpReasoner
 
getAncestorProperties(OWLObjectProperty) - Method in class org.protege.editor.owl.model.inference.NoOpReasoner
 
getAncestorProperties(OWLDataProperty) - Method in class org.protege.editor.owl.model.inference.NoOpReasoner
 
getAncestors(N) - Method in class org.protege.editor.owl.model.hierarchy.AbstractOWLObjectHierarchyProvider
 
getAncestors(OWLClass) - Method in class org.protege.editor.owl.model.hierarchy.cls.InferredOWLClassHierarchyProvider
 
getAncestors(N) - Method in interface org.protege.editor.owl.model.hierarchy.OWLObjectHierarchyProvider
 
getAndKeyWord() - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererDLSyntax
 
getAndKeyWord() - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
getAnnotation() - Method in class org.protege.editor.owl.ui.frame.OWLAnnotationEditor
 
getAnnotationLangs(URI) - Method in class org.protege.editor.owl.ui.renderer.OWLRendererPreferences
 
getAnnotationLangs() - Method in class org.protege.editor.owl.ui.renderer.OWLRendererPreferences
 
getAnnotationURI() - Method in class org.protege.editor.owl.model.description.anonymouscls.AnonymousDefinedClassManager
 
getAnnotationURIs() - Method in class org.protege.editor.owl.ui.renderer.OWLRendererPreferences
 
getAnswer(OWLReasoner, OWLDescription) - Method in interface org.coode.dlquery.ReasonerQueryInvoker
 
getAntialiased() - Method in class uk.ac.man.cs.mig.coode.owlviz.export.DotExportFormat
If the export supports antialiasing, this method ,ay be used to determine whether antialiasing will be applied.
getAntialiased() - Method in interface uk.ac.man.cs.mig.util.graph.export.ExportFormat
If the export supports antialiasing, this method ,ay be used to determine whether antialiasing will be applied.
getAntialiased() - Method in class uk.ac.man.cs.mig.util.graph.export.impl.AbstractRasterFormat
If the export supports antialiasing, this method ,ay be used to determine whether antialiasing will be applied.
getAntialiased() - Method in class uk.ac.man.cs.mig.util.graph.export.impl.AbstractVectorFormat
If the export supports antialiasing, this method ,ay be used to determine whether antialiasing will be applied.
getApplication() - Method in class org.protege.editor.core.ProtegeManager
 
getApplicationBundle() - Method in class org.protege.editor.core.plugin.PluginUtilities
 
getApplicationContext() - Method in class org.protege.editor.core.plugin.PluginUtilities
 
getApplicationDirectory() - Static method in class org.protege.common.ProtegeProperties
 
getApplicationPreferences(Class) - Method in class org.protege.editor.core.prefs.JavaBackedPreferencesManagerImpl
 
getApplicationPreferences(String) - Method in class org.protege.editor.core.prefs.JavaBackedPreferencesManagerImpl
 
getApplicationPreferences(String) - Method in class org.protege.editor.core.prefs.PreferencesManager
Gets hold of the application preferences.
getApplicationPreferences(Class) - Method in class org.protege.editor.core.prefs.PreferencesManager
A convenience method that gets some application preferences with an id that is generated from a class name.
getArguments(BundleContext) - Static method in class org.protege.editor.core.platform.PlatformArguments
 
getAssertedGraphComponent() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizView
 
getAssertionOntology() - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSection
Override this if the axiom should be asserted into an ontology other than the active one.
getAssertionOntology() - Method in class org.protege.editor.owl.ui.frame.OWLAxiomAnnotationsFrameSection
 
getAttribute(IExtension, String) - Static method in class org.protege.editor.core.plugin.PluginUtilities
 
getAttributes(IExtension) - Static method in class org.protege.editor.core.plugin.PluginUtilities
 
getAuthor() - Method in class org.protege.editor.core.update.PluginInfo
 
getAutoExpansionChildLimit() - Method in class org.protege.editor.owl.ui.tree.OWLTreePreferences
Gets the maximum child count that would allow a branch to be automatically expanded.
getAutoExpansionDepthLimit() - Method in class org.protege.editor.owl.ui.tree.OWLTreePreferences
 
getAutoIDDigitCount() - Static method in class org.protege.editor.owl.model.entity.EntityCreationPreferences
 
getAutoIDEnd() - Static method in class org.protege.editor.owl.model.entity.EntityCreationPreferences
 
getAutoIDGeneratorClass() - Static method in class org.protege.editor.owl.model.entity.EntityCreationPreferences
 
getAutoIDStart() - Static method in class org.protege.editor.owl.model.entity.EntityCreationPreferences
 
getAvailableDownloads() - Method in interface org.protege.editor.core.update.DownloadsProvider
 
getAvailableDownloads() - Method in class org.protege.editor.core.update.RemotePluginRegistry
 
getAvailableDownloads() - Method in class org.protege.editor.core.update.UpdatesProvider
 
getAvailableVersion() - Method in class org.protege.editor.core.update.PluginInfo
 
getAxiom() - Method in class org.protege.editor.owl.model.util.OWLAxiomInstance
 
getAxiom() - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSectionRow
Gets the object that the row holds.
getAxiom() - Method in interface org.protege.editor.owl.ui.frame.OWLFrameSectionRow
Gets the axiom that the row holds.
getAxiom() - Method in class org.protege.editor.owl.ui.usage.UsageByEntityTreeModel.UsageTreeNode
 
getAxiom(OWLDataFactory, OWLDataProperty, OWLDataProperty) - Method in class org.protege.editor.owl.ui.view.OWLDataPropertyTreeDropHandler
 
getAxiom(OWLDataFactory, OWLObjectProperty, OWLObjectProperty) - Method in class org.protege.editor.owl.ui.view.OWLObjectPropertyTreeDropHandler
 
getAxiom(OWLDataFactory, N, N) - Method in class org.protege.editor.owl.ui.view.OWLPropertyTreeDropHandler
 
getAxioms(Set<OWLOntology>) - Method in class org.protege.editor.owl.model.selection.axioms.AllAxiomsStrategy
 
getAxioms(Set<OWLOntology>) - Method in class org.protege.editor.owl.model.selection.axioms.AnnotationAxiomsStrategy
 
getAxioms(Set<OWLOntology>) - Method in interface org.protege.editor.owl.model.selection.axioms.AxiomSelectionStrategy
 
getAxioms(Set<OWLOntology>) - Method in class org.protege.editor.owl.model.selection.axioms.AxiomTypeStrategy
 
getAxioms(Set<OWLOntology>) - Method in class org.protege.editor.owl.model.selection.axioms.ClassReferencingAxiomsStrategy
 
getAxioms(Set<OWLOntology>) - Method in class org.protege.editor.owl.model.selection.axioms.DataPropertyReferencingAxiomStrategy
 
getAxioms(Set<OWLOntology>) - Method in class org.protege.editor.owl.model.selection.axioms.IndividualReferencingAxiomStrategy
 
getAxioms(Set<OWLOntology>) - Method in class org.protege.editor.owl.model.selection.axioms.ObjectPropertyReferencingAxiomStrategy
 
getAxioms() - Method in class org.protege.editor.owl.ui.frame.ExplanationFrameSection
 
getAxioms() - Method in class org.protege.editor.owl.ui.frame.OWLAxiomAnnotationsRoot
 
getAxioms(OWLOntology) - Method in class org.protege.editor.owl.ui.frame.OWLDataPropertyDomainFrameSection
 
getAxioms(OWLOntology) - Method in class org.protege.editor.owl.ui.frame.OWLObjectPropertyDomainFrameSection
 
getAxioms(OWLOntology) - Method in class org.protege.editor.owl.ui.frame.property.AbstractPropertyDomainFrameSection
 
getAxioms(Set<OWLOntology>) - Method in class org.protege.editor.owl.ui.ontology.wizard.move.byannotation.MoveAnnotationAxiomsByURIKit
 
getAxioms(Set<OWLOntology>) - Method in class org.protege.editor.owl.ui.ontology.wizard.move.byprofile.MoveAxiomsByProfileKit
 
getAxioms(Set<OWLOntology>) - Method in class org.protege.editor.owl.ui.ontology.wizard.move.byreference.MoveAxiomsByReferenceKit
 
getAxioms(Set<OWLOntology>, Set<OWLEntity>) - Method in class org.protege.editor.owl.ui.ontology.wizard.move.byreference.MoveAxiomsByReferenceKit
 
getAxioms(Set<OWLOntology>) - Method in class org.protege.editor.owl.ui.ontology.wizard.move.bytype.MoveAxiomsByTypeKit
 
getAxioms(Set<OWLOntology>) - Method in interface org.protege.editor.owl.ui.ontology.wizard.move.common.SignatureSelection
 
getAxioms(Set<OWLOntology>, Set<OWLEntity>) - Method in interface org.protege.editor.owl.ui.ontology.wizard.move.common.SignatureSelection
 
getAxioms(Set<OWLOntology>) - Method in class org.protege.editor.owl.ui.ontology.wizard.move.MoveAxiomsKit
 
getAxiomsToBeMoved() - Method in interface org.protege.editor.owl.ui.ontology.wizard.move.MoveAxiomsModel
 
getAxiomsToBeMoved() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.MoveAxiomsWizard
 
getAxiomType() - Method in class org.protege.editor.owl.ui.editor.AbstractOWLDescriptionEditor
 
getBackButtonEnabled() - Method in class org.protege.editor.core.ui.wizard.Wizard
Mirrors the WizardModel method of the same name.
getBackground() - Method in class org.protege.editor.core.ui.list.MListButton
 
getBackgroundColor() - Method in interface org.protege.editor.core.ui.view.ViewComponentPlugin
 
getBackgroundColor() - Method in class org.protege.editor.core.ui.view.ViewComponentPluginAdapter
 
getBackgroundColor() - Method in class org.protege.editor.core.ui.view.ViewComponentPluginJPFImpl
 
getBackgroundTaskManager() - Static method in class org.protege.editor.core.ProtegeApplication
 
getBackPanelDescriptor() - Method in class org.protege.editor.core.ui.wizard.WizardPanel
Override this class to provide the Object-based identifier of the panel that the user should traverse to when the Back button is pressed.
getBackPanelDescriptor() - Method in class org.protege.editor.owl.ui.action.ExportInferredOntologyIncludeAssertedAxiomsPanel
 
getBackPanelDescriptor() - Method in class org.protege.editor.owl.ui.action.ExportInferredOntologyURIPanel
 
getBackPanelDescriptor() - Method in class org.protege.editor.owl.ui.hierarchy.creation.MakeSiblingClassesDisjointPanel
Override this class to provide the Object-based identifier of the panel that the user should traverse to when the Back button is pressed.
getBackPanelDescriptor() - Method in class org.protege.editor.owl.ui.hierarchy.creation.TabIndentedHierarchyPanel
Override this class to provide the Object-based identifier of the panel that the user should traverse to when the Back button is pressed.
getBackPanelDescriptor() - Method in class org.protege.editor.owl.ui.ontology.imports.missing.CopyOptionPanel
 
getBackPanelDescriptor() - Method in class org.protege.editor.owl.ui.ontology.imports.missing.SpecifyFilePathPanel
 
getBackPanelDescriptor() - Method in class org.protege.editor.owl.ui.ontology.imports.wizard.ImportTypePage
 
getBackPanelDescriptor() - Method in class org.protege.editor.owl.ui.ontology.imports.wizard.LibraryPage
 
getBackPanelDescriptor() - Method in class org.protege.editor.owl.ui.ontology.imports.wizard.LoadedOntologyPage
 
getBackPanelDescriptor() - Method in class org.protege.editor.owl.ui.ontology.imports.wizard.LocalFilePage
 
getBackPanelDescriptor() - Method in class org.protege.editor.owl.ui.ontology.imports.wizard.URLPage
 
getBackPanelDescriptor() - Method in class org.protege.editor.owl.ui.ontology.wizard.create.PhysicalLocationPanel
 
getBackPanelDescriptor() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.CreateNewOntologyPanel
 
getBackPanelDescriptor() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.MoveAxiomsWizardKitConfigurationPanel
 
getBackPanelDescriptor() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.SelectActionPanel
 
getBackPanelDescriptor() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.SelectKitPanel
 
getBackPanelDescriptor() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.SelectSourceOntologiesPanel
 
getBackPanelDescriptor() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.SelectTargetOntologyPanel
 
getBackPanelDescriptor() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.SelectTargetOntologyTypePanel
 
getBaseURI() - Method in class org.protege.editor.owl.ui.ontology.OntologyPreferences
 
getBaseURI() - Method in class org.protege.editor.owl.ui.OWLEntityCreationPanel
 
getBeginColumn() - Method in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.SimpleCharStream
 
getBeginLine() - Method in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.SimpleCharStream
 
getBookMarkedURIs() - Method in class org.protege.editor.core.BookMarkedURIManager
 
getBoolean(String, boolean) - Method in class org.protege.editor.core.prefs.JavaBackedPreferencesImpl
 
getBoolean(String, boolean) - Method in interface org.protege.editor.core.prefs.Preferences
 
getBoolean(String, boolean) - Static method in class org.protege.editor.core.PropertyUtil
 
getBoolean(String) - Method in class org.protege.editor.owl.model.library.OntologyLibraryMemento
 
getBooleanParameterValue(IExtension, String, boolean) - Static method in class org.protege.editor.core.plugin.PluginProperties
 
getBooleanProperty(String, boolean) - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.options.OWLVizProperties
Deprecated. Gets a value for a boolean property.
getBorderInsets(Component) - Method in class org.protege.editor.owl.ui.framelist.OWLFrameListInferredSectionRowBorder
Returns the insets of the border.
getBounds() - Method in class org.protege.editor.core.ui.list.MListButton
 
getBuiltinDatatypes() - Method in class org.protege.editor.owl.model.util.OWLDataTypeUtils
 
getBundle(IExtension) - Method in class org.protege.editor.core.plugin.PluginUtilities
 
getBundle(IContributor) - Method in class org.protege.editor.core.plugin.PluginUtilities
 
getBundleManager() - Static method in class org.protege.editor.core.ProtegeApplication
 
getBundleVersion(Bundle) - Static method in class org.protege.editor.core.plugin.PluginUtilities
 
getButtons(Object) - Method in class org.coode.dlquery.ResultsList
 
getButtons(Object) - Method in class org.protege.editor.core.ui.list.MList
 
getButtons(Object) - Method in class org.protege.editor.owl.ui.framelist.OWLFrameList2
 
getByteArray(String, byte[]) - Method in class org.protege.editor.core.prefs.JavaBackedPreferencesImpl
 
getByteArray(String, byte[]) - Method in interface org.protege.editor.core.prefs.Preferences
 
getByteArrayList(String, List<byte[]>) - Method in class org.protege.editor.core.prefs.JavaBackedPreferencesImpl
 
getByteArrayList(String, List<byte[]>) - Method in interface org.protege.editor.core.prefs.Preferences
 
getCancelButtonEnabled() - Method in class org.protege.editor.core.ui.wizard.Wizard
Mirrors the WizardModel method of the same name.
getCategorisations() - Method in interface org.protege.editor.core.ui.view.ViewComponentPlugin
 
getCategorisations() - Method in class org.protege.editor.core.ui.view.ViewComponentPluginAdapter
 
getCategorisations() - Method in class org.protege.editor.core.ui.view.ViewComponentPluginJPFImpl
 
getCause() - Method in class org.protege.editor.core.ui.error.ErrorExplainer.ErrorExplanation
 
getCellEditorValue() - Method in class org.protege.editor.owl.ui.prefix.PrefixTableCellEditor
 
getCellObject() - Method in class org.protege.editor.owl.ui.table.BasicLinkedOWLObjectTable
Gets the cell object that the mouse is over
getChange(String, OWLDataFactory) - Method in class org.protege.editor.owl.model.hierarchy.tabbed.AbstractOWLObjectHierarchyCreator
 
getChange(String, String, OWLDataFactory) - Method in class org.protege.editor.owl.model.hierarchy.tabbed.AbstractOWLObjectHierarchyCreator
 
getChange(String, OWLDataFactory) - Method in class org.protege.editor.owl.model.hierarchy.tabbed.OWLClassHierarchyCreator
Deprecated.  
getChange(String, String, OWLDataFactory) - Method in class org.protege.editor.owl.model.hierarchy.tabbed.OWLClassHierarchyCreator
Deprecated.  
getChangedOntologies() - Method in class org.protege.editor.owl.model.io.OntologySourcesManager
 
getChangeRewriter() - Method in class org.protege.editor.owl.model.description.anonymouscls.AnonymousDefinedClassManager
 
getChanges() - Method in class org.protege.editor.owl.model.refactor.AllDifferentCreator
 
getChanges() - Method in class org.protege.editor.owl.model.refactor.EntityFindAndReplaceURIRenamer
 
getChanges() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.MoveAxiomsWizard
 
getCheckDelay() - Method in class org.protege.editor.owl.ui.clsdescriptioneditor.ExpressionEditorPreferences
 
getCheckedItems() - Method in class org.protege.editor.core.ui.util.CheckList
 
getChild() - Method in class org.protege.editor.owl.model.hierarchy.tabbed.Edge
 
getChildAt(int) - Method in class org.protege.editor.owl.ui.tree.OWLObjectTreeNode
 
getChildCount(N) - Method in class org.protege.editor.owl.ui.tree.OWLObjectTree
 
getChildCount() - Method in class org.protege.editor.owl.ui.tree.OWLObjectTreeNode
 
getChildCount(Object) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.AbstractOWLClassGraphModel
 
getChildCount(Object) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.OWLOntologyImportsGraphModel
 
getChildCount(Object) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.OWLVizAxiomGraphModel
 
getChildCount(Object) - Method in interface uk.ac.man.cs.mig.util.graph.model.GraphModel
Retrives the number of children that the specified object has.
getChildCount(Object) - Method in class uk.ac.man.cs.mig.util.graph.model.impl.DefaultGraphModel
Retrives the number of children that the specified object has.
getChildCount() - Method in class uk.ac.man.cs.mig.util.graph.model.impl.DefaultGraphNode
 
getChilderenUserObjects() - Method in class uk.ac.man.cs.mig.util.graph.model.impl.DefaultGraphNode
 
getChildNodes(OWLObjectTreeNode<N>) - Method in class org.protege.editor.owl.ui.tree.OWLObjectTree
 
getChildren(P) - Method in class org.protege.editor.owl.model.hierarchy.AbstractOWLPropertyHierarchyProvider
 
getChildren(OWLClass) - Method in class org.protege.editor.owl.model.hierarchy.AssertedClassHierarchyProvider
Deprecated.  
getChildren(OWLClass) - Method in class org.protege.editor.owl.model.hierarchy.AssertedClassHierarchyProvider2
 
getChildren(OWLClass) - Method in class org.protege.editor.owl.model.hierarchy.AssertedSuperClassHierarchyProvider
 
getChildren(OWLClass) - Method in class org.protege.editor.owl.model.hierarchy.cls.InferredOWLClassHierarchyProvider
 
getChildren(OWLClass) - Method in class org.protege.editor.owl.model.hierarchy.cls.InferredSuperClassHierarchyProvider
 
getChildren(OWLObject) - Method in class org.protege.editor.owl.model.hierarchy.IndividualsByInferredTypeHierarchyProvider
 
getChildren(OWLObject) - Method in class org.protege.editor.owl.model.hierarchy.IndividualsByTypeHierarchyProvider
 
getChildren(N) - Method in interface org.protege.editor.owl.model.hierarchy.OWLObjectHierarchyProvider
 
getChildren(OWLOntology) - Method in class org.protege.editor.owl.model.hierarchy.OWLOntologyHierarchyProvider
 
getChildren(OWLObjectProperty) - Method in class org.protege.editor.owl.model.hierarchy.property.InferredObjectPropertyHierarchyProvider
 
getChildren(OWLObject) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.AbstractOWLClassGraphModel
 
getChildren(Object) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.AbstractOWLClassGraphModel
 
getChildren(Object) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.OWLOntologyImportsGraphModel
 
getChildren(Object) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.OWLVizAxiomGraphModel
 
getChildren(Object) - Method in interface uk.ac.man.cs.mig.util.graph.model.GraphModel
Gets the children of the specified object
getChildren(Object) - Method in class uk.ac.man.cs.mig.util.graph.model.impl.DefaultGraphModel
Gets the children of the specified object
getChildren() - Method in class uk.ac.man.cs.mig.util.graph.model.impl.DefaultGraphNode
 
getChildrenHiddenCount(Object) - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultVisualisedObjectManager
Determines how many children of the specified object are hidden.
getChildrenHiddenCount(Object) - Method in interface uk.ac.man.cs.mig.util.graph.controller.VisualisedObjectManager
Determines how many children of the specified object are hidden.
getChildrenShownCount(Object) - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultVisualisedObjectManager
Determines how many children of the specified object are shown.
getChildrenShownCount(Object) - Method in interface uk.ac.man.cs.mig.util.graph.controller.VisualisedObjectManager
Determines how many children of the specified object are shown.
getClassAxiomChecker() - Method in class org.protege.editor.owl.ui.clsdescriptioneditor.ManchesterOWLExpressionCheckerFactory
 
getClassAxiomChecker() - Method in interface org.protege.editor.owl.ui.clsdescriptioneditor.OWLExpressionCheckerFactory
 
getClassAxioms(OWLDescription, OWLOntology) - Method in class org.protege.editor.owl.ui.frame.cls.AbstractOWLClassAxiomFrameSection
 
getClassAxioms(OWLDescription, OWLOntology) - Method in class org.protege.editor.owl.ui.frame.OWLClassAssertionAxiomIndividualSection
 
getClassAxioms(OWLDescription, OWLOntology) - Method in class org.protege.editor.owl.ui.frame.OWLDisjointClassesAxiomFrameSection
 
getClassAxioms(OWLDescription, OWLOntology) - Method in class org.protege.editor.owl.ui.frame.OWLEquivalentClassesAxiomFrameSection
 
getClassAxioms(OWLDescription, OWLOntology) - Method in class org.protege.editor.owl.ui.frame.OWLSubClassAxiomFrameSection
 
getClassRadius() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.ClassRadiusDialog
Retrives the class radius entered by the user.
getClassRadius() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.ClassRadiusDialogPage
 
getClipboard() - Method in class org.protege.editor.owl.ui.view.ViewClipboard
 
getClosureAxiom(OWLClass, OWLObjectProperty, OWLDataFactory, Set<OWLOntology>) - Static method in class org.protege.editor.owl.model.util.ClosureAxiomFactory
 
getClosureAxiom() - Method in class org.protege.editor.owl.model.util.ClosureAxiomFactory
Deprecated. use getClosureRestriction()
getClosureRestriction() - Method in class org.protege.editor.owl.model.util.ClosureAxiomFactory
Gets a universal restriction (OWLObjectAllRestriction) that closes off the existential restrictions that have been visited by this visitor.
getClses() - Method in class uk.ac.man.cs.mig.coode.owlviz.command.ShowAllClassesCommand
 
getColor(String, Color) - Static method in class org.protege.editor.core.PropertyUtil
 
getColor(OWLEntity, Color) - Method in class org.protege.editor.owl.ui.renderer.OWLCellRenderer
 
getColor(OWLEntity) - Method in class org.protege.editor.owl.ui.renderer.OWLEntityColorProvider
Gets the color that should be used to paint the specified entity name.
getColorParameterValue(IExtension, String, Color) - Static method in class org.protege.editor.core.plugin.PluginProperties
 
getColumn() - Method in class org.protege.editor.core.ui.error.ErrorExplainer.ParseErrorExplanation
 
getColumn() - Method in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.SimpleCharStream
Deprecated.  
getColumnClass(int) - Method in class org.protege.editor.core.ui.util.CheckTableModel
 
getColumnCount() - Method in class org.protege.editor.core.ui.about.PluginInfoTableModel
 
getColumnCount() - Method in class org.protege.editor.core.ui.RepositoryTableModel
 
getColumnCount() - Method in class org.protege.editor.owl.ui.metrics.MetricsTableModel
 
getColumnCount() - Method in class org.protege.editor.owl.ui.ontology.location.PhysicalLocationTableModel
 
getColumnCount() - Method in class org.protege.editor.owl.ui.prefix.PrefixMapperTableModel
 
getColumnName(int) - Method in class org.protege.editor.core.ui.about.PluginInfoTableModel
 
getColumnName(int) - Method in class org.protege.editor.core.ui.RepositoryTableModel
 
getColumnName(int) - Method in class org.protege.editor.owl.ui.metrics.MetricsTableModel
 
getColumnName(int) - Method in class org.protege.editor.owl.ui.ontology.location.PhysicalLocationTableModel
 
getColumnName(int) - Method in class org.protege.editor.owl.ui.prefix.PrefixMapperTableModel
 
getComponent() - Method in class org.coode.dlquery.ResultsList
 
getComponent() - Method in class org.protege.editor.core.ui.preferences.node.BooleanPreferenceNode
 
getComponent() - Method in interface org.protege.editor.core.ui.preferences.node.PreferenceNode
 
getComponent() - Method in class org.protege.editor.core.ui.preferences.node.StringPreferenceNode
 
getComponent() - Method in class org.protege.editor.owl.ui.editor.AbstractRestrictionCreatorPanel
 
getComponent() - Method in class org.protege.editor.owl.ui.editor.OWLClassSelectorWrapper
 
getComponent() - Method in interface org.protege.editor.owl.ui.editor.OWLDescriptionEditor
 
getComponent() - Method in class org.protege.editor.owl.ui.editor.OWLDescriptionExpressionEditor
 
getComponent() - Method in class org.protege.editor.owl.ui.frame.OWLAnnonymousIndividualAnnotationValueEditor
 
getComponent() - Method in interface org.protege.editor.owl.ui.frame.OWLAnnotationValueEditor
 
getComponent() - Method in class org.protege.editor.owl.ui.frame.OWLConstantEditor
 
getComponent() - Method in class org.protege.editor.owl.ui.frame.OWLIndividualAnnotationValueEditor
 
getComponent() - Method in class org.protege.editor.owl.ui.framelist.OWLFrameList2
 
getComponent() - Method in class org.protege.editor.owl.ui.list.OWLLinkedObjectList
 
getComponent() - Method in interface org.protege.editor.owl.ui.renderer.LinkedObjectComponent
 
getComponent() - Method in class org.protege.editor.owl.ui.table.BasicLinkedOWLObjectTable
 
getComponent() - Method in interface org.protege.editor.owl.ui.transfer.OWLObjectDropTarget
 
getComponent() - Method in class org.protege.editor.owl.ui.tree.OWLLinkedObjectTree
 
getComponent() - Method in class org.protege.editor.owl.ui.tree.OWLObjectTree
 
getComponentNode() - Method in class org.protege.editor.core.ui.view.View
 
getConfigurationPanels() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.byannotation.MoveAnnotationAxiomsByURIKit
 
getConfigurationPanels() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.byprofile.MoveAxiomsByProfileKit
 
getConfigurationPanels() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.byreference.MoveAxiomsByReferenceKit
 
getConfigurationPanels() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.bytype.MoveAxiomsByTypeKit
 
getConfigurationPanels() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.MoveAxiomsKit
 
getConstant() - Method in class org.protege.editor.owl.ui.frame.OWLDataPropertyConstantPair
 
getContentBorderInsets(int) - Method in class org.protege.editor.core.ui.tabbedpane.ViewTabbedPaneUI
 
getContext() - Static method in class org.protege.editor.core.ProtegeApplication
 
getController() - Method in class uk.ac.man.cs.mig.util.graph.ui.GraphComponent
 
getCoveringAxiom() - Method in class org.protege.editor.owl.model.util.CoveringAxiomFactory
 
getCreateSibKeyStroke() - Static method in class org.protege.editor.owl.model.OWLWorkspace
 
getCreateSubKeyStroke() - Static method in class org.protege.editor.owl.model.OWLWorkspace
 
getCurrentEntity() - Method in class org.protege.editor.owl.model.inference.NoOpReasoner
 
getCurrentEntity() - Method in class uk.ac.manchester.cs.factplusplus.protege.FaCTPlusPlusReasonerWrapper
 
getCurrentFileDirectory() - Static method in class org.protege.editor.core.ui.util.UIUtil
 
getCurrentPage() - Method in class uk.ac.man.cs.mig.util.wizard.Wizard
Gets the page currently being displayed.
getCurrentPopupPage() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.popup.PopupManager
 
getCurrentReasoner() - Method in interface org.protege.editor.owl.model.inference.OWLReasonerManager
Gets the current reasoner.
getCurrentReasoner() - Method in class org.protege.editor.owl.model.inference.OWLReasonerManagerImpl
 
getCurrentReasonerFactory() - Method in interface org.protege.editor.owl.model.inference.OWLReasonerManager
 
getCurrentReasonerFactory() - Method in class org.protege.editor.owl.model.inference.OWLReasonerManagerImpl
 
getCurrentReasonerFactoryId() - Method in interface org.protege.editor.owl.model.inference.OWLReasonerManager
Gets the ID of the current reasoner.
getCurrentReasonerFactoryId() - Method in class org.protege.editor.owl.model.inference.OWLReasonerManagerImpl
 
getCurrentReasonerName() - Method in interface org.protege.editor.owl.model.inference.OWLReasonerManager
 
getCurrentReasonerName() - Method in class org.protege.editor.owl.model.inference.OWLReasonerManagerImpl
 
getCurrentSelection() - Method in class org.protege.editor.owl.ui.selector.OWLEntitySelectorPanel
 
getCurrentTarget() - Method in class org.protege.editor.owl.ui.action.FocusedComponentAction
 
getCurrentUpdateInfo() - Method in class org.protege.editor.core.update.PluginTable
 
getCurrentVersion() - Method in class org.protege.editor.core.update.PluginInfo
 
getCurrentWorkspace() - Method in class org.protege.editor.core.ui.action.NewAction
 
getCurrentWorkspace() - Method in class org.protege.editor.core.ui.action.OpenAction
 
getCurrentWorkspace() - Method in interface org.protege.editor.core.ui.util.OpenRequestHandler
 
getCurrentWorkspace() - Method in class org.protege.editor.owl.ui.action.OpenFromURIAction
 
getCustomTabPlugins(TabbedWorkspace) - Method in class org.protege.editor.core.ui.workspace.CustomWorkspaceTabsManager
Gets the plugins that define the custom tabs.
getCustomTabs() - Method in class org.protege.editor.core.ui.workspace.CustomWorkspaceTabsManager
Gets a list of the custom tabs that have been defined.
getCustomTabsManager() - Method in class org.protege.editor.core.ui.workspace.TabbedWorkspace
 
getCustomTabsManager() - Method in class org.protege.editor.owl.model.OWLWorkspace
 
getDataFactory() - Method in class org.protege.editor.owl.model.hierarchy.tabbed.AbstractOWLObjectHierarchyCreator
 
getDataFactory() - Method in class org.protege.editor.owl.ui.editor.AbstractRestrictionCreatorPanel
 
getDataFactory() - Method in class org.protege.editor.owl.ui.frame.OWLImportsDeclarationEditor
 
getDataFolder() - Static method in class org.protege.editor.core.FileManager
 
getDataPropertyRelationships(OWLIndividual) - Method in class org.protege.editor.owl.model.inference.NoOpReasoner
 
getDatatypeSelector() - Method in class org.protege.editor.owl.ui.UIHelper
 
getDeepestComponent(Point) - Method in class uk.ac.man.cs.mig.util.popup.PopupComponent
Obtains the deepest component below the glass pane at the specified point.
getDefaultBaseURI() - Method in class org.protege.editor.owl.model.entity.CustomOWLEntityFactory
 
getDefaultBaseURI() - Static method in class org.protege.editor.owl.model.entity.EntityCreationPreferences
 
getDefaultOntologies() - Method in class org.protege.editor.owl.ui.ontology.wizard.AbstractSelectOntologiesPage
Override to set the ontologies that are first shown
getDefaultOntologies() - Method in class org.protege.editor.owl.ui.ontology.wizard.merge.SelectOntologiesPage
Override to set the ontologies that are first shown
getDefaultOntologies() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.SelectSourceOntologiesPanel
 
getDefaultRenderer(Class<?>) - Method in class org.protege.editor.core.ui.util.CheckTable
 
getDefaultSeparator() - Static method in class org.protege.editor.owl.model.entity.EntityCreationPreferences
 
getDefaultState() - Method in class org.protege.editor.core.ui.view.ViewComponentPluginAdapter
 
getDefaultTrackerRadius() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizPreferences
 
getDefaultViewConfigFile() - Method in class org.protege.editor.core.ui.workspace.CustomWorkspaceTabsManager.CustomTabPlugin
 
getDefaultViewConfigFile() - Method in interface org.protege.editor.core.ui.workspace.WorkspaceTabPlugin
 
getDefaultViewConfigFile() - Method in class org.protege.editor.core.ui.workspace.WorkspaceTabPluginJPFImpl
 
getDefaultViewConfigurationFile() - Method in class org.protege.editor.core.ui.workspace.WorkspaceTab
 
getDeletionChanges() - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSectionRow
Deletes this row.
getDeletionChanges() - Method in interface org.protege.editor.owl.ui.frame.OWLFrameSectionRow
Gets the changes which are required to delete this row.
getDelimeter() - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSectionRow
 
getDelimeter() - Method in class org.protege.editor.owl.ui.frame.OWLDataPropertyAssertionAxiomFrameSectionRow
 
getDelimeter() - Method in class org.protege.editor.owl.ui.frame.OWLNegativeDataPropertyAssertionFrameSectionRow
 
getDelimeter() - Method in class org.protege.editor.owl.ui.frame.OWLNegativeObjectPropertyAssertionFrameSectionRow
 
getDelimeter() - Method in class org.protege.editor.owl.ui.frame.OWLObjectPropertyAssertionAxiomFrameSectionRow
 
getDelta() - Method in class org.protege.editor.core.ui.action.AbstractFontSizeAction
 
getDelta() - Method in class org.protege.editor.core.ui.action.DecreaseFontSizeAction
 
getDelta() - Method in class org.protege.editor.core.ui.action.IncreaseFontSizeAction
 
getDescendantClasses(OWLDescription) - Method in class org.protege.editor.owl.model.inference.NoOpReasoner
 
getDescendantProperties(OWLObjectProperty) - Method in class org.protege.editor.owl.model.inference.NoOpReasoner
 
getDescendantProperties(OWLDataProperty) - Method in class org.protege.editor.owl.model.inference.NoOpReasoner
 
getDescendants(N) - Method in class org.protege.editor.owl.model.hierarchy.AbstractOWLObjectHierarchyProvider
 
getDescendants(OWLClass) - Method in class org.protege.editor.owl.model.hierarchy.cls.InferredOWLClassHierarchyProvider
 
getDescendants(N) - Method in interface org.protege.editor.owl.model.hierarchy.OWLObjectHierarchyProvider
 
getDescription() - Method in class org.protege.editor.owl.model.description.AbstractQueryNode
 
getDescription() - Method in class org.protege.editor.owl.model.description.OWLDescriptionLeafNode
 
getDescription() - Method in interface org.protege.editor.owl.model.description.OWLDescriptionNode
 
getDescription() - Method in class org.protege.editor.owl.model.library.folder.FolderOntologyLibrary
 
getDescription() - Method in interface org.protege.editor.owl.model.library.OntologyLibrary
Gets a description of the library, which can be used in user interfaces.
getDescriptionHistory() - Method in class org.protege.editor.owl.ui.clsdescriptioneditor.OWLExpressionHistoryCompleter
 
getDescriptions() - Method in class org.protege.editor.owl.model.util.NestedIntersectionFlattener
 
getDescriptions() - Method in class org.protege.editor.owl.ui.editor.AbstractRestrictionCreatorPanel
 
getDescriptions() - Method in class org.protege.editor.owl.ui.editor.OWLClassSelectorWrapper
 
getDescriptions() - Method in interface org.protege.editor.owl.ui.editor.OWLDescriptionEditor
 
getDescriptions() - Method in class org.protege.editor.owl.ui.editor.OWLDescriptionExpressionEditor
 
getDescriptors() - Method in class org.protege.editor.core.editorkit.RecentEditorKitManager
 
getDialog() - Method in class org.protege.editor.core.ui.wizard.Wizard
Returns an instance of the JDialog that this class created.
getDialogMode() - Method in class org.protege.editor.core.ui.util.FilePathPanel
 
getDigitLength() - Method in class org.protege.editor.owl.model.entity.AbstractIDGenerator
 
getDirection() - Method in interface uk.ac.man.cs.mig.util.graph.graph.Edge
Gets the direction of the Edge.
getDirection() - Method in class uk.ac.man.cs.mig.util.graph.graph.impl.DefaultEdge
Gets the direction of the Edge.
getDirtyOntologies() - Method in interface org.protege.editor.owl.model.OWLModelManager
Gets the set of loaded ontologies that have been edited but haven't been saved.
getDirtyOntologies() - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
 
getDisjointClassesAxiomSymbol() - Method in class org.protege.editor.owl.ui.frame.ExplanationFrame
 
getDisplayComponent() - Method in interface org.protege.editor.owl.model.OWLEntityDisplayProvider
 
getDocumentation() - Method in class org.protege.editor.core.editorkit.plugin.EditorKitHookPluginImpl
 
getDocumentation() - Method in class org.protege.editor.core.OntologyRepositoryFactoryPluginImpl
 
getDocumentation(IExtension) - Static method in class org.protege.editor.core.plugin.JPFUtil
 
getDocumentation(IExtension) - Method in class org.protege.editor.core.plugin.PluginUtilities
 
getDocumentation() - Method in interface org.protege.editor.core.plugin.ProtegePlugin
 
getDocumentation() - Method in class org.protege.editor.core.ui.action.ToolBarActionPluginJPFImpl
 
getDocumentation() - Method in class org.protege.editor.core.ui.menu.MenuActionPluginJPFImpl
 
getDocumentation() - Method in class org.protege.editor.core.ui.preferences.PreferencesPanelPluginJPFImpl
 
getDocumentation() - Method in class org.protege.editor.core.ui.view.ViewComponentPluginAdapter
 
getDocumentation() - Method in class org.protege.editor.core.ui.view.ViewComponentPluginJPFImpl
 
getDocumentation() - Method in class org.protege.editor.core.ui.workspace.CustomWorkspaceTabsManager.CustomTabPlugin
 
getDocumentation() - Method in class org.protege.editor.core.ui.workspace.WorkspaceTabPluginJPFImpl
 
getDocumentation() - Method in class org.protege.editor.owl.model.inference.ProtegeOWLReasonerFactoryPluginJPFImpl
 
getDocumentation() - Method in class org.protege.editor.owl.model.io.IOListenerPluginImpl
 
getDocumentation() - Method in class org.protege.editor.owl.model.library.OntologyLibraryFactoryPluginJPFImpl
 
getDocumentation() - Method in class org.protege.editor.owl.ui.editor.OWLDescriptionEditorPluginImpl
 
getDocumentation() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.MoveAxiomsKitPluginImpl
 
getDocumentation() - Method in class org.protege.editor.owl.ui.renderer.OWLEntityColorProviderPluginJPFImpl
 
getDomains(OWLObjectProperty) - Method in class org.protege.editor.owl.model.inference.NoOpReasoner
 
getDomains(OWLDataProperty) - Method in class org.protege.editor.owl.model.inference.NoOpReasoner
 
getDotProcessPath() - Method in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.DotLayoutEngineProperties
 
getDouble(String, double) - Method in class org.protege.editor.core.prefs.JavaBackedPreferencesImpl
 
getDouble(String, double) - Method in interface org.protege.editor.core.prefs.Preferences
 
getDoubleProperty(String, double) - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.options.OWLVizProperties
Deprecated. Gets a value for a double valued property.
getDownloadURL() - Method in class org.protege.editor.core.update.PluginInfo
 
getDropObjects(Transferable) - Method in class org.protege.editor.owl.ui.table.OWLObjectDropTargetListener
 
getDropRow() - Method in class org.protege.editor.owl.ui.tree.OWLObjectTree
 
getDropRowBounds() - Method in class org.protege.editor.owl.ui.tree.OWLObjectTree
 
getEdgeBrightness() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.options.OWLVizViewOptions
 
getEdgeBrightness() - Static method in class uk.ac.man.cs.mig.util.graph.renderer.impl.DefaultEdgeRenderer
Gets the brightness of edges in the graph.
getEdgeColor(Edge, boolean) - Method in class uk.ac.man.cs.mig.util.graph.renderer.impl.DefaultEdgeRenderer
 
getEdgeCount() - Method in interface uk.ac.man.cs.mig.util.graph.graph.Graph
Returns the number of Edges that the Graph contains.
getEdgeCount() - Method in class uk.ac.man.cs.mig.util.graph.graph.impl.DefaultGraph
Returns the number of Edges that the Graph contains.
getEdgeFactory() - Method in interface uk.ac.man.cs.mig.util.graph.controller.Controller
Gets the factory that produces Edges
getEdgeFactory() - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultController
Gets the factory that produces Edges
getEdgeFactory(EdgeFactory) - Method in class uk.ac.man.cs.mig.util.graph.ui.GraphComponent
 
getEdgeIterator() - Method in interface uk.ac.man.cs.mig.util.graph.graph.Graph
Retrieves an Iterator that can be used to traverse the Edges in the Graph.
getEdgeIterator() - Method in class uk.ac.man.cs.mig.util.graph.graph.impl.DefaultGraph
Retrieves an Iterator that can be used to traverse the Edges in the Graph.
getEdgeLabel(Edge) - Method in interface uk.ac.man.cs.mig.util.graph.renderer.EdgeLabelRenderer
Retrives the label for the specified Edge.
getEdgeLabel(Edge) - Method in class uk.ac.man.cs.mig.util.graph.renderer.impl.DefaultEdgeLabelRenderer
Gets the label for an Edge using the toString method of the Edge's userObject.
getEdgeLabelRenderer() - Method in interface uk.ac.man.cs.mig.util.graph.controller.Controller
Gets the renderer that is used to retrieve the labels for Edges.
getEdgeLabelRenderer() - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultController
Gets the renderer used to generate labels for Edges
getEdgeObject(Object, Object) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.OWLVizAxiomGraphModel
Return an edge object for the given parent and child
getEdgeRenderer() - Method in interface uk.ac.man.cs.mig.util.graph.controller.Controller
Gets the renderer that is used to paint Edges
getEdgeRenderer() - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultController
Gets the renderer that is used to paint Edges
getEdges() - Method in interface uk.ac.man.cs.mig.util.graph.graph.Graph
Gets the Edges contained in the Graph as an array.
getEdges() - Method in class uk.ac.man.cs.mig.util.graph.graph.impl.DefaultGraph
Gets the Edges contained in the Graph as an array.
getEdges() - Method in class uk.ac.man.cs.mig.util.graph.ui.GraphView
Gets an Iterator that can be used to traverse the Edges in the Graph
getEdgeStroke(Edge, boolean) - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.renderer.OWLClsEdgeRenderer
 
getEdgeStroke(Edge, boolean) - Method in class uk.ac.man.cs.mig.util.graph.renderer.impl.DefaultEdgeRenderer
 
getEditedObject() - Method in class org.protege.editor.owl.ui.editor.OWLClassDescriptionEditor
 
getEditedObject() - Method in class org.protege.editor.owl.ui.frame.editor.OWLDataPropertySetEditor
 
getEditedObject() - Method in class org.protege.editor.owl.ui.frame.editor.OWLObjectPropertySetEditor
 
getEditedObject() - Method in class org.protege.editor.owl.ui.frame.OWLAnnonymousIndividualAnnotationValueEditor
 
getEditedObject() - Method in class org.protege.editor.owl.ui.frame.OWLAnnotationEditor
Gets the object that has been edited.
getEditedObject() - Method in interface org.protege.editor.owl.ui.frame.OWLAnnotationValueEditor
 
getEditedObject() - Method in class org.protege.editor.owl.ui.frame.OWLClassDescriptionSetEditor
 
getEditedObject() - Method in class org.protege.editor.owl.ui.frame.OWLConstantEditor
 
getEditedObject() - Method in class org.protege.editor.owl.ui.frame.OWLDataPropertyEditor
 
getEditedObject() - Method in class org.protege.editor.owl.ui.frame.OWLDataPropertyRelationshipEditor
 
getEditedObject() - Method in class org.protege.editor.owl.ui.frame.OWLDataRangeEditor
 
getEditedObject() - Method in interface org.protege.editor.owl.ui.frame.OWLFrameSectionRowObjectEditor
 
getEditedObject() - Method in class org.protege.editor.owl.ui.frame.OWLGeneralAxiomEditor
Gets the object that has been edited.
getEditedObject() - Method in class org.protege.editor.owl.ui.frame.OWLImportsDeclarationEditor
 
getEditedObject() - Method in class org.protege.editor.owl.ui.frame.OWLIndividualAnnotationValueEditor
 
getEditedObject() - Method in class org.protege.editor.owl.ui.frame.OWLIndividualEditor
Gets the object that has been edited.
getEditedObject() - Method in class org.protege.editor.owl.ui.frame.OWLIndividualSetEditor
 
getEditedObject() - Method in class org.protege.editor.owl.ui.frame.OWLObjectPropertyChainEditor
 
getEditedObject() - Method in class org.protege.editor.owl.ui.frame.OWLObjectPropertyEditor
 
getEditedObject() - Method in class org.protege.editor.owl.ui.frame.OWLObjectPropertyIndividualPairEditor
 
getEditedObject() - Method in class org.protege.editor.owl.ui.frame.SWRLRuleEditor
 
getEditedObjects() - Method in class org.protege.editor.owl.ui.editor.OWLClassDescriptionEditor
 
getEditedObjects() - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSectionRowObjectEditor
 
getEditedObjects() - Method in interface org.protege.editor.owl.ui.frame.OWLFrameSectionRowObjectEditor
 
getEditedObjects() - Method in class org.protege.editor.owl.ui.frame.OWLImportsDeclarationEditor
 
getEditedObjects() - Method in class org.protege.editor.owl.ui.frame.OWLIndividualEditor
 
getEditedObjects() - Method in class org.protege.editor.owl.ui.frame.OWLObjectPropertyIndividualPairEditor
 
getEditingComponent(Object) - Method in interface org.protege.editor.owl.ui.framelist.ObjectEditorHandler
 
getEditor() - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSection
 
getEditor() - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSectionRow
 
getEditor() - Method in interface org.protege.editor.owl.ui.frame.OWLFrameObject
 
getEditor() - Method in interface org.protege.editor.owl.ui.frame.OWLFrameSection
 
getEditorComponent() - Method in class org.protege.editor.owl.ui.editor.OWLClassDescriptionEditor
Gets a component that will be used to edit the specified object.
getEditorComponent() - Method in class org.protege.editor.owl.ui.frame.editor.OWLDataPropertySetEditor
 
getEditorComponent() - Method in class org.protege.editor.owl.ui.frame.editor.OWLObjectPropertySetEditor
 
getEditorComponent() - Method in class org.protege.editor.owl.ui.frame.OWLAnnotationEditor
 
getEditorComponent() - Method in class org.protege.editor.owl.ui.frame.OWLClassDescriptionSetEditor
 
getEditorComponent() - Method in class org.protege.editor.owl.ui.frame.OWLDataPropertyEditor
 
getEditorComponent() - Method in class org.protege.editor.owl.ui.frame.OWLDataPropertyRelationshipEditor
 
getEditorComponent() - Method in class org.protege.editor.owl.ui.frame.OWLDataRangeEditor
 
getEditorComponent() - Method in interface org.protege.editor.owl.ui.frame.OWLFrameSectionRowObjectEditor
 
getEditorComponent() - Method in class org.protege.editor.owl.ui.frame.OWLGeneralAxiomEditor
Gets a component that will be used to edit the specified object.
getEditorComponent() - Method in class org.protege.editor.owl.ui.frame.OWLImportsDeclarationEditor
 
getEditorComponent() - Method in class org.protege.editor.owl.ui.frame.OWLIndividualEditor
Gets a component that will be used to edit the specified object.
getEditorComponent() - Method in class org.protege.editor.owl.ui.frame.OWLIndividualSetEditor
 
getEditorComponent() - Method in class org.protege.editor.owl.ui.frame.OWLObjectPropertyChainEditor
 
getEditorComponent() - Method in class org.protege.editor.owl.ui.frame.OWLObjectPropertyEditor
 
getEditorComponent() - Method in class org.protege.editor.owl.ui.frame.OWLObjectPropertyIndividualPairEditor
 
getEditorComponent() - Method in class org.protege.editor.owl.ui.frame.SWRLRuleEditor
 
getEditorKit() - Method in class org.protege.editor.core.editorkit.plugin.EditorKitHook
 
getEditorKit() - Method in class org.protege.editor.core.ui.action.ProtegeAction
 
getEditorKit() - Method in interface org.protege.editor.core.ui.action.ProtegeActionPlugin
Gets the EditorKit that instances of this plugin will act on.
getEditorKit() - Method in class org.protege.editor.core.ui.action.ProtegeActionPluginJPFImpl
Gets the EditorKit that instances of this plugin will act on.
getEditorKit() - Method in class org.protege.editor.core.ui.preferences.PreferencesPanel
 
getEditorKit() - Method in class org.protege.editor.core.ui.wizard.AbstractWizardPanel
 
getEditorKit() - Method in class org.protege.editor.core.ui.workspace.Workspace
Gets the EditorKit that this Workspace belongs to.
getEditorKit() - Method in class org.protege.editor.owl.model.OWLEditorKitHook
 
getEditorKit() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.MoveAxiomsKitConfigurationPanel
 
getEditorKitCount() - Method in class org.protege.editor.core.editorkit.EditorKitManager
Gets the number of editor kits which are being managed by this manager.
getEditorKitFactory() - Method in class org.protege.editor.core.editorkit.AbstractEditorKit
 
getEditorKitFactory() - Method in interface org.protege.editor.core.editorkit.EditorKit
Gets the factory that created the clsdescriptioneditor kit.
getEditorKitFactory(EditorKitFactoryPlugin) - Method in class org.protege.editor.core.ProtegeManager
Gets an EditorKitFactory by its corresponding plugin.
getEditorKitFactoryID() - Method in class org.protege.editor.core.editorkit.EditorKitDescriptor
 
getEditorKitFactoryPlugins() - Method in class org.protege.editor.core.ProtegeManager
Obtains a list of the installed EditorKitFactory plugins.
getEditorKitId() - Method in interface org.protege.editor.core.OntologyRepositoryEntry
Gets the editor kit factory ID that should be used to load this ontology.
getEditorKitManager() - Method in class org.protege.editor.core.ProtegeManager
Gets the EditorKitManager, which controls the selected EditorKit etc.
getEditorKits() - Method in class org.protege.editor.core.editorkit.EditorKitManager
 
getEditorName() - Method in class org.protege.editor.owl.ui.editor.AbstractOWLDescriptionEditor
 
getEditorName() - Method in interface org.protege.editor.owl.ui.editor.OWLDescriptionEditor
 
getEditorTypeName() - Method in class org.protege.editor.owl.ui.frame.OWLAnnonymousIndividualAnnotationValueEditor
 
getEditorTypeName() - Method in interface org.protege.editor.owl.ui.frame.OWLAnnotationValueEditor
 
getEditorTypeName() - Method in class org.protege.editor.owl.ui.frame.OWLConstantEditor
 
getEditorTypeName() - Method in class org.protege.editor.owl.ui.frame.OWLIndividualAnnotationValueEditor
 
getEmptyPlugin(String, String) - Method in class org.protege.editor.core.ui.view.ViewComponentFactory
 
getEndColumn() - Method in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.SimpleCharStream
 
getEndIndex() - Method in exception org.protege.editor.owl.model.description.OWLExpressionParserException
 
getEndLine() - Method in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.SimpleCharStream
 
getEntailedAxiom() - Method in class org.protege.editor.owl.ui.frame.ExplanationFrameSection
 
getEntities(String) - Method in interface org.protege.editor.owl.model.find.EntityFinder
Gets the entities that match the specified string.
getEntities(String, boolean) - Method in interface org.protege.editor.owl.model.find.EntityFinder
 
getEntities(String) - Method in class org.protege.editor.owl.model.find.EntityFinderImpl
 
getEntities(String, boolean) - Method in class org.protege.editor.owl.model.find.EntityFinderImpl
 
getEntities() - Method in class org.protege.editor.owl.model.selection.axioms.EntityReferencingAxiomsStrategy
 
getEntityCreationSet() - Method in class org.protege.editor.owl.ui.CreateDefinedClassPanel
 
getEntityFinder() - Method in interface org.protege.editor.owl.model.OWLModelManager
 
getEntityFinder() - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
 
getEntityName() - Method in class org.protege.editor.owl.ui.OWLEntityCreationPanel
 
getEntries() - Method in interface org.protege.editor.core.OntologyRepository
 
getEntries() - Method in class org.protege.editor.core.ui.error.ErrorLog
 
getEntries() - Method in class org.protege.editor.owl.model.repository.ManchesterRepository
 
getEntryAt(int) - Method in class org.protege.editor.core.ui.RepositoryTableModel
 
getEquivalenceClass(X) - Method in class org.protege.editor.owl.model.hierarchy.roots.EquivalenceRelation
 
getEquivalentClasses(OWLClass) - Method in class org.protege.editor.owl.model.hierarchy.cls.InferredSuperClassHierarchyProvider
 
getEquivalentClasses(OWLDescription) - Method in class org.protege.editor.owl.model.inference.NoOpReasoner
 
getEquivalentClassesAxiomSymbol() - Method in class org.protege.editor.owl.ui.frame.ExplanationFrame
 
getEquivalentObjects() - Method in class org.protege.editor.owl.ui.tree.OWLObjectTreeNode
 
getEquivalentProperties(OWLObjectProperty) - Method in class org.protege.editor.owl.model.inference.NoOpReasoner
 
getEquivalentProperties(OWLDataProperty) - Method in class org.protege.editor.owl.model.inference.NoOpReasoner
 
getEquivalents(P) - Method in class org.protege.editor.owl.model.hierarchy.AbstractOWLPropertyHierarchyProvider
 
getEquivalents(OWLClass) - Method in class org.protege.editor.owl.model.hierarchy.AssertedClassHierarchyProvider
Deprecated.  
getEquivalents(OWLClass) - Method in class org.protege.editor.owl.model.hierarchy.AssertedClassHierarchyProvider2
 
getEquivalents(OWLClass) - Method in class org.protege.editor.owl.model.hierarchy.AssertedSuperClassHierarchyProvider
 
getEquivalents(OWLClass) - Method in class org.protege.editor.owl.model.hierarchy.cls.InferredOWLClassHierarchyProvider
 
getEquivalents(OWLClass) - Method in class org.protege.editor.owl.model.hierarchy.cls.InferredSuperClassHierarchyProvider
 
getEquivalents(OWLObject) - Method in class org.protege.editor.owl.model.hierarchy.IndividualsByInferredTypeHierarchyProvider
 
getEquivalents(OWLObject) - Method in class org.protege.editor.owl.model.hierarchy.IndividualsByTypeHierarchyProvider
 
getEquivalents(N) - Method in interface org.protege.editor.owl.model.hierarchy.OWLObjectHierarchyProvider
 
getEquivalents(OWLOntology) - Method in class org.protege.editor.owl.model.hierarchy.OWLOntologyHierarchyProvider
 
getEquivalents(OWLObjectProperty) - Method in class org.protege.editor.owl.model.hierarchy.property.InferredObjectPropertyHierarchyProvider
 
getErrorExplanation(T, boolean) - Method in class org.protege.editor.core.ui.error.ErrorExplainer
 
getErrorLog() - Static method in class org.protege.editor.core.ProtegeApplication
 
getErrorLog() - Method in class org.protege.editor.core.ui.error.ErrorLogPanel
 
getErrors() - Method in class org.protege.editor.owl.model.refactor.EntityFindAndReplaceURIRenamer
 
getEscapedRendering(String) - Static method in class org.protege.editor.owl.ui.renderer.RenderingEscapeUtils
Produces an "escaped" rendering.
getEventSource() - Method in class org.protege.editor.core.ModelManagerEvent
 
getEventType() - Method in class org.protege.editor.core.ModelManagerEvent
 
getExactlyKeyWord() - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererDLSyntax
 
getExactlyKeyWord() - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
getExpectedKeyWords() - Method in exception org.protege.editor.owl.model.description.OWLExpressionParserException
 
getExplanationHandler() - Method in class org.protege.editor.owl.ui.framelist.OWLFrameList2
 
getExportFormats() - Static method in class uk.ac.man.cs.mig.util.graph.export.ExportFormatManager
Gets an array of the available ExportFormats
getExpression(OWLClass) - Method in class org.protege.editor.owl.model.description.anonymouscls.AnonymousDefinedClassManager
 
getExpressionChecker() - Method in class org.protege.editor.owl.ui.clsdescriptioneditor.ExpressionEditor
 
getExtension() - Method in class org.protege.editor.core.ui.action.ProtegeActionPluginJPFImpl
 
getExtensionMatcher() - Method in class org.protege.editor.core.editorkit.plugin.EditorKitHookPluginLoader
 
getExtensionMatcher() - Method in class org.protege.editor.core.OntologyRepositoryFactoryPluginLoader
 
getExtensionMatcher() - Method in class org.protege.editor.core.plugin.AbstractPluginLoader
This method needs to be overriden to provide a PluginExtensionMatcher, which is used to filter the plugin extensions to a desired subset.
getExtensionMatcher() - Method in class org.protege.editor.core.ui.preferences.PreferencesPanelPluginLoader
 
getExtensionMatcher() - Method in class org.protege.editor.core.ui.toolbar.MainToolBarActionPluginLoader
This method needs to be overriden to provide a PluginExtensionMatcher, which is used to filter the plugin extensions to a desired subset.
getExtensionMatcher() - Method in class org.protege.editor.core.ui.view.ViewComponentPluginLoader
 
getExtensionMatcher() - Method in class org.protege.editor.core.ui.view.ViewToolBarActionPluginLoader
This method needs to be overriden to provide a PluginExtensionMatcher, which is used to filter the plugin extensions to a desired subset.
getExtensionMatcher() - Method in class org.protege.editor.core.ui.workspace.WorkspaceTabPluginLoader
This method needs to be overriden to provide a PluginExtensionMatcher, which is used to filter the plugin extensions to a desired subset.
getExtensionMatcher() - Method in class org.protege.editor.owl.model.inference.ProtegeOWLReasonerFactoryPluginLoader
This method needs to be overriden to provide a PluginExtensionMatcher, which is used to filter the plugin extensions to a desired subset.
getExtensionMatcher() - Method in class org.protege.editor.owl.model.io.IOListenerPluginLoader
 
getExtensionMatcher() - Method in class org.protege.editor.owl.model.library.OntologyLibraryPluginLoader
This method needs to be overriden to provide a PluginExtensionMatcher, which is used to filter the plugin extensions to a desired subset.
getExtensionMatcher() - Method in class org.protege.editor.owl.ui.editor.OWLDescriptionEditorPluginLoader
 
getExtensionMatcher() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.MoveAxiomsKitPluginLoader
 
getExtensionMatcher() - Method in class org.protege.editor.owl.ui.renderer.OWLEntityColorProviderPluginLoader
 
getExtensionObject(IExtension, String) - Method in class org.protege.editor.core.plugin.PluginUtilities
 
getExtensionPointBundle(IExtension) - Method in class org.protege.editor.core.plugin.PluginUtilities
 
getExtensionRegistry() - Method in class org.protege.editor.core.plugin.PluginUtilities
 
getExtensions() - Method in class org.protege.editor.core.plugin.PluginExtensionFilter
Gets the Extensions that extend the specified extension point of the specified plugin and match the criteria specified by the PluginExtensionMatcher.
getFile() - Method in class org.protege.editor.core.ui.util.FilePathPanel
 
getFile(String) - Method in class org.protege.editor.owl.model.library.OntologyLibraryMemento
 
getFileName() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.exportwizard.SpecifyFileNamePage
Gets the file name that is set in the Wizard page UI.
getFillColor(Object) - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.renderer.OWLClsNodeRenderer
 
getFillColor(Node) - Method in class uk.ac.man.cs.mig.util.graph.renderer.impl.DefaultNodeRenderer
 
getFillers() - Method in class org.protege.editor.owl.model.util.ObjectSomeRestrictionFillerExtractor
Gets a set of descriptions that correspond to the fillers of existential restrictions that this visitor has visited.
getFilteredValues() - Method in class org.protege.editor.core.ui.util.CheckTable
 
getFilteredValues() - Method in class org.protege.editor.core.ui.util.CheckTableModel
 
getFindValue() - Method in class org.protege.editor.owl.ui.rename.RenameEntitiesPanel
 
getFinishButtonLabel() - Method in class uk.ac.man.cs.mig.util.wizard.Wizard
Gets the label displayed on the button that causes the next page to be shown, when the Wizard is on the last page.
getFirstPanelIDForKit() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.MoveAxiomsWizard
 
getFirstRendererLabel() - Method in class org.protege.editor.owl.ui.preferences.NewEntitiesPreferencesPanel
 
getFloat(String, float) - Method in class org.protege.editor.core.prefs.JavaBackedPreferencesImpl
 
getFloat(String, float) - Method in interface org.protege.editor.core.prefs.Preferences
 
getFocusComponent() - Method in class org.protege.editor.owl.ui.OWLEntityCreationPanel
 
getFocusComponent() - Method in class org.protege.editor.owl.ui.rename.RenameEntitiesPanel
 
getFocusedDescription() - Method in class org.protege.editor.owl.ui.OWLDescriptionComparator
 
getFocusedObject() - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
getFont() - Method in class org.protege.editor.owl.ui.renderer.OWLRendererPreferences
 
getFontName() - Method in class org.protege.editor.owl.ui.renderer.OWLRendererPreferences
 
getFontSize() - Method in class org.protege.editor.core.ui.workspace.Workspace
 
getFontSize() - Method in class org.protege.editor.owl.ui.renderer.OWLCellRenderer
 
getFontSize() - Method in class org.protege.editor.owl.ui.renderer.OWLRendererPreferences
 
getFormat() - Method in class org.protege.editor.owl.ui.action.ExportInferredOntologyWizard
 
getFormatDescription() - Method in class uk.ac.man.cs.mig.coode.owlviz.export.DotExportFormat
Gets a description of the export type, which is typically displayed in the user interface when selecting an export format.
getFormatDescription() - Method in interface uk.ac.man.cs.mig.util.graph.export.ExportFormat
Gets a description of the export type, which is typically displayed in the user interface when selecting an export format.
getFormatDescription() - Method in class uk.ac.man.cs.mig.util.graph.export.impl.JPEGExportFormat
Gets a description of the export type, which is typically displayed in the user interface when selecting an export format.
getFormatDescription() - Method in class uk.ac.man.cs.mig.util.graph.export.impl.PNGExportFormat
Gets a description of the export type, which is typically displayed in the user interface when selecting an export format.
getFormatDescription() - Method in class uk.ac.man.cs.mig.util.graph.export.impl.SVGExportFormat
Gets a description of the export type, which is typically displayed in the user interface when selecting an export format.
getFormatFileExtension() - Method in class uk.ac.man.cs.mig.coode.owlviz.export.DotExportFormat
Gets the file extension for the export type.
getFormatFileExtension() - Method in interface uk.ac.man.cs.mig.util.graph.export.ExportFormat
Gets the file extension for the export type.
getFormatFileExtension() - Method in class uk.ac.man.cs.mig.util.graph.export.impl.JPEGExportFormat
Gets the file extension for the export type.
getFormatFileExtension() - Method in class uk.ac.man.cs.mig.util.graph.export.impl.PNGExportFormat
Gets the file extension for the export type.
getFormatFileExtension() - Method in class uk.ac.man.cs.mig.util.graph.export.impl.SVGExportFormat
Gets the file extension for the export type.
getFormatName() - Method in class uk.ac.man.cs.mig.coode.owlviz.export.DotExportFormat
Gets the name of the export format.
getFormatName() - Method in interface uk.ac.man.cs.mig.util.graph.export.ExportFormat
Gets the name of the export format.
getFormatName() - Method in class uk.ac.man.cs.mig.util.graph.export.impl.JPEGExportFormat
Gets the name of the export format.
getFormatName() - Method in class uk.ac.man.cs.mig.util.graph.export.impl.PNGExportFormat
Gets the name of the export format.
getFormatName() - Method in class uk.ac.man.cs.mig.util.graph.export.impl.SVGExportFormat
Gets the name of the export format.
getFrame(Workspace) - Method in class org.protege.editor.core.ProtegeManager
This is a convenience method that can be used to obtain the top level frame for a Workspace.
getFrame(Workspace) - Method in class org.protege.editor.core.ui.workspace.WorkspaceManager
 
getFrame() - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSection
 
getFrame() - Method in class org.protege.editor.owl.ui.frame.ExplanationFrameSection
 
getFrame() - Method in interface org.protege.editor.owl.ui.frame.OWLFrameSection
 
getFrame() - Method in class org.protege.editor.owl.ui.framelist.ExplanationFrameList
 
getFrame() - Method in class org.protege.editor.owl.ui.framelist.OWLFrameList2
 
getFrameList() - Method in class org.protege.editor.owl.ui.framelist.OWLFrameListPopupMenuAction
 
getFrameSection() - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSectionRow
 
getFrameSection() - Method in class org.protege.editor.owl.ui.frame.ExplanationFrameSectionRow
 
getFrameSection() - Method in interface org.protege.editor.owl.ui.frame.OWLFrameSectionRow
Gets the frame section which this row belongs to.
getFrameSections() - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrame
Gets the sections within this frame.
getFrameSections() - Method in interface org.protege.editor.owl.ui.frame.OWLFrame
Gets the sections within this frame.
getGraph() - Method in interface uk.ac.man.cs.mig.util.graph.controller.GraphGenerator
Gets the Graph based upon the visible objects in the VisualisedObjectManager.
getGraph() - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultGraphGenerator
Gets the Graph based upon the visible objects in the VisualisedObjectManager.
getGraph() - Method in class uk.ac.man.cs.mig.util.graph.ui.GraphView
Gets the Graph that the view should currently display.
getGraphComponent() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizGraphPanel
 
getGraphComponents() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizView
 
getGraphComponents() - Method in interface uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizViewI
 
getGraphFactory() - Method in interface uk.ac.man.cs.mig.util.graph.controller.Controller
Gets the factory used to produce Graphs
getGraphFactory() - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultController
Gets the factory used to produce Graphs
getGraphFactory() - Method in class uk.ac.man.cs.mig.util.graph.ui.GraphComponent
 
getGraphGenerator() - Method in interface uk.ac.man.cs.mig.util.graph.controller.Controller
Returns the GraphGenerator which is responsible for creating and maintaining the Graph that represents the list of objects held by the VisualisedObject manager.
getGraphGenerator() - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultController
Returns the GraphGenerator which is responsible for creating and maintaining the Graph that represents the list of objects held by the VisualisedObject manager.
getGraphGeneratorListeners() - Method in interface uk.ac.man.cs.mig.util.graph.controller.GraphGenerator
Gets an Iterator that can be used to traverse the listeners.
getGraphGeneratorListeners() - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultGraphGenerator
Gets an Iterator that can be used to traverse the listeners.
getGraphLayoutEngine() - Method in interface uk.ac.man.cs.mig.util.graph.controller.Controller
Returns the GraphLayoutEngine, which is capable of sizing and positioning Nodes and Edges.
getGraphLayoutEngine() - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultController
Returns the GraphLayoutEngine, which is capable of sizing and positioning Nodes and Edges.
getGraphModel() - Method in interface uk.ac.man.cs.mig.util.graph.controller.Controller
Returns the GraphModel, which is an interface to the underlying data that is represented by the Graph.
getGraphModel() - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultController
Returns the GraphModel, which is an interface to the underlying data that is represented by the Graph.
getGraphModel() - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultVisualisedObjectManager
Gets the GraphModel that the visualised object manager is responsible for.
getGraphModel() - Method in interface uk.ac.man.cs.mig.util.graph.controller.VisualisedObjectManager
Gets the GraphModel that the visualised object manager is responsible for.
getGraphModel() - Method in class uk.ac.man.cs.mig.util.graph.ui.GraphComponent
 
getGraphSelectionModel() - Method in interface uk.ac.man.cs.mig.util.graph.controller.Controller
Returns the selection model that is responsible for managing user interaction in the form of Node and Edge selections.
getGraphSelectionModel() - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultController
Returns the selection model that is responsible for managing user interaction in the form of Node and Edge selections.
getGraphSelectionModel() - Method in class uk.ac.man.cs.mig.util.graph.ui.GraphComponent
 
getGraphView() - Method in interface uk.ac.man.cs.mig.util.graph.controller.Controller
Retrieves the GraphView currently attached to the Controller
getGraphView() - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultController
Retrieves the GraphView currently attached to the Controller
getGraphView() - Method in class uk.ac.man.cs.mig.util.graph.ui.GraphComponent
 
getGroup() - Method in interface org.protege.editor.core.ui.action.ToolBarActionPlugin
 
getGroup() - Method in class org.protege.editor.core.ui.action.ToolBarActionPluginJPFImpl
 
getGroup() - Method in interface org.protege.editor.core.ui.menu.MenuActionPlugin
Menu items can belong to groups.
getGroup() - Method in class org.protege.editor.core.ui.menu.MenuActionPluginJPFImpl
 
getGroupByNameSpace() - Static method in class uk.ac.man.cs.mig.coode.owlviz.ui.renderer.DotSubGraphOutputRenderer
 
getGroupIndex() - Method in interface org.protege.editor.core.ui.action.ToolBarActionPlugin
 
getGroupIndex() - Method in class org.protege.editor.core.ui.action.ToolBarActionPluginJPFImpl
 
getGroupIndex() - Method in interface org.protege.editor.core.ui.menu.MenuActionPlugin
Within a menu item group, items are sorted according to the group index.
getGroupIndex() - Method in class org.protege.editor.core.ui.menu.MenuActionPluginJPFImpl
 
getHandler() - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSectionRowObjectEditor
 
getHandler() - Method in interface org.protege.editor.owl.ui.frame.OWLFrameSectionRowObjectEditor
 
getHandler() - Method in class org.protege.editor.owl.ui.frame.OWLImportsDeclarationEditor
 
getHeadNode() - Method in interface uk.ac.man.cs.mig.util.graph.graph.Edge
Returns the node that the head of the head is connected to.
getHeadNode() - Method in class uk.ac.man.cs.mig.util.graph.graph.impl.DefaultEdge
Returns the node that the head of the head is connected to.
getHiddenAnnotationURIs() - Method in class org.protege.editor.owl.model.OWLWorkspace
 
getHiddenAnnotationURIs() - Static method in class org.protege.editor.owl.ui.preferences.AnnotationPreferences
 
getHierarchy() - Method in class org.protege.editor.owl.ui.hierarchy.creation.CreateClassHierarchyWizard
 
getHierarchy() - Method in class org.protege.editor.owl.ui.hierarchy.creation.TabIndentedHierarchyPanel
 
getHierarchyProvider() - Method in class org.protege.editor.owl.ui.selector.AbstractHierarchySelectorPanel
 
getHierarchyProvider() - Method in class org.protege.editor.owl.ui.view.AbstractOWLPropertyHierarchyViewComponent
 
getHierarchyProvider() - Method in class org.protege.editor.owl.ui.view.InferredObjectPropertyHierarchyViewComponent
 
getHierarchyProvider() - Method in class org.protege.editor.owl.ui.view.OWLDataPropertyHierarchyViewComponent
 
getHierarchyProvider() - Method in class org.protege.editor.owl.ui.view.OWLObjectPropertyHierarchyViewComponent
 
getHistoryManager() - Method in interface org.protege.editor.owl.model.OWLModelManager
Gets the change history manager.
getHistoryManager() - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
 
getHTMLOntologyList(Collection<OWLOntology>) - Method in class org.protege.editor.owl.ui.UIHelper
 
getIcon() - Method in interface org.protege.editor.core.ui.action.ProtegeActionPlugin
Gets the icon for this action.
getIcon() - Method in class org.protege.editor.core.ui.action.ProtegeActionPluginJPFImpl
Gets the icon for this action.
getIcon(String) - Static method in class org.protege.editor.core.ui.util.Icons
 
getIcon() - Method in class org.protege.editor.core.ui.workspace.CustomWorkspaceTabsManager.CustomTabPlugin
 
getIcon() - Method in class org.protege.editor.core.ui.workspace.WorkspaceTab
Gets this tabs icon.
getIcon() - Method in interface org.protege.editor.core.ui.workspace.WorkspaceTabPlugin
Gets the icon shown on the tab.
getIcon() - Method in class org.protege.editor.core.ui.workspace.WorkspaceTabPluginJPFImpl
 
getIcon(DLExpressivityChecker.Construct) - Static method in class org.protege.editor.owl.ui.metrics.ExpressivityIcons
 
getIcon(String) - Static method in class org.protege.editor.owl.ui.OWLIcons
 
getIcon(Object) - Method in class org.protege.editor.owl.ui.renderer.OWLCellRenderer
 
getIcon(OWLObject) - Method in interface org.protege.editor.owl.ui.renderer.OWLIconProvider
 
getIcon() - Method in class org.protege.editor.owl.ui.renderer.OWLIconProviderImpl
 
getIcon(OWLObject) - Method in class org.protege.editor.owl.ui.renderer.OWLIconProviderImpl
 
getIcon(String) - Static method in class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizIcons
Gets the ImageIcon with the specified name.
getIconObject(JList, Object, int, boolean, boolean) - Method in class org.protege.editor.owl.ui.framelist.OWLFrameListRenderer
 
getId() - Method in interface org.protege.editor.core.editorkit.EditorKit
Gets the EditorKit Id.
getId() - Method in interface org.protege.editor.core.editorkit.EditorKitFactory
Gets the identifier for this EditorKitFactory.
getId() - Method in class org.protege.editor.core.editorkit.EditorKitFactoryPlugin
 
getId() - Method in class org.protege.editor.core.editorkit.plugin.EditorKitHookPluginImpl
 
getId() - Method in class org.protege.editor.core.OntologyRepositoryFactoryPluginImpl
 
getId() - Method in interface org.protege.editor.core.plugin.ProtegePlugin
Gets the plugin Id.
getId() - Method in interface org.protege.editor.core.ui.action.ProtegeActionPlugin
Gets the plugin id.
getId() - Method in class org.protege.editor.core.ui.action.ProtegeActionPluginJPFImpl
Gets the plugin id.
getId() - Method in class org.protege.editor.core.ui.error.ErrorLog.ErrorLogEntry
 
getId() - Method in class org.protege.editor.core.ui.preferences.PreferencesPanelPluginJPFImpl
 
getId() - Method in class org.protege.editor.core.ui.view.View
Gets the ViewComponentPlugin Id.
getId() - Method in class org.protege.editor.core.ui.view.ViewComponentPluginAdapter
 
getId() - Method in class org.protege.editor.core.ui.view.ViewComponentPluginJPFImpl
 
getId() - Method in class org.protege.editor.core.ui.workspace.CustomWorkspaceTabsManager.CustomTabPlugin
 
getId() - Method in class org.protege.editor.core.ui.workspace.WorkspaceTab
 
getId() - Method in class org.protege.editor.core.ui.workspace.WorkspaceTabPluginJPFImpl
 
getId() - Method in class org.protege.editor.core.update.PluginInfo
 
getId() - Method in interface org.protege.editor.owl.model.inference.ProtegeOWLReasonerFactoryPlugin
Gets a String that represents the reasoner ID.
getId() - Method in class org.protege.editor.owl.model.inference.ProtegeOWLReasonerFactoryPluginJPFImpl
Gets a String that represents the reasoner ID.
getId() - Method in class org.protege.editor.owl.model.io.IOListenerPluginImpl
 
getId() - Method in class org.protege.editor.owl.model.library.OntologyLibraryFactoryPluginJPFImpl
Gets the plugin Id.
getId() - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
 
getId() - Method in class org.protege.editor.owl.OWLEditorKit
Gets the EditorKit Id.
getId() - Method in class org.protege.editor.owl.OWLEditorKitFactory
Gets the identifier for this EditorKitFactory.
getId() - Method in class org.protege.editor.owl.ui.editor.OWLDescriptionEditorPluginImpl
 
getID() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.byannotation.AnnotationSelectorPanel
 
getID() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.byprofile.ProfileSelectorPanel
 
getID() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.byreference.SelectSignaturePanel
 
getID() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.bytype.AxiomTypeSelectorPanel
 
getID() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.common.SignatureDependentSelectionPreviewPanel
 
getID() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.MoveAxiomsKit
 
getID() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.MoveAxiomsKitConfigurationPanel
 
getId() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.MoveAxiomsKitPluginImpl
 
getID() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.SelectAxiomsPanel
 
getId() - Method in class org.protege.editor.owl.ui.renderer.OWLEntityColorProviderPluginJPFImpl
 
getID() - Method in class org.protege.editor.owl.ui.selector.OWLEntitySelectorPanel
 
getIdentifier() - Method in class org.protege.editor.core.ui.wizard.WizardPanel
 
GetImage() - Method in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.SimpleCharStream
 
getImageOffset() - Method in class org.protege.editor.owl.ui.transfer.OWLObjectDragGestureListener
 
getImageOffset() - Method in class org.protege.editor.owl.ui.transfer.OWLObjectListDragGestureListener
 
getImageOffset() - Method in class org.protege.editor.owl.ui.transfer.OWLObjectTreeDragGestureListener
 
getImportVerifier() - Method in class org.protege.editor.owl.ui.ontology.imports.wizard.AbstractImportSourcePage
 
getImportVerifier() - Method in class org.protege.editor.owl.ui.ontology.imports.wizard.LibraryPage
 
getImportVerifier() - Method in class org.protege.editor.owl.ui.ontology.imports.wizard.LoadedOntologyPage
 
getImportVerifier() - Method in class org.protege.editor.owl.ui.ontology.imports.wizard.LocalFilePage
 
getImportVerifier() - Method in class org.protege.editor.owl.ui.ontology.imports.wizard.OntologyImportWizard
 
getImportVerifier() - Method in class org.protege.editor.owl.ui.ontology.imports.wizard.URLPage
 
getInconsistentClasses() - Method in class org.protege.editor.owl.model.inference.NoOpReasoner
 
getIndent(OWLAxiom) - Method in class org.protege.editor.owl.ui.frame.ExplanationFrameSection
 
getIndent() - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererDLSyntax
 
getIndent() - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
getIndex() - Method in class org.protege.editor.core.ui.workspace.CustomWorkspaceTabsManager.CustomTabPlugin
 
getIndex() - Method in interface org.protege.editor.core.ui.workspace.WorkspaceTabPlugin
Gets the default tab index.
getIndex() - Method in class org.protege.editor.core.ui.workspace.WorkspaceTabPluginJPFImpl
 
getIndex() - Method in interface org.protege.editor.owl.ui.editor.OWLDescriptionEditorPlugin
 
getIndex() - Method in class org.protege.editor.owl.ui.editor.OWLDescriptionEditorPluginImpl
 
getIndex(TreeNode) - Method in class org.protege.editor.owl.ui.tree.OWLObjectTreeNode
 
getIndividual() - Method in class org.protege.editor.owl.ui.frame.OWLObjectPropertyIndividualPair
 
getIndividuals(OWLDescription, boolean) - Method in class org.protege.editor.owl.model.inference.NoOpReasoner
 
getInferredAxiomGenerators() - Method in class org.protege.editor.owl.ui.action.ExportInferredOntologyPanel
 
getInferredAxiomGenerators() - Method in class org.protege.editor.owl.ui.action.ExportInferredOntologyWizard
 
getInferredAxiomGenerators() - Method in class org.protege.editor.owl.ui.action.ExportInferredOntologyWizardSelectAxiomsPanel
 
getInferredDomains() - Method in class org.protege.editor.owl.ui.frame.OWLDataPropertyDomainFrameSection
 
getInferredDomains() - Method in class org.protege.editor.owl.ui.frame.OWLObjectPropertyDomainFrameSection
 
getInferredDomains() - Method in class org.protege.editor.owl.ui.frame.property.AbstractPropertyDomainFrameSection
 
getInferredGraphComponent() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizView
 
getInferredOWLClassHierarchyProvider() - Method in interface org.protege.editor.owl.model.hierarchy.OWLHierarchyManager
 
getInferredOWLClassHierarchyProvider() - Method in class org.protege.editor.owl.model.hierarchy.OWLHierarchyManagerImpl
 
getInferredOWLClassHierarchyProvider() - Method in interface org.protege.editor.owl.model.OWLModelManager
Deprecated. use getOWLHierarchyManager() instead
getInferredOWLClassHierarchyProvider() - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
 
getInferredOWLObjectPropertyHierarchyProvider() - Method in interface org.protege.editor.owl.model.hierarchy.OWLHierarchyManager
 
getInferredOWLObjectPropertyHierarchyProvider() - Method in class org.protege.editor.owl.model.hierarchy.OWLHierarchyManagerImpl
 
getInitialCongigFileURL() - Method in class org.protege.editor.core.ui.view.ViewsPaneMemento
 
getInlineEditorComponent() - Method in class org.protege.editor.owl.ui.frame.OWLAnnotationEditor
 
getInlineEditorComponent() - Method in class org.protege.editor.owl.ui.frame.OWLGeneralAxiomEditor
 
getInlineEditorComponent() - Method in class org.protege.editor.owl.ui.frame.OWLImportsDeclarationEditor
 
getInlineEditorComponent() - Method in class org.protege.editor.owl.ui.frame.OWLIndividualEditor
 
getInlineEditorComponent() - Method in class org.protege.editor.owl.ui.frame.OWLIndividualSetEditor
 
getInputStream(URI) - Static method in class org.protege.editor.owl.model.util.URIUtilities
 
getInstalledReasonerFactories() - Method in interface org.protege.editor.owl.model.inference.OWLReasonerManager
Gets the installed reasoner plugins.
getInstalledReasonerFactories() - Method in class org.protege.editor.owl.model.inference.OWLReasonerManagerImpl
 
getInstance() - Static method in class org.protege.editor.core.BookMarkedURIManager
 
getInstance() - Static method in class org.protege.editor.core.editorkit.RecentEditorKitManager
 
getInstance() - Static method in class org.protege.editor.core.platform.apple.ProtegeAppleApplication
 
getInstance() - Static method in class org.protege.editor.core.plugin.PluginUtilities
Gets the one and only instance of PluginUtilities.
getInstance() - Static method in class org.protege.editor.core.prefs.PreferencesManager
Gets the one an only instance of the PreferencesManager
getInstance() - Static method in class org.protege.editor.core.ProtegeManager
Gets hold of the one and only ProtegeManager
getInstance() - Static method in class org.protege.editor.core.ProtegeProperties
 
getInstance() - Static method in class org.protege.editor.core.update.PluginManager
 
getInstance(OWLModelManager) - Static method in class org.protege.editor.owl.model.cache.OWLExpressionUserCache
 
getInstance() - Static method in class org.protege.editor.owl.model.find.EntityFinderPreferences
 
getInstance() - Static method in class org.protege.editor.owl.model.XMLWriterPrefs
 
getInstance() - Static method in class org.protege.editor.owl.ProtegeOWLProperties
 
getInstance() - Static method in class org.protege.editor.owl.ui.clsdescriptioneditor.ExpressionEditorPreferences
 
getInstance() - Static method in class org.protege.editor.owl.ui.ontology.OntologyPreferences
 
getInstance() - Static method in class org.protege.editor.owl.ui.prefix.PrefixMapperManager
 
getInstance() - Static method in class org.protege.editor.owl.ui.renderer.OWLRendererPreferences
 
getInstance() - Static method in class org.protege.editor.owl.ui.tree.OWLTreePreferences
 
getInstance() - Static method in class org.protege.editor.owl.ui.usage.UsagePreferences
 
getInstance() - Static method in class org.protege.editor.owl.ui.view.ViewClipboard
 
getInstance() - Static method in class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizPreferences
 
getInstance(String) - Static method in class uk.ac.man.cs.mig.coode.owlviz.ui.popup.PopupManager
 
getInstance() - Static method in class uk.ac.man.cs.mig.util.graph.export.ExportFormatManager
Gets the one and only instance of the ExportFormatManager.
getInstance() - Static method in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.DotLayoutEngineProperties
 
getInstructions() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.byannotation.AnnotationSelectorPanel
 
getInstructions() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.byprofile.ProfileSelectorPanel
 
getInstructions() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.byreference.SelectSignaturePanel
 
getInstructions() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.bytype.AxiomTypeSelectorPanel
 
getInstructions() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.common.SignatureDependentSelectionPreviewPanel
 
getInstructions() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.MoveAxiomsKitConfigurationPanel
 
getInstructions() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.SelectAxiomsPanel
 
getInt(String, int) - Method in class org.protege.editor.core.prefs.JavaBackedPreferencesImpl
 
getInt(String, int) - Method in interface org.protege.editor.core.prefs.Preferences
 
getIntMetric() - Method in class org.protege.editor.owl.ui.metrics.AbstractIntegerMetric
 
getIntMetric() - Method in class org.protege.editor.owl.ui.metrics.ClassCountMetric
 
getIntMetric() - Method in class org.protege.editor.owl.ui.metrics.DataPropertyCountMetric
 
getIntMetric() - Method in class org.protege.editor.owl.ui.metrics.ImportsClosureClassCountMetric
 
getIntMetric() - Method in class org.protege.editor.owl.ui.metrics.ImportsClosureDataPropertyCountMetric
 
getIntMetric() - Method in class org.protege.editor.owl.ui.metrics.ImportsClosureIndividualCountMetric
 
getIntMetric() - Method in class org.protege.editor.owl.ui.metrics.ImportsClosureObjectPropertyCountMetric
 
getIntMetric() - Method in class org.protege.editor.owl.ui.metrics.IndividualCountMetric
 
getIntMetric() - Method in class org.protege.editor.owl.ui.metrics.ObjectPropertyCount
 
getIntProperty(String, int) - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.options.OWLVizProperties
Deprecated. Gets a value for an integer property.
getInverseProperties(OWLObjectProperty) - Method in class org.protege.editor.owl.model.inference.NoOpReasoner
 
getItemBackgroundColor(MListItem) - Method in class org.protege.editor.core.ui.list.MList
 
getItemBackgroundColor(MListItem) - Method in class org.protege.editor.owl.ui.framelist.OWLFrameList2
 
getKey() - Method in enum org.protege.editor.owl.ui.usage.UsageFilter
 
getKeyWordColorMap() - Method in class org.protege.editor.owl.model.OWLWorkspace
 
getKnownDatatypes(Set<OWLOntology>) - Method in class org.protege.editor.owl.model.util.OWLDataTypeUtils
 
getLabel() - Method in class org.protege.editor.core.editorkit.EditorKitDescriptor
Gets a human readable label that can be used in user interfaces etc.
getLabel() - Method in class org.protege.editor.core.editorkit.EditorKitFactoryPlugin
Gets the EditorKitFactory label.
getLabel() - Method in class org.protege.editor.core.ui.preferences.node.AbstractPreferenceNode
 
getLabel() - Method in interface org.protege.editor.core.ui.preferences.node.PreferenceNode
 
getLabel() - Method in class org.protege.editor.core.ui.preferences.node.PreferenceNodeGroup
 
getLabel() - Method in class org.protege.editor.core.ui.preferences.PreferencesPanel
 
getLabel() - Method in interface org.protege.editor.core.ui.preferences.PreferencesPanelPlugin
Gets the label.
getLabel() - Method in class org.protege.editor.core.ui.preferences.PreferencesPanelPluginJPFImpl
 
getLabel() - Method in interface org.protege.editor.core.ui.view.ViewComponentPlugin
 
getLabel() - Method in class org.protege.editor.core.ui.view.ViewComponentPluginJPFImpl
 
getLabel() - Method in class org.protege.editor.core.ui.workspace.CustomWorkspaceTabsManager.CustomTabPlugin
 
getLabel() - Method in class org.protege.editor.core.ui.workspace.WorkspaceTab
Gets this tabs label.
getLabel() - Method in interface org.protege.editor.core.ui.workspace.WorkspaceTabPlugin
Gets the label that is shown on the tab
getLabel() - Method in class org.protege.editor.core.ui.workspace.WorkspaceTabPluginJPFImpl
 
getLabel() - Method in class org.protege.editor.core.update.PluginInfo
 
getLabel() - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSection
 
getLabel() - Method in interface org.protege.editor.owl.ui.frame.OWLFrameSection
 
getLabel() - Method in class org.protege.editor.owl.ui.frame.OWLImportsDeclarationFrameSection
 
getLabel(Node) - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.renderer.OWLClsNodeLabelRenderer
Gets the label for the specified Node.
getLabel(Node) - Method in class uk.ac.man.cs.mig.util.graph.renderer.impl.DefaultNodeLabelRenderer
Gets the label for the specified Node.
getLabel(Node) - Method in interface uk.ac.man.cs.mig.util.graph.renderer.NodeLabelRenderer
Gets the label for the specified Node.
getLabelDescriptorClass() - Static method in class org.protege.editor.owl.model.entity.EntityCreationPreferences
 
getLabelPosition() - Method in interface uk.ac.man.cs.mig.util.graph.graph.Edge
Retrieves the position of the Edge's label.
getLabelPosition() - Method in class uk.ac.man.cs.mig.util.graph.graph.impl.DefaultEdge
Retrieves the position of the Edge's label.
getLanguage() - Method in class org.protege.editor.owl.model.entity.CustomLabelDescriptor
 
getLanguage() - Method in interface org.protege.editor.owl.model.entity.LabelDescriptor
 
getLanguage() - Method in class org.protege.editor.owl.model.entity.MatchRendererLabelDescriptor
 
getLanguageSelector() - Method in class org.protege.editor.owl.ui.UIHelper
 
getLastMouseDownPoint() - Method in class org.protege.editor.owl.ui.framelist.OWLFrameList2
 
getLastPanelIDForKit() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.MoveAxiomsWizard
 
getLastSelectedAxiom() - Method in interface org.protege.editor.owl.model.selection.OWLSelectionModel
Deprecated. use getLastSelectedAxiomInstance(OWLAxiomInstance)
getLastSelectedAxiom() - Method in class org.protege.editor.owl.model.selection.OWLSelectionModelImpl
 
getLastSelectedAxiomInstance() - Method in interface org.protege.editor.owl.model.selection.OWLSelectionModel
Instances of an axiom wrt the containing ontology
getLastSelectedAxiomInstance() - Method in class org.protege.editor.owl.model.selection.OWLSelectionModelImpl
 
getLastSelectedClass() - Method in interface org.protege.editor.owl.model.selection.OWLSelectionModel
Gets the most recently selected class.
getLastSelectedClass() - Method in class org.protege.editor.owl.model.selection.OWLSelectionModelImpl
 
getLastSelectedDataProperty() - Method in interface org.protege.editor.owl.model.selection.OWLSelectionModel
Gets the most recently selected property
getLastSelectedDataProperty() - Method in class org.protege.editor.owl.model.selection.OWLSelectionModelImpl
 
getLastSelectedIndividual() - Method in interface org.protege.editor.owl.model.selection.OWLSelectionModel
Gets the most recently selected individual.
getLastSelectedIndividual() - Method in class org.protege.editor.owl.model.selection.OWLSelectionModelImpl
 
getLastSelectedObjectProperty() - Method in interface org.protege.editor.owl.model.selection.OWLSelectionModel
Gets the most recently selected property
getLastSelectedObjectProperty() - Method in class org.protege.editor.owl.model.selection.OWLSelectionModelImpl
 
getLayoutAlignmentX(Container) - Method in class org.protege.editor.core.ui.preferences.PreferencesPanelLayoutManager
 
getLayoutAlignmentY(Container) - Method in class org.protege.editor.core.ui.preferences.PreferencesPanelLayoutManager
 
getLayoutDirection() - Method in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.DotGraphLayoutEngine
Gets the layout direction.
getLayoutDirection() - Method in interface uk.ac.man.cs.mig.util.graph.layout.GraphLayoutEngine
Gets the layout direction.
getLayoutDirection() - Method in class uk.ac.man.cs.mig.util.graph.layout.impl.DefaultGraphLayoutEngine
Gets the layout direction.
getLayoutPreferencesKey() - Method in class org.protege.editor.core.ui.view.ViewsPane
Gets the layout preferences key for this view panel
getLeftNode() - Method in class org.protege.editor.owl.model.description.AbstractQueryNode
 
getLeftNode() - Method in class org.protege.editor.owl.model.description.OWLDescriptionLeafNode
 
getLeftNode() - Method in interface org.protege.editor.owl.model.description.OWLDescriptionNode
 
getLibraries() - Method in class org.protege.editor.owl.model.library.OntologyLibraryManager
 
getLibrary(URI) - Method in class org.protege.editor.owl.model.library.OntologyLibraryManager
 
getLibraryTypeId() - Method in class org.protege.editor.owl.model.library.OntologyLibraryMemento
 
getLicense() - Method in class org.protege.editor.core.update.PluginInfo
 
getLine() - Method in class org.protege.editor.core.ui.error.ErrorExplainer.ParseErrorExplanation
 
getLine() - Method in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.SimpleCharStream
Deprecated.  
getLineColor(Object) - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.renderer.OWLClsNodeRenderer
 
getLineColor(Node) - Method in class uk.ac.man.cs.mig.util.graph.renderer.impl.DefaultNodeRenderer
 
getLineStroke() - Method in class uk.ac.man.cs.mig.util.graph.renderer.impl.DefaultNodeRenderer
 
getLinkedObject() - Method in class org.coode.dlquery.ResultsList
 
getLinkedObject() - Method in class org.protege.editor.owl.ui.framelist.OWLFrameList2
 
getLinkedObject() - Method in class org.protege.editor.owl.ui.list.OWLLinkedObjectList
 
getLinkedObject() - Method in interface org.protege.editor.owl.ui.renderer.LinkedObjectComponent
 
getLinkedObject() - Method in class org.protege.editor.owl.ui.renderer.LinkedObjectComponentMediator
 
getLinkedObject() - Method in class org.protege.editor.owl.ui.table.BasicLinkedOWLObjectTable
 
getLinkedObject() - Method in class org.protege.editor.owl.ui.tree.OWLLinkedObjectTree
 
getList() - Method in class org.protege.editor.owl.ui.OWLIndividualListComponent
 
getListCellRendererComponent(JList, Object, int, boolean, boolean) - Method in class org.coode.dlquery.DLQueryListCellRenderer
 
getListCellRendererComponent(JList, Object, int, boolean, boolean) - Method in class org.protege.editor.core.ui.list.MList.MListCellRenderer
 
getListCellRendererComponent(JList, Object, int, boolean, boolean) - Method in class org.protege.editor.owl.ui.framelist.OWLFrameListRenderer
Return a component that has been configured to display the specified value.
getListCellRendererComponent(JList, Object, int, boolean, boolean) - Method in class org.protege.editor.owl.ui.renderer.OWLAnnotationCellRenderer
 
getListCellRendererComponent(JList, Object, int, boolean, boolean) - Method in class org.protege.editor.owl.ui.renderer.OWLCellRenderer
 
getListCellRendererComponent(JList, Object, int, boolean, boolean) - Method in class org.protege.editor.owl.ui.renderer.OWLCellRendererSimple
 
getListCellRendererComponent(JList, Object, int, boolean, boolean) - Method in class org.protege.editor.owl.ui.renderer.OWLOntologyCellRenderer
 
getListeners() - Method in interface uk.ac.man.cs.mig.util.graph.controller.GraphSelectionModel
Retrieves an Iterator that can be used to traverse the listeners.
getListeners() - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultGraphSelectionModel
Retrieves an Iterator that can be used to traverse the listeners.
getListeners() - Method in interface uk.ac.man.cs.mig.util.graph.model.GraphModel
Gets an Iterator that can be used to traverse and remove listeners.
getListeners() - Method in class uk.ac.man.cs.mig.util.graph.model.impl.AbstractGraphModel
Gets an Iterator that can be used to traverse and remove listeners.
getListItemButtons(MListItem) - Method in class org.protege.editor.core.ui.list.MList
 
getListItems() - Method in class org.protege.editor.core.ui.list.RemovableObjectList
 
getLoadedOntologies() - Method in class org.protege.editor.owl.model.inference.NoOpReasoner
 
getLocalName(URI) - Method in class org.protege.editor.owl.model.namespace.NamespaceManagerImpl
 
getLocation() - Method in interface org.protege.editor.core.OntologyRepository
Gets a description of the location of the repository
getLocation() - Method in class org.protege.editor.owl.model.repository.ManchesterRepository
 
getLocationURI() - Method in class org.protege.editor.owl.ui.ontology.wizard.create.CreateOntologyWizard
 
getLocationURI() - Method in class org.protege.editor.owl.ui.ontology.wizard.create.PhysicalLocationPanel
 
getLoggedChanges() - Method in interface org.protege.editor.owl.model.history.HistoryManager
 
getLoggedChanges() - Method in class org.protege.editor.owl.model.history.HistoryManagerImpl
 
getLong(String, long) - Method in class org.protege.editor.core.prefs.JavaBackedPreferencesImpl
 
getLong(String, long) - Method in interface org.protege.editor.core.prefs.Preferences
 
getLoop(X) - Method in class org.protege.editor.owl.model.hierarchy.roots.Path
 
getLowestOntologiesToContainReference(OWLEntity) - Method in class org.protege.editor.owl.model.refactor.ontology.OntologyImportsWalker
 
getManager() - Static method in class org.protege.editor.core.OntologyRepositoryManager
 
getManager() - Method in class org.protege.editor.owl.model.hierarchy.AbstractOWLObjectHierarchyProvider
 
getManager() - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrame
 
getManipulatableObjects() - Method in class org.protege.editor.owl.ui.frame.AxiomListFrameSectionRow
 
getManipulatableObjects() - Method in class org.protege.editor.owl.ui.frame.ExplanationFrameSectionRow
 
getManipulatableObjects() - Method in class org.protege.editor.owl.ui.frame.InferredAxiomsFrameSectionRow
 
getManipulatableObjects() - Method in class org.protege.editor.owl.ui.frame.InheritedAnonymousClassesFrameSectionRow
 
getManipulatableObjects() - Method in class org.protege.editor.owl.ui.frame.OWLAnnotationsFrameSectionRow
Gets a list of objects contained in this row.
getManipulatableObjects() - Method in class org.protege.editor.owl.ui.frame.OWLAxiomAnnotationsFrameSectionRow
 
getManipulatableObjects() - Method in class org.protege.editor.owl.ui.frame.OWLClassAssertionAxiomIndividualSectionRow
Gets a list of objects contained in this row.
getManipulatableObjects() - Method in class org.protege.editor.owl.ui.frame.OWLClassAssertionAxiomTypeFrameSectionRow
Gets a list of objects contained in this row.
getManipulatableObjects() - Method in class org.protege.editor.owl.ui.frame.OWLDataPropertyAssertionAxiomFrameSectionRow
Gets a list of objects contained in this row.
getManipulatableObjects() - Method in class org.protege.editor.owl.ui.frame.OWLDataPropertyRangeFrameSectionRow
 
getManipulatableObjects() - Method in class org.protege.editor.owl.ui.frame.OWLDifferentIndividualAxiomFrameSectionRow
Gets a list of objects contained in this row.
getManipulatableObjects() - Method in class org.protege.editor.owl.ui.frame.OWLDisjointClassesAxiomFrameSectionRow
Gets a list of objects contained in this row.
getManipulatableObjects() - Method in class org.protege.editor.owl.ui.frame.OWLDisjointDataPropertiesFrameSectionRow
 
getManipulatableObjects() - Method in class org.protege.editor.owl.ui.frame.OWLDisjointObjectPropertiesAxiomFrameSectionRow
Gets a list of objects contained in this row.
getManipulatableObjects() - Method in class org.protege.editor.owl.ui.frame.OWLEquivalentClassesAxiomFrameSectionRow
Gets a list of objects contained in this row.
getManipulatableObjects() - Method in class org.protege.editor.owl.ui.frame.OWLEquivalentDataPropertiesFrameSectionRow
 
getManipulatableObjects() - Method in class org.protege.editor.owl.ui.frame.OWLEquivalentObjectPropertiesAxiomFrameSectionRow
Gets a list of objects contained in this row.
getManipulatableObjects() - Method in interface org.protege.editor.owl.ui.frame.OWLFrameSectionRow
Gets a list of objects contained in this row.
getManipulatableObjects() - Method in class org.protege.editor.owl.ui.frame.OWLGeneralClassAxiomFrameSectionRow
 
getManipulatableObjects() - Method in class org.protege.editor.owl.ui.frame.OWLImportsDeclarationAxiomFrameSectionRow
Gets a list of objects contained in this row.
getManipulatableObjects() - Method in class org.protege.editor.owl.ui.frame.OWLInverseObjectPropertiesAxiomFrameSectionRow
Gets a list of objects contained in this row.
getManipulatableObjects() - Method in class org.protege.editor.owl.ui.frame.OWLNegativeDataPropertyAssertionFrameSectionRow
Gets a list of objects contained in this row.
getManipulatableObjects() - Method in class org.protege.editor.owl.ui.frame.OWLNegativeObjectPropertyAssertionFrameSectionRow
Gets a list of objects contained in this row.
getManipulatableObjects() - Method in class org.protege.editor.owl.ui.frame.OWLObjectPropertyAssertionAxiomFrameSectionRow
Gets a list of objects contained in this row.
getManipulatableObjects() - Method in class org.protege.editor.owl.ui.frame.OWLObjectPropertyRangeFrameSectionRow
Gets a list of objects contained in this row.
getManipulatableObjects() - Method in class org.protege.editor.owl.ui.frame.OWLOntologyAnnotationAxiomFrameSectionRow
Gets a list of objects contained in this row.
getManipulatableObjects() - Method in class org.protege.editor.owl.ui.frame.OWLPropertyChainAxiomFrameSectionRow
Gets a list of objects contained in this row.
getManipulatableObjects() - Method in class org.protege.editor.owl.ui.frame.OWLSameIndividualsAxiomFrameSectionRow
Gets a list of objects contained in this row.
getManipulatableObjects() - Method in class org.protege.editor.owl.ui.frame.OWLSubClassAxiomFrameSectionRow
Gets a list of objects contained in this row.
getManipulatableObjects() - Method in class org.protege.editor.owl.ui.frame.OWLSubDataPropertyAxiomSuperPropertyFrameSectionRow
 
getManipulatableObjects() - Method in class org.protege.editor.owl.ui.frame.OWLSubObjectPropertyAxiomSuperPropertyFrameSectionRow
Gets a list of objects contained in this row.
getManipulatableObjects() - Method in class org.protege.editor.owl.ui.frame.property.AbstractPropertyDomainFrameSectionRow
 
getManipulatableObjects() - Method in class org.protege.editor.owl.ui.frame.SWRLRuleFrameSectionRow
 
getMap() - Method in class org.protege.editor.owl.model.library.OntologyLibraryMemento
 
getMapper() - Method in class org.protege.editor.owl.ui.prefix.PrefixMapperManager
 
getMatches(String, boolean, boolean, boolean, boolean, boolean) - Method in interface org.protege.editor.owl.ui.clsdescriptioneditor.AutoCompleterMatcher
 
getMatches(String, boolean, boolean, boolean, boolean, boolean) - Method in class org.protege.editor.owl.ui.clsdescriptioneditor.AutoCompleterMatcherImpl
 
getMatchingOWLClasses(String) - Method in interface org.protege.editor.owl.model.find.EntityFinder
 
getMatchingOWLClasses(String, boolean) - Method in interface org.protege.editor.owl.model.find.EntityFinder
 
getMatchingOWLClasses(String) - Method in class org.protege.editor.owl.model.find.EntityFinderImpl
 
getMatchingOWLClasses(String, boolean) - Method in class org.protege.editor.owl.model.find.EntityFinderImpl
 
getMatchingOWLClasses(String) - Method in interface org.protege.editor.owl.model.OWLModelManager
Deprecated. use getEntityFinder().getMatchingOWLClasses()
getMatchingOWLClasses(String) - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
 
getMatchingOWLDataProperties(String) - Method in interface org.protege.editor.owl.model.find.EntityFinder
 
getMatchingOWLDataProperties(String, boolean) - Method in interface org.protege.editor.owl.model.find.EntityFinder
 
getMatchingOWLDataProperties(String) - Method in class org.protege.editor.owl.model.find.EntityFinderImpl
 
getMatchingOWLDataProperties(String, boolean) - Method in class org.protege.editor.owl.model.find.EntityFinderImpl
 
getMatchingOWLDataProperties(String) - Method in interface org.protege.editor.owl.model.OWLModelManager
Deprecated. use getEntityFinder().getMatchingOWLDataProperties()
getMatchingOWLDataProperties(String) - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
 
getMatchingOWLDataTypes(String) - Method in interface org.protege.editor.owl.model.find.EntityFinder
 
getMatchingOWLDataTypes(String, boolean) - Method in interface org.protege.editor.owl.model.find.EntityFinder
 
getMatchingOWLDataTypes(String) - Method in class org.protege.editor.owl.model.find.EntityFinderImpl
 
getMatchingOWLDataTypes(String, boolean) - Method in class org.protege.editor.owl.model.find.EntityFinderImpl
 
getMatchingOWLDataTypes(String) - Method in interface org.protege.editor.owl.model.OWLModelManager
Deprecated. use getEntityFinder().getMatchingOWLDataTypes()
getMatchingOWLDataTypes(String) - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
 
getMatchingOWLIndividuals(String) - Method in interface org.protege.editor.owl.model.find.EntityFinder
 
getMatchingOWLIndividuals(String, boolean) - Method in interface org.protege.editor.owl.model.find.EntityFinder
 
getMatchingOWLIndividuals(String) - Method in class org.protege.editor.owl.model.find.EntityFinderImpl
 
getMatchingOWLIndividuals(String, boolean) - Method in class org.protege.editor.owl.model.find.EntityFinderImpl
 
getMatchingOWLIndividuals(String) - Method in interface org.protege.editor.owl.model.OWLModelManager
Deprecated. use getEntityFinder().getMatchingOWLIndividuals()
getMatchingOWLIndividuals(String) - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
 
getMatchingOWLObjectProperties(String) - Method in interface org.protege.editor.owl.model.find.EntityFinder
 
getMatchingOWLObjectProperties(String, boolean) - Method in interface org.protege.editor.owl.model.find.EntityFinder
 
getMatchingOWLObjectProperties(String) - Method in class org.protege.editor.owl.model.find.EntityFinderImpl
 
getMatchingOWLObjectProperties(String, boolean) - Method in class org.protege.editor.owl.model.find.EntityFinderImpl
 
getMatchingOWLObjectProperties(String) - Method in interface org.protege.editor.owl.model.OWLModelManager
Deprecated. use getEntityFinder().getMatchingOWLObjectProperties()
getMatchingOWLObjectProperties(String) - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
 
getMaximumDividerLocation() - Method in class org.protege.editor.core.ui.split.ViewSplitPane
 
getMaximumDividerLocation(JSplitPane) - Method in class org.protege.editor.core.ui.split.ViewSplitPaneUI
Gets the maximum location of the divider.
getMaximumSize() - Method in class uk.ac.man.cs.mig.util.graph.ui.GraphComponent
 
getMaximumSize() - Method in class uk.ac.man.cs.mig.util.graph.ui.impl.DefaultGraphView
If the maximum size has been set to a non-null value just returns it.
getMaximumZoomLevel() - Method in class uk.ac.man.cs.mig.util.graph.ui.impl.DefaultGraphView
Gets the maximum allowed zoom level.
getMaximumZoomLevel() - Method in interface uk.ac.man.cs.mig.util.graph.ui.Zoomable
Gets the maximum allowed zoom level.
getMaxKeyWord() - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererDLSyntax
 
getMaxKeyWord() - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
getMemento() - Method in class org.protege.editor.owl.model.library.folder.FolderOntologyLibrary
 
getMemento() - Method in interface org.protege.editor.owl.model.library.OntologyLibrary
Gets a memento that can be used to persist the library.
getMenu(String) - Method in class org.protege.editor.core.ui.workspace.WorkspaceFrame
 
getMenuItemSelectedBackground() - Method in class org.protege.editor.core.ui.util.ProtegePlasticTheme
 
getMenuItemSelectedForeground() - Method in class org.protege.editor.core.ui.util.ProtegePlasticTheme
 
getMenuSelectedBackground() - Method in class org.protege.editor.core.ui.util.ProtegePlasticTheme
 
getMenuSelectedForeground() - Method in class org.protege.editor.core.ui.util.ProtegePlasticTheme
 
getMessage() - Method in class org.protege.editor.core.ui.error.ErrorExplainer.ErrorExplanation
 
getMessage() - Method in exception org.protege.editor.core.ui.wizard.WizardPanelNotFoundException
 
getMessage() - Method in exception uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.ParseException
This method has the standard behavior when this object has been created using the standard constructors.
getMessage() - Method in error uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.TokenMgrError
You can also modify the body of this method to customize your error messages.
getMetaData(Object) - Method in interface org.protege.editor.core.OntologyRepositoryEntry
Gets associated metadata.
getMetaDataKeys() - Method in interface org.protege.editor.core.OntologyRepository
 
getMetaDataKeys() - Method in class org.protege.editor.owl.model.repository.ManchesterRepository
 
getMetric() - Method in class org.protege.editor.owl.ui.metrics.AbstractIntegerMetric
 
getMetric() - Method in class org.protege.editor.owl.ui.metrics.Metric
 
getMinimumDividerLocation() - Method in class org.protege.editor.core.ui.split.ViewSplitPane
 
getMinimumDividerLocation(JSplitPane) - Method in class org.protege.editor.core.ui.split.ViewSplitPaneUI
Gets the minimum location of the divider.
getMinimumSize() - Method in class org.protege.editor.core.ui.view.ViewContainer
If the minimum size has been set to a non-null value just returns it.
getMinimumSize() - Method in class uk.ac.man.cs.mig.util.graph.ui.GraphComponent
 
getMinimumSize() - Method in class uk.ac.man.cs.mig.util.graph.ui.impl.DefaultGraphView
If the minimum size has been set to a non-null value just returns it.
getMinimumZoomLevel() - Method in class uk.ac.man.cs.mig.util.graph.ui.impl.DefaultGraphView
Gets the minimum allowed zoom level.
getMinimumZoomLevel() - Method in interface uk.ac.man.cs.mig.util.graph.ui.Zoomable
Gets the minimum allowed zoom level.
getMinKeyWord() - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererDLSyntax
 
getMinKeyWord() - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
getModel() - Method in class org.protege.editor.core.ui.util.CheckTable
 
getModel() - Method in class org.protege.editor.core.ui.wizard.Wizard
Returns the current model of the wizard dialog.
getModel() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.MoveAxiomsKitConfigurationPanel
 
getModelManager() - Method in interface org.protege.editor.core.editorkit.EditorKit
Gets the "model" that the clsdescriptioneditor kit edits.
getModelManager() - Method in class org.protege.editor.core.ui.preferences.PreferencesPanel
 
getModelManager() - Method in class org.protege.editor.core.ui.wizard.AbstractWizardPanel
 
getModelManager() - Method in class org.protege.editor.owl.OWLEditorKit
Gets the "model" that the clsdescriptioneditor kit edits.
getMostSpecific(Set<OWLDescription>) - Method in class org.protege.editor.owl.model.inference.OWLReasonerUtils
 
getMostSpecificSets(Set<Set<OWLDescription>>) - Method in class org.protege.editor.owl.model.inference.OWLReasonerUtils
 
getMouseCellLocation() - Method in class org.coode.dlquery.ResultsList
 
getMouseCellLocation() - Method in class org.protege.editor.owl.ui.framelist.OWLFrameList2
Gets the location of the mouse relative to the rendering cell that it is over.
getMouseCellLocation() - Method in class org.protege.editor.owl.ui.list.OWLLinkedObjectList
Gets the location of the mouse relative to the rendering cell that it is over.
getMouseCellLocation() - Method in interface org.protege.editor.owl.ui.renderer.LinkedObjectComponent
Gets the location of the mouse relative to the rendering cell that it is over.
getMouseCellLocation() - Method in class org.protege.editor.owl.ui.table.BasicLinkedOWLObjectTable
Gets the location of the mouse relative to the rendering cell that it is over.
getMouseCellLocation() - Method in class org.protege.editor.owl.ui.tree.OWLLinkedObjectTree
 
getMouseCellRect() - Method in class org.coode.dlquery.ResultsList
 
getMouseCellRect() - Method in class org.protege.editor.owl.ui.framelist.OWLFrameList2
 
getMouseCellRect() - Method in class org.protege.editor.owl.ui.list.OWLLinkedObjectList
 
getMouseCellRect() - Method in interface org.protege.editor.owl.ui.renderer.LinkedObjectComponent
 
getMouseCellRect() - Method in class org.protege.editor.owl.ui.table.BasicLinkedOWLObjectTable
 
getMouseCellRect() - Method in class org.protege.editor.owl.ui.tree.OWLLinkedObjectTree
 
getMouseEvent() - Method in class uk.ac.man.cs.mig.util.graph.event.NodeClickedEvent
Gets the mouse event that is associated with the node click
getMoveAxiomsKits() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.MoveAxiomsWizard
 
getName() - Method in class org.coode.dlquery.DLQueryResultsSection
 
getName() - Method in interface org.protege.editor.core.OntologyRepository
Gets the name of the repository
getName() - Method in enum org.protege.editor.core.ui.about.PluginInfoTableModel.Columns
 
getName() - Method in interface org.protege.editor.core.ui.action.ProtegeActionPlugin
Gets the name of the action.
getName() - Method in class org.protege.editor.core.ui.action.ProtegeActionPluginJPFImpl
Gets the name of the action.
getName() - Method in class org.protege.editor.core.ui.list.MList.TestHeader
 
getName() - Method in class org.protege.editor.core.ui.list.MListButton
 
getName() - Method in interface org.protege.editor.core.ui.list.MListSectionHeader
 
getName() - Method in interface org.protege.editor.owl.model.inference.ProtegeOWLReasonerFactoryPlugin
Gets the name of the reasoner.
getName() - Method in class org.protege.editor.owl.model.inference.ProtegeOWLReasonerFactoryPluginJPFImpl
Gets the name of the reasoner.
getName() - Method in class org.protege.editor.owl.model.repository.ManchesterRepository
 
getName() - Method in class org.protege.editor.owl.model.selection.axioms.AllAxiomsStrategy
 
getName() - Method in class org.protege.editor.owl.model.selection.axioms.AnnotationAxiomsStrategy
 
getName() - Method in interface org.protege.editor.owl.model.selection.axioms.AxiomSelectionStrategy
 
getName() - Method in class org.protege.editor.owl.model.selection.axioms.AxiomTypeStrategy
 
getName() - Method in class org.protege.editor.owl.model.selection.axioms.ClassReferencingAxiomsStrategy
 
getName() - Method in class org.protege.editor.owl.model.selection.axioms.DataPropertyReferencingAxiomStrategy
 
getName() - Method in class org.protege.editor.owl.model.selection.axioms.IndividualReferencingAxiomStrategy
 
getName() - Method in class org.protege.editor.owl.model.selection.axioms.ObjectPropertyReferencingAxiomStrategy
 
getName() - Method in class org.protege.editor.owl.model.selection.ontologies.ActiveOntologySelectionStrategy
 
getName() - Method in class org.protege.editor.owl.model.selection.ontologies.AllLoadedOntologiesSelectionStrategy
 
getName() - Method in class org.protege.editor.owl.model.selection.ontologies.ImportsClosureOntologySelectionStrategy
 
getName() - Method in interface org.protege.editor.owl.model.selection.ontologies.OntologySelectionStrategy
 
getName() - Method in class org.protege.editor.owl.model.selection.ontologies.VisibilityManagerSelectionStrategy
 
getName() - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSection
 
getName() - Method in interface org.protege.editor.owl.ui.frame.OWLFrameAction
Gets the name of the action.
getName() - Method in class org.protege.editor.owl.ui.framelist.CreateClosureAxiomAction
 
getName() - Method in class org.protege.editor.owl.ui.framelist.CreateNewEquivalentClassAction
 
getName() - Method in class org.protege.editor.owl.ui.framelist.MoveAxiomsToOntologyAction
 
getName() - Method in class org.protege.editor.owl.ui.framelist.OWLFrameListPopupMenuAction
 
getName() - Method in class org.protege.editor.owl.ui.framelist.PullIntoActiveOntologyAction
 
getName() - Method in class org.protege.editor.owl.ui.framelist.SwitchToDefiningOntologyAction
 
getName() - Method in class org.protege.editor.owl.ui.metrics.Metric
 
getName() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.MoveAxiomsKit
 
getName() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizGraphPanel
 
getName() - Method in class uk.ac.man.cs.mig.util.graph.ui.GraphComponent
 
getName() - Method in class uk.ac.man.cs.mig.util.wizard.WizardPage
Gets the name of this WizardPage .
getNameLabelLang() - Static method in class org.protege.editor.owl.model.entity.EntityCreationPreferences
 
getNameLabelURI() - Static method in class org.protege.editor.owl.model.entity.EntityCreationPreferences
 
getNamespace(URI) - Method in interface org.protege.editor.owl.model.namespace.NamespaceManager
Gets the namespace for a URI.
getNamespace(URI) - Method in class org.protege.editor.owl.model.namespace.NamespaceManagerImpl
 
getNamespaceMap() - Method in interface org.protege.editor.owl.model.namespace.NamespaceManager
Gets a map of the registered namespaces and prefixes.
getNamespaceMap() - Method in class org.protege.editor.owl.model.namespace.NamespaceManagerImpl
 
getNavigates() - Method in interface org.protege.editor.core.ui.view.ViewComponentPlugin
 
getNavigates() - Method in class org.protege.editor.core.ui.view.ViewComponentPluginAdapter
 
getNavigates() - Method in class org.protege.editor.core.ui.view.ViewComponentPluginJPFImpl
 
getNext() - Method in class org.protege.editor.owl.model.hierarchy.roots.Path
 
getNextButtonLabel() - Method in class uk.ac.man.cs.mig.util.wizard.Wizard
Gets the label displayed on the button that causes the next page to be displayed.
getNextFinishButtonEnabled() - Method in class org.protege.editor.core.ui.wizard.Wizard
Mirrors the WizardModel method of the same name.
getNextID(Class<? extends OWLEntity>) - Method in class org.protege.editor.owl.model.entity.AbstractIDGenerator
 
getNextID(Class<? extends OWLEntity>) - Method in interface org.protege.editor.owl.model.entity.AutoIDGenerator
 
getNextPanelDescriptor() - Method in class org.protege.editor.core.ui.wizard.WizardPanel
Override this class to provide the Object-based identifier of the panel that the user should traverse to when the Next button is pressed.
getNextPanelDescriptor() - Method in class org.protege.editor.owl.ui.action.ExportInferredOntologyIncludeAssertedAxiomsPanel
 
getNextPanelDescriptor() - Method in class org.protege.editor.owl.ui.action.ExportInferredOntologyWizardSelectAxiomsPanel
 
getNextPanelDescriptor() - Method in class org.protege.editor.owl.ui.hierarchy.creation.MakeSiblingClassesDisjointPanel
 
getNextPanelDescriptor() - Method in class org.protege.editor.owl.ui.hierarchy.creation.PickRootClassPanel
 
getNextPanelDescriptor() - Method in class org.protege.editor.owl.ui.hierarchy.creation.TabIndentedHierarchyPanel
 
getNextPanelDescriptor() - Method in class org.protege.editor.owl.ui.ontology.imports.missing.ResolutionTypePanel
 
getNextPanelDescriptor() - Method in class org.protege.editor.owl.ui.ontology.imports.missing.SpecifyFilePathPanel
 
getNextPanelDescriptor() - Method in class org.protege.editor.owl.ui.ontology.imports.wizard.ImportConfirmationPage
 
getNextPanelDescriptor() - Method in class org.protege.editor.owl.ui.ontology.imports.wizard.ImportTypePage
 
getNextPanelDescriptor() - Method in class org.protege.editor.owl.ui.ontology.imports.wizard.ImportVerificationPage
 
getNextPanelDescriptor() - Method in class org.protege.editor.owl.ui.ontology.imports.wizard.LibraryPage
 
getNextPanelDescriptor() - Method in class org.protege.editor.owl.ui.ontology.imports.wizard.LoadedOntologyPage
 
getNextPanelDescriptor() - Method in class org.protege.editor.owl.ui.ontology.imports.wizard.LocalFilePage
 
getNextPanelDescriptor() - Method in class org.protege.editor.owl.ui.ontology.imports.wizard.URLPage
 
getNextPanelDescriptor() - Method in class org.protege.editor.owl.ui.ontology.wizard.AbstractSelectOntologiesPage
 
getNextPanelDescriptor() - Method in class org.protege.editor.owl.ui.ontology.wizard.create.OntologyURIPanel
 
getNextPanelDescriptor() - Method in class org.protege.editor.owl.ui.ontology.wizard.create.PhysicalLocationPanel
 
getNextPanelDescriptor() - Method in class org.protege.editor.owl.ui.ontology.wizard.merge.MergeTypePage
 
getNextPanelDescriptor() - Method in class org.protege.editor.owl.ui.ontology.wizard.merge.SelectOntologiesPage
 
getNextPanelDescriptor() - Method in class org.protege.editor.owl.ui.ontology.wizard.merge.SelectTargetOntologyPage
 
getNextPanelDescriptor() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.MoveAxiomsWizardKitConfigurationPanel
 
getNextPanelDescriptor() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.SelectActionPanel
 
getNextPanelDescriptor() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.SelectKitPanel
 
getNextPanelDescriptor() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.SelectSourceOntologiesPanel
 
getNextPanelDescriptor() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.SelectTargetOntologyPanel
 
getNextPanelDescriptor() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.SelectTargetOntologyTypePanel
 
getNextToken() - Method in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.DotParser
 
getNextToken() - Method in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.DotParserTokenManager
 
getNiceBundleName(Bundle) - Static method in class org.protege.editor.core.BundleManager
 
getNode() - Method in class uk.ac.man.cs.mig.util.graph.event.NodeClickedEvent
Gets the Node associated with the event.
getNodeCount() - Method in interface uk.ac.man.cs.mig.util.graph.graph.Graph
Returns the number of Nodes that the Graph contains.
getNodeCount() - Method in class uk.ac.man.cs.mig.util.graph.graph.impl.DefaultGraph
Returns the number of Nodes that the Graph contains.
getNodeFactory() - Method in interface uk.ac.man.cs.mig.util.graph.controller.Controller
Gets the factory used to produce Nodes.
getNodeFactory() - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultController
Gets the factory used to produce Nodes.
getNodeFactory(NodeFactory) - Method in class uk.ac.man.cs.mig.util.graph.ui.GraphComponent
 
getNodeForObject(Object) - Method in interface uk.ac.man.cs.mig.util.graph.controller.GraphGenerator
Returns the Node that represents the given object.
getNodeForObject(Object) - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultGraphGenerator
Returns the Node that represents the given object.
getNodeIterator() - Method in interface uk.ac.man.cs.mig.util.graph.graph.Graph
Retrieves an Iterator that can be used to traverse the Nodes in the Graph.
getNodeIterator() - Method in class uk.ac.man.cs.mig.util.graph.graph.impl.DefaultGraph
Retrieves an Iterator that can be used to traverse the Nodes in the Graph.
getNodeLabelRenderer() - Method in interface uk.ac.man.cs.mig.util.graph.controller.Controller
Gets the renderer used to generate labels for Nodes.
getNodeLabelRenderer() - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultController
Gets the renderer used to generate labels for Nodes.
getNodeRenderer() - Method in interface uk.ac.man.cs.mig.util.graph.controller.Controller
Gets the renderer used to paint Nodes
getNodeRenderer() - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultController
Gets the renderer used to paint Nodes
getNodes() - Method in class org.protege.editor.core.ui.preferences.node.PreferenceNodeGroup
 
getNodes(OWLObject) - Method in class org.protege.editor.owl.ui.tree.OWLObjectTree
Gets the set of nodes that represent the specified object
getNodes() - Method in interface uk.ac.man.cs.mig.util.graph.graph.Graph
Gets the Nodes contained in the Graph as an array.
getNodes() - Method in class uk.ac.man.cs.mig.util.graph.graph.impl.DefaultGraph
Gets the Nodes contained in the Graph as an array.
getNodes() - Method in class uk.ac.man.cs.mig.util.graph.ui.GraphView
Gets an Iterator that can be used to traverse the Nodes in the Graph
getNotKeyWord() - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererDLSyntax
 
getNotKeyWord() - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
getNumberOfPages() - Method in class uk.ac.man.cs.mig.util.wizard.Wizard
Returns the number of pages that the Wizard isShown.
getNumberOfVisualisedObjects() - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultVisualisedObjectManager
Gets the number of objects contained in the list of objects to be visualised.
getNumberOfVisualisedObjects() - Method in interface uk.ac.man.cs.mig.util.graph.controller.VisualisedObjectManager
Gets the number of objects contained in the list of objects to be visualised.
getObject() - Method in class org.protege.editor.core.ui.list.RemovableObjectList.RemovableObjectListItem
 
getObject() - Method in class org.protege.editor.owl.model.hierarchy.roots.Path
 
getObject() - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.VisualisedObjectWrapper
 
getObjectEditor() - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSection
 
getObjectEditor() - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSectionRow
 
getObjectEditor() - Method in class org.protege.editor.owl.ui.frame.AxiomListFrameSection
 
getObjectEditor() - Method in class org.protege.editor.owl.ui.frame.AxiomListFrameSectionRow
 
getObjectEditor() - Method in class org.protege.editor.owl.ui.frame.ExplanationFrameSection
 
getObjectEditor() - Method in class org.protege.editor.owl.ui.frame.ExplanationFrameSectionRow
 
getObjectEditor() - Method in class org.protege.editor.owl.ui.frame.InferredAxiomsFrameSection
 
getObjectEditor() - Method in class org.protege.editor.owl.ui.frame.InferredAxiomsFrameSectionRow
 
getObjectEditor() - Method in class org.protege.editor.owl.ui.frame.InheritedAnonymousClassesFrameSection
 
getObjectEditor() - Method in class org.protege.editor.owl.ui.frame.InheritedAnonymousClassesFrameSectionRow
 
getObjectEditor() - Method in class org.protege.editor.owl.ui.frame.OWLAnnotationFrameSection
 
getObjectEditor() - Method in class org.protege.editor.owl.ui.frame.OWLAnnotationsFrameSectionRow
 
getObjectEditor() - Method in class org.protege.editor.owl.ui.frame.OWLAxiomAnnotationsFrameSection
 
getObjectEditor() - Method in class org.protege.editor.owl.ui.frame.OWLAxiomAnnotationsFrameSectionRow
 
getObjectEditor() - Method in class org.protege.editor.owl.ui.frame.OWLClassAssertionAxiomIndividualSection
 
getObjectEditor() - Method in class org.protege.editor.owl.ui.frame.OWLClassAssertionAxiomIndividualSectionRow
 
getObjectEditor() - Method in class org.protege.editor.owl.ui.frame.OWLClassAssertionAxiomTypeFrameSection
 
getObjectEditor() - Method in class org.protege.editor.owl.ui.frame.OWLClassAssertionAxiomTypeFrameSectionRow
 
getObjectEditor() - Method in class org.protege.editor.owl.ui.frame.OWLDataPropertyAssertionAxiomFrameSection
 
getObjectEditor() - Method in class org.protege.editor.owl.ui.frame.OWLDataPropertyAssertionAxiomFrameSectionRow
 
getObjectEditor() - Method in class org.protege.editor.owl.ui.frame.OWLDataPropertyRangeFrameSection
 
getObjectEditor() - Method in class org.protege.editor.owl.ui.frame.OWLDataPropertyRangeFrameSectionRow
 
getObjectEditor() - Method in class org.protege.editor.owl.ui.frame.OWLDifferentIndividualAxiomFrameSectionRow
 
getObjectEditor() - Method in class org.protege.editor.owl.ui.frame.OWLDifferentIndividualsAxiomFrameSection
 
getObjectEditor() - Method in class org.protege.editor.owl.ui.frame.OWLDisjointClassesAxiomFrameSection
 
getObjectEditor() - Method in class org.protege.editor.owl.ui.frame.OWLDisjointClassesAxiomFrameSectionRow
 
getObjectEditor() - Method in class org.protege.editor.owl.ui.frame.OWLDisjointDataPropertiesFrameSection
 
getObjectEditor() - Method in class org.protege.editor.owl.ui.frame.OWLDisjointDataPropertiesFrameSectionRow
 
getObjectEditor() - Method in class org.protege.editor.owl.ui.frame.OWLDisjointObjectPropertiesAxiomFrameSectionRow
 
getObjectEditor() - Method in class org.protege.editor.owl.ui.frame.OWLDisjointObjectPropertiesFrameSection
 
getObjectEditor() - Method in class org.protege.editor.owl.ui.frame.OWLEquivalentClassesAxiomFrameSection
 
getObjectEditor() - Method in class org.protege.editor.owl.ui.frame.OWLEquivalentClassesAxiomFrameSectionRow
 
getObjectEditor() - Method in class org.protege.editor.owl.ui.frame.OWLEquivalentDataPropertiesFrameSection
 
getObjectEditor() - Method in class org.protege.editor.owl.ui.frame.OWLEquivalentDataPropertiesFrameSectionRow
 
getObjectEditor() - Method in class org.protege.editor.owl.ui.frame.OWLEquivalentObjectPropertiesAxiomFrameSection
 
getObjectEditor() - Method in class org.protege.editor.owl.ui.frame.OWLEquivalentObjectPropertiesAxiomFrameSectionRow
 
getObjectEditor() - Method in class org.protege.editor.owl.ui.frame.OWLGeneralClassAxiomFrameSectionRow
 
getObjectEditor() - Method in class org.protege.editor.owl.ui.frame.OWLGeneralClassAxiomsFrameSection
 
getObjectEditor() - Method in class org.protege.editor.owl.ui.frame.OWLImportsDeclarationAxiomFrameSectionRow
 
getObjectEditor() - Method in class org.protege.editor.owl.ui.frame.OWLImportsDeclarationFrameSection
 
getObjectEditor() - Method in class org.protege.editor.owl.ui.frame.OWLIndirectImportsFrameSection
 
getObjectEditor() - Method in class org.protege.editor.owl.ui.frame.OWLInverseObjectPropertiesAxiomFrameSection
 
getObjectEditor() - Method in class org.protege.editor.owl.ui.frame.OWLInverseObjectPropertiesAxiomFrameSectionRow
 
getObjectEditor() - Method in class org.protege.editor.owl.ui.frame.OWLNegativeDataPropertyAssertionFrameSection
 
getObjectEditor() - Method in class org.protege.editor.owl.ui.frame.OWLNegativeDataPropertyAssertionFrameSectionRow
 
getObjectEditor() - Method in class org.protege.editor.owl.ui.frame.OWLNegativeObjectPropertyAssertionFrameSection
 
getObjectEditor() - Method in class org.protege.editor.owl.ui.frame.OWLNegativeObjectPropertyAssertionFrameSectionRow
 
getObjectEditor() - Method in class org.protege.editor.owl.ui.frame.OWLObjectPropertyAssertionAxiomFrameSection
 
getObjectEditor() - Method in class org.protege.editor.owl.ui.frame.OWLObjectPropertyAssertionAxiomFrameSectionRow
 
getObjectEditor() - Method in class org.protege.editor.owl.ui.frame.OWLObjectPropertyRangeFrameSection
 
getObjectEditor() - Method in class org.protege.editor.owl.ui.frame.OWLObjectPropertyRangeFrameSectionRow
 
getObjectEditor() - Method in class org.protege.editor.owl.ui.frame.OWLOntologyAnnotationAxiomFrameSection
 
getObjectEditor() - Method in class org.protege.editor.owl.ui.frame.OWLOntologyAnnotationAxiomFrameSectionRow
 
getObjectEditor() - Method in class org.protege.editor.owl.ui.frame.OWLPropertyChainAxiomFrameSection
 
getObjectEditor() - Method in class org.protege.editor.owl.ui.frame.OWLPropertyChainAxiomFrameSectionRow
 
getObjectEditor() - Method in class org.protege.editor.owl.ui.frame.OWLSameIndividualsAxiomFrameSection
 
getObjectEditor() - Method in class org.protege.editor.owl.ui.frame.OWLSameIndividualsAxiomFrameSectionRow
 
getObjectEditor() - Method in class org.protege.editor.owl.ui.frame.OWLSubClassAxiomFrameSection
 
getObjectEditor() - Method in class org.protege.editor.owl.ui.frame.OWLSubClassAxiomFrameSectionRow
 
getObjectEditor() - Method in class org.protege.editor.owl.ui.frame.OWLSubDataPropertyAxiomSuperPropertyFrameSection
 
getObjectEditor() - Method in class org.protege.editor.owl.ui.frame.OWLSubDataPropertyAxiomSuperPropertyFrameSectionRow
 
getObjectEditor() - Method in class org.protege.editor.owl.ui.frame.OWLSubObjectPropertyAxiomSuperPropertyFrameSection
 
getObjectEditor() - Method in class org.protege.editor.owl.ui.frame.OWLSubObjectPropertyAxiomSuperPropertyFrameSectionRow
 
getObjectEditor() - Method in class org.protege.editor.owl.ui.frame.property.AbstractPropertyDomainFrameSection
 
getObjectEditor() - Method in class org.protege.editor.owl.ui.frame.property.AbstractPropertyDomainFrameSectionRow
 
getObjectEditor() - Method in class org.protege.editor.owl.ui.frame.SWRLRuleFrameSectionRow
 
getObjectEditor() - Method in class org.protege.editor.owl.ui.frame.SWRLRulesFrameSection
 
getObjectProperty() - Method in class org.protege.editor.owl.model.util.ObjectSomeRestrictionFillerExtractor
 
getObjectPropertyRelationships(OWLIndividual) - Method in class org.protege.editor.owl.model.inference.NoOpReasoner
 
getObjectRendering(OWLObject) - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSectionRow
 
getObjectRendering(OWLObject) - Method in class org.protege.editor.owl.ui.frame.ExplanationFrameSectionRow
 
getObjects() - Method in class org.protege.editor.owl.ui.frame.OWLAnnotationsFrameSectionRow
 
getObjects() - Method in class org.protege.editor.owl.ui.frame.OWLEquivalentClassesAxiomFrameSectionRow
 
getObjects() - Method in class uk.ac.man.cs.mig.util.graph.event.GraphModelEvent
Gets the objects associated with the event.
getObjects() - Method in class uk.ac.man.cs.mig.util.graph.event.VisualisedObjectManagerEvent
Gets the objects associated with the event
getObjectsToCopy() - Method in class org.coode.dlquery.ResultsList
 
getObjectsToCopy() - Method in class org.protege.editor.owl.ui.explanation.ExplanationGeneratorPanel
 
getObjectsToCopy() - Method in class org.protege.editor.owl.ui.framelist.OWLFrameList2
 
getObjectsToCopy() - Method in class org.protege.editor.owl.ui.view.AnonymousClassesView
 
getObjectsToCopy() - Method in interface org.protege.editor.owl.ui.view.Copyable
Gets the objects that will be copied.
getObjectToCopy() - Method in class org.protege.editor.owl.ui.clshierarchy.AbstractOWLClassHierarchyViewComponent
 
getObjectToCopy() - Method in class org.protege.editor.owl.ui.view.AbstractOWLViewComponent
 
getOntologies() - Method in class org.protege.editor.owl.model.hierarchy.AbstractOWLOntologyObjectHierarchyProvider
 
getOntologies() - Method in class org.protege.editor.owl.model.io.OntologySourcesListener.OntologySourcesChangeEvent
 
getOntologies() - Method in interface org.protege.editor.owl.model.OWLModelManager
Gets the ontologies that are loaded into this model.
getOntologies() - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
 
getOntologies() - Method in class org.protege.editor.owl.model.selection.ontologies.ActiveOntologySelectionStrategy
 
getOntologies() - Method in class org.protege.editor.owl.model.selection.ontologies.AllLoadedOntologiesSelectionStrategy
 
getOntologies() - Method in class org.protege.editor.owl.model.selection.ontologies.ImportsClosureOntologySelectionStrategy
 
getOntologies() - Method in interface org.protege.editor.owl.model.selection.ontologies.OntologySelectionStrategy
 
getOntologies() - Method in class org.protege.editor.owl.model.selection.ontologies.VisibilityManagerSelectionStrategy
 
getOntologies() - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSection
 
getOntologies() - Method in class org.protege.editor.owl.ui.ontology.wizard.AbstractSelectOntologiesPage
 
getOntologies() - Method in class org.protege.editor.owl.ui.ontology.wizard.merge.SelectOntologiesPage
 
getOntologies() - Method in class org.protege.editor.owl.ui.view.OWLIndividualListViewComponent
 
getOntologiesToBeImported() - Method in interface org.protege.editor.owl.ui.ontology.imports.wizard.ImportParameters
 
getOntologiesToMerge() - Method in class org.protege.editor.owl.ui.ontology.wizard.merge.MergeOntologiesWizard
 
getOntologiesToSave() - Method in class org.protege.editor.owl.ui.GatherOntologiesPanel
 
getOntology() - Method in class org.protege.editor.owl.model.hierarchy.tabbed.AbstractOWLObjectHierarchyCreator
 
getOntology() - Method in class org.protege.editor.owl.model.util.OWLAxiomInstance
 
getOntology() - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSectionRow
This row represents an assertion in a particular ontology.
getOntology() - Method in interface org.protege.editor.owl.ui.frame.OWLFrameSectionRow
This row represents an assertion in a particular ontology.
getOntology() - Method in class org.protege.editor.owl.ui.framelist.ConfigurableFrameListExplanationHandler
 
getOntology() - Method in class org.protege.editor.owl.ui.framelist.OWLFrameListExplanationHandler
 
getOntology() - Method in class org.protege.editor.owl.ui.ontology.wizard.merge.SelectTargetOntologyPage
 
getOntology() - Method in class org.protege.editor.owl.ui.usage.UsageByEntityTreeModel.UsageTreeNode
 
getOntologyChanges() - Method in class org.protege.editor.owl.model.entity.OWLEntityCreationSet
 
getOntologyFormat() - Method in class org.protege.editor.owl.ui.GatherOntologiesPanel
 
getOntologyLabelText(OWLOntology, OWLModelManager) - Static method in class org.protege.editor.owl.ui.renderer.OWLOntologyCellRenderer
 
getOntologyLibraryFolder() - Static method in class org.protege.editor.core.FileManager
 
getOntologyLibraryManager() - Method in interface org.protege.editor.owl.model.OWLModelManager
Gets the ontology library manager which is an interface for a repository of "standard"/frequently used ontologies (e.g.
getOntologyLibraryManager() - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
 
getOntologyLocationDescription(URI) - Method in interface org.protege.editor.owl.ui.ontology.imports.wizard.ImportParameters
 
getOntologyPhysicalURI(OWLOntology) - Method in interface org.protege.editor.owl.model.OWLModelManager
 
getOntologyPhysicalURI(OWLOntology) - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
 
getOntologyRepositories() - Method in class org.protege.editor.core.OntologyRepositoryManager
 
getOntologyShortName() - Method in interface org.protege.editor.core.OntologyRepositoryEntry
Gets a short human readable name for this entry
getOntologyToMergeInto() - Method in class org.protege.editor.owl.ui.ontology.wizard.merge.MergeOntologiesWizard
 
getOntologyURI() - Method in interface org.protege.editor.core.OntologyRepositoryEntry
Gets the URI of the ontology that is described by this entry.
getOntologyURI() - Method in class org.protege.editor.owl.model.io.IOListenerEvent
 
getOntologyURI() - Method in class org.protege.editor.owl.model.repository.OntologyURIExtractor
 
getOntologyURI() - Method in class org.protege.editor.owl.ui.action.ExportInferredOntologyWizard
 
getOntologyURI() - Method in class org.protege.editor.owl.ui.ontology.wizard.create.CreateOntologyWizard
 
getOntologyURIs() - Method in class org.protege.editor.owl.model.library.folder.FolderOntologyLibrary
 
getOntologyURIs() - Method in interface org.protege.editor.owl.model.library.OntologyLibrary
Gets the ontologies that this library contains.
getOptions() - Method in interface uk.ac.man.cs.mig.coode.owlviz.ui.ConfigurableOWLVizView
 
getOptions() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizView
 
getOrKeyWord() - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererDLSyntax
 
getOrKeyWord() - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
getOrphanRoots(OWLClass) - Method in class org.protege.editor.owl.model.hierarchy.cls.InferredOWLClassHierarchyProvider
 
getOWLCellRenderer() - Method in class org.protege.editor.owl.ui.framelist.OWLFrameListRenderer
 
getOWLClass(String) - Method in interface org.protege.editor.owl.model.cache.OWLEntityRenderingCache
 
getOWLClass(String) - Method in class org.protege.editor.owl.model.cache.OWLEntityRenderingCacheImpl
 
getOWLClass(String) - Method in class org.protege.editor.owl.model.hierarchy.tabbed.OWLClassHierarchyCreator2
 
getOWLClass(String) - Method in interface org.protege.editor.owl.model.OWLModelManager
 
getOWLClass(String) - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
 
getOWLClass(String) - Method in class org.protege.editor.owl.model.parser.ProtegeOWLEntityChecker
 
getOWLClass() - Method in class org.protege.editor.owl.ui.action.SelectedOWLClassAction
 
getOWLClassColor() - Static method in class org.protege.editor.owl.ui.renderer.OWLSystemColors
 
getOWLClassDescriptionEditor(OWLDescription) - Method in interface org.protege.editor.owl.ui.util.OWLComponentFactory
 
getOWLClassDescriptionEditor(OWLDescription, AxiomType) - Method in interface org.protege.editor.owl.ui.util.OWLComponentFactory
 
getOWLClassDescriptionEditor(OWLDescription) - Method in class org.protege.editor.owl.ui.util.OWLComponentFactoryImpl
 
getOWLClassDescriptionEditor(OWLDescription, AxiomType) - Method in class org.protege.editor.owl.ui.util.OWLComponentFactoryImpl
 
getOWLClassHierarchyProvider() - Method in interface org.protege.editor.owl.model.hierarchy.OWLHierarchyManager
This returns the class hierarchy provider whose hierarchy is generated from told information about the active ontologies.
getOWLClassHierarchyProvider() - Method in class org.protege.editor.owl.model.hierarchy.OWLHierarchyManagerImpl
 
getOWLClassHierarchyProvider() - Method in interface org.protege.editor.owl.model.OWLModelManager
Deprecated. use getOWLHierarchyManager() instead
getOWLClassHierarchyProvider() - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
 
getOWLClassHierarchyProvider() - Method in class org.protege.editor.owl.ui.clshierarchy.AbstractOWLClassHierarchyViewComponent
 
getOWLClassHierarchyProvider() - Method in class org.protege.editor.owl.ui.clshierarchy.AbstractSuperClassHierarchyViewComponent
 
getOWLClassHierarchyProvider() - Method in class org.protege.editor.owl.ui.clshierarchy.InferredOWLClassHierarchyViewComponent
 
getOWLClassHierarchyProvider() - Method in class org.protege.editor.owl.ui.clshierarchy.InferredSuperClassHierarchyViewComponent
 
getOWLClassHierarchyProvider() - Method in class org.protege.editor.owl.ui.clshierarchy.ToldOWLClassHierarchyViewComponent
 
getOWLClassHierarchyProvider() - Method in class org.protege.editor.owl.ui.clshierarchy.ToldSuperClassHierarchyViewComponent
 
getOWLClassRenderings() - Method in interface org.protege.editor.owl.model.cache.OWLEntityRenderingCache
 
getOWLClassRenderings() - Method in class org.protege.editor.owl.model.cache.OWLEntityRenderingCacheImpl
 
getOWLClassSelectorPanel() - Method in class org.protege.editor.owl.model.OWLWorkspace
Deprecated. use the appropriate method on OWLComponentFactory - OWLWorkspace.getOWLComponentFactory()
getOWLClassSelectorPanel() - Method in interface org.protege.editor.owl.ui.util.OWLComponentFactory
 
getOWLClassSelectorPanel() - Method in class org.protege.editor.owl.ui.util.OWLComponentFactoryImpl
 
getOWLComponentFactory() - Method in class org.protege.editor.owl.model.OWLWorkspace
 
getOWLDataFactory() - Method in interface org.protege.editor.owl.model.OWLModelManager
Gets the data factory for the active ontology
getOWLDataFactory() - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
 
getOWLDataFactory() - Method in class org.protege.editor.owl.ui.action.ProtegeOWLAction
 
getOWLDataFactory() - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSection
 
getOWLDataFactory() - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSectionRow
 
getOWLDataFactory() - Method in class org.protege.editor.owl.ui.framelist.OWLFrameListExplanationHandler
 
getOWLDataFactory() - Method in class org.protege.editor.owl.ui.framelist.OWLFrameListPopupMenuAction
 
getOWLDataFactory() - Method in class org.protege.editor.owl.ui.view.AbstractOWLViewComponent
 
getOWLDataProperty(String) - Method in interface org.protege.editor.owl.model.cache.OWLEntityRenderingCache
 
getOWLDataProperty(String) - Method in class org.protege.editor.owl.model.cache.OWLEntityRenderingCacheImpl
 
getOWLDataProperty(String) - Method in interface org.protege.editor.owl.model.OWLModelManager
 
getOWLDataProperty(String) - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
 
getOWLDataProperty(String) - Method in class org.protege.editor.owl.model.parser.ProtegeOWLEntityChecker
 
getOWLDataPropertyColor() - Static method in class org.protege.editor.owl.ui.renderer.OWLSystemColors
 
getOWLDataPropertyHierarchyProvider() - Method in interface org.protege.editor.owl.model.hierarchy.OWLHierarchyManager
 
getOWLDataPropertyHierarchyProvider() - Method in class org.protege.editor.owl.model.hierarchy.OWLHierarchyManagerImpl
 
getOWLDataPropertyHierarchyProvider() - Method in interface org.protege.editor.owl.model.OWLModelManager
Deprecated. use getOWLHierarchyManager() instead
getOWLDataPropertyHierarchyProvider() - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
 
getOWLDataPropertyRenderings() - Method in interface org.protege.editor.owl.model.cache.OWLEntityRenderingCache
 
getOWLDataPropertyRenderings() - Method in class org.protege.editor.owl.model.cache.OWLEntityRenderingCacheImpl
 
getOWLDataPropertySelectorPanel() - Method in class org.protege.editor.owl.model.OWLWorkspace
Deprecated. use the appropriate method on OWLComponentFactory - OWLWorkspace.getOWLComponentFactory()
getOWLDataPropertySelectorPanel() - Method in interface org.protege.editor.owl.ui.util.OWLComponentFactory
 
getOWLDataPropertySelectorPanel() - Method in class org.protege.editor.owl.ui.util.OWLComponentFactoryImpl
 
getOWLDataType(String) - Method in interface org.protege.editor.owl.model.cache.OWLEntityRenderingCache
 
getOWLDataType(String) - Method in class org.protege.editor.owl.model.cache.OWLEntityRenderingCacheImpl
 
getOWLDatatype(String) - Method in interface org.protege.editor.owl.model.OWLModelManager
 
getOWLDatatype(String) - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
 
getOWLDataType(String) - Method in class org.protege.editor.owl.model.parser.ProtegeOWLEntityChecker
 
getOWLDatatypeRenderings() - Method in interface org.protege.editor.owl.model.cache.OWLEntityRenderingCache
 
getOWLDatatypeRenderings() - Method in class org.protege.editor.owl.model.cache.OWLEntityRenderingCacheImpl
 
getOWLDescriptionChecker() - Method in class org.protege.editor.owl.ui.clsdescriptioneditor.ManchesterOWLExpressionCheckerFactory
 
getOWLDescriptionChecker() - Method in interface org.protege.editor.owl.ui.clsdescriptioneditor.OWLExpressionCheckerFactory
 
getOWLDescriptionSetChecker() - Method in class org.protege.editor.owl.ui.clsdescriptioneditor.ManchesterOWLExpressionCheckerFactory
 
getOWLDescriptionSetChecker() - Method in interface org.protege.editor.owl.ui.clsdescriptioneditor.OWLExpressionCheckerFactory
 
getOWLEditorKit() - Method in class org.protege.editor.owl.model.io.IOListenerPluginInstance
 
getOWLEditorKit() - Method in class org.protege.editor.owl.model.OWLWorkspace
 
getOWLEditorKit() - Method in class org.protege.editor.owl.ui.AbstractOWLWizardPanel
 
getOWLEditorKit() - Method in class org.protege.editor.owl.ui.action.OWLObjectHierarchyDeleter
 
getOWLEditorKit() - Method in class org.protege.editor.owl.ui.action.ProtegeOWLAction
 
getOWLEditorKit() - Method in class org.protege.editor.owl.ui.clsdescriptioneditor.ExpressionEditor
 
getOWLEditorKit() - Method in class org.protege.editor.owl.ui.editor.AbstractOWLDescriptionEditor
 
getOWLEditorKit() - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSection
 
getOWLEditorKit() - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSectionRow
 
getOWLEditorKit() - Method in class org.protege.editor.owl.ui.framelist.OWLFrameListPopupMenuAction
 
getOWLEditorKit() - Method in class org.protege.editor.owl.ui.framelist.OWLFrameListRenderer
 
getOWLEditorKit() - Method in class org.protege.editor.owl.ui.ontology.migration.MigrationWizard
Deprecated.  
getOWLEditorKit() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.MoveAxiomsKit
 
getOWLEditorKit() - Method in class org.protege.editor.owl.ui.OWLViewAction
 
getOWLEditorKit() - Method in class org.protege.editor.owl.ui.OWLWorkspaceTab
 
getOWLEditorKit() - Method in class org.protege.editor.owl.ui.OWLWorkspaceViewsTab
 
getOWLEditorKit() - Method in class org.protege.editor.owl.ui.preferences.OWLPreferencesPanel
 
getOWLEditorKit() - Method in class org.protege.editor.owl.ui.SelectedObjectPanel
 
getOWLEditorKit() - Method in class org.protege.editor.owl.ui.selector.AbstractSelectorPanel
 
getOWLEditorKit() - Method in class org.protege.editor.owl.ui.table.BasicLinkedOWLObjectTable
 
getOWLEditorKit() - Method in class org.protege.editor.owl.ui.view.AbstractOWLViewComponent
 
getOWLEntity(String) - Method in interface org.protege.editor.owl.model.cache.OWLEntityRenderingCache
 
getOWLEntity(String) - Method in class org.protege.editor.owl.model.cache.OWLEntityRenderingCacheImpl
 
getOWLEntity() - Method in class org.protege.editor.owl.model.entity.OWLEntityCreationSet
 
getOWLEntity(String) - Method in interface org.protege.editor.owl.model.OWLModelManager
 
getOWLEntity(String) - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
 
getOWLEntityCreationSet() - Method in class org.protege.editor.owl.ui.OWLEntityCreationPanel
 
getOWLEntityFactory() - Method in interface org.protege.editor.owl.model.OWLModelManager
 
getOWLEntityFactory() - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
 
getOWLEntityRenderer() - Method in interface org.protege.editor.owl.model.OWLModelManager
 
getOWLEntityRenderer() - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
 
getOWLEntityRendererFactories() - Method in class org.protege.editor.owl.ui.renderer.OWLEntityRendererFactoryLoader
 
getOWLEntityRenderings() - Method in interface org.protege.editor.owl.model.cache.OWLEntityRenderingCache
 
getOWLEntityRenderings() - Method in class org.protege.editor.owl.model.cache.OWLEntityRenderingCacheImpl
 
getOWLEntityRenderings() - Method in interface org.protege.editor.owl.model.OWLModelManager
 
getOWLEntityRenderings() - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
 
getOWLExpressionCheckerFactory() - Method in interface org.protege.editor.owl.model.OWLModelManager
 
getOWLExpressionCheckerFactory() - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
 
getOWLHierarchyManager() - Method in interface org.protege.editor.owl.model.OWLModelManager
 
getOWLHierarchyManager() - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
 
getOWLIconProvider() - Method in class org.protege.editor.owl.model.OWLWorkspace
 
getOWLIndividual(String) - Method in interface org.protege.editor.owl.model.cache.OWLEntityRenderingCache
 
getOWLIndividual(String) - Method in class org.protege.editor.owl.model.cache.OWLEntityRenderingCacheImpl
 
getOWLIndividual(String) - Method in interface org.protege.editor.owl.model.OWLModelManager
 
getOWLIndividual(String) - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
 
getOWLIndividual(String) - Method in class org.protege.editor.owl.model.parser.ProtegeOWLEntityChecker
 
getOWLIndividualColor() - Static method in class org.protege.editor.owl.ui.renderer.OWLSystemColors
 
getOWLIndividualRenderings() - Method in interface org.protege.editor.owl.model.cache.OWLEntityRenderingCache
 
getOWLIndividualRenderings() - Method in class org.protege.editor.owl.model.cache.OWLEntityRenderingCacheImpl
 
getOWLIndividualSelectorPanel() - Method in class org.protege.editor.owl.model.OWLWorkspace
Deprecated. use the appropriate method on OWLComponentFactory - OWLWorkspace.getOWLComponentFactory()
getOWLIndividualSelectorPanel() - Method in interface org.protege.editor.owl.ui.util.OWLComponentFactory
 
getOWLIndividualSelectorPanel() - Method in class org.protege.editor.owl.ui.util.OWLComponentFactoryImpl
 
getOWLModelManager() - Method in class org.protege.editor.owl.model.OWLWorkspace
 
getOWLModelManager() - Method in class org.protege.editor.owl.OWLEditorKit
 
getOWLModelManager() - Method in class org.protege.editor.owl.ui.AbstractOWLWizardPanel
 
getOWLModelManager() - Method in class org.protege.editor.owl.ui.action.ProtegeOWLAction
 
getOWLModelManager() - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSection
 
getOWLModelManager() - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSectionRow
 
getOWLModelManager() - Method in class org.protege.editor.owl.ui.framelist.OWLFrameListPopupMenuAction
 
getOWLModelManager() - Method in class org.protege.editor.owl.ui.metrics.Metric
 
getOWLModelManager() - Method in class org.protege.editor.owl.ui.navigation.OWLEntityNavPanel
 
getOWLModelManager() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.MoveAxiomsKit
 
getOWLModelManager() - Method in class org.protege.editor.owl.ui.OWLObjectComparator
 
getOWLModelManager() - Method in class org.protege.editor.owl.ui.OWLWorkspaceTab
 
getOWLModelManager() - Method in class org.protege.editor.owl.ui.OWLWorkspaceViewsTab
 
getOWLModelManager() - Method in class org.protege.editor.owl.ui.preferences.OWLPreferencesPanel
 
getOWLModelManager() - Method in class org.protege.editor.owl.ui.renderer.AbstractOWLEntityRenderer
 
getOWLModelManager() - Method in class org.protege.editor.owl.ui.renderer.OWLEntityColorProvider
 
getOWLModelManager() - Method in class org.protege.editor.owl.ui.SelectedObjectPanel
 
getOWLModelManager() - Method in class org.protege.editor.owl.ui.selector.AbstractSelectorPanel
 
getOWLModelManager() - Method in interface org.protege.editor.owl.ui.transfer.OWLObjectDropTarget
 
getOWLModelManager() - Method in class org.protege.editor.owl.ui.tree.OWLObjectTree
 
getOWLModelManager() - Method in class org.protege.editor.owl.ui.view.AbstractOWLViewComponent
 
getOWLModelManager() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizGraphPanel
 
getOWLModelManagerDescriptor() - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
 
getOWLObject() - Method in class org.coode.dlquery.DLQueryResultsSectionItem
 
getOWLObject() - Method in class org.protege.editor.owl.ui.tree.OWLObjectTreeNode
 
getOWLObjectAtMousePosition(MouseEvent) - Method in class org.protege.editor.owl.ui.tree.OWLObjectTree
 
getOWLObjectComparator() - Method in interface org.protege.editor.owl.model.OWLModelManager
 
getOWLObjectComparator() - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
 
getOWLObjectComparator() - Method in class org.protege.editor.owl.ui.tree.OWLObjectTree
Gets the comparator used to order sibling tree nodes.
getOWLObjectProperty(String) - Method in interface org.protege.editor.owl.model.cache.OWLEntityRenderingCache
 
getOWLObjectProperty(String) - Method in class org.protege.editor.owl.model.cache.OWLEntityRenderingCacheImpl
 
getOWLObjectProperty(String) - Method in interface org.protege.editor.owl.model.OWLModelManager
 
getOWLObjectProperty(String) - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
 
getOWLObjectProperty(String) - Method in class org.protege.editor.owl.model.parser.ProtegeOWLEntityChecker
 
getOWLObjectPropertyColor() - Static method in class org.protege.editor.owl.ui.renderer.OWLSystemColors
 
getOWLObjectPropertyHierarchyProvider() - Method in interface org.protege.editor.owl.model.hierarchy.OWLHierarchyManager
 
getOWLObjectPropertyHierarchyProvider() - Method in class org.protege.editor.owl.model.hierarchy.OWLHierarchyManagerImpl
 
getOWLObjectPropertyHierarchyProvider() - Method in interface org.protege.editor.owl.model.OWLModelManager
Deprecated. use getOWLHierarchyManager() instead
getOWLObjectPropertyHierarchyProvider() - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
 
getOWLObjectPropertyRenderings() - Method in interface org.protege.editor.owl.model.cache.OWLEntityRenderingCache
 
getOWLObjectPropertyRenderings() - Method in class org.protege.editor.owl.model.cache.OWLEntityRenderingCacheImpl
 
getOWLObjectPropertySelectorPanel() - Method in class org.protege.editor.owl.model.OWLWorkspace
Deprecated. use the appropriate method on OWLComponentFactory - OWLWorkspace.getOWLComponentFactory()
getOWLObjectPropertySelectorPanel() - Method in interface org.protege.editor.owl.ui.util.OWLComponentFactory
 
getOWLObjectPropertySelectorPanel() - Method in class org.protege.editor.owl.ui.util.OWLComponentFactoryImpl
 
getOWLObjectRenderer() - Method in interface org.protege.editor.owl.model.OWLModelManager
 
getOWLObjectRenderer() - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
 
getOWLOntologyColor() - Static method in class org.protege.editor.owl.ui.renderer.OWLSystemColors
 
getOWLOntologyManager() - Method in class org.protege.editor.owl.model.inference.ProtegeOWLReasonerFactoryAdapter
 
getOWLOntologyManager() - Method in interface org.protege.editor.owl.model.OWLModelManager
 
getOWLOntologyManager() - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
 
getOWLOntologyManager() - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSection
 
getOWLOntologyManager() - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSectionRow
 
getOWLOntologyManager() - Method in interface org.protege.editor.owl.ui.frame.OWLFrameSectionRow
 
getOWLReasonerManager() - Method in interface org.protege.editor.owl.model.OWLModelManager
 
getOWLReasonerManager() - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
 
getOWLSelectionHistoryManager() - Method in class org.protege.editor.owl.model.OWLWorkspace
 
getOWLSelectionModel() - Method in class org.protege.editor.owl.model.OWLWorkspace
 
getOWLViewComponent() - Method in class org.protege.editor.owl.ui.OWLViewAction
 
getOWLWorkspace() - Method in class org.protege.editor.owl.OWLEditorKit
 
getOWLWorkspace() - Method in class org.protege.editor.owl.ui.action.ProtegeOWLAction
 
getOWLWorkspace() - Method in class org.protege.editor.owl.ui.SelectedObjectPanel
 
getOWLWorkspace() - Method in class org.protege.editor.owl.ui.view.AbstractOWLViewComponent
 
getOwner() - Method in class org.protege.editor.core.ui.wizard.Wizard
Returns the owner of the generated javax.swing.JDialog.
getPackageAdmin() - Method in class org.protege.editor.core.plugin.PluginUtilities
 
getPage(String) - Method in class uk.ac.man.cs.mig.util.wizard.Wizard
Gets a page contained in the Wizard with the specified name.
getPageContent(OWLObject) - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.popup.ConditionsPopupPage
 
getPageContent(OWLObject) - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.popup.OWLObjectPopupPage
 
getPagePanelLayout() - Method in class uk.ac.man.cs.mig.util.wizard.Wizard
 
getPanel(Object) - Method in class org.protege.editor.core.ui.wizard.WizardModel
 
getParameterValue(IExtension, String, String) - Static method in class org.protege.editor.core.plugin.PluginProperties
 
getParameterValues(IExtension, String) - Static method in class org.protege.editor.core.plugin.PluginProperties
 
getParent() - Method in class org.protege.editor.owl.model.hierarchy.tabbed.Edge
 
getParent() - Method in class org.protege.editor.owl.ui.tree.OWLObjectTreeNode
 
getParentCount(Object) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.AbstractOWLClassGraphModel
 
getParentCount(Object) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.OWLOntologyImportsGraphModel
 
getParentCount(Object) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.OWLVizAxiomGraphModel
 
getParentCount(Object) - Method in interface uk.ac.man.cs.mig.util.graph.model.GraphModel
Retrives the number of parents that the specified object has.
getParentCount(Object) - Method in class uk.ac.man.cs.mig.util.graph.model.impl.DefaultGraphModel
Retrives the number of parents that the specified object has.
getParentCount() - Method in class uk.ac.man.cs.mig.util.graph.model.impl.DefaultGraphNode
 
getParentId() - Method in interface org.protege.editor.core.ui.menu.MenuActionPlugin
Gets the parent menu id.
getParentId() - Method in class org.protege.editor.core.ui.menu.MenuActionPluginJPFImpl
 
getParents(P) - Method in class org.protege.editor.owl.model.hierarchy.AbstractOWLPropertyHierarchyProvider
 
getParents(OWLClass) - Method in class org.protege.editor.owl.model.hierarchy.AssertedClassHierarchyProvider
Deprecated.  
getParents(OWLClass) - Method in class org.protege.editor.owl.model.hierarchy.AssertedClassHierarchyProvider2
 
getParents(OWLClass) - Method in class org.protege.editor.owl.model.hierarchy.AssertedSuperClassHierarchyProvider
 
getParents(OWLClass) - Method in class org.protege.editor.owl.model.hierarchy.cls.InferredOWLClassHierarchyProvider
 
getParents(OWLClass) - Method in class org.protege.editor.owl.model.hierarchy.cls.InferredSuperClassHierarchyProvider
 
getParents(OWLObject) - Method in class org.protege.editor.owl.model.hierarchy.IndividualsByInferredTypeHierarchyProvider
 
getParents(OWLObject) - Method in class org.protege.editor.owl.model.hierarchy.IndividualsByTypeHierarchyProvider
 
getParents(N) - Method in interface org.protege.editor.owl.model.hierarchy.OWLObjectHierarchyProvider
 
getParents(OWLOntology) - Method in class org.protege.editor.owl.model.hierarchy.OWLOntologyHierarchyProvider
 
getParents(OWLObjectProperty) - Method in class org.protege.editor.owl.model.hierarchy.property.InferredObjectPropertyHierarchyProvider
 
getParents(OWLObject) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.AbstractOWLClassGraphModel
 
getParents(Object) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.AbstractOWLClassGraphModel
 
getParents(Object) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.OWLOntologyImportsGraphModel
 
getParents(Object) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.OWLVizAxiomGraphModel
 
getParents(Object) - Method in interface uk.ac.man.cs.mig.util.graph.model.GraphModel
Retrieves the parents of the specified object
getParents(Object) - Method in class uk.ac.man.cs.mig.util.graph.model.impl.DefaultGraphModel
Retrieves the parents of the specified object
getParents() - Method in class uk.ac.man.cs.mig.util.graph.model.impl.DefaultGraphNode
 
getParentsHiddenCount(Object) - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultVisualisedObjectManager
Determines how many parents of the specified object are hidden.
getParentsHiddenCount(Object) - Method in interface uk.ac.man.cs.mig.util.graph.controller.VisualisedObjectManager
Determines how many parents of the specified object are hidden.
getParentsShownCount(Object) - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultVisualisedObjectManager
Determines how many parents of the specified object are shown.
getParentsShownCount(Object) - Method in interface uk.ac.man.cs.mig.util.graph.controller.VisualisedObjectManager
Determines how many parents of the specified object are shown.
getParentUserObjects() - Method in class uk.ac.man.cs.mig.util.graph.model.impl.DefaultGraphNode
 
getPath() - Method in interface org.protege.editor.owl.ui.frame.OWLFrameAction
Gets the path of the action.
getPathsToRoot(N) - Method in class org.protege.editor.owl.model.hierarchy.AbstractOWLObjectHierarchyProvider
Gets the paths to the root class for the specified object.
getPathsToRoot(N) - Method in interface org.protege.editor.owl.model.hierarchy.OWLObjectHierarchyProvider
 
getPhysicalURI() - Method in interface org.protege.editor.core.OntologyRepositoryEntry
Gets the physical URI of the ontology that is described by this entry.
getPhysicalURI(URI) - Method in class org.protege.editor.owl.model.io.AutoMappedRepositoryURIMapper
 
getPhysicalURI() - Method in class org.protege.editor.owl.model.io.IOListenerEvent
 
getPhysicalURI(URI) - Method in class org.protege.editor.owl.model.io.UserRepositoryURIMapper
 
getPhysicalURI(URI) - Method in class org.protege.editor.owl.model.io.UserResolvedURIMapper
 
getPhysicalURI(URI) - Method in class org.protege.editor.owl.model.io.WebConnectionURIMapper
 
getPhysicalURI(URI) - Method in class org.protege.editor.owl.model.library.folder.FolderOntologyLibrary
 
getPhysicalURI(URI) - Method in interface org.protege.editor.owl.model.library.OntologyLibrary
Gets the physical URI which can be used to obtain a stream in order to load the ontology.
getPhysicalURI(URI) - Method in interface org.protege.editor.owl.model.MissingImportHandler
Given an ontology URI, the missing import handler sets up the appropriate libraries/mappings so that the system can obtain a physical URI for the given ontology.
getPhysicalURI(URI) - Method in class org.protege.editor.owl.model.MissingImportHandlerImpl
 
getPhysicalURI() - Method in class org.protege.editor.owl.OWLModelManagerDescriptor
 
getPhysicalURI() - Method in class org.protege.editor.owl.ui.action.ExportInferredOntologyWizard
 
getPhysicalURI(URI) - Method in class org.protege.editor.owl.ui.ontology.imports.missing.MissingImportHandlerUI
 
getPluginDescriptor() - Method in class org.protege.editor.core.update.PluginInfo
 
getPluginForTabName(String, TabbedWorkspace) - Method in class org.protege.editor.core.ui.workspace.CustomWorkspaceTabsManager
Gets a custom tab plugin for a custom tab.
getPluginInfo() - Method in class org.protege.editor.core.update.PluginInfoDocument
 
getPluginRegistry() - Method in class org.protege.editor.core.update.PluginManager
 
getPluginRegistryLocation() - Method in class org.protege.editor.core.update.PluginManager
 
getPlugins() - Method in class org.protege.editor.core.BundleManager
 
getPlugins() - Method in class org.protege.editor.core.editorkit.EditorKitFactoryPluginLoader
 
getPlugins() - Method in class org.protege.editor.core.plugin.AbstractPluginLoader
Gets the plugins
getPluginsToInstall() - Method in class org.protege.editor.core.update.PluginPanel
 
getPluralDescription() - Method in class org.protege.editor.owl.ui.action.AbstractDeleteEntityAction
Returns the plural name of a set of entities e.g.
getPluralDescription() - Method in class org.protege.editor.owl.ui.clshierarchy.DeleteClassAction
 
getPluralDescription() - Method in class org.protege.editor.owl.ui.view.DeleteDataPropertyAction
 
getPluralDescription() - Method in class org.protege.editor.owl.ui.view.DeleteObjectPropertyAction
 
getPopup(Object) - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.popup.OWLObjectPopupProvider
 
getPopup(Object) - Method in interface uk.ac.man.cs.mig.util.graph.ui.PopupProvider
Gets the content used to display a tooltip style popup when the mouse hovers over a Node in the GraphView.
getPopupPages() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.popup.PopupManager
 
getPosition() - Method in class uk.ac.man.cs.mig.util.graph.graph.impl.DefaultNode
Gets the position of the Node.
getPosition() - Method in class uk.ac.man.cs.mig.util.graph.graph.impl.EllipticalNode
Gets the position of the Node.
getPosition() - Method in class uk.ac.man.cs.mig.util.graph.graph.impl.TriangularNode
Gets the position of the Node.
getPosition() - Method in interface uk.ac.man.cs.mig.util.graph.graph.Node
Gets the position of the Node.
getPreferences() - Static method in class org.protege.editor.core.ui.workspace.TabbedWorkspaceStateManager
 
getPreferencesForSet(String, Class) - Method in class org.protege.editor.core.prefs.JavaBackedPreferencesManagerImpl
 
getPreferencesForSet(String, String) - Method in class org.protege.editor.core.prefs.JavaBackedPreferencesManagerImpl
 
getPreferencesForSet(String, String) - Method in class org.protege.editor.core.prefs.PreferencesManager
Gets the preferences with the specified id, which are contained in the preferences set with the specified id.
getPreferencesForSet(String, Class) - Method in class org.protege.editor.core.prefs.PreferencesManager
A convenience method that gets preferences using an id generated from the name of a class.
getPreferredLabel() - Method in class org.protege.editor.owl.model.refactor.ontology.ConvertEntityURIsToIdentifierPattern
 
getPreferredSize() - Method in class org.protege.editor.core.ui.about.AboutPanel
 
getPreferredSize() - Method in class org.protege.editor.core.ui.error.ErrorLogPanel
 
getPreferredSize() - Method in class org.protege.editor.core.ui.OpenFromRepositoryPanel
 
getPreferredSize() - Method in class org.protege.editor.core.ui.preferences.PreferencesDialogPanel
 
getPreferredSize() - Method in class org.protege.editor.core.ui.progress.BackgroundTaskListPanel
 
getPreferredSize() - Method in class org.protege.editor.core.ui.wizard.AbstractWizardPanel
 
getPreferredSize() - Method in class org.protege.editor.owl.ui.find.OWLEntityFindPanel
 
getPreferredSize() - Method in class org.protege.editor.owl.ui.library.OntologyLibraryPanel
 
getPreferredSize() - Method in class org.protege.editor.owl.ui.list.OWLEntityListPanel
 
getPreferredSize() - Method in class org.protege.editor.owl.ui.metrics.DLNamePanel
 
getPreferredSize() - Method in class org.protege.editor.owl.ui.ontology.location.PhysicalLocationPanel
 
getPreferredSize() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.SelectSourceOntologiesPanel
 
getPreferredSize() - Method in class org.protege.editor.owl.ui.prefix.PrefixMappingPanel
 
getPreferredSize() - Method in class org.protege.editor.owl.ui.renderer.AnnotationRendererPanel
 
getPreferredSize() - Method in class org.protege.editor.owl.ui.selector.AbstractSelectorPanel
 
getPreferredSize() - Method in class org.protege.editor.owl.ui.selector.OWLOntologySelectorPanel
 
getPreferredSize(Node, Dimension) - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.renderer.OWLClsNodeRenderer
Compute the size of the Node
getPreferredSize(Node, Dimension) - Method in class uk.ac.man.cs.mig.util.graph.renderer.impl.DefaultNodeRenderer
 
getPreferredSize(Node, Dimension) - Method in interface uk.ac.man.cs.mig.util.graph.renderer.NodeRenderer
Gets the preferred size of the specified Node.
getPreferredSize() - Method in class uk.ac.man.cs.mig.util.graph.ui.GraphComponent
 
getPreferredSize() - Method in class uk.ac.man.cs.mig.util.graph.ui.impl.DefaultGraphView
If the preferredSize has been set to a non-null value just returns it.
getPreferredWidth() - Method in class org.protege.editor.owl.ui.renderer.OWLCellRenderer
 
getPrefix(Class<? extends OWLEntity>) - Method in class org.protege.editor.owl.model.entity.AbstractIDGenerator
 
getPrefix() - Static method in class org.protege.editor.owl.model.entity.EntityCreationPreferences
 
getPrefix(URI) - Method in interface org.protege.editor.owl.model.namespace.NamespaceManager
Gets the namespace prefix for the specified URI
getPrefix(URI) - Method in class org.protege.editor.owl.model.namespace.NamespaceManagerImpl
 
getPrefix() - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSectionRow
 
getPrefix() - Method in class org.protege.editor.owl.ui.frame.ExplanationFrameSectionRow
 
getPrefix() - Method in class org.protege.editor.owl.ui.hierarchy.creation.CreateClassHierarchyWizard
 
getPrefix() - Method in class org.protege.editor.owl.ui.hierarchy.creation.TabIndentedHierarchyPanel
 
getPrefix(String) - Method in interface org.protege.editor.owl.ui.prefix.PrefixMapper
For the given value, gets the prefix that maps to this value.
getPrefix(String) - Method in class org.protege.editor.owl.ui.prefix.PrefixMapperImpl
 
getPrefixes() - Method in interface org.protege.editor.owl.ui.prefix.PrefixMapper
Gets the set of all prefixes for which there are mappings.
getPrefixes() - Method in class org.protege.editor.owl.ui.prefix.PrefixMapperImpl
 
getPrefixes() - Method in class org.protege.editor.owl.ui.prefix.PrefixMapperManager
 
getPrefixMap() - Method in interface org.protege.editor.owl.ui.prefix.PrefixMapper
Gets a copy of the prefix map held by this mapper.
getPrefixMap() - Method in class org.protege.editor.owl.ui.prefix.PrefixMapperImpl
 
getPrefixMapperTableModel() - Method in class org.protege.editor.owl.ui.prefix.PrefixMapperTable
 
getPrevButtonLabel() - Method in class uk.ac.man.cs.mig.util.wizard.Wizard
Gets the label displayed on the button that causes the previous page to be displayed.
getProgressMonitor() - Method in class org.protege.editor.owl.ui.explanation.ExplanationGeneratorPanel
 
getProperties(JComponent) - Method in class org.protege.editor.core.ui.view.ViewComponentPropertiesFactory
 
getProperties() - Static method in class uk.ac.man.cs.mig.coode.owlviz.ui.options.OWLVizProperties
Deprecated. Gets the one and only instance of the OWLViz properties.
getPropertiesReferencedInChange(List<? extends OWLOntologyChange>) - Method in class org.protege.editor.owl.model.hierarchy.AbstractOWLPropertyHierarchyProvider
 
getPropertiesReferencedInChange(List<? extends OWLOntologyChange>) - Method in class org.protege.editor.owl.model.hierarchy.OWLDataPropertyHierarchyProvider
 
getPropertiesReferencedInChange(List<? extends OWLOntologyChange>) - Method in class org.protege.editor.owl.model.hierarchy.OWLObjectPropertyHierarchyProvider
 
getProperty() - Method in class org.protege.editor.owl.ui.frame.OWLDataPropertyConstantPair
 
getProperty() - Method in class org.protege.editor.owl.ui.frame.OWLObjectPropertyIndividualPair
 
getProperty(String, String) - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.options.OWLVizProperties
Deprecated. Gets a value for the property.
getPropertyChainChecker() - Method in class org.protege.editor.owl.ui.clsdescriptioneditor.ManchesterOWLExpressionCheckerFactory
 
getPropertyChainChecker() - Method in interface org.protege.editor.owl.ui.clsdescriptioneditor.OWLExpressionCheckerFactory
 
getProtegeProperty(String) - Static method in class org.protege.editor.core.plugin.PluginProperties
 
getProvider() - Method in class org.protege.editor.owl.ui.tree.OWLObjectTree
Gets the hierarchy provider that this tree uses to generate its branches.
getQName(URI) - Method in interface org.protege.editor.owl.model.namespace.NamespaceManager
Gets the QName for the specified URI.
getQName(URI) - Method in class org.protege.editor.owl.model.namespace.NamespaceManagerImpl
 
getR(X) - Method in interface org.protege.editor.owl.model.hierarchy.roots.Relation
 
getRanges(OWLObjectProperty) - Method in class org.protege.editor.owl.model.inference.NoOpReasoner
 
getRanges(OWLDataProperty) - Method in class org.protege.editor.owl.model.inference.NoOpReasoner
 
getRankSpacing() - Method in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.DotLayoutEngineProperties
 
getRawID(Class<? extends OWLEntity>) - Method in class org.protege.editor.owl.model.entity.AbstractIDGenerator
 
getRawID(Class<? extends OWLEntity>) - Method in class org.protege.editor.owl.model.entity.IterativeAutoIDGenerator
 
getRawID(Class<? extends OWLEntity>) - Method in class org.protege.editor.owl.model.entity.PseudoRandomAutoIDGenerator
 
getReadmeURI() - Method in class org.protege.editor.core.update.PluginInfo
 
getReasoner() - Method in class org.protege.editor.owl.model.hierarchy.cls.InferredOWLClassHierarchyProvider
 
getReasoner() - Method in class org.protege.editor.owl.model.hierarchy.property.InferredObjectPropertyHierarchyProvider
 
getReasoner() - Method in class org.protege.editor.owl.model.inference.OWLReasonerUtils
 
getReasoner() - Method in interface org.protege.editor.owl.model.OWLModelManager
 
getReasoner() - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
 
getReasoner() - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSection
 
getReasoner() - Method in class org.protege.editor.owl.ui.framelist.ConfigurableFrameListExplanationHandler
 
getReasoner() - Method in class org.protege.editor.owl.ui.framelist.OWLFrameListExplanationHandler
 
getReasonerId() - Method in class org.protege.editor.owl.model.inference.NoOpReasonerFactory
 
getReasonerId() - Method in interface org.protege.editor.owl.model.inference.ProtegeOWLReasonerFactory
Gets the id of the reasoner that this factory creates
getReasonerId() - Method in class org.protege.editor.owl.model.inference.ProtegeOWLReasonerFactoryAdapter
 
getReasonerName() - Method in class org.protege.editor.owl.model.inference.NoOpReasonerFactory
 
getReasonerName() - Method in interface org.protege.editor.owl.model.inference.ProtegeOWLReasonerFactory
Gets the name of the reasoner that this factory creates.
getReasonerName() - Method in class org.protege.editor.owl.model.inference.ProtegeOWLReasonerFactoryAdapter
 
getReferencedDatatypes(Set<OWLOntology>) - Method in class org.protege.editor.owl.model.util.OWLDataTypeUtils
 
getReferencedProperties(OWLOntology) - Method in class org.protege.editor.owl.model.hierarchy.AbstractOWLPropertyHierarchyProvider
Gets the relevant properties in the specified ontology that are contained within the property hierarchy.
getReferencedProperties(OWLOntology) - Method in class org.protege.editor.owl.model.hierarchy.OWLDataPropertyHierarchyProvider
Gets the relevant properties in the specified ontology that are contained within the property hierarchy.
getReferencedProperties(OWLOntology) - Method in class org.protege.editor.owl.model.hierarchy.OWLObjectPropertyHierarchyProvider
Gets the relevant properties in the specified ontology that are contained within the property hierarchy.
getRelatedIndividuals(OWLIndividual, OWLObjectPropertyExpression) - Method in class org.protege.editor.owl.model.inference.NoOpReasoner
 
getRelatedObjectsToAdd(Object) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.AbstractOWLClassGraphModel
 
getRelatedObjectsToAdd(Object) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.OWLOntologyImportsGraphModel
 
getRelatedObjectsToAdd(Object) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.OWLVizAxiomGraphModel
 
getRelatedObjectsToAdd(Object) - Method in interface uk.ac.man.cs.mig.util.graph.model.GraphModel
In some situations when an object is displayed in a graph it is necessary to display other (related) objects automatically.
getRelatedObjectsToAdd(Object) - Method in class uk.ac.man.cs.mig.util.graph.model.impl.DefaultGraphModel
In some situations when an object is displayed in a graph it is necessary to display other (related) objects automatically.
getRelatedObjectsToRemove(Object) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.AbstractOWLClassGraphModel
 
getRelatedObjectsToRemove(Object) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.OWLOntologyImportsGraphModel
 
getRelatedObjectsToRemove(Object) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.OWLVizAxiomGraphModel
 
getRelatedObjectsToRemove(Object) - Method in interface uk.ac.man.cs.mig.util.graph.model.GraphModel
In some situations when an object displayed in a graph is made invisible it might be useful to make other related objects invisible.
getRelatedObjectsToRemove(Object) - Method in class uk.ac.man.cs.mig.util.graph.model.impl.DefaultGraphModel
In some situations when an object displayed in a graph is made invisible it might be useful to make other related objects invisible.
getRelatedValues(OWLIndividual, OWLDataPropertyExpression) - Method in class org.protege.editor.owl.model.inference.NoOpReasoner
 
getRelationshipDirection(Object, Object) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.AbstractOWLClassGraphModel
 
getRelationshipDirection(Object, Object) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.OWLOntologyImportsGraphModel
 
getRelationshipDirection(Object, Object) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.OWLVizAxiomGraphModel
 
getRelationshipDirection(Object, Object) - Method in interface uk.ac.man.cs.mig.util.graph.model.GraphModel
Gets the direction of the relationship.
getRelationshipDirection(Object, Object) - Method in class uk.ac.man.cs.mig.util.graph.model.impl.DefaultGraphModel
Gets the direction of the relationship
getRelationshipType(Object, Object) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.AbstractOWLClassGraphModel
 
getRelationshipType(Object, Object) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.OWLOntologyImportsGraphModel
 
getRelationshipType(Object, Object) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.OWLVizAxiomGraphModel
 
getRelationshipType(Object, Object) - Method in interface uk.ac.man.cs.mig.util.graph.model.GraphModel
Retrieves the type of relationship between the specified objects.
getRelationshipType(Object, Object) - Method in class uk.ac.man.cs.mig.util.graph.model.impl.DefaultGraphModel
Retrieves the type of relationship between the specified objects.
getReloadFlag() - Method in class org.protege.editor.owl.ui.error.OntologyLoadErrorHandlerUI
 
getRemovedLibraries() - Method in class org.protege.editor.owl.ui.library.OntologyLibraryPanel
 
getRemovedParents(N) - Method in class org.protege.editor.owl.model.hierarchy.OWLObjectHierarchyDiffTool
 
getRenamePuns() - Method in class org.protege.editor.owl.ui.rename.RenameEntityPanel
 
getRenamer() - Method in class org.protege.editor.owl.ui.rename.RenameEntitiesPanel
 
getRenderer() - Method in class org.protege.editor.owl.ui.frame.ExplanationFrame
 
getRendererClass() - Method in class org.protege.editor.owl.ui.renderer.OWLRendererPreferences
 
getRendererComponent() - Method in class org.protege.editor.owl.ui.transfer.OWLObjectDragGestureListener
 
getRendererComponent() - Method in class org.protege.editor.owl.ui.transfer.OWLObjectListDragGestureListener
 
getRendererComponent() - Method in class org.protege.editor.owl.ui.transfer.OWLObjectTreeDragGestureListener
 
getRendererComponentSize() - Method in class org.protege.editor.owl.ui.transfer.OWLObjectDragGestureListener
 
getRendererComponentSize() - Method in class org.protege.editor.owl.ui.transfer.OWLObjectListDragGestureListener
 
getRendererComponentSize() - Method in class org.protege.editor.owl.ui.transfer.OWLObjectTreeDragGestureListener
 
getRendering(OWLEntity) - Method in interface org.protege.editor.owl.model.cache.OWLEntityRenderingCache
 
getRendering(OWLEntity) - Method in class org.protege.editor.owl.model.cache.OWLEntityRenderingCacheImpl
 
getRendering(OWLDescription) - Method in class org.protege.editor.owl.model.cache.OWLExpressionUserCache
 
getRendering(OWLObject, OWLObjectRenderer) - Method in class org.protege.editor.owl.model.cache.OWLObjectRenderingCache
 
getRendering(OWLObject) - Method in interface org.protege.editor.owl.model.OWLModelManager
 
getRendering(OWLObject) - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
 
getRendering() - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSection
Gets the rendering for this section, which will be used to visually indicate the section.
getRendering() - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSectionRow
Gets the rendering of the value of a particular column.
getRendering() - Method in class org.protege.editor.owl.ui.frame.ExplanationFrameSectionRow
 
getRendering(URI) - Method in class org.protege.editor.owl.ui.renderer.OWLAnnotationURIRenderer
 
getRendering(Object) - Method in class org.protege.editor.owl.ui.renderer.OWLCellRenderer
 
getRendering(OWLEntity) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererDLSyntax
 
getRendering(OWLEntity) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
getRenderings() - Method in class org.protege.editor.owl.model.cache.OWLExpressionUserCache
 
getReplaceWithValue() - Method in class org.protege.editor.owl.ui.rename.RenameEntitiesPanel
 
getRestrictedProperties() - Method in class org.protege.editor.owl.model.util.RestrictedPropertyExtractor
 
getResults() - Method in class org.coode.dlquery.OWLDescriptionNodeQueryVisitor
 
getResultsViewId() - Method in class org.protege.editor.owl.ui.clshierarchy.DeleteClassAction
 
getReturnCode() - Method in class org.protege.editor.core.ui.wizard.Wizard
Retrieves the last return code set by the dialog.
getReverseChange() - Method in class org.protege.editor.owl.model.history.ReverseChangeGenerator
 
getRightMargin() - Method in class org.protege.editor.owl.ui.renderer.OWLCellRenderer
 
getRightNode() - Method in class org.protege.editor.owl.model.description.AbstractQueryNode
 
getRightNode() - Method in class org.protege.editor.owl.model.description.OWLDescriptionLeafNode
 
getRightNode() - Method in interface org.protege.editor.owl.model.description.OWLDescriptionNode
 
getRollOverColor() - Method in class org.protege.editor.core.ui.list.MListButton
 
getRoot() - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSectionRow
Gets the root object of the frame that this row belongs to.
getRoot() - Method in interface org.protege.editor.owl.ui.frame.OWLFrameSectionRow
Gets the root object of the frame that this row belongs to.
getRootClass() - Method in class org.protege.editor.owl.ui.hierarchy.creation.CreateClassHierarchyWizard
 
getRootClass() - Method in class org.protege.editor.owl.ui.hierarchy.creation.PickRootClassPanel
 
getRootObject() - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrame
 
getRootObject() - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSection
 
getRootObject() - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSectionRow
 
getRootObject() - Method in class org.protege.editor.owl.ui.frame.cls.AbstractOWLClassAxiomFrameSection
 
getRootObject() - Method in interface org.protege.editor.owl.ui.frame.OWLFrame
Gets the frame root object.
getRootObject() - Method in interface org.protege.editor.owl.ui.frame.OWLFrameSection
 
getRootObject() - Method in class org.protege.editor.owl.ui.framelist.OWLFrameList2
 
getRootObject() - Method in class org.protege.editor.owl.ui.framelist.OWLFrameListPopupMenuAction
 
getRoots() - Method in class org.protege.editor.owl.model.hierarchy.AbstractOWLPropertyHierarchyProvider
Gets the objects that represent the roots of the hierarchy.
getRoots() - Method in class org.protege.editor.owl.model.hierarchy.AbstractSuperClassHierarchyProvider
 
getRoots() - Method in class org.protege.editor.owl.model.hierarchy.AssertedClassHierarchyProvider
Deprecated.  
getRoots() - Method in class org.protege.editor.owl.model.hierarchy.AssertedClassHierarchyProvider2
 
getRoots() - Method in class org.protege.editor.owl.model.hierarchy.cls.InferredOWLClassHierarchyProvider
 
getRoots() - Method in class org.protege.editor.owl.model.hierarchy.IndividualsByInferredTypeHierarchyProvider
 
getRoots() - Method in class org.protege.editor.owl.model.hierarchy.IndividualsByTypeHierarchyProvider
 
getRoots() - Method in interface org.protege.editor.owl.model.hierarchy.OWLObjectHierarchyProvider
Gets the objects that represent the roots of the hierarchy.
getRoots() - Method in class org.protege.editor.owl.model.hierarchy.OWLOntologyHierarchyProvider
 
getRotationCount() - Method in class org.protege.common.log.ProtegeRotatingAppender
 
getRowComparator() - Method in class org.protege.editor.owl.ui.frame.AxiomListFrameSection
 
getRowComparator() - Method in class org.protege.editor.owl.ui.frame.ExplanationFrameSection
 
getRowComparator() - Method in class org.protege.editor.owl.ui.frame.InferredAxiomsFrameSection
 
getRowComparator() - Method in class org.protege.editor.owl.ui.frame.InheritedAnonymousClassesFrameSection
 
getRowComparator() - Method in class org.protege.editor.owl.ui.frame.OWLAnnotationFrameSection
Obtains a comparator which can be used to sort the rows in this section.
getRowComparator() - Method in class org.protege.editor.owl.ui.frame.OWLAxiomAnnotationsFrameSection
 
getRowComparator() - Method in class org.protege.editor.owl.ui.frame.OWLClassAssertionAxiomIndividualSection
Obtains a comparator which can be used to sort the rows in this section.
getRowComparator() - Method in class org.protege.editor.owl.ui.frame.OWLClassAssertionAxiomTypeFrameSection
Obtains a comparator which can be used to sort the rows in this section.
getRowComparator() - Method in class org.protege.editor.owl.ui.frame.OWLDataPropertyAssertionAxiomFrameSection
Obtains a comparator which can be used to sort the rows in this section.
getRowComparator() - Method in class org.protege.editor.owl.ui.frame.OWLDataPropertyRangeFrameSection
 
getRowComparator() - Method in class org.protege.editor.owl.ui.frame.OWLDifferentIndividualsAxiomFrameSection
Obtains a comparator which can be used to sort the rows in this section.
getRowComparator() - Method in class org.protege.editor.owl.ui.frame.OWLDisjointClassesAxiomFrameSection
Obtains a comparator which can be used to sort the rows in this section.
getRowComparator() - Method in class org.protege.editor.owl.ui.frame.OWLDisjointDataPropertiesFrameSection
 
getRowComparator() - Method in class org.protege.editor.owl.ui.frame.OWLDisjointObjectPropertiesFrameSection
Obtains a comparator which can be used to sort the rows in this section.
getRowComparator() - Method in class org.protege.editor.owl.ui.frame.OWLEquivalentClassesAxiomFrameSection
Obtains a comparator which can be used to sort the rows in this section.
getRowComparator() - Method in class org.protege.editor.owl.ui.frame.OWLEquivalentDataPropertiesFrameSection
 
getRowComparator() - Method in class org.protege.editor.owl.ui.frame.OWLEquivalentObjectPropertiesAxiomFrameSection
Obtains a comparator which can be used to sort the rows in this section.
getRowComparator() - Method in interface org.protege.editor.owl.ui.frame.OWLFrameSection
Obtains a comparator which can be used to sort the rows in this section.
getRowComparator() - Method in class org.protege.editor.owl.ui.frame.OWLGeneralClassAxiomsFrameSection
 
getRowComparator() - Method in class org.protege.editor.owl.ui.frame.OWLImportsDeclarationFrameSection
Obtains a comparator which can be used to sort the rows in this section.
getRowComparator() - Method in class org.protege.editor.owl.ui.frame.OWLIndirectImportsFrameSection
 
getRowComparator() - Method in class org.protege.editor.owl.ui.frame.OWLInverseObjectPropertiesAxiomFrameSection
Obtains a comparator which can be used to sort the rows in this section.
getRowComparator() - Method in class org.protege.editor.owl.ui.frame.OWLNegativeDataPropertyAssertionFrameSection
Obtains a comparator which can be used to sort the rows in this section.
getRowComparator() - Method in class org.protege.editor.owl.ui.frame.OWLNegativeObjectPropertyAssertionFrameSection
Obtains a comparator which can be used to sort the rows in this section.
getRowComparator() - Method in class org.protege.editor.owl.ui.frame.OWLObjectPropertyAssertionAxiomFrameSection
Obtains a comparator which can be used to sort the rows in this section.
getRowComparator() - Method in class org.protege.editor.owl.ui.frame.OWLObjectPropertyRangeFrameSection
Obtains a comparator which can be used to sort the rows in this section.
getRowComparator() - Method in class org.protege.editor.owl.ui.frame.OWLOntologyAnnotationAxiomFrameSection
Obtains a comparator which can be used to sort the rows in this section.
getRowComparator() - Method in class org.protege.editor.owl.ui.frame.OWLPropertyChainAxiomFrameSection
Obtains a comparator which can be used to sort the rows in this section.
getRowComparator() - Method in class org.protege.editor.owl.ui.frame.OWLSameIndividualsAxiomFrameSection
Obtains a comparator which can be used to sort the rows in this section.
getRowComparator() - Method in class org.protege.editor.owl.ui.frame.OWLSubClassAxiomFrameSection
Obtains a comparator which can be used to sort the rows in this section.
getRowComparator() - Method in class org.protege.editor.owl.ui.frame.OWLSubDataPropertyAxiomSuperPropertyFrameSection
 
getRowComparator() - Method in class org.protege.editor.owl.ui.frame.OWLSubObjectPropertyAxiomSuperPropertyFrameSection
Obtains a comparator which can be used to sort the rows in this section.
getRowComparator() - Method in class org.protege.editor.owl.ui.frame.property.AbstractPropertyDomainFrameSection
 
getRowComparator() - Method in class org.protege.editor.owl.ui.frame.SWRLRulesFrameSection
 
getRowCount() - Method in class org.protege.editor.core.ui.about.PluginInfoTableModel
 
getRowCount() - Method in class org.protege.editor.core.ui.RepositoryTableModel
 
getRowCount() - Method in class org.protege.editor.owl.ui.metrics.MetricsTableModel
 
getRowCount() - Method in class org.protege.editor.owl.ui.ontology.location.PhysicalLocationTableModel
 
getRowCount() - Method in class org.protege.editor.owl.ui.prefix.PrefixMapperTableModel
 
getRowIndex(OWLFrameSectionRow) - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSection
Gets the index of the specified section row.
getRowIndex(OWLFrameSectionRow) - Method in interface org.protege.editor.owl.ui.frame.OWLFrameSection
Gets the index of the specified section row.
getRowLabel(OWLFrameSectionRow) - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSection
 
getRowLabel(OWLFrameSectionRow) - Method in interface org.protege.editor.owl.ui.frame.OWLFrameSection
 
getRowName(Object) - Method in class org.protege.editor.core.ui.list.MList
 
getRowName(Object) - Method in class org.protege.editor.owl.ui.framelist.OWLFrameList2
 
getRowObject() - Method in class org.protege.editor.core.ui.list.MListButton
 
getRowObject() - Method in class org.protege.editor.owl.ui.frame.OWLDataPropertyAssertionAxiomFrameSectionRow
Gets the object which is presented to the use.
getRowObjectClass() - Method in class org.protege.editor.owl.ui.frame.OWLDataPropertyAssertionAxiomFrameSectionRow
Gets the class of the object - this determines the editor to use to edit the object
getRows() - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSection
Gets the rows that this section contains.
getRows() - Method in interface org.protege.editor.owl.ui.frame.OWLFrameSection
Gets the rows that this section contains.
getRunningTasks() - Method in class org.protege.editor.core.ui.progress.BackgroundTaskManager
 
getSaveLocation() - Method in class org.protege.editor.owl.ui.GatherOntologiesPanel
 
getScale() - Method in class uk.ac.man.cs.mig.coode.owlviz.export.DotExportFormat
If the export format supports scaling, this method can be used to obtain the scaling applied to the export.
getScale() - Method in interface uk.ac.man.cs.mig.util.graph.export.ExportFormat
If the export format supports scaling, this method can be used to obtain the scaling applied to the export.
getScale() - Method in class uk.ac.man.cs.mig.util.graph.export.impl.AbstractRasterFormat
If the export format supports scaling, this method can be used to obtain the scaling applied to the export.
getScale() - Method in class uk.ac.man.cs.mig.util.graph.export.impl.AbstractVectorFormat
If the export format supports scaling, this method can be used to obtain the scaling applied to the export.
getScrollableTracksViewportWidth() - Method in class org.protege.editor.core.ui.list.MList
 
getSearchDelay() - Method in class org.protege.editor.owl.model.find.EntityFinderPreferences
 
getSectionButtons(MListSectionHeader) - Method in class org.protege.editor.core.ui.list.MList
 
getSectionCount() - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrame
 
getSelectedClass() - Method in class org.protege.editor.owl.ui.clshierarchy.AbstractOWLClassHierarchyViewComponent
 
getSelectedClass() - Method in class org.protege.editor.owl.ui.selector.OWLClassSelectorPanel
Deprecated. Use getSelectedObject()
getSelectedClass() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizSelectionModel
 
getSelectedClasses() - Method in class org.protege.editor.owl.ui.clshierarchy.AbstractOWLClassHierarchyViewComponent
 
getSelectedClasses() - Method in class org.protege.editor.owl.ui.selector.OWLClassSelectorPanel
Deprecated. Use getSelectedObjects
getSelectedDataProperty() - Method in class org.protege.editor.owl.ui.selector.OWLDataPropertySelectorPanel
Deprecated. Use getSelectedObject
getSelectedEntities() - Method in class org.protege.editor.owl.ui.rename.RenameEntitiesPanel
 
getSelectedEntity() - Method in interface org.protege.editor.owl.model.selection.OWLSelectionModel
Gets the last selected entity.
getSelectedEntity() - Method in class org.protege.editor.owl.model.selection.OWLSelectionModelImpl
 
getSelectedEntity() - Method in class org.protege.editor.owl.ui.action.SelectedOWLEntityAction
 
getSelectedEntity() - Method in class org.protege.editor.owl.ui.find.OWLEntityFindPanel
 
getSelectedEntry() - Method in class org.protege.editor.core.ui.RepositoryTable
 
getSelectedExportFormat() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.exportwizard.SelectFormatPage
Retrieves the selected export format (the format that is selected in the combobox)
getSelectedFormat() - Method in class org.protege.editor.owl.ui.OntologyFormatPanel
 
getSelectedFrameSectionRows() - Method in class org.protege.editor.owl.ui.framelist.ExplanationFrameList
 
getSelectedGraphComponent() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.exportwizard.SpecifyHierarchyPage
 
getSelectedIndividual() - Method in class org.protege.editor.owl.ui.OWLIndividualListComponent
 
getSelectedIndividual() - Method in class org.protege.editor.owl.ui.selector.OWLIndividualSelectorPanel
Deprecated. Use getSelectedObject
getSelectedIndividual() - Method in class org.protege.editor.owl.ui.view.OWLIndividualListViewComponent
 
getSelectedIndividuals() - Method in class org.protege.editor.owl.ui.OWLIndividualListComponent
 
getSelectedIndividuals() - Method in class org.protege.editor.owl.ui.selector.OWLIndividualSelectorPanel
Deprecated. Use getSelectedObjects
getSelectedIndividuals() - Method in class org.protege.editor.owl.ui.view.OWLIndividualListViewComponent
 
getSelectedKit() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.MoveAxiomsWizard
 
getSelectedObject() - Method in class org.protege.editor.core.ui.list.RemovableObjectList
 
getSelectedObject() - Method in interface org.protege.editor.owl.model.selection.OWLSelectionModel
 
getSelectedObject() - Method in class org.protege.editor.owl.model.selection.OWLSelectionModelImpl
 
getSelectedObject() - Method in class org.protege.editor.owl.ui.list.OWLObjectListPanel
 
getSelectedObject() - Method in class org.protege.editor.owl.ui.selector.AbstractSelectorPanel
 
getSelectedObject() - Method in class org.protege.editor.owl.ui.selector.OWLClassSelectorPanel
 
getSelectedObject() - Method in class org.protege.editor.owl.ui.selector.OWLDataPropertySelectorPanel
 
getSelectedObject() - Method in class org.protege.editor.owl.ui.selector.OWLDataTypeSelectorPanel
 
getSelectedObject() - Method in class org.protege.editor.owl.ui.selector.OWLEntitySelectorPanel
 
getSelectedObject() - Method in class org.protege.editor.owl.ui.selector.OWLIndividualSelectorPanel
 
getSelectedObject() - Method in class org.protege.editor.owl.ui.selector.OWLObjectPropertySelectorPanel
 
getSelectedObject() - Method in interface org.protege.editor.owl.ui.selector.OWLObjectSelector
 
getSelectedObject() - Method in interface uk.ac.man.cs.mig.util.graph.controller.GraphSelectionModel
Gets the first selected Object.
getSelectedObject() - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultGraphSelectionModel
Gets the first selected Object.
getSelectedObject() - Method in class uk.ac.man.cs.mig.util.graph.ui.GraphComponent
 
getSelectedObjects() - Method in class org.protege.editor.core.ui.list.RemovableObjectList
 
getSelectedObjects() - Method in class org.protege.editor.owl.ui.selector.AbstractSelectorPanel
 
getSelectedObjects() - Method in class org.protege.editor.owl.ui.selector.OWLClassSelectorPanel
 
getSelectedObjects() - Method in class org.protege.editor.owl.ui.selector.OWLDataPropertySelectorPanel
 
getSelectedObjects() - Method in class org.protege.editor.owl.ui.selector.OWLDataTypeSelectorPanel
 
getSelectedObjects() - Method in class org.protege.editor.owl.ui.selector.OWLEntitySelectorPanel
 
getSelectedObjects() - Method in class org.protege.editor.owl.ui.selector.OWLIndividualSelectorPanel
 
getSelectedObjects() - Method in class org.protege.editor.owl.ui.selector.OWLObjectPropertySelectorPanel
 
getSelectedObjects() - Method in interface org.protege.editor.owl.ui.selector.OWLObjectSelector
 
getSelectedObjects() - Method in class org.protege.editor.owl.ui.transfer.OWLObjectDragGestureListener
 
getSelectedObjects() - Method in class org.protege.editor.owl.ui.transfer.OWLObjectListDragGestureListener
 
getSelectedObjects() - Method in class org.protege.editor.owl.ui.transfer.OWLObjectTreeDragGestureListener
 
getSelectedObjects() - Method in interface uk.ac.man.cs.mig.util.graph.controller.GraphSelectionModel
Retrieves an array of the selected Objects.
getSelectedObjects() - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultGraphSelectionModel
Retrieves an array of the selected Objects.
getSelectedObjects() - Method in class uk.ac.man.cs.mig.util.graph.ui.GraphComponent
 
getSelectedOntologies() - Method in class org.protege.editor.owl.ui.ontology.location.PhysicalLocationPanel
 
getSelectedOntologies() - Method in class org.protege.editor.owl.ui.selector.OWLOntologySelectorPanel
 
getSelectedOntologies() - Method in class org.protege.editor.owl.ui.selector.OWLOntologySelectorPanel2
 
getSelectedOntology() - Method in class org.protege.editor.owl.ui.selector.OWLOntologySelectorPanel
 
getSelectedOntologyURI() - Method in class org.protege.editor.core.ui.RepositoryTable
 
getSelectedOntologyURI() - Method in class org.protege.editor.owl.ui.ontology.imports.wizard.LibraryOntologiesList
 
getSelectedOWLClass() - Method in class org.protege.editor.owl.ui.clshierarchy.AbstractOWLClassTreeAction
A convenience method that gets the first selected OWLClass
getSelectedOWLClass() - Method in class org.protege.editor.owl.ui.view.AbstractOWLClassViewComponent
A convenience method.
getSelectedOWLDataProperties() - Method in class org.protege.editor.owl.ui.selector.OWLDataPropertySelectorPanel
Deprecated. Use getSelectedObjects
getSelectedOWLIndividual() - Method in class org.protege.editor.owl.ui.view.AbstractOWLIndividualViewComponent
 
getSelectedOWLObject() - Method in class org.protege.editor.owl.ui.tree.OWLObjectTree
 
getSelectedOWLObjectProperties() - Method in class org.protege.editor.owl.ui.selector.OWLObjectPropertySelectorPanel
Deprecated. Use getSelectedObjects
getSelectedOWLObjectProperty() - Method in class org.protege.editor.owl.ui.selector.OWLObjectPropertySelectorPanel
Deprecated. Use getSelectedObject
getSelectedOWLObjects() - Method in class org.protege.editor.owl.ui.list.OWLObjectList
 
getSelectedOWLObjects() - Method in class org.protege.editor.owl.ui.tree.OWLObjectTree
 
getSelectedPanel() - Method in class org.protege.editor.core.ui.preferences.PreferencesDialogPanel
 
getSelectedProperties() - Method in class org.protege.editor.owl.ui.view.AbstractOWLPropertyHierarchyViewComponent
 
getSelectedProperty() - Method in class org.protege.editor.owl.ui.view.AbstractOWLPropertyHierarchyViewComponent
 
getSelectedRendererClass() - Method in class org.protege.editor.owl.ui.renderer.RendererPreferencesPanel
 
getSelectedRows() - Method in class org.protege.editor.owl.ui.framelist.OWLFrameListPopupMenuAction
 
getSelectedTab() - Method in class org.protege.editor.core.ui.workspace.TabbedWorkspace
 
getSelectedTabPadInsets(int) - Method in class org.protege.editor.core.ui.tabbedpane.ViewTabbedPaneUI
 
getSelectedUpdateInfo() - Method in class org.protege.editor.core.update.PluginTable
 
getSelectedURI() - Method in class org.protege.editor.owl.ui.frame.AnnotationURIList
 
getSelectedURIs() - Method in class org.protege.editor.owl.ui.frame.AnnotationURIList
 
getSelectedValue() - Method in class org.protege.editor.core.ui.list.RemovableObjectList
 
getSelection() - Method in interface org.protege.editor.core.ui.util.SelectionProvider
 
getSelection() - Method in class org.protege.editor.owl.ui.OWLEntitySelectorPanel
 
getSelectionModel() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizView
 
getSelectionModel() - Method in interface uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizViewI
 
getSelectionPath() - Method in class org.protege.editor.owl.ui.clshierarchy.AbstractOWLClassTreeAction
 
getSelectionProvider() - Method in class org.protege.editor.core.ui.view.ViewComponent
 
getShape() - Method in interface uk.ac.man.cs.mig.util.graph.graph.Edge
Gets the Shape that represents the Edge.
getShape() - Method in interface uk.ac.man.cs.mig.util.graph.graph.Graph
Gets the shape that isShown all of the Nodes and Edges belonging to the Graph.
getShape() - Method in class uk.ac.man.cs.mig.util.graph.graph.impl.DefaultEdge
Gets the Shape that represents the Edge.
getShape() - Method in class uk.ac.man.cs.mig.util.graph.graph.impl.DefaultGraph
Gets the shape that isShown all of the Nodes and Edges belonging to the Graph.
getShape() - Method in class uk.ac.man.cs.mig.util.graph.graph.impl.DefaultNode
Returns the Shape of the Node.
getShape() - Method in class uk.ac.man.cs.mig.util.graph.graph.impl.EllipticalNode
Returns the Shape of the Node.
getShape() - Method in class uk.ac.man.cs.mig.util.graph.graph.impl.TriangularNode
Returns the Shape of the Node.
getShape() - Method in interface uk.ac.man.cs.mig.util.graph.graph.Node
Returns the Shape of the Node.
getShortForm(URI) - Method in interface org.protege.editor.owl.ui.prefix.PrefixMapper
 
getShortForm(URI) - Method in class org.protege.editor.owl.ui.prefix.PrefixMapperImpl
 
getSiblingSpacing() - Method in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.DotLayoutEngineProperties
 
getSignature() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.byreference.MoveAxiomsByReferenceKit
 
getSignature() - Method in interface org.protege.editor.owl.ui.ontology.wizard.move.common.SignatureSelection
 
getSize() - Method in class uk.ac.man.cs.mig.util.graph.graph.impl.DefaultNode
Gets the size of the Node.
getSize() - Method in class uk.ac.man.cs.mig.util.graph.graph.impl.EllipticalNode
Gets the size of the Node.
getSize() - Method in class uk.ac.man.cs.mig.util.graph.graph.impl.TriangularNode
Gets the size of the Node.
getSize() - Method in interface uk.ac.man.cs.mig.util.graph.graph.Node
Gets the size of the Node.
getSomeKeyWord() - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererDLSyntax
 
getSomeKeyWord() - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
getSource() - Method in class org.protege.editor.owl.model.event.OWLModelManagerChangeEvent
 
getSource() - Method in class uk.ac.man.cs.mig.util.graph.event.GraphGeneratorEvent
Retrieves the source of the event.
getSource() - Method in class uk.ac.man.cs.mig.util.graph.event.GraphModelEvent
Retrieves the event source.
getSource() - Method in class uk.ac.man.cs.mig.util.graph.event.GraphSelectionModelEvent
Gets the source of the event.
getSource() - Method in class uk.ac.man.cs.mig.util.graph.event.ThumbnailViewSourceEvent
Gets the source of the event.
getSource() - Method in class uk.ac.man.cs.mig.util.graph.event.VisualisedObjectManagerEvent
Gets the source of the event.
getSource() - Method in class uk.ac.man.cs.mig.util.popup.PopupComponentEvent
 
getSource() - Method in class uk.ac.man.cs.mig.util.wizard.WizardEvent
Gets the source of the Wizard event.
getSourceOntologies() - Method in interface org.protege.editor.owl.ui.ontology.wizard.move.MoveAxiomsModel
 
getSourceOntologies() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.MoveAxiomsWizard
 
getStartIndex() - Method in exception org.protege.editor.owl.model.description.OWLExpressionParserException
 
getStrategy() - Method in class org.protege.editor.owl.ui.action.AbstractOntologySelectionStrategyAction
 
getStrategy() - Method in class org.protege.editor.owl.ui.action.ActiveOntologyStrategyAction
 
getStrategy() - Method in class org.protege.editor.owl.ui.action.AllOntologiesStrategyAction
 
getStrategy() - Method in class org.protege.editor.owl.ui.action.ImportsClosureOntologyStrategyAction
 
getStrategy() - Method in class org.protege.editor.owl.ui.action.VisibilityManagerOntologySelectionStrategyAction
 
getString(String) - Method in class org.protege.editor.core.editorkit.EditorKitDescriptor
 
getString(String, String) - Method in class org.protege.editor.core.prefs.JavaBackedPreferencesImpl
 
getString(String, String) - Method in interface org.protege.editor.core.prefs.Preferences
 
getString(String) - Method in class org.protege.editor.owl.model.library.OntologyLibraryMemento
 
getString(Object) - Method in class org.protege.editor.owl.ProtegeOWLProperties
 
getStringList(String, List<String>) - Method in class org.protege.editor.core.prefs.JavaBackedPreferencesImpl
 
getStringList(String, List<String>) - Method in interface org.protege.editor.core.prefs.Preferences
 
getSubClassAxiomSymbol() - Method in class org.protege.editor.owl.ui.frame.ExplanationFrame
 
getSubClasses(OWLDescription) - Method in class org.protege.editor.owl.model.inference.NoOpReasoner
 
getSubject() - Method in class org.protege.editor.owl.ui.frame.OWLAxiomAnnotationsRoot
 
getSubProperties(OWLObjectProperty) - Method in class org.protege.editor.owl.model.inference.NoOpReasoner
 
getSubProperties(OWLDataProperty) - Method in class org.protege.editor.owl.model.inference.NoOpReasoner
 
getSubPropertyAxiomForRHS(P, OWLOntology) - Method in class org.protege.editor.owl.model.hierarchy.AbstractOWLPropertyHierarchyProvider
 
getSubPropertyAxiomForRHS(OWLDataProperty, OWLOntology) - Method in class org.protege.editor.owl.model.hierarchy.OWLDataPropertyHierarchyProvider
 
getSubPropertyAxiomForRHS(OWLObjectProperty, OWLOntology) - Method in class org.protege.editor.owl.model.hierarchy.OWLObjectPropertyHierarchyProvider
 
getSuffix(Class<? extends OWLEntity>) - Method in class org.protege.editor.owl.model.entity.AbstractIDGenerator
 
getSuffix() - Static method in class org.protege.editor.owl.model.entity.EntityCreationPreferences
 
getSuffix() - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSectionRow
 
getSuffix() - Method in class org.protege.editor.owl.ui.hierarchy.creation.CreateClassHierarchyWizard
 
getSuffix() - Method in class org.protege.editor.owl.ui.hierarchy.creation.TabIndentedHierarchyPanel
 
GetSuffix(int) - Method in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.SimpleCharStream
 
getSuperClasses(OWLDescription) - Method in class org.protege.editor.owl.model.inference.NoOpReasoner
 
getSuperProperties(OWLObjectProperty) - Method in class org.protege.editor.owl.model.inference.NoOpReasoner
 
getSuperProperties(OWLDataProperty) - Method in class org.protege.editor.owl.model.inference.NoOpReasoner
 
getSupersSubsOption() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.ClassRadiusDialog
 
getSupersSubsOption() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.ClassRadiusDialogPage
 
getSWRLChecker() - Method in class org.protege.editor.owl.ui.clsdescriptioneditor.ManchesterOWLExpressionCheckerFactory
 
getSWRLChecker() - Method in interface org.protege.editor.owl.ui.clsdescriptioneditor.OWLExpressionCheckerFactory
 
getSyntax(InputStream) - Method in class org.protege.editor.owl.model.io.SyntaxGuesser
 
getTab(String) - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.options.OptionsDialog
 
getTab(String) - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.options.OWLVizPreferencesPane
 
getTabAreaInsets(int) - Method in class org.protege.editor.core.ui.tabbedpane.ViewTabbedPaneUI
 
getTabbedPane() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizView
 
getTabBounds(JTabbedPane, int) - Method in class org.protege.editor.core.ui.tabbedpane.ViewTabbedPaneUI
Returns the bounds of the specified tab index.
getTabCount() - Method in class org.protege.editor.core.ui.workspace.TabbedWorkspace
 
getTabInsets(int, int) - Method in class org.protege.editor.core.ui.tabbedpane.ViewTabbedPaneUI
 
getTabLabelShiftX(int, int, boolean) - Method in class org.protege.editor.core.ui.tabbedpane.ViewTabbedPaneUI
 
getTabLabelShiftY(int, int, boolean) - Method in class org.protege.editor.core.ui.tabbedpane.ViewTabbedPaneUI
 
getTableCellEditorComponent(JTable, Object, boolean, int, int) - Method in class org.protege.editor.owl.ui.prefix.PrefixTableCellEditor
 
getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class org.protege.editor.owl.ui.renderer.OWLCellRenderer
 
getTabs() - Method in class org.protege.editor.core.ui.workspace.TabbedWorkspaceStateManager
 
getTabs() - Method in class org.protege.editor.owl.ui.error.ErrorPanel
 
getTabSize(int) - Method in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.SimpleCharStream
 
getTailNode() - Method in interface uk.ac.man.cs.mig.util.graph.graph.Edge
Returns the node that the tail of the edge is connected to.
getTailNode() - Method in class uk.ac.man.cs.mig.util.graph.graph.impl.DefaultEdge
Returns the node that the tail of the edge is connected to.
getTargetOntologyURI() - Method in interface org.protege.editor.owl.ui.ontology.wizard.move.MoveAxiomsModel
 
getTargetOntologyURI() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.MoveAxiomsWizard
 
getTerminalElements() - Method in class org.protege.editor.owl.model.hierarchy.roots.TerminalElementFinder
 
getText() - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererDLSyntax
 
getText() - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
getTextColor(Object) - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.renderer.OWLClsNodeRenderer
 
getThrowable() - Method in class org.protege.editor.core.ui.error.ErrorLog.ErrorLogEntry
 
getTimeStamp() - Method in class org.protege.editor.core.ui.error.ErrorLog.ErrorLogEntry
 
getTitle() - Method in class org.protege.editor.core.ui.wizard.Wizard
Returns the current title of the generated dialog.
getTitle() - Method in class org.protege.editor.core.ui.workspace.Workspace
 
getTitle() - Method in class org.protege.editor.owl.model.OWLWorkspace
 
getTitle() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.byannotation.AnnotationSelectorPanel
 
getTitle() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.byprofile.ProfileSelectorPanel
 
getTitle() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.byreference.SelectSignaturePanel
 
getTitle() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.bytype.AxiomTypeSelectorPanel
 
getTitle() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.common.SignatureDependentSelectionPreviewPanel
 
getTitle() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.MoveAxiomsKitConfigurationPanel
 
getTitle() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.SelectAxiomsPanel
 
getTitle() - Method in class org.protege.editor.owl.ui.selector.OWLEntitySelectorPanel
 
getToken(int) - Method in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.DotParser
 
getToolBar() - Method in class org.protege.editor.core.ui.toolbar.MainToolBarBuilder
 
getTooltip() - Method in class org.coode.dlquery.DLQueryResultsSectionItem
 
getTooltip() - Method in class org.protege.editor.core.ui.list.MList.TestItem
 
getTooltip() - Method in interface org.protege.editor.core.ui.list.MListItem
 
getTooltip() - Method in class org.protege.editor.core.ui.list.RemovableObjectList.RemovableObjectListItem
 
getTooltip() - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSectionRow
 
getTooltip() - Method in class org.protege.editor.owl.ui.frame.AnnotationURIList.URIItem
 
getTooltip() - Method in class org.protege.editor.owl.ui.frame.InheritedAnonymousClassesFrameSectionRow
 
getToolTipText() - Method in interface org.protege.editor.core.ui.action.ProtegeActionPlugin
Gets the tooltip text for the action.
getToolTipText() - Method in class org.protege.editor.core.ui.action.ProtegeActionPluginJPFImpl
Gets the tooltip text for the action.
getToolTipText(MouseEvent) - Method in class org.protege.editor.core.ui.list.MList
 
getToolTipText() - Method in class org.protege.editor.core.ui.progress.BackgroundTaskLabel
 
getToolTipText(MouseEvent) - Method in class org.protege.editor.owl.ui.list.OWLObjectList
 
getToolTipText(MouseEvent) - Method in class org.protege.editor.owl.ui.tree.OWLObjectTree
 
getTrackerRadius() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.options.ModeOptionsPanel
 
getTrackerRadius() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.options.OWLVizViewOptions
 
getTransferData(DataFlavor) - Method in class org.protege.editor.owl.ui.transfer.TransferableOWLObject
 
getTransferDataFlavors() - Method in class org.protege.editor.owl.ui.transfer.TransferableOWLObject
 
getTree() - Method in class org.protege.editor.owl.ui.clshierarchy.AbstractOWLClassHierarchyViewComponent
 
getTree() - Method in class org.protege.editor.owl.ui.view.AbstractOWLPropertyHierarchyViewComponent
 
getTreeCellRendererComponent(JTree, Object, boolean, boolean, boolean, int, boolean) - Method in class org.protege.editor.owl.ui.library.OntologyLibraryPanel.OntologyLibraryCellRenderer
 
getTreeCellRendererComponent(JTree, Object, boolean, boolean, boolean, int, boolean) - Method in class org.protege.editor.owl.ui.renderer.OWLCellRenderer
 
getTreeCellRendererComponent(JTree, Object, boolean, boolean, boolean, int, boolean) - Method in class org.protege.editor.owl.ui.renderer.OWLCellRendererSimple
 
getTreeCellRendererComponent(JTree, Object, boolean, boolean, boolean, int, boolean) - Method in class org.protege.editor.owl.ui.tree.OWLObjectTreeCellRenderer
 
getType() - Method in class org.protege.editor.owl.model.event.OWLModelManagerChangeEvent
 
getType() - Method in class org.protege.editor.owl.model.selection.axioms.ClassReferencingAxiomsStrategy
 
getType() - Method in class org.protege.editor.owl.model.selection.axioms.DataPropertyReferencingAxiomStrategy
 
getType() - Method in class org.protege.editor.owl.model.selection.axioms.EntityReferencingAxiomsStrategy
 
getType() - Method in class org.protege.editor.owl.model.selection.axioms.IndividualReferencingAxiomStrategy
 
getType() - Method in class org.protege.editor.owl.model.selection.axioms.ObjectPropertyReferencingAxiomStrategy
 
getTypes(OWLIndividual, boolean) - Method in class org.protege.editor.owl.model.inference.NoOpReasoner
 
getTypes() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.byannotation.MoveAnnotationAxiomsByURIKit
 
getTypes() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.bytype.MoveAxiomsByTypeKit
 
getUnfilteredAxioms(Set<OWLOntology>) - Method in class org.protege.editor.owl.ui.ontology.wizard.move.byannotation.MoveAnnotationAxiomsByURIKit
 
getUnfilteredAxioms(Set<OWLOntology>) - Method in class org.protege.editor.owl.ui.ontology.wizard.move.bytype.MoveAxiomsByTypeKit
 
getUnfilteredAxioms(Set<OWLOntology>) - Method in interface org.protege.editor.owl.ui.ontology.wizard.move.FilteredAxiomsModel
 
getUpdatesProvider() - Method in class org.protege.editor.core.update.PluginManager
 
getURI(String) - Method in class org.protege.editor.core.editorkit.EditorKitDescriptor
 
getURI() - Method in class org.protege.editor.core.ui.OpenFromURIPanel
 
getURI() - Method in class org.protege.editor.core.ui.util.FileURIPanel
 
getURI() - Method in class org.protege.editor.owl.model.entity.CustomLabelDescriptor
 
getURI() - Method in interface org.protege.editor.owl.model.entity.LabelDescriptor
 
getURI() - Method in class org.protege.editor.owl.model.entity.MatchRendererLabelDescriptor
 
getURI(String) - Method in class org.protege.editor.owl.model.hierarchy.tabbed.AbstractOWLObjectHierarchyCreator
 
getURI(String) - Method in class org.protege.editor.owl.model.library.OntologyLibraryMemento
 
getURI() - Method in class org.protege.editor.owl.ui.ontology.wizard.create.OntologyURIPanel
 
getURI() - Method in class org.protege.editor.owl.ui.rename.RenameEntityPanel
 
getURI(String, String) - Method in class org.protege.editor.owl.ui.UIHelper
 
getURIForActiveOntology(String, String) - Method in class org.protege.editor.owl.ui.UIHelper
Gets a URI whose base is the URI of the active ontology.
getURIForActiveOntology(String, String, String) - Method in class org.protege.editor.owl.ui.UIHelper
 
getURIRendering(URI) - Method in interface org.protege.editor.owl.model.OWLModelManager
Get a human readable version of the URI
getURIRendering(URI) - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
 
getURL() - Method in class org.protege.editor.core.ui.menu.MenuActionPluginJPFImpl
 
getURL() - Method in class org.protege.editor.core.ui.util.URLPanel
 
getURL(String) - Method in class org.protege.editor.owl.model.library.OntologyLibraryMemento
 
getUserObject() - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSectionRow
Default implementation which returns null
getUserObject() - Method in interface org.protege.editor.owl.ui.frame.OWLFrameSectionRow
Gets a user object.
getUserObject() - Method in interface uk.ac.man.cs.mig.util.graph.graph.Edge
Gets the userObject, previously set with setUserObject(Object o)
getUserObject() - Method in class uk.ac.man.cs.mig.util.graph.graph.impl.DefaultEdge
Gets the userObject, previously set with setUserObject(Object o)
getUserObject() - Method in class uk.ac.man.cs.mig.util.graph.graph.impl.DefaultNode
Gets the userObject, previously set with setUserObject(Object o)
getUserObject() - Method in class uk.ac.man.cs.mig.util.graph.graph.impl.EllipticalNode
Gets the userObject, previously set with setUserObject(Object o)
getUserObject() - Method in class uk.ac.man.cs.mig.util.graph.graph.impl.TriangularNode
Gets the userObject, previously set with setUserObject(Object o)
getUserObject() - Method in interface uk.ac.man.cs.mig.util.graph.graph.Node
Gets the userObject, previously set with setUserObject(Object o)
getUserObject() - Method in class uk.ac.man.cs.mig.util.graph.model.impl.DefaultGraphNode
 
getUserObject() - Method in class uk.ac.man.cs.mig.util.wizard.Wizard
Gets the user object that can be associated with the Wizard.
getValue() - Method in class org.protege.editor.core.ui.preferences.node.BooleanPreferenceNode
 
getValue() - Method in interface org.protege.editor.core.ui.preferences.node.PreferenceNode
 
getValue() - Method in class org.protege.editor.core.ui.preferences.node.StringPreferenceNode
 
getValue() - Method in class org.protege.editor.owl.ui.frame.OWLConstantEditor
 
getValue(String) - Method in interface org.protege.editor.owl.ui.prefix.PrefixMapper
Gets a value that the specified prefix maps to.
getValue(String) - Method in class org.protege.editor.owl.ui.prefix.PrefixMapperImpl
 
getValueAt(int, int) - Method in class org.protege.editor.core.ui.about.PluginInfoTableModel
 
getValueAt(int, int) - Method in class org.protege.editor.core.ui.RepositoryTableModel
 
getValueAt(int, int) - Method in class org.protege.editor.owl.ui.metrics.MetricsTableModel
 
getValueAt(int, int) - Method in class org.protege.editor.owl.ui.ontology.location.PhysicalLocationTableModel
 
getValueAt(int, int) - Method in class org.protege.editor.owl.ui.prefix.PrefixMapperTableModel
 
getValueKeyWord() - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
getValues() - Method in interface org.protege.editor.owl.ui.prefix.PrefixMapper
Gets the set of all values for which there are prefixes.
getValues() - Method in class org.protege.editor.owl.ui.prefix.PrefixMapperImpl
 
getValueToRender(JList, Object, int, boolean, boolean) - Method in class org.protege.editor.owl.ui.framelist.OWLFrameListRenderer
 
getView() - Method in class org.protege.editor.core.ui.view.ViewAction
 
getView() - Method in interface org.protege.editor.core.ui.view.ViewActionPlugin
 
getView() - Method in class org.protege.editor.core.ui.view.ViewActionPluginJPFImpl
 
getView() - Method in class org.protege.editor.core.ui.view.ViewComponent
 
getView(String) - Method in class org.protege.editor.core.ui.view.ViewHolder
Gets hold of a View that is contained within the holder, that has a specified id.
getViewBanner() - Method in class org.protege.editor.core.ui.view.ViewBar
 
getViewBar() - Method in class org.protege.editor.core.ui.view.ViewBarComponent
 
getViewBounds() - Method in class uk.ac.man.cs.mig.util.graph.ui.GraphComponent
Should return the bounds of the main view.
getViewBounds() - Method in interface uk.ac.man.cs.mig.util.graph.ui.ThumbnailViewSource
Should return the bounds of the main view.
getViewComponent() - Method in class org.protege.editor.core.ui.view.View
Gets the component that actually displays the view.
getViewComponentPlugin(String) - Method in class org.protege.editor.core.ui.workspace.WorkspaceViewManager
 
getViewComponentPlugin() - Method in class org.protege.editor.owl.ui.selector.AbstractSelectorPanel
 
getViewComponentPlugin() - Method in class org.protege.editor.owl.ui.selector.OWLClassSelectorPanel
 
getViewComponentPlugin() - Method in class org.protege.editor.owl.ui.selector.OWLDataPropertySelectorPanel
 
getViewComponentPlugin() - Method in class org.protege.editor.owl.ui.selector.OWLDataTypeSelectorPanel
 
getViewComponentPlugin() - Method in class org.protege.editor.owl.ui.selector.OWLIndividualSelectorPanel
 
getViewComponentPlugin() - Method in class org.protege.editor.owl.ui.selector.OWLObjectPropertySelectorPanel
 
getViewComponentPlugins() - Method in class org.protege.editor.core.ui.workspace.WorkspaceViewManager
 
getViewConfigurationsFolder() - Static method in class org.protege.editor.core.FileManager
 
getViewId() - Method in class org.protege.editor.core.ui.view.ViewActionPluginJPFImpl
 
getViewLayoutPreferences() - Static method in class org.protege.editor.core.ui.view.ViewsPane
Gets the layout preferences set.
getViewManager() - Method in class org.protege.editor.core.ui.workspace.Workspace
 
getViewName() - Method in class org.protege.editor.core.ui.view.View
 
getViewPaneId() - Method in class org.protege.editor.core.ui.view.ViewsPaneMemento
 
getViews() - Method in class org.protege.editor.core.ui.view.ViewsPane
 
getViewsPane() - Method in class org.protege.editor.core.ui.workspace.WorkspaceViewsTab
 
getViewVisibleRect() - Method in class uk.ac.man.cs.mig.util.graph.ui.GraphComponent
Should return a Rectangle that represents the portion of the main view that is visible.
getViewVisibleRect() - Method in interface uk.ac.man.cs.mig.util.graph.ui.ThumbnailViewSource
Should return a Rectangle that represents the portion of the main view that is visible.
getVisibilityManager() - Method in class org.protege.editor.owl.ui.action.VisibilityManagerOntologySelectionStrategyAction
 
getVisibleOntologies() - Method in interface org.protege.editor.owl.model.OntologyVisibilityManager
 
getVisibleOntologies() - Method in class org.protege.editor.owl.model.OntologyVisibilityManagerImpl
 
getVisualisedObjectManager() - Method in interface uk.ac.man.cs.mig.util.graph.controller.Controller
Returns the VisualisedObjectManager which is responsible for keeping track of the objects being visualised (and hence contained in the Graph).
getVisualisedObjectManager() - Method in interface uk.ac.man.cs.mig.util.graph.controller.GraphGenerator
Retrieves the VisualisedObjectManager, which graphs are based upon.
getVisualisedObjectManager() - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultController
Returns the VisualisedObjectManager which is responsible for keeping track of the objects being visualised (and hence contained in the Graph).
getVisualisedObjectManager() - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultGraphGenerator
Retrieves the VisualisedObjectManager, which graphs are based upon.
getVisualisedObjectManager() - Method in class uk.ac.man.cs.mig.util.graph.ui.GraphComponent
 
getVisualisedObjectManagerListeners() - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultVisualisedObjectManager
Gets an iterator that can be used to traverse the list of listeners.
getVisualisedObjectManagerListeners() - Method in interface uk.ac.man.cs.mig.util.graph.controller.VisualisedObjectManager
Gets an iterator that can be used to traverse the list of listeners.
getVisualisedObjects() - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultVisualisedObjectManager
Gets all of the objects that are being visualised.
getVisualisedObjects() - Method in interface uk.ac.man.cs.mig.util.graph.controller.VisualisedObjectManager
Gets all of the objects that are being visualised.
getWizard() - Method in class org.protege.editor.core.ui.wizard.WizardPanel
Returns a reference to the Wizard component.
getWizard() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.AbstractMoveAxiomsWizardPanel
Gets the MoveAxiomsWizard
getWizard() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.MoveAxiomsKitConfigurationPanel
 
getWizard() - Method in class uk.ac.man.cs.mig.util.wizard.WizardPage
Gets the Wizard that this page belongs to.
getWizardModel() - Method in class org.protege.editor.core.ui.wizard.WizardPanel
Returns a reference to the current WizardModel for this Wizard component.
getWorkspace() - Method in interface org.protege.editor.core.editorkit.EditorKit
Gets the Workspace that is used in the UI to display the contents of the clsdescriptioneditor kit "model".
getWorkspace() - Method in class org.protege.editor.core.ui.action.ProtegeAction
 
getWorkspace() - Method in class org.protege.editor.core.ui.view.ViewComponent
 
getWorkspace() - Method in interface org.protege.editor.core.ui.view.ViewComponentPlugin
 
getWorkspace() - Method in class org.protege.editor.core.ui.view.ViewComponentPluginJPFImpl
 
getWorkspace() - Method in class org.protege.editor.core.ui.workspace.CustomWorkspaceTabsManager.CustomTabPlugin
 
getWorkspace() - Method in class org.protege.editor.core.ui.workspace.WorkspaceTab
Gets this tab's Workspace, which can be used to access the EditorKit.
getWorkspace() - Method in interface org.protege.editor.core.ui.workspace.WorkspaceTabPlugin
Gets the workspace that this plugin creates tabs for.
getWorkspace() - Method in class org.protege.editor.core.ui.workspace.WorkspaceTabPluginJPFImpl
Gets the workspace that this plugin creates tabs for.
getWorkspace() - Method in class org.protege.editor.owl.OWLEditorKit
Gets the Workspace that is used in the UI to display the contents of the clsdescriptioneditor kit "model".
getWorkspaceManager() - Method in class org.protege.editor.core.editorkit.EditorKitManager
Gets the WorkspaceManager that corresponds to this EditorKitManager.
getWorkspaceTab(String) - Method in class org.protege.editor.core.ui.workspace.TabbedWorkspace
 
getWorkspaceTabs() - Method in class org.protege.editor.core.ui.workspace.TabbedWorkspace
 
getZoomLevel() - Method in class uk.ac.man.cs.mig.util.graph.ui.impl.DefaultGraphView
Gets the zoom level as a percentage.
getZoomLevel() - Method in interface uk.ac.man.cs.mig.util.graph.ui.Zoomable
Gets the zoom level as a percentage.
GlobalOptionsPage - Class in uk.ac.man.cs.mig.coode.owlviz.ui.options
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Dec 10, 2008

GlobalOptionsPage(OWLEditorKit) - Constructor for class uk.ac.man.cs.mig.coode.owlviz.ui.options.GlobalOptionsPage
 
goBack() - Method in interface org.protege.editor.owl.model.selection.OWLSelectionHistoryManager
 
goBack() - Method in class org.protege.editor.owl.model.selection.OWLSelectionHistoryManagerImpl
 
goForward() - Method in interface org.protege.editor.owl.model.selection.OWLSelectionHistoryManager
 
goForward() - Method in class org.protege.editor.owl.model.selection.OWLSelectionHistoryManagerImpl
 
Graph - Interface in uk.ac.man.cs.mig.util.graph.graph
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Dec 27, 2003

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

The interface for a Graph.
graph() - Method in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.DotParser
 
GRAPH_FACTORY_PROPERTY - Static variable in interface uk.ac.man.cs.mig.util.graph.controller.Controller
 
GRAPH_GENERATOR_PROPERTY - Static variable in interface uk.ac.man.cs.mig.util.graph.controller.Controller
 
GRAPH_LAYOUT_ENGINE_PROPERTY - Static variable in interface uk.ac.man.cs.mig.util.graph.controller.Controller
 
GRAPH_MODEL_PROPERTY - Static variable in interface uk.ac.man.cs.mig.util.graph.controller.Controller
Controller property names
GRAPH_SELECTION_MODEL_PROPERTY - Static variable in interface uk.ac.man.cs.mig.util.graph.controller.Controller
 
GRAPH_VIEW_PROPERTY - Static variable in interface uk.ac.man.cs.mig.util.graph.controller.Controller
 
graphChanged(GraphGeneratorEvent) - Method in interface uk.ac.man.cs.mig.util.graph.event.GraphGeneratorListener
Called when the Graph has been modified.
GraphComponent - Class in uk.ac.man.cs.mig.util.graph.ui
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Jan 29, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

GraphComponent() - Constructor for class uk.ac.man.cs.mig.util.graph.ui.GraphComponent
 
GraphComponent(String) - Constructor for class uk.ac.man.cs.mig.util.graph.ui.GraphComponent
 
GraphFactory - Interface in uk.ac.man.cs.mig.util.graph.factory
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Dec 27, 2003

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

Defines the interface required of a GraphFactory
GraphGenerator - Interface in uk.ac.man.cs.mig.util.graph.controller
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Dec 27, 2003

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

Creates/updates the graph containing visualised nodes and edges.
GraphGeneratorEvent - Class in uk.ac.man.cs.mig.util.graph.event
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Jan 14, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

GraphGeneratorEvent(GraphGenerator) - Constructor for class uk.ac.man.cs.mig.util.graph.event.GraphGeneratorEvent
Constructs a GraphGeneratorEvent with the specified event source.
GraphGeneratorListener - Interface in uk.ac.man.cs.mig.util.graph.event
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Jan 14, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

graphGenListener - Variable in class uk.ac.man.cs.mig.util.graph.ui.GraphView
 
GraphLayoutEngine - Interface in uk.ac.man.cs.mig.util.graph.layout
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Dec 27, 2003

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

GraphModel - Interface in uk.ac.man.cs.mig.util.graph.model
The GraphModel provides an interface to the data visualised by OWLViz, without assuming what the data is/represents.
GraphModelEvent - Class in uk.ac.man.cs.mig.util.graph.event
User: matthewhorridge The Univeristy Of Manchester Medical Informatics Group Date: Dec 27, 2003 matthew.horridge@cs.man.ac.uk www.cs.man.ac.uk/~horridgm The GraphModelEvent class isShown information associated with the various events/changes that can take place within the GraphModel.
GraphModelEvent(GraphModel, ArrayList) - Constructor for class uk.ac.man.cs.mig.util.graph.event.GraphModelEvent
 
GraphModelListener - Interface in uk.ac.man.cs.mig.util.graph.event
User: matthewhorridge The Univeristy Of Manchester Medical Informatics Group Date: Dec 27, 2003 matthew.horridge@cs.man.ac.uk www.cs.man.ac.uk/~horridgm An interface for GraphModelListeners.
GraphOutputRenderer - Interface in uk.ac.man.cs.mig.util.graph.outputrenderer
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Jan 16, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

A renderer is capable of rendering a Graph to an outputrenderer stream.
GraphSelectionModel - Interface in uk.ac.man.cs.mig.util.graph.controller
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Dec 29, 2003

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

Defines an interface for a selection model for a Graph.
GraphSelectionModelEvent - Class in uk.ac.man.cs.mig.util.graph.event
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Jan 26, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

GraphSelectionModelEvent(GraphSelectionModel) - Constructor for class uk.ac.man.cs.mig.util.graph.event.GraphSelectionModelEvent
Constructs a selection model event, using the specified GraphSelectionModel as the source for the event.
GraphSelectionModelListener - Interface in uk.ac.man.cs.mig.util.graph.event
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Jan 26, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

GraphView - Class in uk.ac.man.cs.mig.util.graph.ui
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Jan 12, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

The GraphView represents a view that paints the Graph containing the visualised Nodes and Egdes.

GraphView(Controller) - Constructor for class uk.ac.man.cs.mig.util.graph.ui.GraphView
 
graphViewListener - Variable in class uk.ac.man.cs.mig.util.graph.ui.GraphView
 
GROUP_CLASSES_BY_NAMESPACE - Static variable in class uk.ac.man.cs.mig.coode.owlviz.ui.options.OWLVizProperties
Deprecated. A String that represents a Boolean value that indicates whether or not classes should be grouped by namespace.
GROUP_INDEX_PARAM - Static variable in class org.protege.editor.core.ui.action.ToolBarActionPluginJPFImpl
 
GUTTER_WIDTH - Static variable in class org.protege.editor.core.ui.preferences.PreferencesPanelLayoutManager
 

H

handle(OWLReasonerException) - Method in class org.protege.editor.owl.model.inference.DefaultOWLReasonerExceptionHandler
 
handle(OWLReasonerException) - Method in interface org.protege.editor.owl.model.inference.OWLReasonerExceptionHandler
 
handle(OWLReasonerException) - Method in class org.protege.editor.owl.model.UIReasonerExceptionHandler
 
handleAboutRequest() - Method in class org.protege.editor.core.platform.apple.AbstractAppleApplicationWrapper
 
handleAboutRequest() - Method in class org.protege.editor.core.platform.apple.ProtegeAppleApplication
 
handleAdd() - Method in class org.protege.editor.core.ui.list.MList
 
handleAdd() - Method in class org.protege.editor.core.ui.list.MList.TestHeader
 
handleAdd() - Method in class org.protege.editor.owl.ui.frame.AnnotationURIList
 
handleAdd() - Method in class org.protege.editor.owl.ui.framelist.OWLFrameList2
 
handleChange(OWLModelManagerChangeEvent) - Method in interface org.protege.editor.owl.model.event.OWLModelManagerListener
 
handleChange(OWLModelManagerChangeEvent) - Method in class org.protege.editor.owl.model.inference.OWLReasonerManagerImpl
 
handleChanges(List<? extends OWLOntologyChange>) - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSection
 
handleChanges(List<? extends OWLOntologyChange>) - Method in class org.protege.editor.owl.ui.frame.AxiomListFrameSection
 
handleClose() - Method in class org.protege.editor.core.ProtegeApplication
 
handleDelete() - Method in class org.coode.dlquery.DLQueryResultsSectionItem
 
handleDelete() - Method in class org.protege.editor.core.ui.list.MList
 
handleDelete() - Method in class org.protege.editor.core.ui.list.MList.TestItem
 
handleDelete() - Method in interface org.protege.editor.core.ui.list.MListItem
 
handleDelete() - Method in class org.protege.editor.core.ui.list.RemovableObjectList
 
handleDelete() - Method in class org.protege.editor.core.ui.list.RemovableObjectList.RemovableObjectListItem
 
handleDelete() - Method in class org.protege.editor.owl.ui.clshierarchy.AbstractOWLClassHierarchyViewComponent
 
handleDelete() - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSectionRow
 
handleDelete() - Method in class org.protege.editor.owl.ui.frame.AnnotationURIList.URIItem
 
handleDelete() - Method in class org.protege.editor.owl.ui.framelist.OWLFrameList2
 
handleDelete() - Method in class org.protege.editor.owl.ui.list.OWLAxiomList
 
handleDelete() - Method in class org.protege.editor.owl.ui.OWLIndividualListComponent
 
handleDelete() - Method in class org.protege.editor.owl.ui.view.AbstractOWLPropertyHierarchyViewComponent
 
handleDelete() - Method in class org.protege.editor.owl.ui.view.AnonymousClassesView
 
handleDelete() - Method in interface org.protege.editor.owl.ui.view.Deleteable
 
handleDelete() - Method in class org.protege.editor.owl.ui.view.OWLIndividualListViewComponent
 
handleEdit() - Method in class org.coode.dlquery.DLQueryResultsSectionItem
 
handleEdit() - Method in class org.protege.editor.core.ui.list.MList
 
handleEdit() - Method in class org.protege.editor.core.ui.list.MList.TestItem
 
handleEdit() - Method in interface org.protege.editor.core.ui.list.MListItem
 
handleEdit() - Method in class org.protege.editor.core.ui.list.RemovableObjectList.RemovableObjectListItem
 
handleEdit() - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSectionRow
 
handleEdit() - Method in class org.protege.editor.owl.ui.frame.AnnotationURIList.URIItem
 
handleEdit() - Method in class org.protege.editor.owl.ui.framelist.OWLFrameList2
 
handleEditingFinished(Set<E>) - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSection
 
handleEditingFinished(Set<E>) - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSectionRow
 
handleEditingFinished(Set<O>) - Method in interface org.protege.editor.owl.ui.frame.OWLFrameSectionRowObjectEditorHandler
 
handleEditingFinished(Set<OWLImportsDeclaration>) - Method in class org.protege.editor.owl.ui.frame.OWLImportsDeclarationEditor
 
handleError(Thread, Throwable) - Method in class org.protege.editor.core.ui.error.ErrorLog
 
handleErrorLoadingOntology(URI, URI, T) - Method in interface org.protege.editor.owl.ui.error.OntologyLoadErrorHandler
 
handleErrorLoadingOntology(URI, URI, T) - Method in class org.protege.editor.owl.ui.error.OntologyLoadErrorHandlerUI
 
handleErrorSavingOntology(OWLOntology, URI, OWLOntologyStorageException) - Method in interface org.protege.editor.owl.model.SaveErrorHandler
 
handleEvent(ModelManagerEvent) - Method in interface org.protege.editor.core.ModelManagerListener
 
handleExplain(OWLAxiom) - Method in interface org.protege.editor.owl.ui.framelist.ExplanationHandler
 
handleExplain(OWLAxiom) - Method in class org.protege.editor.owl.ui.framelist.OWLFrameListExplanationHandler
 
handleKeyEvent(KeyEvent) - Method in class uk.ac.man.cs.mig.util.wizard.Wizard
Handles key events
handleLoadFrom(URI) - Method in interface org.protege.editor.core.editorkit.EditorKit
 
handleLoadFrom(URI) - Method in class org.protege.editor.owl.OWLEditorKit
 
handleLoadRecentRequest(EditorKitDescriptor) - Method in interface org.protege.editor.core.editorkit.EditorKit
 
handleLoadRecentRequest(EditorKitDescriptor) - Method in class org.protege.editor.owl.OWLEditorKit
 
handleLoadRequest() - Method in interface org.protege.editor.core.editorkit.EditorKit
 
handleLoadRequest() - Method in class org.protege.editor.owl.OWLEditorKit
 
handleModelChange() - Method in class org.protege.editor.core.ui.util.CheckList
 
handleMouseEvent(MouseEvent) - Method in class org.protege.editor.owl.ui.tree.OWLModelManagerTree
 
handleNewRequest() - Method in interface org.protege.editor.core.editorkit.EditorKit
Called by the system to initialise the editorkit to an "new" or "empty" state.
handleNewRequest() - Method in class org.protege.editor.owl.OWLEditorKit
 
handleOntologyChanges(List<? extends OWLOntologyChange>) - Method in interface org.protege.editor.owl.model.hierarchy.OWLOntologyObjectHierarchyProvider
 
handleOntologyChanges(List<OWLOntologyChange>) - Method in class org.protege.editor.owl.model.inference.NoOpReasoner
 
handleOptionApprove() - Method in class uk.ac.man.cs.mig.util.okcanceldialog.OKCancelDialog
 
handleOptionCancel() - Method in class uk.ac.man.cs.mig.util.okcanceldialog.OKCancelDialog
 
handlePaste(List<OWLObject>) - Method in class org.protege.editor.owl.ui.view.AbstractOWLViewComponent
 
handlePopupMenuInvoked(TreePath, Point) - Method in class org.protege.editor.owl.ui.tree.OWLModelManagerTree
 
handlePreferencesRequest() - Method in class org.protege.editor.core.platform.apple.AbstractAppleApplicationWrapper
 
handlePreferencesRequest() - Method in class org.protege.editor.core.platform.apple.ProtegeAppleApplication
 
handleQuit() - Static method in class org.protege.editor.core.ProtegeApplication
 
handleQuitRequest() - Method in class org.protege.editor.core.platform.apple.AbstractAppleApplicationWrapper
A quit notification has taken place.
handleQuitRequest() - Method in class org.protege.editor.core.platform.apple.ProtegeAppleApplication
 
handleRestart() - Static method in class org.protege.editor.core.ProtegeApplication
 
handleSave() - Method in interface org.protege.editor.core.editorkit.EditorKit
 
handleSave() - Method in class org.protege.editor.owl.OWLEditorKit
 
handleSaveAs() - Method in interface org.protege.editor.core.editorkit.EditorKit
 
handleSaveAs() - Method in class org.protege.editor.owl.OWLEditorKit
 
handleSelectAnnotation() - Method in class org.protege.editor.owl.ui.preferences.NewEntitiesPreferencesPanel
 
handleSelectionEvent(ListSelectionEvent) - Method in class org.protege.editor.owl.ui.framelist.OWLFrameList2
 
handleWindowActivated() - Method in class org.protege.editor.owl.ui.ontology.OntologySourcesChangedHandlerUI
 
HAS_NAME - Static variable in class uk.ac.man.cs.mig.coode.owlviz.ui.renderer.OWLClsNodeRenderer
 
hasDataPropertyRelationship(OWLIndividual, OWLDataPropertyExpression, OWLConstant) - Method in class org.protege.editor.owl.model.inference.NoOpReasoner
 
hasErrors() - Method in class org.protege.editor.owl.model.refactor.EntityFindAndReplaceURIRenamer
 
hashCode() - Method in class uk.ac.man.cs.mig.util.graph.graph.impl.DefaultEdge
 
hashCode() - Method in class uk.ac.man.cs.mig.util.graph.graph.impl.DefaultGraph.EdgeKey
 
hashCode() - Method in class uk.ac.man.cs.mig.util.graph.graph.impl.DefaultNode
Implementation of hashCode based on the object that the Node represents.
hasObjectPropertyRelationship(OWLIndividual, OWLObjectPropertyExpression, OWLIndividual) - Method in class org.protege.editor.owl.model.inference.NoOpReasoner
 
hasType(OWLIndividual, OWLDescription, boolean) - Method in class org.protege.editor.owl.model.inference.NoOpReasoner
 
HEADER_COLOR_PARAM - Static variable in class org.protege.editor.core.ui.view.ViewComponentPluginJPFImpl
 
HIDDEN - Static variable in interface org.protege.editor.core.ui.view.ViewComponentPlugin
 
HIDDEN_URIS_KEY - Static variable in class org.protege.editor.owl.ui.preferences.AnnotationPreferences
 
HIDE_ALL_CLASSES_ICON - Static variable in class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizIcons
 
HIDE_CLASS_ICON - Static variable in class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizIcons
 
HIDE_CLASSES_PAST_RADIUS_ICON - Static variable in class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizIcons
 
HIDE_SUBCLASSES_ICON - Static variable in class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizIcons
 
HIDE_SUPERCLASSES_ICON - Static variable in class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizIcons
 
hideAll() - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultVisualisedObjectManager
Hides all currently visible objects.
hideAll() - Method in interface uk.ac.man.cs.mig.util.graph.controller.VisualisedObjectManager
Hides all currently visible objects.
HideAllClassesCommand - Class in uk.ac.man.cs.mig.coode.owlviz.command
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Feb 11, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

HideAllClassesCommand(OWLVizViewI) - Constructor for class uk.ac.man.cs.mig.coode.owlviz.command.HideAllClassesCommand
 
hideChildren(Object) - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultVisualisedObjectManager
Hides the children of the specified object.
hideChildren(Object) - Method in interface uk.ac.man.cs.mig.util.graph.controller.VisualisedObjectManager
Hides the children of the specified object.
HideClassCommand - Class in uk.ac.man.cs.mig.coode.owlviz.command
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Feb 11, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

HideClassCommand(OWLVizViewI) - Constructor for class uk.ac.man.cs.mig.coode.owlviz.command.HideClassCommand
 
HideClassesPastRadiusCommand - Class in uk.ac.man.cs.mig.coode.owlviz.command
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Mar 5, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

HideClassesPastRadiusCommand(Controller, Controller) - Constructor for class uk.ac.man.cs.mig.coode.owlviz.command.HideClassesPastRadiusCommand
 
hideObject(Object) - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultVisualisedObjectManager
Makes the specified object hidden (if visible) is a visualisation of the graph model.
hideObject(Object) - Method in interface uk.ac.man.cs.mig.util.graph.controller.VisualisedObjectManager
Makes the specified object hidden (if visible) is a visualisation of the graph model.
hideObjects(Object, int, Class) - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultVisualisedObjectManager
Hides objects that are past the specified radius.
hideObjects(Object[]) - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultVisualisedObjectManager
Requests that the specified objects should be hidden/removed from the objects being visualised.
hideObjects(Object, int, Class) - Method in interface uk.ac.man.cs.mig.util.graph.controller.VisualisedObjectManager
Hides objects that are past the specified radius.
hideObjects(Object[]) - Method in interface uk.ac.man.cs.mig.util.graph.controller.VisualisedObjectManager
Requests that the specified objects should be hidden/removed from the objects being visualised.
hideParents(Object) - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultVisualisedObjectManager
Hides the parents of the speicfied object.
hideParents(Object) - Method in interface uk.ac.man.cs.mig.util.graph.controller.VisualisedObjectManager
Hides the parents of the speicfied object.
hidePopup() - Method in class uk.ac.man.cs.mig.util.popup.PopupComponent
Hides the popup
HideSubclassesCommand - Class in uk.ac.man.cs.mig.coode.owlviz.command
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Feb 11, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

HideSubclassesCommand(OWLVizViewI) - Constructor for class uk.ac.man.cs.mig.coode.owlviz.command.HideSubclassesCommand
 
hideViewBar() - Method in class org.protege.editor.core.ui.view.View
 
hierarchyChanged() - Method in interface org.protege.editor.owl.model.hierarchy.OWLObjectHierarchyProviderListener
Notifies the listener that the complete hierarchy has changed.
hierarchyCreationEnd() - Method in class org.protege.editor.owl.model.hierarchy.tabbed.AbstractOWLObjectHierarchyCreator
 
hierarchyCreationEnd() - Method in class org.protege.editor.owl.model.hierarchy.tabbed.OWLClassHierarchyCreator
Deprecated.  
hierarchyCreationStart() - Method in class org.protege.editor.owl.model.hierarchy.tabbed.AbstractOWLObjectHierarchyCreator
 
hierarchyCreationStart() - Method in class org.protege.editor.owl.model.hierarchy.tabbed.OWLClassHierarchyCreator
Deprecated.  
highlight(int, int) - Method in class org.protege.editor.owl.ui.error.SourcePanel
 
HIGHLIGHT_ACTIVE_ONTOLOGY_STATEMENTS - Static variable in class org.protege.editor.owl.ui.renderer.OWLRendererPreferences
 
HIGHLIGHT_CHANGED_ENTITIES - Static variable in class org.protege.editor.owl.ui.renderer.OWLRendererPreferences
 
HIGHLIGHT_KEY_WORDS - Static variable in class org.protege.editor.owl.ui.renderer.OWLRendererPreferences
 
HistoryManager - Interface in org.protege.editor.owl.model.history
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 19-May-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

HistoryManagerImpl - Class in org.protege.editor.owl.model.history
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 19-May-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

HistoryManagerImpl(OWLModelManager) - Constructor for class org.protege.editor.owl.model.history.HistoryManagerImpl
 

I

Icons - Class in org.protege.editor.core.ui.util
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Mar 23, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

Icons() - Constructor for class org.protege.editor.core.ui.util.Icons
 
ID - Static variable in class org.protege.editor.core.ProtegeApplication
 
ID - Static variable in class org.protege.editor.core.ui.preferences.PreferencesPanelPluginJPFImpl
 
ID - Static variable in class org.protege.editor.core.ui.view.ViewComponentPluginJPFImpl
 
ID - Static variable in class org.protege.editor.core.ui.workspace.WorkspaceTabPluginJPFImpl
The plugin extension point ID
ID - Static variable in class org.protege.editor.owl.model.description.anonymouscls.AnonymousDefinedClassManager
 
ID - Static variable in interface org.protege.editor.owl.model.hierarchy.OWLHierarchyManager
 
ID - Static variable in class org.protege.editor.owl.model.hierarchy.property.InferredObjectPropertyHierarchyProvider
 
ID - Static variable in interface org.protege.editor.owl.model.io.IOListenerPlugin
 
ID - Static variable in class org.protege.editor.owl.model.io.OntologySourcesManager
 
ID - Static variable in class org.protege.editor.owl.model.library.folder.FolderOntologyLibrary
 
ID - Static variable in interface org.protege.editor.owl.model.library.OntologyLibraryFactoryPlugin
 
ID - Static variable in class org.protege.editor.owl.OWLEditorKit
 
ID - Static variable in class org.protege.editor.owl.OWLEditorKitFactory
 
ID - Static variable in class org.protege.editor.owl.ProtegeOWL
 
ID - Static variable in class org.protege.editor.owl.ui.action.ExportInferredOntologyIncludeAssertedAxiomsPanel
 
ID - Static variable in class org.protege.editor.owl.ui.action.ExportInferredOntologyWizardSelectAxiomsPanel
 
ID - Static variable in interface org.protege.editor.owl.ui.editor.OWLDescriptionEditorPlugin
 
ID - Static variable in class org.protege.editor.owl.ui.hierarchy.creation.MakeSiblingClassesDisjointPanel
 
ID - Static variable in class org.protege.editor.owl.ui.hierarchy.creation.PickRootClassPanel
 
ID - Static variable in class org.protege.editor.owl.ui.hierarchy.creation.TabIndentedHierarchyPanel
 
ID - Static variable in class org.protege.editor.owl.ui.ontology.imports.missing.CopyOptionPanel
 
ID - Static variable in class org.protege.editor.owl.ui.ontology.imports.missing.ResolutionTypePanel
 
ID - Static variable in class org.protege.editor.owl.ui.ontology.imports.missing.SpecifyFilePathPanel
 
ID - Static variable in class org.protege.editor.owl.ui.ontology.imports.wizard.ImportConfirmationPage
 
ID - Static variable in class org.protege.editor.owl.ui.ontology.imports.wizard.ImportTypePage
 
ID - Static variable in class org.protege.editor.owl.ui.ontology.imports.wizard.ImportVerificationPage
 
ID - Static variable in class org.protege.editor.owl.ui.ontology.imports.wizard.LibraryPage
 
ID - Static variable in class org.protege.editor.owl.ui.ontology.imports.wizard.LoadedOntologyPage
 
ID - Static variable in class org.protege.editor.owl.ui.ontology.imports.wizard.LocalFilePage
 
ID - Static variable in class org.protege.editor.owl.ui.ontology.imports.wizard.URLPage
 
ID - Static variable in class org.protege.editor.owl.ui.ontology.migration.MigrationStartPanel
Deprecated.  
ID - Static variable in class org.protege.editor.owl.ui.ontology.wizard.create.OntologyURIPanel
 
ID - Static variable in class org.protege.editor.owl.ui.ontology.wizard.create.PhysicalLocationPanel
 
ID - Static variable in class org.protege.editor.owl.ui.ontology.wizard.merge.MergeTypePage
 
ID - Static variable in class org.protege.editor.owl.ui.ontology.wizard.merge.SelectOntologiesPage
 
ID - Static variable in class org.protege.editor.owl.ui.ontology.wizard.merge.SelectTargetOntologyPage
 
ID - Static variable in interface org.protege.editor.owl.ui.ontology.wizard.move.MoveAxiomsKitPlugin
 
ID - Static variable in class org.protege.editor.owl.ui.ontology.wizard.move.SelectActionPanel
 
ID - Static variable in class org.protege.editor.owl.ui.ontology.wizard.move.SelectKitPanel
 
ID - Static variable in class org.protege.editor.owl.ui.ontology.wizard.move.SelectSourceOntologiesPanel
 
ID - Static variable in class org.protege.editor.owl.ui.ontology.wizard.move.SelectTargetOntologyPanel
 
ID - Static variable in class org.protege.editor.owl.ui.ontology.wizard.move.SelectTargetOntologyTypePanel
 
ID - Static variable in interface org.protege.editor.owl.ui.renderer.OWLEntityColorProviderPlugin
 
ID - Static variable in class org.protege.editor.owl.ui.SpeciesValidationReportView
 
ID - Static variable in class org.protege.editor.owl.ui.view.SelectedEntityCardView
 
ID() - Method in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.DotParser
 
ID - Static variable in interface uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.DotParserConstants
 
ID_PROPERTY_NAME - Static variable in class org.protege.editor.core.update.PluginInfoDocument
 
ignoreImpendingButtonAction() - Method in class uk.ac.man.cs.mig.util.wizard.Wizard
Causes the next button action to be ignored.
ignoreUpdates(Set<OWLOntology>) - Method in class org.protege.editor.owl.model.io.OntologySourcesManager
 
image - Variable in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.Token
The string image of the token.
ImportConfirmationPage - Class in org.protege.editor.owl.ui.ontology.imports.wizard
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 13-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

ImportConfirmationPage(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.ontology.imports.wizard.ImportConfirmationPage
 
ImportParameters - Interface in org.protege.editor.owl.ui.ontology.imports.wizard
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 13-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

ImportsClosureClassCountMetric - Class in org.protege.editor.owl.ui.metrics
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 20-Feb-2007

ImportsClosureClassCountMetric() - Constructor for class org.protege.editor.owl.ui.metrics.ImportsClosureClassCountMetric
 
ImportsClosureDataPropertyCountMetric - Class in org.protege.editor.owl.ui.metrics
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 20-Feb-2007

ImportsClosureDataPropertyCountMetric() - Constructor for class org.protege.editor.owl.ui.metrics.ImportsClosureDataPropertyCountMetric
 
ImportsClosureIndividualCountMetric - Class in org.protege.editor.owl.ui.metrics
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 20-Feb-2007

ImportsClosureIndividualCountMetric() - Constructor for class org.protege.editor.owl.ui.metrics.ImportsClosureIndividualCountMetric
 
ImportsClosureObjectPropertyCountMetric - Class in org.protege.editor.owl.ui.metrics
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 20-Feb-2007

ImportsClosureObjectPropertyCountMetric() - Constructor for class org.protege.editor.owl.ui.metrics.ImportsClosureObjectPropertyCountMetric
 
ImportsClosureOntologySelectionStrategy - Class in org.protege.editor.owl.model.selection.ontologies
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Jun 6, 2008

ImportsClosureOntologySelectionStrategy(OWLModelManager) - Constructor for class org.protege.editor.owl.model.selection.ontologies.ImportsClosureOntologySelectionStrategy
 
ImportsClosureOntologyStrategyAction - Class in org.protege.editor.owl.ui.action
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Jun 6, 2008

ImportsClosureOntologyStrategyAction() - Constructor for class org.protege.editor.owl.ui.action.ImportsClosureOntologyStrategyAction
 
ImportTypePage - Class in org.protege.editor.owl.ui.ontology.imports.wizard
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 12-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

ImportTypePage(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.ontology.imports.wizard.ImportTypePage
 
ImportVerificationPage - Class in org.protege.editor.owl.ui.ontology.imports.wizard
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 12-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

ImportVerificationPage(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.ontology.imports.wizard.ImportVerificationPage
 
ImportVerifier - Interface in org.protege.editor.owl.ui.ontology.imports.wizard
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 13-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

inBuf - Variable in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.SimpleCharStream
 
INC_DAY_KEY - Static variable in class org.protege.editor.owl.ui.ontology.OntologyPreferences
 
INC_MONTH_KEY - Static variable in class org.protege.editor.owl.ui.ontology.OntologyPreferences
 
INC_YEAR_KEY - Static variable in class org.protege.editor.owl.ui.ontology.OntologyPreferences
 
includeImports(boolean) - Method in class org.protege.editor.owl.ui.metrics.MetricsTableModel
 
IncreaseFontSizeAction - Class in org.protege.editor.core.ui.action
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 21-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

IncreaseFontSizeAction() - Constructor for class org.protege.editor.core.ui.action.IncreaseFontSizeAction
 
increaseIndent(OWLAxiom) - Method in class org.protege.editor.owl.ui.frame.ExplanationFrameSection
 
increaseSelectedRowIndent() - Method in class org.protege.editor.owl.ui.framelist.ExplanationFrameList
 
INDIVIDUAL_COLOR_KEY - Static variable in class org.protege.editor.core.ProtegeProperties
 
INDIVIDUAL_VIEW_CATEGORY - Static variable in class org.protege.editor.core.ProtegeProperties
 
IndividualCountMetric - Class in org.protege.editor.owl.ui.metrics
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 20-Feb-2007

IndividualCountMetric() - Constructor for class org.protege.editor.owl.ui.metrics.IndividualCountMetric
 
IndividualReferencingAxiomStrategy - Class in org.protege.editor.owl.model.selection.axioms
User: nickdrummond Date: May 22, 2008
IndividualReferencingAxiomStrategy() - Constructor for class org.protege.editor.owl.model.selection.axioms.IndividualReferencingAxiomStrategy
 
IndividualsByInferredTypeHierarchyProvider - Class in org.protege.editor.owl.model.hierarchy
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 24-May-2007

IndividualsByInferredTypeHierarchyProvider(OWLOntologyManager) - Constructor for class org.protege.editor.owl.model.hierarchy.IndividualsByInferredTypeHierarchyProvider
 
IndividualsByTypeHierarchyProvider - Class in org.protege.editor.owl.model.hierarchy
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 24-May-2007

IndividualsByTypeHierarchyProvider(OWLOntologyManager) - Constructor for class org.protege.editor.owl.model.hierarchy.IndividualsByTypeHierarchyProvider
 
individualsInList - Variable in class org.protege.editor.owl.ui.view.OWLIndividualListViewComponent
 
INFERRED_HIERARCHY - Static variable in class uk.ac.man.cs.mig.coode.owlviz.ui.exportwizard.SpecifyHierarchyPage
 
InferredAxiomsFrame - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 14-Oct-2007

InferredAxiomsFrame(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.frame.InferredAxiomsFrame
 
InferredAxiomsFrameSection - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 14-Oct-2007

InferredAxiomsFrameSection(OWLEditorKit, OWLFrame<? extends OWLOntology>) - Constructor for class org.protege.editor.owl.ui.frame.InferredAxiomsFrameSection
 
InferredAxiomsFrameSectionRow - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 14-Oct-2007

InferredAxiomsFrameSectionRow(OWLEditorKit, OWLFrameSection, OWLOntology, OWLOntology, OWLAxiom) - Constructor for class org.protege.editor.owl.ui.frame.InferredAxiomsFrameSectionRow
 
InferredAxiomsViewComponent - Class in org.protege.editor.owl.ui.view
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 14-Oct-2007

InferredAxiomsViewComponent() - Constructor for class org.protege.editor.owl.ui.view.InferredAxiomsViewComponent
 
InferredObjectPropertyHierarchyProvider - Class in org.protege.editor.owl.model.hierarchy.property
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Oct 15, 2008

InferredObjectPropertyHierarchyProvider(OWLModelManager) - Constructor for class org.protege.editor.owl.model.hierarchy.property.InferredObjectPropertyHierarchyProvider
 
InferredObjectPropertyHierarchyViewComponent - Class in org.protege.editor.owl.ui.view
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Oct 16, 2008

InferredObjectPropertyHierarchyViewComponent() - Constructor for class org.protege.editor.owl.ui.view.InferredObjectPropertyHierarchyViewComponent
 
InferredOWLClassHierarchyProvider - Class in org.protege.editor.owl.model.hierarchy.cls
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 06-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

InferredOWLClassHierarchyProvider(OWLModelManager, OWLOntologyManager) - Constructor for class org.protege.editor.owl.model.hierarchy.cls.InferredOWLClassHierarchyProvider
 
InferredOWLClassHierarchyViewComponent - Class in org.protege.editor.owl.ui.clshierarchy
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 06-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

InferredOWLClassHierarchyViewComponent() - Constructor for class org.protege.editor.owl.ui.clshierarchy.InferredOWLClassHierarchyViewComponent
 
InferredSuperClassHierarchyProvider - Class in org.protege.editor.owl.model.hierarchy.cls
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 14-Sep-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

InferredSuperClassHierarchyProvider(OWLModelManager) - Constructor for class org.protege.editor.owl.model.hierarchy.cls.InferredSuperClassHierarchyProvider
 
InferredSuperClassHierarchyViewComponent - Class in org.protege.editor.owl.ui.clshierarchy
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 14-Sep-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

InferredSuperClassHierarchyViewComponent() - Constructor for class org.protege.editor.owl.ui.clshierarchy.InferredSuperClassHierarchyViewComponent
 
InheritedAnonymousClassesFrameSection - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 23-Feb-2007

InheritedAnonymousClassesFrameSection(OWLEditorKit, OWLFrame<? extends OWLClass>) - Constructor for class org.protege.editor.owl.ui.frame.InheritedAnonymousClassesFrameSection
 
InheritedAnonymousClassesFrameSectionRow - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 23-Feb-2007

InheritedAnonymousClassesFrameSectionRow(OWLEditorKit, OWLFrameSection, OWLOntology, OWLClass, OWLClassAxiom) - Constructor for class org.protege.editor.owl.ui.frame.InheritedAnonymousClassesFrameSectionRow
 
initApplication() - Method in class org.protege.editor.core.ProtegeApplication
 
initialise() - Method in class org.protege.editor.core.editorkit.AbstractEditorKit
 
initialise(ProtegeApplication, BundleContext) - Method in class org.protege.editor.core.plugin.PluginUtilities
This method is called by the system to initialise the plugin utilities.
initialise() - Method in interface org.protege.editor.core.plugin.ProtegePluginInstance
The initialise method is called at the start of a plugin instance life cycle.
initialise(ProtegeApplication) - Method in class org.protege.editor.core.ProtegeManager
 
initialise() - Method in class org.protege.editor.core.ui.action.AbstractFontSizeAction
 
initialise() - Method in class org.protege.editor.core.ui.action.CheckPluginsAction
 
initialise() - Method in class org.protege.editor.core.ui.action.CloseAction
 
initialise() - Method in class org.protege.editor.core.ui.action.NewAction
 
initialise() - Method in class org.protege.editor.core.ui.action.OpenAction
 
initialise() - Method in class org.protege.editor.core.ui.action.OpenRecentAction
 
initialise() - Method in class org.protege.editor.core.ui.action.SaveAction
 
initialise() - Method in class org.protege.editor.core.ui.action.SaveAsAction
 
initialise() - Method in class org.protege.editor.core.ui.action.TimestampOutputAction
 
initialise() - Method in class org.protege.editor.core.ui.menu.NullMenuAction
The initialise method is called at the start of a plugin instance life cycle.
initialise() - Method in class org.protege.editor.core.ui.menu.OpenURLMenuAction
 
initialise() - Method in class org.protege.editor.core.ui.preferences.ShowPreferencesAction
 
initialise() - Method in class org.protege.editor.core.ui.view.ViewActionAdapter
The initialise method is called at the start of a plugin instance life cycle.
initialise() - Method in class org.protege.editor.core.ui.wizard.WizardPanel
 
initialise() - Method in class org.protege.editor.core.ui.workspace.TabbedWorkspace
Override of the Workspace initialise method.
initialise() - Method in class org.protege.editor.core.ui.workspace.WorkspaceViewsTab
 
initialise() - Method in class org.protege.editor.core.update.PluginPreferencesPanel
 
initialise() - Method in class org.protege.editor.owl.model.inference.NoOpReasonerFactory
 
initialise() - Method in class org.protege.editor.owl.model.inference.ToldReasonerFactory
 
initialise() - Method in class org.protege.editor.owl.model.library.folder.FolderOntologyLibraryFactory
 
initialise() - Method in class org.protege.editor.owl.model.OWLWorkspace
 
initialise() - Method in class org.protege.editor.owl.model.repository.ManchesterRepository
 
initialise() - Method in class org.protege.editor.owl.model.repository.TONESRepositoryFactory
 
initialise() - Method in class org.protege.editor.owl.OWLEditorKit
 
initialise() - Method in class org.protege.editor.owl.ui.action.AbstractOntologySelectionStrategyAction
 
initialise() - Method in class org.protege.editor.owl.ui.action.AmalgamateDisjointClassesAction
 
initialise() - Method in class org.protege.editor.owl.ui.action.AmalgamateSuperClassesAction
 
initialise() - Method in class org.protege.editor.owl.ui.action.ChangeOntologyURI
 
initialise() - Method in class org.protege.editor.owl.ui.action.CloseOntologiesAction
 
initialise() - Method in class org.protege.editor.owl.ui.action.CoerceDataPropertyValuesIntoPropertyRangeAction
 
initialise() - Method in class org.protege.editor.owl.ui.action.ConvertAssertionsOnPunsToAnnotations
 
initialise() - Method in class org.protege.editor.owl.ui.action.ConvertEntityURIsToLabels
 
initialise() - Method in class org.protege.editor.owl.ui.action.ConvertMinOneToSomeValuesFromAction
 
initialise() - Method in class org.protege.editor.owl.ui.action.CreateClassHierarchyAction
 
initialise() - Method in class org.protege.editor.owl.ui.action.CreateDataPropertyAction
The initialise method is called at the start of a plugin instance life cycle.
initialise() - Method in class org.protege.editor.owl.ui.action.CreateEmptyOntologyAction
 
initialise() - Method in class org.protege.editor.owl.ui.action.CreateInstanceOfThingAction
The initialise method is called at the start of a plugin instance life cycle.
initialise() - Method in class org.protege.editor.owl.ui.action.ExportInferredOntologyAction
 
initialise() - Method in class org.protege.editor.owl.ui.action.FindAction
 
initialise() - Method in class org.protege.editor.owl.ui.action.FocusedComponentAction
 
initialise() - Method in class org.protege.editor.owl.ui.action.GatherOntologiesAction
 
initialise() - Method in class org.protege.editor.owl.ui.action.LoadIntoCurrentModelAction
 
initialise() - Method in class org.protege.editor.owl.ui.action.MakeAllIndividualsDifferent
 
initialise() - Method in class org.protege.editor.owl.ui.action.MergeOntologiesAction
 
initialise() - Method in class org.protege.editor.owl.ui.action.MoveAxiomsToOntologyAction
 
initialise() - Method in class org.protege.editor.owl.ui.action.OpenFromURIAction
 
initialise() - Method in class org.protege.editor.owl.ui.action.RedoAction
The initialise method is called at the start of a plugin instance life cycle.
initialise() - Method in class org.protege.editor.owl.ui.action.RemoveAllDisjointAxiomsAction
 
initialise() - Method in class org.protege.editor.owl.ui.action.RemoveRedundantImportsAction
 
initialise() - Method in class org.protege.editor.owl.ui.action.RenameEntitiesBySearchAndReplaceAction
 
initialise() - Method in class org.protege.editor.owl.ui.action.SelectedOWLClassAction
The initialise method is called at the start of a plugin instance life cycle.
initialise() - Method in class org.protege.editor.owl.ui.action.SelectedOWLDataPropertyAction
The initialise method is called at the start of a plugin instance life cycle.
initialise() - Method in class org.protege.editor.owl.ui.action.SelectedOWLEntityAction
 
initialise() - Method in class org.protege.editor.owl.ui.action.SelectedOWLObjectPropertyAction
The initialise method is called at the start of a plugin instance life cycle.
initialise() - Method in class org.protege.editor.owl.ui.action.SplitDisjointClassesAction
 
initialise() - Method in class org.protege.editor.owl.ui.action.SplitSubClassAxiomsAction
 
initialise() - Method in class org.protege.editor.owl.ui.action.UndoAction
The initialise method is called at the start of a plugin instance life cycle.
initialise() - Method in class org.protege.editor.owl.ui.clshierarchy.AbstractOWLClassTreeAction
The initialise method is called at the start of a plugin instance life cycle.
initialise() - Method in class org.protege.editor.owl.ui.editor.AbstractRestrictionCreatorPanel
 
initialise() - Method in class org.protege.editor.owl.ui.editor.OWLClassSelectorWrapper
 
initialise() - Method in class org.protege.editor.owl.ui.editor.OWLDescriptionExpressionEditor
 
initialise() - Method in class org.protege.editor.owl.ui.framelist.CreateClosureAxiomAction
 
initialise() - Method in class org.protege.editor.owl.ui.framelist.CreateNewEquivalentClassAction
 
initialise() - Method in class org.protege.editor.owl.ui.framelist.MoveAxiomsToOntologyAction
 
initialise() - Method in class org.protege.editor.owl.ui.framelist.OWLFrameListPopupMenuAction
 
initialise() - Method in class org.protege.editor.owl.ui.framelist.PullIntoActiveOntologyAction
 
initialise() - Method in class org.protege.editor.owl.ui.framelist.SwitchToDefiningOntologyAction
 
initialise() - Method in class org.protege.editor.owl.ui.inference.ClassifyAction
The initialise method is called at the start of a plugin instance life cycle.
initialise() - Method in class org.protege.editor.owl.ui.inference.DIGReasonerPreferencesPanel
 
initialise() - Method in class org.protege.editor.owl.ui.inference.SelectedReasonerAction
The initialise method is called at the start of a plugin instance life cycle.
initialise() - Method in class org.protege.editor.owl.ui.library.ShowOntologyLibrariesAction
 
initialise() - Method in class org.protege.editor.owl.ui.ontology.location.ShowOntologyLocationsAction
 
initialise() - Method in class org.protege.editor.owl.ui.ontology.OntologyPreferencesPanel
 
initialise() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.byannotation.AnnotationSelectorPanel
 
initialise() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.byannotation.MoveAnnotationAxiomsByURIKit
 
initialise() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.byprofile.MoveAxiomsByProfileKit
 
initialise() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.byprofile.ProfileSelectorPanel
 
initialise() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.byreference.MoveAxiomsByReferenceKit
 
initialise() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.byreference.SelectSignaturePanel
 
initialise() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.bytype.AxiomTypeSelectorPanel
 
initialise() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.bytype.MoveAxiomsByTypeKit
 
initialise() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.common.SignatureDependentSelectionPreviewPanel
 
initialise() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.MoveAxiomsKitConfigurationPanel
 
initialise() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.SelectAxiomsPanel
 
initialise() - Method in class org.protege.editor.owl.ui.OWLWorkspaceViewsTab
 
initialise() - Method in class org.protege.editor.owl.ui.preferences.AnnotationPreferencesPanel
 
initialise() - Method in class org.protege.editor.owl.ui.preferences.GeneralPreferencesPanel
 
initialise() - Method in class org.protege.editor.owl.ui.preferences.NewEntitiesPreferencesPanel
 
initialise() - Method in class org.protege.editor.owl.ui.preferences.SavePreferencesPanel
 
initialise() - Method in class org.protege.editor.owl.ui.prefix.ShowPrefixMappingsAction
 
initialise() - Method in class org.protege.editor.owl.ui.renderer.OWLEntityAnnotationValueRenderer
 
initialise() - Method in class org.protege.editor.owl.ui.renderer.OWLEntityQNameRenderer
 
initialise() - Method in class org.protege.editor.owl.ui.renderer.OWLEntityRendererImpl
 
initialise() - Method in interface org.protege.editor.owl.ui.renderer.OWLModelManagerEntityRenderer
 
initialise() - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererDLSyntax
 
initialise() - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
initialise() - Method in class org.protege.editor.owl.ui.renderer.PrefixedOWLEntityAnnotationValueRenderer
 
initialise() - Method in class org.protege.editor.owl.ui.renderer.RendererPreferencesPanel
 
initialise() - Method in class org.protege.editor.owl.ui.tree.OWLTreePreferencesPanel
 
initialise() - Method in class org.protege.editor.owl.ui.view.AbstractOWLViewComponent
 
initialise() - Method in class uk.ac.man.cs.mig.coode.owlviz.command.SetOptionsCommand
 
initialise() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.options.OWLVizPreferencesPane
 
initialise() - Method in class uk.ac.manchester.cs.factplusplus.protege.FaCTPlusPlusReasonerFactory
 
initialiseAction() - Method in class org.protege.editor.owl.ui.action.AddCoveringAxiomAction
 
initialiseAction() - Method in class org.protege.editor.owl.ui.action.ConvertToDefinedClassAction
 
initialiseAction() - Method in class org.protege.editor.owl.ui.action.ConvertToPrimitiveClassAction
 
initialiseAction() - Method in class org.protege.editor.owl.ui.action.CopyAction
 
initialiseAction() - Method in class org.protege.editor.owl.ui.action.CreateInstanceOfSelectedClassAction
 
initialiseAction() - Method in class org.protege.editor.owl.ui.action.CreateNewChildAction
 
initialiseAction() - Method in class org.protege.editor.owl.ui.action.CreateNewObjectAction
 
initialiseAction() - Method in class org.protege.editor.owl.ui.action.CreateNewSiblingAction
 
initialiseAction() - Method in class org.protege.editor.owl.ui.action.CreateObjectPropertyAction
Deprecated.  
initialiseAction() - Method in class org.protege.editor.owl.ui.action.CreateSubClassAction
Deprecated. The initialise method is called at the start of a plugin instance life cycle.
initialiseAction() - Method in class org.protege.editor.owl.ui.action.CreateSubObjectPropertyAction
Deprecated.  
initialiseAction() - Method in class org.protege.editor.owl.ui.action.CutAction
 
initialiseAction() - Method in class org.protege.editor.owl.ui.action.DeleteAction
 
initialiseAction() - Method in class org.protege.editor.owl.ui.action.DuplicateSelectedClassAction
 
initialiseAction() - Method in class org.protege.editor.owl.ui.action.FocusedComponentAction
 
initialiseAction() - Method in class org.protege.editor.owl.ui.action.MakePrimitiveSiblingsDisjoint
 
initialiseAction() - Method in class org.protege.editor.owl.ui.action.PasteAction
 
initialiseAction() - Method in class org.protege.editor.owl.ui.action.RemoveLocalDisjointAxiomsAction
 
initialiseAction() - Method in class org.protege.editor.owl.ui.action.SelectedOWLClassAction
 
initialiseAction() - Method in class org.protege.editor.owl.ui.action.SelectedOWLObjectPropertyAction
 
initialiseClassView() - Method in class org.protege.editor.owl.ui.clshierarchy.AbstractOWLClassHierarchyViewComponent
 
initialiseClassView() - Method in class org.protege.editor.owl.ui.view.AbstractOWLClassViewComponent
 
initialiseClassView() - Method in class org.protege.editor.owl.ui.view.OWLClassAnnotationsViewComponent
 
initialiseClassView() - Method in class org.protege.editor.owl.ui.view.OWLClassDescriptionViewComponent
 
initialiseClassView() - Method in class org.protege.editor.owl.ui.view.OWLClassUsageViewComponent
 
initialiseClassView() - Method in class org.protege.editor.owl.ui.view.OWLDisjointClassesViewComponent
 
initialiseClassView() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizAxiomView
 
initialiseClassView() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizView
 
initialiseCompleted() - Method in class org.protege.editor.core.editorkit.AbstractEditorKit
 
initialiseCompleted() - Method in class org.protege.editor.owl.OWLEditorKit
 
initialiseExtraMenuItems(JMenuBar) - Method in class org.protege.editor.core.ui.workspace.TabbedWorkspace
 
initialiseExtraMenuItems(JMenuBar) - Method in class org.protege.editor.core.ui.workspace.Workspace
 
initialiseExtraMenuItems(JMenuBar) - Method in class org.protege.editor.owl.model.OWLWorkspace
 
initialiseIndividualsView() - Method in class org.protege.editor.owl.ui.OWLIndividualListComponent
 
initialiseIndividualsView() - Method in class org.protege.editor.owl.ui.view.AbstractOWLIndividualViewComponent
 
initialiseIndividualsView() - Method in class org.protege.editor.owl.ui.view.OWLIndividualAnnotationsViewComponent
 
initialiseIndividualsView() - Method in class org.protege.editor.owl.ui.view.OWLIndividualDescriptionViewComponent
 
initialiseIndividualsView() - Method in class org.protege.editor.owl.ui.view.OWLIndividualListViewComponent
 
initialiseIndividualsView() - Method in class org.protege.editor.owl.ui.view.OWLIndividualPropertyAssertionsViewComponent
 
initialiseIndividualsView() - Method in class org.protege.editor.owl.ui.view.OWLIndividualsByClassViewComponent
 
initialiseIndividualsView() - Method in class org.protege.editor.owl.ui.view.OWLIndividualsByInferredTypeViewComponent
 
initialiseIndividualsView() - Method in class org.protege.editor.owl.ui.view.OWLIndividualUsageViewComponent
 
initialiseIndividualsView() - Method in class org.protege.editor.owl.ui.view.OWLMembersListViewComponent
 
initialiseOntologyView() - Method in class org.protege.editor.owl.ui.metrics.AxiomMetricsViewComponent
 
initialiseOntologyView() - Method in class org.protege.editor.owl.ui.view.AbstractActiveOntologyViewComponent
 
initialiseOntologyView() - Method in class org.protege.editor.owl.ui.view.AbstractOntologyRenderingViewComponent
 
initialiseOntologyView() - Method in class org.protege.editor.owl.ui.view.AnonymousClassesView
 
initialiseOntologyView() - Method in class org.protege.editor.owl.ui.view.InferredAxiomsViewComponent
 
initialiseOntologyView() - Method in class org.protege.editor.owl.ui.view.OWLGeneralAxiomsViewComponent
 
initialiseOntologyView() - Method in class org.protege.editor.owl.ui.view.SWRLRulesViewComponent
 
initialiseOWLView() - Method in class org.coode.dlquery.OWLDescriptionEditorViewComponent
 
initialiseOWLView() - Method in class org.protege.editor.owl.ui.find.OWLEntityFinderViewComponent
 
initialiseOWLView() - Method in class org.protege.editor.owl.ui.metrics.DLMetricsViewComponent
 
initialiseOWLView() - Method in class org.protege.editor.owl.ui.metrics.MetricsPanel
 
initialiseOWLView() - Method in class org.protege.editor.owl.ui.ontology.ActiveOntologyView
 
initialiseOWLView() - Method in class org.protege.editor.owl.ui.SpeciesValidationReportView
The initialise method is called at the start of a plugin instance life cycle.
initialiseOWLView() - Method in class org.protege.editor.owl.ui.view.AbstractActiveOntologyViewComponent
 
initialiseOWLView() - Method in class org.protege.editor.owl.ui.view.AbstractOWLSelectionViewComponent
The initialise method is called at the start of a plugin instance life cycle.
initialiseOWLView() - Method in class org.protege.editor.owl.ui.view.AbstractOWLViewComponent
 
initialiseOWLView() - Method in class org.protege.editor.owl.ui.view.ExplanationResultsViewComponent
 
initialiseOWLView() - Method in class org.protege.editor.owl.ui.view.ObjectSelectorViewComponent
 
initialiseOWLView() - Method in class org.protege.editor.owl.ui.view.OWLAxiomAnnotationsView
 
initialiseOWLView() - Method in class org.protege.editor.owl.ui.view.OWLEntityViewComponent
 
initialiseOWLView() - Method in class org.protege.editor.owl.ui.view.OWLImportsDeclarationsViewComponent
 
initialiseOWLView() - Method in class org.protege.editor.owl.ui.view.OWLOntologyAnnotationViewComponent
 
initialiseOWLView() - Method in class org.protege.editor.owl.ui.view.SelectedEntityCardView
 
initialiseOWLView() - Method in class org.protege.editor.owl.ui.view.SelectedObjectViewComponent
 
initialiseOWLView() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizImportsViewComponent
 
initialiseView() - Method in class org.protege.editor.owl.ui.view.AbstractOWLClassViewComponent
 
initialiseView() - Method in class org.protege.editor.owl.ui.view.AbstractOWLIndividualViewComponent
 
initialiseView() - Method in class org.protege.editor.owl.ui.view.AbstractOWLPropertyHierarchyViewComponent
 
initialiseView() - Method in class org.protege.editor.owl.ui.view.AbstractOWLSelectionViewComponent
 
initialiseView() - Method in class org.protege.editor.owl.ui.view.ManchesterSyntaxFrameView
 
initialiseView() - Method in class org.protege.editor.owl.ui.view.OWLDataPropertyAnnotationsViewComponent
 
initialiseView() - Method in class org.protege.editor.owl.ui.view.OWLDataPropertyCharacteristicsViewComponent
 
initialiseView() - Method in class org.protege.editor.owl.ui.view.OWLDataPropertyDescriptionViewComponent
 
initialiseView() - Method in class org.protege.editor.owl.ui.view.OWLDataPropertyDomainsAndRangesViewComponent
 
initialiseView() - Method in class org.protege.editor.owl.ui.view.OWLDataPropertyUsageViewComponent
 
initialiseView() - Method in class org.protege.editor.owl.ui.view.OWLEntityUsageViewComponent
 
initialiseView() - Method in class org.protege.editor.owl.ui.view.OWLObjectPropertyAnnotationsViewComponent
 
initialiseView() - Method in class org.protege.editor.owl.ui.view.OWLObjectPropertyCharacteristicsViewComponent
 
initialiseView() - Method in class org.protege.editor.owl.ui.view.OWLObjectPropertyDescriptionViewComponent
 
initialiseView() - Method in class org.protege.editor.owl.ui.view.OWLObjectPropertyDomainsAndRangesViewComponent
 
initialiseView() - Method in class org.protege.editor.owl.ui.view.OWLObjectPropertyUsageViewComponent
 
input_stream - Variable in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.DotParserTokenManager
 
inputStream - Variable in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.SimpleCharStream
 
InputVerificationStatusChangedListener - Interface in org.protege.editor.core.ui.util
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Mar 14, 2008

insertIndent(int) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererDLSyntax
 
insertIndent(int) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
installDefaults() - Method in class org.protege.editor.core.ui.tabbedpane.ViewTabbedPaneUI
 
instance - Static variable in class uk.ac.man.cs.mig.util.graph.export.ExportFormatManager
 
instantiate() - Method in class org.protege.editor.core.plugin.ExtensionInstantiator
Creates an instance of the plugin
INTERSECTION_NAME - Static variable in class uk.ac.man.cs.mig.coode.owlviz.ui.renderer.OWLClsNodeRenderer
 
invalidateGraph() - Method in interface uk.ac.man.cs.mig.util.graph.controller.GraphGenerator
Causes the Graph to be rebuilt.
invalidateGraph() - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultGraphGenerator
Causes the graph to be invalidated, which causes the graph to be rebuilt when asked for.
invalidateLayout(Container) - Method in class org.protege.editor.core.ui.preferences.PreferencesPanelLayoutManager
 
IOListener - Class in org.protege.editor.owl.model.io
Author: Matthew Horridge
The University Of Manchester
Information Management Group
Date: 16-Sep-2008

A listener that is informed of load and save events on an OWLModel.
IOListener() - Constructor for class org.protege.editor.owl.model.io.IOListener
 
IOListenerEvent - Class in org.protege.editor.owl.model.io
Author: Matthew Horridge
The University Of Manchester
Information Management Group
Date: 16-Sep-2008

IOListenerEvent(URI, URI) - Constructor for class org.protege.editor.owl.model.io.IOListenerEvent
 
IOListenerPlugin - Interface in org.protege.editor.owl.model.io
Author: Matthew Horridge
The University Of Manchester
Information Management Group
Date: 16-Sep-2008

IOListenerPluginImpl - Class in org.protege.editor.owl.model.io
Author: Matthew Horridge
The University Of Manchester
Information Management Group
Date: 16-Sep-2008

IOListenerPluginImpl(IExtension, OWLEditorKit) - Constructor for class org.protege.editor.owl.model.io.IOListenerPluginImpl
 
IOListenerPluginInstance - Class in org.protege.editor.owl.model.io
Author: Matthew Horridge
The University Of Manchester
Information Management Group
Date: 16-Sep-2008

IOListenerPluginInstance() - Constructor for class org.protege.editor.owl.model.io.IOListenerPluginInstance
 
IOListenerPluginLoader - Class in org.protege.editor.owl.model.io
Author: Matthew Horridge
The University Of Manchester
Information Management Group
Date: 16-Sep-2008

IOListenerPluginLoader(OWLEditorKit) - Constructor for class org.protege.editor.owl.model.io.IOListenerPluginLoader
 
isAcceptableTransferable(Transferable) - Method in class org.protege.editor.owl.ui.table.OWLObjectDropTargetListener
 
isActiveOntologyMutable() - Method in interface org.protege.editor.owl.model.OWLModelManager
A convenience method that determines if the active ontology is mutable.
isActiveOntologyMutable() - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
 
isAllChildrenVisible() - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.VisualisedObjectWrapper
 
isAllParentsVisible() - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.VisualisedObjectWrapper
 
isAnonymous(OWLClass) - Method in class org.protege.editor.owl.model.description.anonymouscls.AnonymousDefinedClassManager
 
isAntiSymmetric(OWLObjectProperty) - Method in class org.protege.editor.owl.model.inference.NoOpReasoner
 
isAutoExpandEnabled() - Method in class org.protege.editor.owl.ui.tree.OWLTreePreferences
 
isAutoRenamePuns() - Static method in class org.protege.editor.owl.ui.rename.RenameEntityPanel
 
isAutoUpdateEnabled() - Method in class org.protege.editor.core.update.PluginManager
 
isAxiomSelectionSyncronized() - Method in class org.protege.editor.owl.ui.framelist.OWLFrameList2
 
isBorderOpaque() - Method in class org.protege.editor.owl.ui.framelist.OWLFrameListInferredSectionRowBorder
Returns whether or not the border is opaque.
isBoxedName(String) - Method in class org.protege.editor.owl.ui.renderer.OWLCellRenderer
 
isBusy() - Method in class org.protege.editor.core.ui.progress.BackgroundTaskManager
 
isCancelled() - Method in class org.protege.editor.owl.ui.inference.ReasonerProgressUI
 
isCellEditable(int, int) - Method in class org.protege.editor.core.ui.util.CheckTableModel
 
isCellEditable(int, int) - Method in class org.protege.editor.owl.ui.prefix.PrefixMapperTableModel
 
isCellEditable(EventObject) - Method in class org.protege.editor.owl.ui.prefix.PrefixTableCellEditor
 
isChanged(N) - Method in class org.protege.editor.owl.model.hierarchy.OWLObjectHierarchyDiffTool
 
isChangedEntity(OWLEntity) - Method in interface org.protege.editor.owl.model.OWLModelManager
 
isChangedEntity(OWLEntity) - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
 
isClassified() - Method in class org.protege.editor.owl.model.inference.NoOpReasoner
 
isClosable() - Method in class org.protege.editor.core.ui.view.View
 
isConsistent(OWLOntology) - Method in class org.protege.editor.owl.model.inference.NoOpReasoner
 
isCustomTab(String) - Method in class org.protege.editor.core.ui.workspace.CustomWorkspaceTabsManager
Determines if the specified name/id corresponds to the name/id of a custom tab.
isDataFlavorSupported(DataFlavor) - Method in class org.protege.editor.owl.ui.transfer.TransferableOWLObject
 
isDataTypeExpected() - Method in exception org.protege.editor.owl.model.description.OWLExpressionParserException
 
isDefined(OWLClass) - Method in class org.protege.editor.owl.model.inference.NoOpReasoner
 
isDefined(OWLObjectProperty) - Method in class org.protege.editor.owl.model.inference.NoOpReasoner
 
isDefined(OWLDataProperty) - Method in class org.protege.editor.owl.model.inference.NoOpReasoner
 
isDefined(OWLIndividual) - Method in class org.protege.editor.owl.model.inference.NoOpReasoner
 
isDeletable() - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSectionRow
Deprecated. use isDeleateable instead
isDeletable() - Method in interface org.protege.editor.owl.ui.frame.OWLFrameSectionRow
Deprecated. Use isDeleateable instead
isDeleteable() - Method in class org.coode.dlquery.DLQueryResultsSectionItem
 
isDeleteable() - Method in class org.protege.editor.core.ui.list.MList.TestItem
 
isDeleteable() - Method in interface org.protege.editor.core.ui.list.MListItem
 
isDeleteable() - Method in class org.protege.editor.core.ui.list.RemovableObjectList.RemovableObjectListItem
 
isDeleteable() - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSectionRow
 
isDeleteable() - Method in class org.protege.editor.owl.ui.frame.AnnotationURIList.URIItem
 
isDeleteable() - Method in class org.protege.editor.owl.ui.frame.AxiomListFrameSectionRow
 
isDeleteable() - Method in class org.protege.editor.owl.ui.frame.ExplanationFrameSectionRow
 
isDeleteable() - Method in class org.protege.editor.owl.ui.frame.OWLImportsDeclarationAxiomFrameSectionRow
 
isDeleteable() - Method in class org.protege.editor.owl.ui.frame.SWRLRuleFrameSectionRow
 
isDirty() - Method in interface org.protege.editor.core.ModelManager
 
isDirty() - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
 
isDirty() - Method in class org.protege.editor.owl.ui.renderer.RendererPreferencesPanel
 
isDisplayAnonymousClasses() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.options.OWLVizViewOptions
 
isDisplayDisjointClassIndicator() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.options.OWLVizViewOptions
 
isDisplayIndividuals() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.options.OWLVizViewOptions
 
isDisplayIsALabels() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.options.OWLVizViewOptions
 
isDragAcceptable(DropTargetDragEvent) - Method in class org.protege.editor.owl.ui.table.OWLObjectDropTargetListener
 
isDragAcceptable(DropTargetDragEvent) - Method in class org.protege.editor.owl.ui.transfer.OWLObjectTreeDropTargetListener
 
isDropAcceptable(DropTargetDropEvent) - Method in class org.protege.editor.owl.ui.table.OWLObjectDropTargetListener
 
isDropAcceptable(DropTargetDropEvent) - Method in class org.protege.editor.owl.ui.transfer.OWLObjectTreeDropTargetListener
 
isDynamic() - Method in interface org.protege.editor.core.ui.menu.MenuActionPlugin
Determines if the menu is dynamically constructed after the plugin has been loaded.
isDynamic() - Method in class org.protege.editor.core.ui.menu.MenuActionPluginJPFImpl
Determines if the menu is dynamically constructed after the plugin has been loaded.
isEditable() - Method in class org.coode.dlquery.DLQueryResultsSectionItem
 
isEditable() - Method in class org.protege.editor.core.ui.list.MList.TestItem
 
isEditable() - Method in interface org.protege.editor.core.ui.list.MListItem
 
isEditable() - Method in class org.protege.editor.core.ui.list.RemovableObjectList.RemovableObjectListItem
 
isEditable() - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSectionRow
Determines if this row is editable.
isEditable() - Method in class org.protege.editor.owl.ui.frame.AnnotationURIList.URIItem
 
isEditable() - Method in class org.protege.editor.owl.ui.frame.AxiomListFrameSectionRow
 
isEditable() - Method in class org.protege.editor.owl.ui.frame.ExplanationFrameSectionRow
 
isEditable() - Method in interface org.protege.editor.owl.ui.frame.OWLFrameSectionRow
Determines if this row is editable.
isEditable() - Method in class org.protege.editor.owl.ui.frame.OWLImportsDeclarationAxiomFrameSectionRow
 
isEditable() - Method in class org.protege.editor.owl.ui.frame.SWRLRuleFrameSectionRow
 
isEditable() - Method in class org.protege.editor.owl.ui.selector.AbstractSelectorPanel
 
isEquivalentClass(OWLDescription, OWLDescription) - Method in class org.protege.editor.owl.model.inference.NoOpReasoner
 
isFilterActive(UsageFilter) - Method in class org.protege.editor.owl.ui.usage.UsagePreferences
 
isFixedHeight() - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSectionRow
 
isFixedHeight() - Method in class org.protege.editor.owl.ui.frame.OWLClassAssertionAxiomIndividualSectionRow
 
isFloatable() - Method in class org.protege.editor.core.ui.view.View
 
isForceReset() - Method in class org.protege.editor.core.ui.view.ViewsPaneMemento
 
isFragmentAutoGenerated() - Method in class org.protege.editor.owl.model.entity.CustomOWLEntityFactory
 
isFragmentAutoGenerated() - Static method in class org.protege.editor.owl.model.entity.EntityCreationPreferences
 
isFunctional(OWLObjectProperty) - Method in class org.protege.editor.owl.model.inference.NoOpReasoner
 
isFunctional(OWLDataProperty) - Method in class org.protege.editor.owl.model.inference.NoOpReasoner
 
isGenerateIDLabel() - Method in class org.protege.editor.owl.model.entity.CustomOWLEntityFactory
 
isGenerateIDLabel() - Static method in class org.protege.editor.owl.model.entity.EntityCreationPreferences
 
isGenerateNameLabel() - Method in class org.protege.editor.owl.model.entity.CustomOWLEntityFactory
 
isGenerateNameLabel() - Static method in class org.protege.editor.owl.model.entity.EntityCreationPreferences
 
isGroupClassesByNameSpace() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.options.OWLVizViewOptions
 
isHeaderVisible() - Method in class org.protege.editor.owl.ui.prefix.PrefixMapperTable
 
isHeaderVisible() - Method in class org.protege.editor.owl.ui.table.BasicOWLTable
By default, the table header isn't visible.
isHiddenAnnotationURI(URI) - Method in class org.protege.editor.owl.model.OWLWorkspace
 
isHighlightActiveOntologyStatements() - Method in class org.protege.editor.owl.ui.renderer.OWLRendererPreferences
 
isHighlightChangedEntities() - Method in class org.protege.editor.owl.ui.renderer.OWLRendererPreferences
 
isHighlightKeyWords() - Method in class org.protege.editor.owl.ui.renderer.OWLRendererPreferences
 
isHighlightUnsatisfiableClasses() - Method in class org.protege.editor.owl.ui.framelist.OWLFrameListRenderer
 
isHighlightUnsatisfiableProperties() - Method in class org.protege.editor.owl.ui.framelist.OWLFrameListRenderer
 
isIncludeAnnotationAxioms() - Method in class org.protege.editor.owl.ui.action.ExportInferredOntologyIncludeAssertedAxiomsPanel
 
isIncludeAnnotations() - Method in class org.protege.editor.owl.ui.action.ExportInferredOntologyWizard
 
isIncludeAssertedLogicalAxioms() - Method in class org.protege.editor.owl.ui.action.ExportInferredOntologyIncludeAssertedAxiomsPanel
 
isIncludeAssertedLogicalAxioms() - Method in class org.protege.editor.owl.ui.action.ExportInferredOntologyWizard
 
isIncludeDay() - Method in class org.protege.editor.owl.ui.ontology.OntologyPreferences
 
isIncludeImports() - Method in interface org.protege.editor.owl.model.OWLModelManager
 
isIncludeImports() - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
 
isIncludeMonth() - Method in class org.protege.editor.owl.ui.ontology.OntologyPreferences
 
isIncludeYear() - Method in class org.protege.editor.owl.ui.ontology.OntologyPreferences
 
isInferred() - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSectionRow
 
isInferred() - Method in interface org.protege.editor.owl.ui.frame.OWLFrameSectionRow
 
isInverseFunctional(OWLObjectProperty) - Method in class org.protege.editor.owl.model.inference.NoOpReasoner
 
isIrreflexive(OWLObjectProperty) - Method in class org.protege.editor.owl.model.inference.NoOpReasoner
 
isLeaf() - Method in class org.protege.editor.owl.ui.tree.OWLObjectTreeNode
 
isLoaded() - Method in class org.protege.editor.owl.ui.tree.OWLObjectTreeNode
 
isMakeSiblingClassesDisjoint() - Method in class org.protege.editor.owl.ui.hierarchy.creation.CreateClassHierarchyWizard
 
isMakeSiblingClassesDisjoint() - Method in class org.protege.editor.owl.ui.hierarchy.creation.MakeSiblingClassesDisjointPanel
 
isModal() - Method in class org.protege.editor.core.ui.wizard.Wizard
Returns the modality of the dialog.
isMultiEditSupported() - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSectionRowObjectEditor
 
isMultiEditSupported() - Method in interface org.protege.editor.owl.ui.frame.OWLFrameSectionRowObjectEditor
 
isMultiEditSupported() - Method in class org.protege.editor.owl.ui.frame.OWLImportsDeclarationEditor
 
isMultiSelect() - Method in class org.protege.editor.owl.ui.ontology.wizard.AbstractSelectOntologiesPage
 
isMultiSelect() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.SelectSourceOntologiesPanel
 
isMutable(OWLOntology) - Method in interface org.protege.editor.owl.model.OWLModelManager
Determines if the specified ontology is mutable.
isMutable(OWLOntology) - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
 
isObfuscateNames() - Method in class org.protege.editor.owl.ui.frame.ExplanationFrame
 
isOSX() - Static method in class org.protege.editor.core.ui.util.OSUtils
 
isOWLClassExpected() - Method in exception org.protege.editor.owl.model.description.OWLExpressionParserException
 
isOWLClassView() - Method in class org.protege.editor.owl.ui.view.AbstractOWLClassViewComponent
 
isOWLClassView() - Method in class org.protege.editor.owl.ui.view.AbstractOWLSelectionViewComponent
 
isOWLDataPropertyExpected() - Method in exception org.protege.editor.owl.model.description.OWLExpressionParserException
 
isOWLDataPropertyView() - Method in class org.protege.editor.owl.ui.view.AbstractOWLDataPropertyViewComponent
 
isOWLDataPropertyView() - Method in class org.protege.editor.owl.ui.view.AbstractOWLSelectionViewComponent
 
isOWLDataPropertyView() - Method in class org.protege.editor.owl.ui.view.OWLDataPropertyHierarchyViewComponent
 
isOWLDatatypeView() - Method in class org.protege.editor.owl.ui.view.AbstractOWLSelectionViewComponent
 
isOWLIndividualExpected() - Method in exception org.protege.editor.owl.model.description.OWLExpressionParserException
 
isOWLIndividualView() - Method in class org.protege.editor.owl.ui.view.AbstractOWLIndividualViewComponent
 
isOWLIndividualView() - Method in class org.protege.editor.owl.ui.view.AbstractOWLSelectionViewComponent
 
isOWLObjectPropertyExpected() - Method in exception org.protege.editor.owl.model.description.OWLExpressionParserException
 
isOWLObjectPropertyView() - Method in class org.protege.editor.owl.ui.view.AbstractOWLObjectPropertyViewComponent
 
isOWLObjectPropertyView() - Method in class org.protege.editor.owl.ui.view.AbstractOWLSelectionViewComponent
 
isOWLObjectPropertyView() - Method in class org.protege.editor.owl.ui.view.OWLObjectPropertyHierarchyViewComponent
 
isPinned() - Method in class org.protege.editor.core.ui.view.View
Determines whether the view is "pinned".
isPinned() - Method in class org.protege.editor.core.ui.view.ViewComponent
 
isPreferred(Object) - Method in class org.protege.editor.owl.ui.frame.OWLAnnonymousIndividualAnnotationValueEditor
 
isPreferred(Object) - Method in interface org.protege.editor.owl.ui.frame.OWLAnnotationValueEditor
 
isPreferred(Object) - Method in class org.protege.editor.owl.ui.frame.OWLConstantEditor
 
isPreferred(Object) - Method in class org.protege.editor.owl.ui.frame.OWLIndividualAnnotationValueEditor
 
isProtegeProperty(String) - Static method in class org.protege.editor.core.plugin.PluginProperties
 
isRasterFormat() - Method in class uk.ac.man.cs.mig.coode.owlviz.export.DotExportFormat
Determines if the export is a raster format or not.
isRasterFormat() - Method in interface uk.ac.man.cs.mig.util.graph.export.ExportFormat
Determines if the export is a raster format or not.
isRasterFormat() - Method in class uk.ac.man.cs.mig.util.graph.export.impl.AbstractRasterFormat
Determines if the export is a raster format or not.
isRasterFormat() - Method in class uk.ac.man.cs.mig.util.graph.export.impl.AbstractVectorFormat
Determines if the export is a raster format or not.
isRealised() - Method in class org.protege.editor.owl.model.inference.NoOpReasoner
 
isReflexive(OWLObjectProperty) - Method in class org.protege.editor.owl.model.inference.NoOpReasoner
 
isRenderDomainAxiomsAsGCIs() - Method in class org.protege.editor.owl.ui.renderer.OWLRendererPreferences
 
isRenderExpression() - Method in class org.protege.editor.owl.ui.renderer.OWLCellRenderer
 
isRenderHyperlinks() - Method in class org.protege.editor.owl.ui.renderer.OWLRendererPreferences
 
isRenderIcon() - Method in class org.protege.editor.owl.ui.renderer.OWLCellRenderer
 
isRenderPrefixes() - Method in class org.protege.editor.owl.ui.renderer.OWLRendererPreferences
 
isRoot() - Method in class org.protege.editor.owl.model.hierarchy.tabbed.Edge
 
isRoot() - Method in class org.protege.editor.owl.ui.tree.OWLObjectTreeNode
 
isSatisfiable(OWLDescription) - Method in class org.protege.editor.owl.model.inference.NoOpReasoner
 
isSelected(PluginInfo) - Method in interface org.protege.editor.core.update.DownloadsProvider
 
isSelected(PluginInfo) - Method in class org.protege.editor.core.update.RemotePluginRegistry
 
isSelected(PluginInfo) - Method in class org.protege.editor.core.update.UpdatesProvider
 
isShowAncestorClasses() - Method in class org.coode.dlquery.ResultsList
 
isShowDescendantClasses() - Method in class org.coode.dlquery.ResultsList
 
isShowEquivalentClasses() - Method in class org.coode.dlquery.ResultsList
 
isShowInstances() - Method in class org.coode.dlquery.ResultsList
 
isShown(Object) - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultVisualisedObjectManager
Determines whether the sepcified object is in the list of object being visualised.
isShown(Object) - Method in interface uk.ac.man.cs.mig.util.graph.controller.VisualisedObjectManager
Determines whether the sepcified object is in the list of object being visualised.
isShowSubClasses() - Method in class org.coode.dlquery.ResultsList
 
isShowSuperClasses() - Method in class org.coode.dlquery.ResultsList
 
isSingleton(Bundle) - Static method in class org.protege.editor.core.BundleManager
 
isSplitable() - Method in class org.protege.editor.core.ui.view.View
 
isStartElementPresent() - Method in class org.protege.editor.owl.model.repository.OntologyURIExtractor
 
isSubClassOf(OWLDescription, OWLDescription) - Method in class org.protege.editor.owl.model.inference.NoOpReasoner
 
isSuitable(OntologyLibraryMemento) - Method in class org.protege.editor.owl.model.library.folder.FolderOntologyLibraryFactory
 
isSuitable(OntologyLibraryMemento) - Method in interface org.protege.editor.owl.model.library.OntologyLibraryFactory
Determines if the factory can create an ontology library from the specified memento.
isSuitableFor(AxiomType) - Method in interface org.protege.editor.owl.ui.editor.OWLDescriptionEditorPlugin
 
isSuitableFor(AxiomType) - Method in class org.protege.editor.owl.ui.editor.OWLDescriptionEditorPluginImpl
 
isSymmetric(OWLObjectProperty) - Method in class org.protege.editor.owl.model.inference.NoOpReasoner
 
isSynchronizing() - Method in class org.protege.editor.core.ui.view.ViewComponent
 
isSyncronizing() - Method in class org.protege.editor.core.ui.view.View
 
isTrackerMode() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.options.ModeOptionsPanel
 
isTrackerMode() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.options.OWLVizViewOptions
 
isTrackingModeDefault() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizPreferences
 
isTransitive(OWLObjectProperty) - Method in class org.protege.editor.owl.model.inference.NoOpReasoner
 
isType(EventType) - Method in class org.protege.editor.owl.model.event.OWLModelManagerChangeEvent
 
isUseEntities() - Method in class org.protege.editor.owl.model.XMLWriterPrefs
 
isUseExpressionCompletion() - Method in class org.protege.editor.owl.ui.clsdescriptioneditor.ExpressionEditorPreferences
 
isUseOrdering() - Method in class org.protege.editor.owl.ui.frame.ExplanationFrame
 
isUserCreatable() - Method in interface org.protege.editor.core.ui.view.ViewComponentPlugin
 
isUserCreatable() - Method in class org.protege.editor.core.ui.view.ViewComponentPluginAdapter
 
isUserCreatable() - Method in class org.protege.editor.core.ui.view.ViewComponentPluginJPFImpl
 
isUseRegularExpressions() - Method in class org.protege.editor.owl.model.find.EntityFinderPreferences
 
isUseThatKeyword() - Method in class org.protege.editor.owl.ui.renderer.OWLRendererPreferences
 
isValid(Bundle) - Method in class org.protege.editor.core.update.PluginInfoDocument
 
isValid - Variable in class org.protege.editor.owl.ui.selector.AbstractSelectorPanel
 
isValidDescriptor(EditorKitDescriptor) - Method in interface org.protege.editor.core.editorkit.EditorKitFactory
Determines if the editor kit descriptor is valid.
isValidDescriptor(EditorKitDescriptor) - Method in class org.protege.editor.owl.OWLEditorKitFactory
 
isValidInput() - Method in class org.protege.editor.owl.ui.editor.AbstractRestrictionCreatorPanel
 
isValidInput() - Method in class org.protege.editor.owl.ui.editor.OWLClassSelectorWrapper
 
isValidInput() - Method in interface org.protege.editor.owl.ui.editor.OWLDescriptionEditor
 
isValidInput() - Method in class org.protege.editor.owl.ui.editor.OWLDescriptionExpressionEditor
 
isValidURI() - Method in class org.protege.editor.core.ui.OpenFromURIPanel
 
isVisible(OWLOntology) - Method in interface org.protege.editor.owl.model.OntologyVisibilityManager
 
isVisible(OWLOntology) - Method in class org.protege.editor.owl.model.OntologyVisibilityManagerImpl
 
isWellFormed() - Method in class org.protege.editor.owl.ui.clsdescriptioneditor.ExpressionEditor
 
isWindows() - Static method in class org.protege.editor.core.ui.util.OSUtils
 
isWrap() - Method in class org.protege.editor.owl.ui.renderer.OWLCellRenderer
 
itemChecked(Object) - Method in interface org.protege.editor.core.ui.util.CheckList.CheckListListener
 
itemUnchecked(Object) - Method in interface org.protege.editor.core.ui.util.CheckList.CheckListListener
 
IterativeAutoIDGenerator - Class in org.protege.editor.owl.model.entity
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Jul 25, 2008

IterativeAutoIDGenerator() - Constructor for class org.protege.editor.owl.model.entity.IterativeAutoIDGenerator
 
iterator() - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultVisualisedObjectManager
Retrives an iterator, which can be used to traverse the list of visualised objects.
iterator() - Method in interface uk.ac.man.cs.mig.util.graph.controller.VisualisedObjectManager
Retrives an iterator, which can be used to traverse the list of visualised objects.

J

JAR_SEPARATOR - Static variable in class org.protege.editor.core.util.BundleBuilder
 
JavaBackedPreferencesImpl - Class in org.protege.editor.core.prefs
Author: Matthew Horridge
The University Of Manchester
Information Management Group
Date: 12-Aug-2008

JavaBackedPreferencesImpl(String, String) - Constructor for class org.protege.editor.core.prefs.JavaBackedPreferencesImpl
 
JavaBackedPreferencesManagerImpl - Class in org.protege.editor.core.prefs
Author: Matthew Horridge
The University Of Manchester
Information Management Group
Date: 12-Aug-2008

JavaBackedPreferencesManagerImpl() - Constructor for class org.protege.editor.core.prefs.JavaBackedPreferencesManagerImpl
 
jj_nt - Variable in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.DotParser
 
jjFillToken() - Method in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.DotParserTokenManager
 
jjstrLiteralImages - Static variable in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.DotParserTokenManager
 
JOptionPaneEx - Class in org.protege.editor.core.ui.util
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 21-Sep-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

JOptionPaneEx() - Constructor for class org.protege.editor.core.ui.util.JOptionPaneEx
 
JPEGExportFormat - Class in uk.ac.man.cs.mig.util.graph.export.impl
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Feb 23, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

JPEGExportFormat() - Constructor for class uk.ac.man.cs.mig.util.graph.export.impl.JPEGExportFormat
 
JPFUtil - Class in org.protege.editor.core.plugin
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Mar 30, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

JPFUtil() - Constructor for class org.protege.editor.core.plugin.JPFUtil
 

K

KEY - Static variable in interface org.protege.editor.owl.ui.framelist.ExplanationHandler
 
KeywordColourMap - Class in org.protege.editor.owl.ui.renderer
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Sep 23, 2008

KeywordColourMap() - Constructor for class org.protege.editor.owl.ui.renderer.KeywordColourMap
 
killCurrentClassification() - Method in interface org.protege.editor.owl.model.inference.OWLReasonerManager
 
killCurrentClassification() - Method in class org.protege.editor.owl.model.inference.OWLReasonerManagerImpl
 
killProcess() - Method in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.DotProcess
Kills the native dot process (if it was started successfully).
kind - Variable in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.Token
An integer that describes the kind of this token.
KWDIGRAPH - Static variable in interface uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.DotParserConstants
 
KWEDGE - Static variable in interface uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.DotParserConstants
 
KWGRAPH - Static variable in interface uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.DotParserConstants
 
KWNODE - Static variable in interface uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.DotParserConstants
 
KWSTRICT - Static variable in interface uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.DotParserConstants
 
KWSUBGRAPH - Static variable in interface uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.DotParserConstants
 

L

LABEL - Static variable in class org.protege.editor.owl.ui.frame.OWLClassAssertionAxiomIndividualSection
 
LABEL - Static variable in class org.protege.editor.owl.ui.frame.OWLClassAssertionAxiomTypeFrameSection
 
LABEL - Static variable in class org.protege.editor.owl.ui.frame.OWLDataPropertyAssertionAxiomFrameSection
 
LABEL - Static variable in class org.protege.editor.owl.ui.frame.OWLDataPropertyRangeFrameSection
 
LABEL - Static variable in class org.protege.editor.owl.ui.frame.OWLDifferentIndividualsAxiomFrameSection
 
LABEL - Static variable in class org.protege.editor.owl.ui.frame.OWLDisjointClassesAxiomFrameSection
 
LABEL - Static variable in class org.protege.editor.owl.ui.frame.OWLDisjointDataPropertiesFrameSection
 
LABEL - Static variable in class org.protege.editor.owl.ui.frame.OWLDisjointObjectPropertiesFrameSection
 
LABEL - Static variable in class org.protege.editor.owl.ui.frame.OWLEquivalentDataPropertiesFrameSection
 
LABEL - Static variable in class org.protege.editor.owl.ui.frame.OWLEquivalentObjectPropertiesAxiomFrameSection
 
LABEL - Static variable in class org.protege.editor.owl.ui.frame.OWLImportsDeclarationFrameSection
 
LABEL - Static variable in class org.protege.editor.owl.ui.frame.OWLIndirectImportsFrameSection
 
LABEL - Static variable in class org.protege.editor.owl.ui.frame.OWLInverseObjectPropertiesAxiomFrameSection
 
LABEL - Static variable in class org.protege.editor.owl.ui.frame.OWLNegativeDataPropertyAssertionFrameSection
 
LABEL - Static variable in class org.protege.editor.owl.ui.frame.OWLNegativeObjectPropertyAssertionFrameSection
 
LABEL - Static variable in class org.protege.editor.owl.ui.frame.OWLObjectPropertyAssertionAxiomFrameSection
 
LABEL - Static variable in class org.protege.editor.owl.ui.frame.OWLObjectPropertyRangeFrameSection
 
LABEL - Static variable in class org.protege.editor.owl.ui.frame.OWLOntologyAnnotationAxiomFrameSection
 
LABEL - Static variable in class org.protege.editor.owl.ui.frame.OWLPropertyChainAxiomFrameSection
 
LABEL - Static variable in class org.protege.editor.owl.ui.frame.OWLSameIndividualsAxiomFrameSection
 
LABEL - Static variable in class org.protege.editor.owl.ui.frame.OWLSubDataPropertyAxiomSuperPropertyFrameSection
 
LABEL - Static variable in class org.protege.editor.owl.ui.frame.OWLSubObjectPropertyAxiomSuperPropertyFrameSection
 
LABEL - Static variable in class org.protege.editor.owl.ui.frame.property.AbstractPropertyDomainFrameSection
 
LABEL_KEY - Static variable in class org.protege.editor.core.editorkit.EditorKitDescriptor
 
LABEL_PARAM - Static variable in class org.protege.editor.core.editorkit.EditorKitFactoryPlugin
 
LABEL_PARAM - Static variable in class org.protege.editor.core.ui.preferences.PreferencesPanelPluginJPFImpl
 
LABEL_PARAM - Static variable in class org.protege.editor.core.ui.view.ViewComponentPluginJPFImpl
 
LabelDescriptor - Interface in org.protege.editor.owl.model.entity
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Jul 28, 2008

LAYOUT_DIRECTION - Static variable in class uk.ac.man.cs.mig.coode.owlviz.ui.options.OWLVizProperties
Deprecated. The direction of the graph layout.
LAYOUT_DIRECTION - Static variable in class uk.ac.man.cs.mig.util.graph.outputrenderer.impl.DotOutputGraphRenderer
 
LAYOUT_LEFT_TO_RIGHT - Static variable in interface uk.ac.man.cs.mig.util.graph.layout.GraphLayoutEngine
 
LAYOUT_TOP_TO_BOTTOM - Static variable in interface uk.ac.man.cs.mig.util.graph.layout.GraphLayoutEngine
 
layoutContainer(Container) - Method in class org.protege.editor.core.ui.preferences.PreferencesPanelLayoutManager
 
LayoutDirectionOptionsPage - Class in uk.ac.man.cs.mig.coode.owlviz.ui.options
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Mar 1, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

LayoutDirectionOptionsPage(Controller, Controller) - Constructor for class uk.ac.man.cs.mig.coode.owlviz.ui.options.LayoutDirectionOptionsPage
 
layoutGraph(Graph) - Method in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.DotGraphLayoutEngine
Lays out the specified Graph
layoutGraph(Graph) - Method in interface uk.ac.man.cs.mig.util.graph.layout.GraphLayoutEngine
Lays out the specified Graph
layoutGraph(Graph) - Method in class uk.ac.man.cs.mig.util.graph.layout.impl.DefaultGraphLayoutEngine
Lays out the specified Graph
LayoutSpacingOptionsPage - Class in uk.ac.man.cs.mig.coode.owlviz.ui.options
Deprecated.  
LayoutSpacingOptionsPage(DotGraphLayoutEngine, DotGraphLayoutEngine) - Constructor for class uk.ac.man.cs.mig.coode.owlviz.ui.options.LayoutSpacingOptionsPage
Deprecated.  
LEFT_RESULTS_VIEW - Static variable in class org.protege.editor.core.ui.workspace.Workspace
 
LexicalError(boolean, int, int, int, String, char) - Static method in error uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.TokenMgrError
Returns a detailed message for the Error when it is thrown by the token manager to indicate a lexical error.
lexStateNames - Static variable in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.DotParserTokenManager
 
LibraryOntologiesList - Class in org.protege.editor.owl.ui.ontology.imports.wizard
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 12-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

LibraryOntologiesList(OWLModelManager) - Constructor for class org.protege.editor.owl.ui.ontology.imports.wizard.LibraryOntologiesList
 
LibraryPage - Class in org.protege.editor.owl.ui.ontology.imports.wizard
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 12-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

LibraryPage(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.ontology.imports.wizard.LibraryPage
 
LibraryVerifier - Class in org.protege.editor.owl.ui.ontology.imports.wizard
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 13-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

LibraryVerifier(OWLModelManager, Set<URI>) - Constructor for class org.protege.editor.owl.ui.ontology.imports.wizard.LibraryVerifier
 
line - Variable in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.SimpleCharStream
 
LinkedObjectComponent - Interface in org.protege.editor.owl.ui.renderer
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 03-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

LinkedObjectComponentMediator - Class in org.protege.editor.owl.ui.renderer
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 03-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

LinkedObjectComponentMediator(OWLEditorKit, LinkedObjectComponent) - Constructor for class org.protege.editor.owl.ui.renderer.LinkedObjectComponentMediator
 
LinkLabel - Class in org.protege.editor.core.ui.util
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 26-May-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

LinkLabel(String, ActionListener) - Constructor for class org.protege.editor.core.ui.util.LinkLabel
 
ListenerManager<L> - Class in org.protege.editor.owl.model.util
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 05-Mar-2007

ListenerManager() - Constructor for class org.protege.editor.owl.model.util.ListenerManager
 
listeners - Variable in class uk.ac.man.cs.mig.util.graph.model.impl.AbstractGraphModel
 
load() - Method in class org.protege.editor.core.editorkit.RecentEditorKitManager
 
load() - Method in class org.protege.editor.core.ui.workspace.TabbedWorkspaceStateManager
 
load() - Method in class org.protege.editor.owl.ui.renderer.AnnotationRendererPanel
 
loadAndSetupEditorKitFromRepository(OntologyRepository, OntologyRepositoryEntry) - Method in class org.protege.editor.core.ProtegeManager
Loads an ontology from an ontology repository.
loadAndSetupEditorKitFromURI(EditorKitFactoryPlugin, URI) - Method in class org.protege.editor.core.ProtegeManager
 
loadChildrenIfNecessary() - Method in class org.protege.editor.owl.ui.tree.OWLObjectTreeNode
 
loadChildrenIfNecessary() - Method in class org.protege.editor.owl.ui.tree.OWLObjectTreeRootNode
 
LoadedOntologyImportVerifier - Class in org.protege.editor.owl.ui.ontology.imports.wizard
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 01-Sep-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

LoadedOntologyImportVerifier(Set<OWLOntology>) - Constructor for class org.protege.editor.owl.ui.ontology.imports.wizard.LoadedOntologyImportVerifier
 
LoadedOntologyPage - Class in org.protege.editor.owl.ui.ontology.imports.wizard
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 01-Sep-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

LoadedOntologyPage(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.ontology.imports.wizard.LoadedOntologyPage
 
loadIcon(String) - Static method in class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizIcons
Loads and caches an ImageIcon that represents the icon that corresponds to the specified file name.
LoadIntoCurrentModelAction - Class in org.protege.editor.owl.ui.action
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 21-May-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

LoadIntoCurrentModelAction() - Constructor for class org.protege.editor.owl.ui.action.LoadIntoCurrentModelAction
 
loadOntologies(Set<OWLOntology>) - Method in class org.protege.editor.owl.model.inference.NoOpReasoner
 
loadOntology(URI) - Method in interface org.protege.editor.owl.model.OWLModelManager
Loads the ontology that has the specified ontology URI.
loadOntology(URI) - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
Loads the ontology that has the specified ontology URI.
loadOntologyFromPhysicalURI(URI) - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
A convenience method that loads an ontology from a file The location of the file is specified by the URI argument.
loadOntologyLibraries() - Method in class org.protege.editor.owl.model.library.OntologyLibraryLoader
 
loadOntologyLibraries(List<OntologyLibraryMemento>) - Method in class org.protege.editor.owl.model.library.OntologyLibraryLoader
 
loadOntologyURIMap(File) - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
Loads the ontology URI map with the ontologies that are found in the specified folder.
loadPlugins() - Method in class org.protege.editor.core.BundleManager
 
loadProperties() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.options.OWLVizProperties
Deprecated. Loads the properties from file.
loadProperties() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizView
 
loadRecentLocations() - Method in class org.protege.editor.owl.ui.ontology.wizard.create.PhysicalLocationPanel
 
LOC_X - Static variable in class org.protege.editor.core.ui.workspace.WorkspaceFrame
 
LOC_Y - Static variable in class org.protege.editor.core.ui.workspace.WorkspaceFrame
 
LocalFileImportVerifier - Class in org.protege.editor.owl.ui.ontology.imports.wizard
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 13-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

LocalFileImportVerifier(OWLEditorKit, File) - Constructor for class org.protege.editor.owl.ui.ontology.imports.wizard.LocalFileImportVerifier
 
LocalFilePage - Class in org.protege.editor.owl.ui.ontology.imports.wizard
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 12-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

LocalFilePage(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.ontology.imports.wizard.LocalFilePage
 
LOCATION_PARAM - Static variable in class org.protege.editor.core.ui.view.ViewComponentPluginJPFImpl
 
logChanges(List<? extends OWLOntologyChange>) - Method in interface org.protege.editor.owl.model.history.HistoryManager
 
logChanges(List<? extends OWLOntologyChange>) - Method in class org.protege.editor.owl.model.history.HistoryManagerImpl
 
logEquivalences(Logger, Level) - Method in class org.protege.editor.owl.model.hierarchy.roots.EquivalenceRelation
 
logError(Throwable) - Method in class org.protege.editor.core.ui.error.ErrorLog
 
logger - Static variable in class org.protege.editor.core.ProtegeManager
 
logger - Static variable in class org.protege.editor.core.ui.view.ViewsPane
 
logger - Static variable in class org.protege.editor.core.ui.workspace.WorkspaceViewsTab
 
logger - Static variable in class org.protege.editor.owl.model.hierarchy.AbstractOWLOntologyObjectHierarchyProvider
 
LOOK_AND_FEEL_CLASS_NAME - Static variable in class org.protege.editor.core.ProtegeApplication
 
LOOK_AND_FEEL_KEY - Static variable in class org.protege.editor.core.ProtegeApplication
 

M

main(String[]) - Static method in class org.protege.editor.core.ui.list.MList
 
main(String[]) - Static method in class org.protege.editor.core.ui.list.RemovableObjectList
 
main(String[]) - Static method in class org.protege.editor.core.ui.preferences.node.PreferenceNodeGroupPanel
 
main(String[]) - Static method in class org.protege.editor.core.ui.preferences.PreferencesPanelLayoutManager
 
main(String[]) - Static method in class org.protege.editor.core.ui.util.CheckList
 
main(String[]) - Static method in class org.protege.editor.core.ui.util.CheckTable
 
main(String[]) - Static method in class org.protege.editor.core.ui.util.FilePathPanel
 
main(String[]) - Static method in class org.protege.editor.core.ui.util.FileURIPanel
 
main(String[]) - Static method in class org.protege.editor.core.ui.util.LinkLabel
 
main(String[]) - Static method in class org.protege.editor.owl.ui.action.AmalgamateDisjointClassesAction
 
main(String[]) - Static method in class org.protege.editor.owl.ui.action.ExportInferredOntologyPanel
 
main(String[]) - Static method in class org.protege.editor.owl.ui.frame.Test
 
main(String[]) - Static method in class org.protege.editor.owl.ui.metrics.DLNameKeyPanel
 
main(String[]) - Static method in class org.protege.editor.owl.ui.ontology.imports.missing.MissingImportWizard
 
main(String[]) - Static method in class org.protege.editor.owl.ui.ontology.imports.wizard.ImportTypePage
 
main(String[]) - Static method in class uk.ac.man.cs.mig.coode.owlviz.apitest.Test
 
main(String[]) - Static method in class uk.ac.man.cs.mig.util.popup.test.PopupComponentTest
 
MainToolBarActionPluginLoader - Class in org.protege.editor.core.ui.toolbar
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Mar 28, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

MainToolBarActionPluginLoader(EditorKit) - Constructor for class org.protege.editor.core.ui.toolbar.MainToolBarActionPluginLoader
 
MainToolBarBuilder - Class in org.protege.editor.core.ui.toolbar
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Mar 28, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

MainToolBarBuilder(EditorKit) - Constructor for class org.protege.editor.core.ui.toolbar.MainToolBarBuilder
 
MakeAllIndividualsDifferent - Class in org.protege.editor.owl.ui.action
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 01-Sep-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

MakeAllIndividualsDifferent() - Constructor for class org.protege.editor.owl.ui.action.MakeAllIndividualsDifferent
 
MakePrimitiveSiblingsDisjoint - Class in org.protege.editor.owl.ui.action
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 30-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

MakePrimitiveSiblingsDisjoint() - Constructor for class org.protege.editor.owl.ui.action.MakePrimitiveSiblingsDisjoint
 
MakeSiblingClassesDisjointPanel - Class in org.protege.editor.owl.ui.hierarchy.creation
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 18-Jul-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

MakeSiblingClassesDisjointPanel(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.hierarchy.creation.MakeSiblingClassesDisjointPanel
 
ManchesterOWLExpressionCheckerFactory - Class in org.protege.editor.owl.ui.clsdescriptioneditor
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Jul 23, 2008

ManchesterOWLExpressionCheckerFactory(OWLModelManager) - Constructor for class org.protege.editor.owl.ui.clsdescriptioneditor.ManchesterOWLExpressionCheckerFactory
 
ManchesterRepository - Class in org.protege.editor.owl.model.repository
Author: Matthew Horridge
The University Of Manchester
Information Management Group
Date: 18-Oct-2008

ManchesterRepository(String, URI) - Constructor for class org.protege.editor.owl.model.repository.ManchesterRepository
 
ManchesterSyntaxFrameView - Class in org.protege.editor.owl.ui.view
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Nov 26, 2008

ManchesterSyntaxFrameView() - Constructor for class org.protege.editor.owl.ui.view.ManchesterSyntaxFrameView
 
ManchesterSyntaxRenderingViewComponent - Class in org.protege.editor.owl.ui.view
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 13-Aug-2007

ManchesterSyntaxRenderingViewComponent() - Constructor for class org.protege.editor.owl.ui.view.ManchesterSyntaxRenderingViewComponent
 
mappingAdded(String, String) - Method in interface org.protege.editor.owl.model.namespace.NamespaceManagerListener
 
mappingRemoved(String, String) - Method in interface org.protege.editor.owl.model.namespace.NamespaceManagerListener
 
matches(IExtension) - Method in class org.protege.editor.core.plugin.DefaultPluginExtensionMatcher
 
matches(IExtension) - Method in interface org.protege.editor.core.plugin.PluginExtensionMatcher
Determines whether the specified Extension constitutes a "match" or not.
matches(IExtension) - Method in class org.protege.editor.core.plugin.PluginParameterExtensionMatcher
Determines whether the specified Extension constitutes a "match" or not.
MatchRendererLabelDescriptor - Class in org.protege.editor.owl.model.entity
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Jul 28, 2008

MatchRendererLabelDescriptor() - Constructor for class org.protege.editor.owl.model.entity.MatchRendererLabelDescriptor
 
MAX_EDITOR_KITS - Static variable in class org.protege.editor.core.editorkit.RecentEditorKitManager
 
MAX_NUMBER_OF_ERRORS - Static variable in class org.protege.editor.core.ui.error.ErrorLog
 
MAXCARDI_NAME - Static variable in class uk.ac.man.cs.mig.coode.owlviz.ui.renderer.OWLClsNodeRenderer
 
MAXIMUM_ZOOM - Static variable in class uk.ac.man.cs.mig.util.graph.ui.impl.DefaultGraphView
 
maximumLayoutSize(Container) - Method in class org.protege.editor.core.ui.preferences.PreferencesPanelLayoutManager
 
maxNextCharInd - Variable in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.SimpleCharStream
 
MenuActionPlugin - Interface in org.protege.editor.core.ui.menu
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Mar 28, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

A ProtegeActionPlugin that is extends to to represent actions that appear as menu items in the UI.

MenuActionPluginJPFImpl - Class in org.protege.editor.core.ui.menu
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Mar 27, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

An implementation of the MenuActionPlugin which uses the Java Plugin Framework to provide the details of the plugin.

MenuActionPluginJPFImpl(EditorKit, IExtension) - Constructor for class org.protege.editor.core.ui.menu.MenuActionPluginJPFImpl
 
MenuBuilder - Class in org.protege.editor.core.ui.menu
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Mar 27, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

The MenuBuilder constructs a JMenuBar based on the installed menu action plugins.

MenuBuilder(EditorKit) - Constructor for class org.protege.editor.core.ui.menu.MenuBuilder
 
merge(Collection<X>) - Method in class org.protege.editor.owl.model.hierarchy.roots.EquivalenceRelation
 
mergeOntologies() - Method in class org.protege.editor.owl.model.refactor.ontology.OntologyMerger
 
MergeOntologiesAction - Class in org.protege.editor.owl.ui.action
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 02-Jul-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

MergeOntologiesAction() - Constructor for class org.protege.editor.owl.ui.action.MergeOntologiesAction
 
MergeOntologiesWizard - Class in org.protege.editor.owl.ui.ontology.wizard.merge
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 02-Jul-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

MergeOntologiesWizard(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.ontology.wizard.merge.MergeOntologiesWizard
 
MergeTypePage - Class in org.protege.editor.owl.ui.ontology.wizard.merge
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 02-Jul-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

MergeTypePage(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.ontology.wizard.merge.MergeTypePage
 
Metric - Class in org.protege.editor.owl.ui.metrics
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 20-Feb-2007

Metric(String) - Constructor for class org.protege.editor.owl.ui.metrics.Metric
 
MetricsPanel - Class in org.protege.editor.owl.ui.metrics
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 29-Oct-2007

MetricsPanel(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.metrics.MetricsPanel
 
MetricsTableModel - Class in org.protege.editor.owl.ui.metrics
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 29-Jul-2007

MetricsTableModel(OWLMetricManager) - Constructor for class org.protege.editor.owl.ui.metrics.MetricsTableModel
 
MetricsTreeNode - Class in org.protege.editor.owl.ui.metrics
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 20-Feb-2007

MetricsTreeNode(Metric) - Constructor for class org.protege.editor.owl.ui.metrics.MetricsTreeNode
 
MigrationStartPanel - Class in org.protege.editor.owl.ui.ontology.migration
Deprecated.  
MigrationStartPanel(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.ontology.migration.MigrationStartPanel
Deprecated.  
MigrationWizard - Class in org.protege.editor.owl.ui.ontology.migration
Deprecated.  
MigrationWizard(Frame, OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.ontology.migration.MigrationWizard
Deprecated.  
MINCARDI_NAME - Static variable in class uk.ac.man.cs.mig.coode.owlviz.ui.renderer.OWLClsNodeRenderer
 
MINIMUM_ZOOM - Static variable in class uk.ac.man.cs.mig.util.graph.ui.impl.DefaultGraphView
 
minimumLayoutSize(Container) - Method in class org.protege.editor.core.ui.preferences.PreferencesPanelLayoutManager
 
MissingImportHandler - Interface in org.protege.editor.owl.model
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 31-Aug-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

The missing import handler is called by the system as a last resort if it cannot obtain a physical URI of an ontology (and hence cannot load the ontology).

MissingImportHandlerImpl - Class in org.protege.editor.owl.model
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 31-Aug-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

A default implementation of the missing import handler.

MissingImportHandlerImpl() - Constructor for class org.protege.editor.owl.model.MissingImportHandlerImpl
 
MissingImportHandlerUI - Class in org.protege.editor.owl.ui.ontology.imports.missing
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 31-Aug-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

MissingImportHandlerUI(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.ontology.imports.missing.MissingImportHandlerUI
 
MissingImportWizard - Class in org.protege.editor.owl.ui.ontology.imports.missing
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 17-Oct-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

MissingImportWizard(Frame, OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.ontology.imports.missing.MissingImportWizard
 
MList - Class in org.protege.editor.core.ui.list
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 24-Feb-2007

MList() - Constructor for class org.protege.editor.core.ui.list.MList
 
MList.MListCellRenderer - Class in org.protege.editor.core.ui.list
 
MList.MListCellRenderer() - Constructor for class org.protege.editor.core.ui.list.MList.MListCellRenderer
 
MList.TestHeader - Class in org.protege.editor.core.ui.list
 
MList.TestHeader() - Constructor for class org.protege.editor.core.ui.list.MList.TestHeader
 
MList.TestItem - Class in org.protege.editor.core.ui.list
 
MList.TestItem(String) - Constructor for class org.protege.editor.core.ui.list.MList.TestItem
 
MListAddButton - Class in org.protege.editor.core.ui.list
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 24-Feb-2007

MListAddButton(ActionListener) - Constructor for class org.protege.editor.core.ui.list.MListAddButton
 
MListButton - Class in org.protege.editor.core.ui.list
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 24-Feb-2007

MListButton(String, Color, ActionListener) - Constructor for class org.protege.editor.core.ui.list.MListButton
 
MListButton(String, Color) - Constructor for class org.protege.editor.core.ui.list.MListButton
 
MListDeleteButton - Class in org.protege.editor.core.ui.list
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 24-Feb-2007

MListDeleteButton(ActionListener) - Constructor for class org.protege.editor.core.ui.list.MListDeleteButton
 
MListEditButton - Class in org.protege.editor.core.ui.list
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 24-Feb-2007

MListEditButton(ActionListener) - Constructor for class org.protege.editor.core.ui.list.MListEditButton
 
MListItem - Interface in org.protege.editor.core.ui.list
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 24-Feb-2007

MListSectionHeader - Interface in org.protege.editor.core.ui.list
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 24-Feb-2007

modelChanged(GraphModelEvent) - Method in interface uk.ac.man.cs.mig.util.graph.event.GraphModelListener
Fired when the model has changed drastically.
ModelManager - Interface in org.protege.editor.core
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Mar 16, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

ModelManagerEvent - Class in org.protege.editor.core
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Mar 16, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

ModelManagerEvent(ModelManager, ModelManagerEvent.EventType) - Constructor for class org.protege.editor.core.ModelManagerEvent
 
ModelManagerEvent.EventType - Enum in org.protege.editor.core
 
ModelManagerListener - Interface in org.protege.editor.core
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Mar 16, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

ModeOptionsPage - Class in uk.ac.man.cs.mig.coode.owlviz.ui.options
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Dec 10, 2008

ModeOptionsPage(OWLVizViewOptions) - Constructor for class uk.ac.man.cs.mig.coode.owlviz.ui.options.ModeOptionsPage
 
ModeOptionsPanel - Class in uk.ac.man.cs.mig.coode.owlviz.ui.options
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Dec 10, 2008

ModeOptionsPanel() - Constructor for class uk.ac.man.cs.mig.coode.owlviz.ui.options.ModeOptionsPanel
 
move(N, N, N) - Method in interface org.protege.editor.owl.ui.tree.OWLTreeDragAndDropHandler
 
move(N, N, N) - Method in class org.protege.editor.owl.ui.view.OWLPropertyTreeDropHandler
 
MoveAnnotationAxiomsByURIKit - Class in org.protege.editor.owl.ui.ontology.wizard.move.byannotation
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Nov 28, 2008

MoveAnnotationAxiomsByURIKit() - Constructor for class org.protege.editor.owl.ui.ontology.wizard.move.byannotation.MoveAnnotationAxiomsByURIKit
 
MoveAxiomsByProfileKit - Class in org.protege.editor.owl.ui.ontology.wizard.move.byprofile
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Dec 3, 2008

MoveAxiomsByProfileKit() - Constructor for class org.protege.editor.owl.ui.ontology.wizard.move.byprofile.MoveAxiomsByProfileKit
 
MoveAxiomsByReferenceKit - Class in org.protege.editor.owl.ui.ontology.wizard.move.byreference
Author: Matthew Horridge
The University Of Manchester
Information Management Group
Date: 23-Sep-2008

MoveAxiomsByReferenceKit() - Constructor for class org.protege.editor.owl.ui.ontology.wizard.move.byreference.MoveAxiomsByReferenceKit
 
MoveAxiomsByTypeKit - Class in org.protege.editor.owl.ui.ontology.wizard.move.bytype
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Nov 28, 2008

MoveAxiomsByTypeKit() - Constructor for class org.protege.editor.owl.ui.ontology.wizard.move.bytype.MoveAxiomsByTypeKit
 
MoveAxiomsKit - Class in org.protege.editor.owl.ui.ontology.wizard.move
Author: Matthew Horridge
The University Of Manchester
Information Management Group
Date: 11-Sep-2008

Provides a kit to select axioms to be moved from some source ontologies to a target ontology.
MoveAxiomsKit() - Constructor for class org.protege.editor.owl.ui.ontology.wizard.move.MoveAxiomsKit
 
MoveAxiomsKitConfigurationPanel - Class in org.protege.editor.owl.ui.ontology.wizard.move
Author: Matthew Horridge
The University Of Manchester
Information Management Group
Date: 19-Sep-2008

MoveAxiomsKitConfigurationPanel() - Constructor for class org.protege.editor.owl.ui.ontology.wizard.move.MoveAxiomsKitConfigurationPanel
 
MoveAxiomsKitPlugin - Interface in org.protege.editor.owl.ui.ontology.wizard.move
Author: Matthew Horridge
The University Of Manchester
Information Management Group
Date: 11-Sep-2008

MoveAxiomsKitPluginImpl - Class in org.protege.editor.owl.ui.ontology.wizard.move
Author: Matthew Horridge
The University Of Manchester
Information Management Group
Date: 11-Sep-2008

MoveAxiomsKitPluginImpl(OWLEditorKit, IExtension) - Constructor for class org.protege.editor.owl.ui.ontology.wizard.move.MoveAxiomsKitPluginImpl
 
MoveAxiomsKitPluginLoader - Class in org.protege.editor.owl.ui.ontology.wizard.move
Author: Matthew Horridge
The University Of Manchester
Information Management Group
Date: 11-Sep-2008

MoveAxiomsKitPluginLoader(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.ontology.wizard.move.MoveAxiomsKitPluginLoader
 
MoveAxiomsModel - Interface in org.protege.editor.owl.ui.ontology.wizard.move
Author: Matthew Horridge
The University Of Manchester
Information Management Group
Date: 19-Sep-2008

MoveAxiomsToOntologyAction - Class in org.protege.editor.owl.ui.action
User: nickdrummond Date: May 20, 2008
MoveAxiomsToOntologyAction() - Constructor for class org.protege.editor.owl.ui.action.MoveAxiomsToOntologyAction
 
MoveAxiomsToOntologyAction<R> - Class in org.protege.editor.owl.ui.framelist
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 18-Dec-2007

MoveAxiomsToOntologyAction() - Constructor for class org.protege.editor.owl.ui.framelist.MoveAxiomsToOntologyAction
 
MoveAxiomsWizard - Class in org.protege.editor.owl.ui.ontology.wizard.move
User: nickdrummond Date: May 20, 2008
MoveAxiomsWizard(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.ontology.wizard.move.MoveAxiomsWizard
 
MoveAxiomsWizardKitConfigurationPanel - Class in org.protege.editor.owl.ui.ontology.wizard.move
Author: Matthew Horridge
The University Of Manchester
Information Management Group
Date: 19-Sep-2008

MoveAxiomsWizardKitConfigurationPanel(Object, Object, MoveAxiomsKitConfigurationPanel, OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.ontology.wizard.move.MoveAxiomsWizardKitConfigurationPanel
 
moveDown(OWLAxiom) - Method in class org.protege.editor.owl.ui.frame.ExplanationFrameSection
 
moveSelectedRowDown() - Method in class org.protege.editor.owl.ui.framelist.ExplanationFrameList
 
moveSelectedRowUp() - Method in class org.protege.editor.owl.ui.framelist.ExplanationFrameList
 
moveUp(OWLAxiom) - Method in class org.protege.editor.owl.ui.frame.ExplanationFrameSection
 

N

NAME_PARAM - Static variable in class org.protege.editor.owl.model.inference.ProtegeOWLReasonerFactoryPluginJPFImpl
 
NamespaceManager - Interface in org.protege.editor.owl.model.namespace
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 19-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

NamespaceManagerImpl - Class in org.protege.editor.owl.model.namespace
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 19-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

NamespaceManagerImpl() - Constructor for class org.protege.editor.owl.model.namespace.NamespaceManagerImpl
 
NamespaceManagerListener - Interface in org.protege.editor.owl.model.namespace
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 19-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

NativeBrowserLauncher - Class in org.protege.editor.core.ui.util
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Aug 12, 2008

NativeBrowserLauncher() - Constructor for class org.protege.editor.core.ui.util.NativeBrowserLauncher
 
NAVIGATES - Static variable in class org.protege.editor.core.ui.view.ViewComponentPluginJPFImpl
 
NestedIntersectionFlattener - Class in org.protege.editor.owl.model.util
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 14-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

A visitor that may be used to "flatten" OWLDescriptions.

NestedIntersectionFlattener() - Constructor for class org.protege.editor.owl.model.util.NestedIntersectionFlattener
 
NestedViewSplitPane - Class in org.protege.editor.core.ui.view
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Apr 6, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

NestedViewSplitPane(JSplitPane, String, int) - Constructor for class org.protege.editor.core.ui.view.NestedViewSplitPane
 
NewAction - Class in org.protege.editor.core.ui.action
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 17-Sep-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

NewAction() - Constructor for class org.protege.editor.core.ui.action.NewAction
 
NewEntitiesPreferencesPanel - Class in org.protege.editor.owl.ui.preferences
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Jul 24, 2008

see http://protegewiki.stanford.edu/index.php/Protege4NamingAndRendering

NewEntitiesPreferencesPanel() - Constructor for class org.protege.editor.owl.ui.preferences.NewEntitiesPreferencesPanel
 
newInstance() - Method in class org.protege.editor.core.editorkit.EditorKitFactoryPlugin
 
newInstance() - Method in class org.protege.editor.core.editorkit.plugin.EditorKitHookPluginImpl
 
newInstance() - Method in class org.protege.editor.core.OntologyRepositoryFactoryPluginImpl
 
newInstance() - Method in interface org.protege.editor.core.plugin.ProtegePlugin
Creates an instance of the plugin.
newInstance() - Method in class org.protege.editor.core.ui.action.ToolBarActionPluginJPFImpl
Creates an instance of the plugin.
newInstance() - Method in class org.protege.editor.core.ui.menu.MenuActionPluginJPFImpl
Creates an instance of the plugin.
newInstance() - Method in class org.protege.editor.core.ui.preferences.PreferencesPanelPluginJPFImpl
 
newInstance() - Method in class org.protege.editor.core.ui.view.ViewActionPluginJPFImpl
 
newInstance() - Method in class org.protege.editor.core.ui.view.ViewComponentPluginJPFImpl
Creates an instance of the plugin.
newInstance() - Method in class org.protege.editor.core.ui.workspace.CustomWorkspaceTabsManager.CustomTabPlugin
 
newInstance() - Method in class org.protege.editor.core.ui.workspace.WorkspaceTabPluginJPFImpl
 
newInstance() - Method in class org.protege.editor.owl.model.inference.ProtegeOWLReasonerFactoryPluginJPFImpl
Creates an instance of the plugin.
newInstance() - Method in class org.protege.editor.owl.model.io.IOListenerPluginImpl
 
newInstance() - Method in class org.protege.editor.owl.model.library.OntologyLibraryFactoryPluginJPFImpl
Creates an instance of the plugin.
newInstance() - Method in class org.protege.editor.owl.ui.editor.OWLDescriptionEditorPluginImpl
 
newInstance() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.MoveAxiomsKitPluginImpl
 
newInstance() - Method in class org.protege.editor.owl.ui.renderer.OWLEntityColorProviderPluginJPFImpl
 
newToken(int) - Static method in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.Token
Returns a new Token object, by default.
next() - Method in class org.protege.editor.core.ui.wizard.WizardController
 
next - Variable in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.Token
A reference to the next regular (non-special) token from the input stream.
NEXT_BUTTON_ACTION_COMMAND - Static variable in class org.protege.editor.core.ui.wizard.Wizard
The String-based action command for the 'Next' button.
NEXT_FINISH_BUTTON_ENABLED_PROPERTY - Static variable in class org.protege.editor.core.ui.wizard.WizardModel
Property identification String for the Next button's enabled state
NEXT_FINISH_BUTTON_ICON_PROPERTY - Static variable in class org.protege.editor.core.ui.wizard.WizardModel
Property identification String for the Next button's icon
NEXT_FINISH_BUTTON_TEXT_PROPERTY - Static variable in class org.protege.editor.core.ui.wizard.WizardModel
Property identification String for the Next button's text
nextButtonPressed() - Method in class uk.ac.man.cs.mig.util.wizard.Wizard
Called when the button that requests that the next page be displayed is pressed.
nextButtonPressed(Wizard) - Method in class uk.ac.man.cs.mig.util.wizard.WizardPage
Called when this page is being displayed and the next button was pressed.
nextPage() - Method in class uk.ac.man.cs.mig.util.wizard.Wizard
Programmatically advances the Wizard to display the next page.
nextPressed(WizardEvent) - Method in interface uk.ac.man.cs.mig.util.wizard.WizardEventListener
 
Node - Interface in uk.ac.man.cs.mig.util.graph.graph
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Dec 27, 2003

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

The interface for Nodes contained in a Graph.
NODE_FACTORY_PROPERTY - Static variable in interface uk.ac.man.cs.mig.util.graph.controller.Controller
 
NODE_LABEL_RENDERER_PROPERTY - Static variable in interface uk.ac.man.cs.mig.util.graph.controller.Controller
 
node_or_edge_stmt() - Method in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.DotParser
 
NODE_RENDERER_PROPERTY - Static variable in interface uk.ac.man.cs.mig.util.graph.controller.Controller
 
nodeChanged(N) - Method in interface org.protege.editor.owl.model.hierarchy.OWLObjectHierarchyProviderListener
Notifies the listener that the parents and or children of the specified node might have changed.
nodeClicked(NodeClickedEvent) - Method in interface uk.ac.man.cs.mig.util.graph.event.NodeClickedListener
Invoked when a Node has been clicked by the mouse in the GraphView
NodeClickedEvent - Class in uk.ac.man.cs.mig.util.graph.event
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Jun 1, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

NodeClickedEvent(Node, MouseEvent) - Constructor for class uk.ac.man.cs.mig.util.graph.event.NodeClickedEvent
Constructs a new NodeClickedEvent
NodeClickedListener - Interface in uk.ac.man.cs.mig.util.graph.event
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Jun 1, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

nodeClickedListeners - Variable in class uk.ac.man.cs.mig.util.graph.ui.GraphView
 
NodeFactory - Interface in uk.ac.man.cs.mig.util.graph.factory
User: matthewhorridge The Univeristy Of Manchester Medical Informatics Group Date: Dec 27, 2003
matthew.horridge@cs.man.ac.uk www.cs.man.ac.uk/~horridgm
Defines the interface required of any NodeFactory
NodeLabelRenderer - Interface in uk.ac.man.cs.mig.util.graph.renderer
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Jan 16, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

A NodeLabelRenderer gets the label for a Node.
NodeRenderer - Interface in uk.ac.man.cs.mig.util.graph.renderer
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Dec 29, 2003

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

Renders the graphical content of a node in the graph.
NoOpReasoner - Class in org.protege.editor.owl.model.inference
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 16-Apr-2007

NoOpReasoner(OWLOntologyManager) - Constructor for class org.protege.editor.owl.model.inference.NoOpReasoner
 
NoOpReasonerFactory - Class in org.protege.editor.owl.model.inference
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 16-Apr-2007

NoOpReasonerFactory() - Constructor for class org.protege.editor.owl.model.inference.NoOpReasonerFactory
 
notifyPropertyChange(String) - Method in class org.protege.editor.owl.model.selection.axioms.AbstractAxiomSelectionStrategy
 
notifySelectionChange() - Method in class org.protege.editor.owl.ui.action.AbstractDeleteEntityAction
 
NullMenuAction - Class in org.protege.editor.core.ui.menu
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Mar 29, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

NullMenuAction() - Constructor for class org.protege.editor.core.ui.menu.NullMenuAction
 
NUM - Static variable in interface uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.DotParserConstants
 

O

OBJECT_PROPERTY_COLOR_KEY - Static variable in class org.protege.editor.core.ProtegeProperties
 
OBJECT_PROPERTY_VIEW_CATEGORY - Static variable in class org.protege.editor.core.ProtegeProperties
 
objectAdded(GraphModelEvent) - Method in interface uk.ac.man.cs.mig.util.graph.event.GraphModelListener
Called when a node is added to the graph.
objectChanged(GraphModelEvent) - Method in interface uk.ac.man.cs.mig.util.graph.event.GraphModelListener
Called when a node is changed.
objectChanged(Object) - Method in class uk.ac.man.cs.mig.util.graph.model.impl.AbstractGraphModel
This method can be called to inform any listeners that an object has changed.
ObjectEditorHandler - Interface in org.protege.editor.owl.ui.framelist
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 09-Feb-2007

ObjectPropertyCount - Class in org.protege.editor.owl.ui.metrics
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 20-Feb-2007

ObjectPropertyCount() - Constructor for class org.protege.editor.owl.ui.metrics.ObjectPropertyCount
 
ObjectPropertyReferencingAxiomStrategy - Class in org.protege.editor.owl.model.selection.axioms
User: nickdrummond Date: May 20, 2008
ObjectPropertyReferencingAxiomStrategy() - Constructor for class org.protege.editor.owl.model.selection.axioms.ObjectPropertyReferencingAxiomStrategy
 
objectRemoved(GraphModelEvent) - Method in interface uk.ac.man.cs.mig.util.graph.event.GraphModelListener
Called when a node is removed from the graph.
objectsAdded(VisualisedObjectManagerEvent) - Method in interface uk.ac.man.cs.mig.util.graph.event.VisualisedObjectManagerListener
Called when an object is added to the list of objects being visualised.
objectsChanged(VisualisedObjectManagerEvent) - Method in interface uk.ac.man.cs.mig.util.graph.event.VisualisedObjectManagerListener
Called when the state of an object that is in the list of objects being visualised changes it's state (which might affect the visual appearence of the object.
ObjectSelectorPanel - Class in org.protege.editor.owl.ui
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 28-Oct-2007

ObjectSelectorPanel(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.ObjectSelectorPanel
 
ObjectSelectorViewComponent - Class in org.protege.editor.owl.ui.view
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 28-Oct-2007

ObjectSelectorViewComponent() - Constructor for class org.protege.editor.owl.ui.view.ObjectSelectorViewComponent
 
ObjectSomeRestrictionFillerExtractor - Class in org.protege.editor.owl.model.util
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 14-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

A utility class that can be used to extract the fillers of existential (OWLObjectSomeRestrictions) that restrict a specified property.

ObjectSomeRestrictionFillerExtractor(OWLDataFactory, OWLObjectProperty) - Constructor for class org.protege.editor.owl.model.util.ObjectSomeRestrictionFillerExtractor
Creates a filler extractor that will extract the fillers of existential restrictions that restrict the specified object property.
objectsRemoved(VisualisedObjectManagerEvent) - Method in interface uk.ac.man.cs.mig.util.graph.event.VisualisedObjectManagerListener
Called when an object that was previously in the list of objects being visualised was removed.
OKCancelDialog - Class in uk.ac.man.cs.mig.util.okcanceldialog
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Jan 7, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OKCancelDialog(Frame, String, String, String) - Constructor for class uk.ac.man.cs.mig.util.okcanceldialog.OKCancelDialog
 
ontologies - Variable in class org.protege.editor.owl.model.refactor.ontology.ConvertEntityURIsToIdentifierPattern
 
ONTOLOGIES_CHANGED - Static variable in class org.protege.editor.owl.model.selection.axioms.AbstractAxiomSelectionStrategy
 
ontologiesChanged() - Method in class org.protege.editor.owl.model.inference.NoOpReasoner
 
ontologiesChanged(List<? extends OWLOntologyChange>) - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
Called when some changes have been applied to various ontologies.
ontologiesCleared() - Method in class org.protege.editor.owl.model.inference.NoOpReasoner
 
ONTOLOGY_COLOR_KEY - Static variable in class org.protege.editor.core.ProtegeProperties
 
ONTOLOGY_LIBRARY_FOLDER - Static variable in class org.protege.editor.core.FileManager
 
ONTOLOGY_URI_COL - Static variable in class org.protege.editor.core.ui.RepositoryTableModel
 
ONTOLOGY_VIEW_CATEGORY - Static variable in class org.protege.editor.core.ProtegeProperties
 
OntologyFileFilter - Class in org.protege.editor.owl.model
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 23-Aug-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

A file filter that accepts probable ontology files.

OntologyFileFilter() - Constructor for class org.protege.editor.owl.model.OntologyFileFilter
 
OntologyFormatPanel - Class in org.protege.editor.owl.ui
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 13-Sep-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OntologyFormatPanel() - Constructor for class org.protege.editor.owl.ui.OntologyFormatPanel
 
OntologyImportsAndNavigationPanel - Class in org.protege.editor.owl.ui
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 28-Oct-2007

OntologyImportsAndNavigationPanel(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.OntologyImportsAndNavigationPanel
 
OntologyImportsWalker - Class in org.protege.editor.owl.model.refactor.ontology
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Aug 20, 2008

OntologyImportsWalker(OWLModelManager, Set<OWLOntology>) - Constructor for class org.protege.editor.owl.model.refactor.ontology.OntologyImportsWalker
 
OntologyImportWizard - Class in org.protege.editor.owl.ui.ontology.imports.wizard
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 12-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OntologyImportWizard(Frame, OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.ontology.imports.wizard.OntologyImportWizard
 
OntologyLibrary - Interface in org.protege.editor.owl.model.library
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 20-Jul-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

A library contains a set of ontologies.

OntologyLibraryFactory - Interface in org.protege.editor.owl.model.library
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 20-Jul-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OntologyLibraryFactoryPlugin - Interface in org.protege.editor.owl.model.library
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 20-Jul-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OntologyLibraryFactoryPluginJPFImpl - Class in org.protege.editor.owl.model.library
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 20-Jul-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OntologyLibraryFactoryPluginJPFImpl(IExtension) - Constructor for class org.protege.editor.owl.model.library.OntologyLibraryFactoryPluginJPFImpl
 
OntologyLibraryLoader - Class in org.protege.editor.owl.model.library
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 23-Aug-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OntologyLibraryLoader(OntologyLibraryManager) - Constructor for class org.protege.editor.owl.model.library.OntologyLibraryLoader
 
OntologyLibraryManager - Class in org.protege.editor.owl.model.library
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 23-Aug-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OntologyLibraryManager() - Constructor for class org.protege.editor.owl.model.library.OntologyLibraryManager
 
OntologyLibraryMemento - Class in org.protege.editor.owl.model.library
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 20-Jul-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OntologyLibraryMemento(String) - Constructor for class org.protege.editor.owl.model.library.OntologyLibraryMemento
 
OntologyLibraryPanel - Class in org.protege.editor.owl.ui.library
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 24-Aug-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

Panel for showing the available ontology libraries and allowing them to be edited.

OntologyLibraryPanel(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.library.OntologyLibraryPanel
 
OntologyLibraryPanel.OntologyLibraryCellRenderer - Class in org.protege.editor.owl.ui.library
 
OntologyLibraryPanel.OntologyLibraryCellRenderer() - Constructor for class org.protege.editor.owl.ui.library.OntologyLibraryPanel.OntologyLibraryCellRenderer
 
OntologyLibraryPluginLoader - Class in org.protege.editor.owl.model.library
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 20-Jul-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OntologyLibraryPluginLoader() - Constructor for class org.protege.editor.owl.model.library.OntologyLibraryPluginLoader
 
OntologyLoadErrorHandler - Interface in org.protege.editor.owl.ui.error
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Aug 28, 2008

A hook to allow for feedback when an error occurs during loading

OntologyLoadErrorHandlerUI - Class in org.protege.editor.owl.ui.error
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Aug 28, 2008

OntologyLoadErrorHandlerUI(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.error.OntologyLoadErrorHandlerUI
 
OntologyLoadErrorHandlerUI.ParseErrorsPanel - Class in org.protege.editor.owl.ui.error
 
OntologyLoadErrorHandlerUI.ParseErrorsPanel(UnparsableOntologyException, URI) - Constructor for class org.protege.editor.owl.ui.error.OntologyLoadErrorHandlerUI.ParseErrorsPanel
 
OntologyMerger - Class in org.protege.editor.owl.model.refactor.ontology
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 22-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OntologyMerger(OWLOntologyManager, Set<OWLOntology>, OWLOntology) - Constructor for class org.protege.editor.owl.model.refactor.ontology.OntologyMerger
 
OntologyMigrator - Class in org.protege.editor.owl.model.refactor.ontology
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 01-Sep-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OntologyMigrator(OWLOntologyManager, OWLOntology, OWLOntology) - Constructor for class org.protege.editor.owl.model.refactor.ontology.OntologyMigrator
 
OntologyPreferences - Class in org.protege.editor.owl.ui.ontology
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 28-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OntologyPreferencesPanel - Class in org.protege.editor.owl.ui.ontology
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 28-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OntologyPreferencesPanel() - Constructor for class org.protege.editor.owl.ui.ontology.OntologyPreferencesPanel
 
OntologyRepository - Interface in org.protege.editor.core
Author: Matthew Horridge
The University Of Manchester
Information Management Group
Date: 18-Oct-2008

OntologyRepositoryEntry - Interface in org.protege.editor.core
Author: Matthew Horridge
The University Of Manchester
Information Management Group
Date: 18-Oct-2008

OntologyRepositoryFactory - Class in org.protege.editor.core
Author: Matthew Horridge
The University Of Manchester
Information Management Group
Date: 18-Oct-2008

OntologyRepositoryFactory() - Constructor for class org.protege.editor.core.OntologyRepositoryFactory
 
OntologyRepositoryFactoryPlugin - Interface in org.protege.editor.core
Author: Matthew Horridge
The University Of Manchester
Information Management Group
Date: 18-Oct-2008

OntologyRepositoryFactoryPluginImpl - Class in org.protege.editor.core
Author: Matthew Horridge
The University Of Manchester
Information Management Group
Date: 18-Oct-2008

OntologyRepositoryFactoryPluginImpl(IExtension) - Constructor for class org.protege.editor.core.OntologyRepositoryFactoryPluginImpl
 
OntologyRepositoryFactoryPluginLoader - Class in org.protege.editor.core
Author: Matthew Horridge
The University Of Manchester
Information Management Group
Date: 18-Oct-2008

OntologyRepositoryFactoryPluginLoader() - Constructor for class org.protege.editor.core.OntologyRepositoryFactoryPluginLoader
 
OntologyRepositoryManager - Class in org.protege.editor.core
Author: Matthew Horridge
The University Of Manchester
Information Management Group
Date: 18-Oct-2008

ontologySelected(OWLOntology) - Method in class org.protege.editor.owl.ui.framelist.MoveAxiomsToOntologyAction
 
OntologySelectionStrategy - Interface in org.protege.editor.owl.model.selection.ontologies
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Jun 6, 2008

ontologySourcesChanged(OntologySourcesListener.OntologySourcesChangeEvent) - Method in interface org.protege.editor.owl.model.io.OntologySourcesListener
 
ontologySourcesChanged(OntologySourcesListener.OntologySourcesChangeEvent) - Method in class org.protege.editor.owl.ui.ontology.OntologySourcesChangedHandlerUI
 
OntologySourcesChangedHandlerUI - Class in org.protege.editor.owl.ui.ontology
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Sep 24, 2008

OntologySourcesChangedHandlerUI(OWLWorkspace) - Constructor for class org.protege.editor.owl.ui.ontology.OntologySourcesChangedHandlerUI
 
OntologySourcesListener - Interface in org.protege.editor.owl.model.io
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Sep 23, 2008

OntologySourcesListener.OntologySourcesChangeEvent - Class in org.protege.editor.owl.model.io
 
OntologySourcesListener.OntologySourcesChangeEvent(Set<OWLOntology>) - Constructor for class org.protege.editor.owl.model.io.OntologySourcesListener.OntologySourcesChangeEvent
 
OntologySourcesManager - Class in org.protege.editor.owl.model.io
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Sep 23, 2008

Checks every t seconds to see if the ontology source files have changed since loading

OntologySourcesManager(OWLModelManager) - Constructor for class org.protege.editor.owl.model.io.OntologySourcesManager
 
OntologyTargetResolver - Interface in org.protege.editor.owl.model.refactor.ontology
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Aug 21, 2008

OntologyURIExtractor - Class in org.protege.editor.owl.model.repository
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Apr 20, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

A utility class that can be used to extract an ontology URI from an RDF/XML or OWL/XML file: - first look for a valid Ontology element - otherwise use the xml:base - if there is no explicit xml:base, then this will be the document URI.

OntologyURIExtractor(URI) - Constructor for class org.protege.editor.owl.model.repository.OntologyURIExtractor
 
OntologyURIPanel - Class in org.protege.editor.owl.ui.ontology.wizard.create
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 12-May-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OntologyURIPanel(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.ontology.wizard.create.OntologyURIPanel
 
ontologyVisibilityChanged(OntologyVisibilityManager) - Method in interface org.protege.editor.owl.model.OntologyVisibilityManagerListener
 
OntologyVisibilityManager - Interface in org.protege.editor.owl.model
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Apr 19, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OntologyVisibilityManagerImpl - Class in org.protege.editor.owl.model
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Apr 20, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OntologyVisibilityManagerImpl() - Constructor for class org.protege.editor.owl.model.OntologyVisibilityManagerImpl
 
OntologyVisibilityManagerListener - Interface in org.protege.editor.owl.model
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Apr 20, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OPEN_DIALOG_MODE - Static variable in class org.protege.editor.core.ui.util.FilePathPanel
 
OpenAction - Class in org.protege.editor.core.ui.action
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 17-Sep-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OpenAction() - Constructor for class org.protege.editor.core.ui.action.OpenAction
 
openAndSetupEditorKit(EditorKitFactoryPlugin) - Method in class org.protege.editor.core.ProtegeManager
Opens an EditorKit using the EditorKitFactory specified by the given Id.
openAndSetupRecentEditorKit(EditorKitDescriptor) - Method in class org.protege.editor.core.ProtegeManager
 
openFile(Window, String, Set<String>) - Static method in class org.protege.editor.core.ui.util.UIUtil
 
OpenFromRepositoryPanel - Class in org.protege.editor.core.ui
Author: Matthew Horridge
The University Of Manchester
Information Management Group
Date: 18-Oct-2008

OpenFromRepositoryPanel(OntologyRepository) - Constructor for class org.protege.editor.core.ui.OpenFromRepositoryPanel
 
OpenFromURIAction - Class in org.protege.editor.owl.ui.action
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 20-Dec-2006

OpenFromURIAction() - Constructor for class org.protege.editor.owl.ui.action.OpenFromURIAction
 
OpenFromURIPanel - Class in org.protege.editor.core.ui
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 12-May-2007

OpenFromURIPanel() - Constructor for class org.protege.editor.core.ui.OpenFromURIPanel
 
openInCurrentWorkspace() - Method in class org.protege.editor.core.ui.action.NewAction
 
openInCurrentWorkspace() - Method in class org.protege.editor.core.ui.action.OpenAction
 
openInCurrentWorkspace() - Method in interface org.protege.editor.core.ui.util.OpenRequestHandler
 
openInCurrentWorkspace() - Method in class org.protege.editor.owl.ui.action.OpenFromURIAction
 
openInNewWorkspace() - Method in class org.protege.editor.core.ui.action.NewAction
 
openInNewWorkspace() - Method in class org.protege.editor.core.ui.action.OpenAction
 
openInNewWorkspace() - Method in interface org.protege.editor.core.ui.util.OpenRequestHandler
 
openInNewWorkspace() - Method in class org.protege.editor.owl.ui.action.OpenFromURIAction
 
OpenRecentAction - Class in org.protege.editor.core.ui.action
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 17-Sep-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OpenRecentAction() - Constructor for class org.protege.editor.core.ui.action.OpenRecentAction
 
openRequest(OpenRequestHandler) - Static method in class org.protege.editor.core.ui.util.UIUtil
 
OpenRequestHandler - Interface in org.protege.editor.core.ui.util
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Sep 22, 2008

openURL(String) - Static method in class org.protege.editor.core.ui.util.NativeBrowserLauncher
 
OpenURLMenuAction - Class in org.protege.editor.core.ui.menu
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Aug 12, 2008

OpenURLMenuAction(URL) - Constructor for class org.protege.editor.core.ui.menu.OpenURLMenuAction
 
OPTION_APPROVE - Static variable in class uk.ac.man.cs.mig.util.okcanceldialog.OKCancelDialog
 
OPTION_APPROVE - Static variable in class uk.ac.man.cs.mig.util.wizard.Wizard
 
OPTION_CANCEL - Static variable in class uk.ac.man.cs.mig.util.okcanceldialog.OKCancelDialog
 
OPTION_CANCEL - Static variable in class uk.ac.man.cs.mig.util.wizard.Wizard
 
OPTIONS_ICON - Static variable in class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizIcons
 
optionsChanged() - Method in interface uk.ac.man.cs.mig.coode.owlviz.ui.options.OptionsChangedListener
 
OptionsChangedListener - Interface in uk.ac.man.cs.mig.coode.owlviz.ui.options
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Sep 10, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OptionsDialog - Class in uk.ac.man.cs.mig.coode.owlviz.ui.options
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Mar 1, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OptionsDialog(Frame) - Constructor for class uk.ac.man.cs.mig.coode.owlviz.ui.options.OptionsDialog
 
OptionsPage - Class in uk.ac.man.cs.mig.coode.owlviz.ui.options
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Mar 1, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OptionsPage() - Constructor for class uk.ac.man.cs.mig.coode.owlviz.ui.options.OptionsPage
 
org.coode.dlquery - package org.coode.dlquery
 
org.protege.common - package org.protege.common
 
org.protege.common.log - package org.protege.common.log
 
org.protege.editor.core - package org.protege.editor.core
 
org.protege.editor.core.editorkit - package org.protege.editor.core.editorkit
 
org.protege.editor.core.editorkit.plugin - package org.protege.editor.core.editorkit.plugin
 
org.protege.editor.core.platform - package org.protege.editor.core.platform
 
org.protege.editor.core.platform.apple - package org.protege.editor.core.platform.apple
 
org.protege.editor.core.plugin - package org.protege.editor.core.plugin
 
org.protege.editor.core.prefs - package org.protege.editor.core.prefs
 
org.protege.editor.core.ui - package org.protege.editor.core.ui
 
org.protege.editor.core.ui.about - package org.protege.editor.core.ui.about
 
org.protege.editor.core.ui.action - package org.protege.editor.core.ui.action
 
org.protege.editor.core.ui.error - package org.protege.editor.core.ui.error
 
org.protege.editor.core.ui.list - package org.protege.editor.core.ui.list
 
org.protege.editor.core.ui.menu - package org.protege.editor.core.ui.menu
 
org.protege.editor.core.ui.preferences - package org.protege.editor.core.ui.preferences
 
org.protege.editor.core.ui.preferences.node - package org.protege.editor.core.ui.preferences.node
 
org.protege.editor.core.ui.progress - package org.protege.editor.core.ui.progress
 
org.protege.editor.core.ui.split - package org.protege.editor.core.ui.split
 
org.protege.editor.core.ui.tabbedpane - package org.protege.editor.core.ui.tabbedpane
 
org.protege.editor.core.ui.toolbar - package org.protege.editor.core.ui.toolbar
 
org.protege.editor.core.ui.tree - package org.protege.editor.core.ui.tree
 
org.protege.editor.core.ui.util - package org.protege.editor.core.ui.util
 
org.protege.editor.core.ui.view - package org.protege.editor.core.ui.view
 
org.protege.editor.core.ui.view.button - package org.protege.editor.core.ui.view.button
 
org.protege.editor.core.ui.wizard - package org.protege.editor.core.ui.wizard
 
org.protege.editor.core.ui.workspace - package org.protege.editor.core.ui.workspace
 
org.protege.editor.core.ui.workspace.views - package org.protege.editor.core.ui.workspace.views
 
org.protege.editor.core.update - package org.protege.editor.core.update
 
org.protege.editor.core.util - package org.protege.editor.core.util
 
org.protege.editor.owl - package org.protege.editor.owl
 
org.protege.editor.owl.model - package org.protege.editor.owl.model
 
org.protege.editor.owl.model.cache - package org.protege.editor.owl.model.cache
 
org.protege.editor.owl.model.description - package org.protege.editor.owl.model.description
 
org.protege.editor.owl.model.description.anonymouscls - package org.protege.editor.owl.model.description.anonymouscls
 
org.protege.editor.owl.model.entity - package org.protege.editor.owl.model.entity
 
org.protege.editor.owl.model.event - package org.protege.editor.owl.model.event
 
org.protege.editor.owl.model.find - package org.protege.editor.owl.model.find
 
org.protege.editor.owl.model.hierarchy - package org.protege.editor.owl.model.hierarchy
 
org.protege.editor.owl.model.hierarchy.cls - package org.protege.editor.owl.model.hierarchy.cls
 
org.protege.editor.owl.model.hierarchy.property - package org.protege.editor.owl.model.hierarchy.property
 
org.protege.editor.owl.model.hierarchy.roots - package org.protege.editor.owl.model.hierarchy.roots
 
org.protege.editor.owl.model.hierarchy.tabbed - package org.protege.editor.owl.model.hierarchy.tabbed
 
org.protege.editor.owl.model.history - package org.protege.editor.owl.model.history
 
org.protege.editor.owl.model.inference - package org.protege.editor.owl.model.inference
 
org.protege.editor.owl.model.io - package org.protege.editor.owl.model.io
 
org.protege.editor.owl.model.library - package org.protege.editor.owl.model.library
 
org.protege.editor.owl.model.library.folder - package org.protege.editor.owl.model.library.folder
 
org.protege.editor.owl.model.namespace - package org.protege.editor.owl.model.namespace
 
org.protege.editor.owl.model.parser - package org.protege.editor.owl.model.parser
 
org.protege.editor.owl.model.refactor - package org.protege.editor.owl.model.refactor
 
org.protege.editor.owl.model.refactor.ontology - package org.protege.editor.owl.model.refactor.ontology
 
org.protege.editor.owl.model.repository - package org.protege.editor.owl.model.repository
 
org.protege.editor.owl.model.selection - package org.protege.editor.owl.model.selection
 
org.protege.editor.owl.model.selection.axioms - package org.protege.editor.owl.model.selection.axioms
 
org.protege.editor.owl.model.selection.ontologies - package org.protege.editor.owl.model.selection.ontologies
 
org.protege.editor.owl.model.util - package org.protege.editor.owl.model.util
 
org.protege.editor.owl.ui - package org.protege.editor.owl.ui
 
org.protege.editor.owl.ui.action - package org.protege.editor.owl.ui.action
 
org.protege.editor.owl.ui.axiom - package org.protege.editor.owl.ui.axiom
 
org.protege.editor.owl.ui.clsdescriptioneditor - package org.protege.editor.owl.ui.clsdescriptioneditor
 
org.protege.editor.owl.ui.clshierarchy - package org.protege.editor.owl.ui.clshierarchy
 
org.protege.editor.owl.ui.editor - package org.protege.editor.owl.ui.editor
 
org.protege.editor.owl.ui.error - package org.protege.editor.owl.ui.error
 
org.protege.editor.owl.ui.explanation - package org.protege.editor.owl.ui.explanation
 
org.protege.editor.owl.ui.find - package org.protege.editor.owl.ui.find
 
org.protege.editor.owl.ui.frame - package org.protege.editor.owl.ui.frame
 
org.protege.editor.owl.ui.frame.cls - package org.protege.editor.owl.ui.frame.cls
 
org.protege.editor.owl.ui.frame.editor - package org.protege.editor.owl.ui.frame.editor
 
org.protege.editor.owl.ui.frame.property - package org.protege.editor.owl.ui.frame.property
 
org.protege.editor.owl.ui.framelist - package org.protege.editor.owl.ui.framelist
 
org.protege.editor.owl.ui.hierarchy.creation - package org.protege.editor.owl.ui.hierarchy.creation
 
org.protege.editor.owl.ui.inference - package org.protege.editor.owl.ui.inference
 
org.protege.editor.owl.ui.library - package org.protege.editor.owl.ui.library
 
org.protege.editor.owl.ui.list - package org.protege.editor.owl.ui.list
 
org.protege.editor.owl.ui.metrics - package org.protege.editor.owl.ui.metrics
 
org.protege.editor.owl.ui.navigation - package org.protege.editor.owl.ui.navigation
 
org.protege.editor.owl.ui.ontology - package org.protege.editor.owl.ui.ontology
 
org.protege.editor.owl.ui.ontology.imports.missing - package org.protege.editor.owl.ui.ontology.imports.missing
 
org.protege.editor.owl.ui.ontology.imports.wizard - package org.protege.editor.owl.ui.ontology.imports.wizard
 
org.protege.editor.owl.ui.ontology.location - package org.protege.editor.owl.ui.ontology.location
 
org.protege.editor.owl.ui.ontology.migration - package org.protege.editor.owl.ui.ontology.migration
 
org.protege.editor.owl.ui.ontology.wizard - package org.protege.editor.owl.ui.ontology.wizard
 
org.protege.editor.owl.ui.ontology.wizard.create - package org.protege.editor.owl.ui.ontology.wizard.create
 
org.protege.editor.owl.ui.ontology.wizard.merge - package org.protege.editor.owl.ui.ontology.wizard.merge
 
org.protege.editor.owl.ui.ontology.wizard.move - package org.protege.editor.owl.ui.ontology.wizard.move
 
org.protege.editor.owl.ui.ontology.wizard.move.byannotation - package org.protege.editor.owl.ui.ontology.wizard.move.byannotation
 
org.protege.editor.owl.ui.ontology.wizard.move.byprofile - package org.protege.editor.owl.ui.ontology.wizard.move.byprofile
 
org.protege.editor.owl.ui.ontology.wizard.move.byreference - package org.protege.editor.owl.ui.ontology.wizard.move.byreference
 
org.protege.editor.owl.ui.ontology.wizard.move.bytype - package org.protege.editor.owl.ui.ontology.wizard.move.bytype
 
org.protege.editor.owl.ui.ontology.wizard.move.common - package org.protege.editor.owl.ui.ontology.wizard.move.common
 
org.protege.editor.owl.ui.preferences - package org.protege.editor.owl.ui.preferences
 
org.protege.editor.owl.ui.prefix - package org.protege.editor.owl.ui.prefix
 
org.protege.editor.owl.ui.rename - package org.protege.editor.owl.ui.rename
 
org.protege.editor.owl.ui.renderer - package org.protege.editor.owl.ui.renderer
 
org.protege.editor.owl.ui.selector - package org.protege.editor.owl.ui.selector
 
org.protege.editor.owl.ui.table - package org.protege.editor.owl.ui.table
 
org.protege.editor.owl.ui.transfer - package org.protege.editor.owl.ui.transfer
 
org.protege.editor.owl.ui.tree - package org.protege.editor.owl.ui.tree
 
org.protege.editor.owl.ui.usage - package org.protege.editor.owl.ui.usage
 
org.protege.editor.owl.ui.util - package org.protege.editor.owl.ui.util
 
org.protege.editor.owl.ui.view - package org.protege.editor.owl.ui.view
 
OSGI_READS_DIRECTORIES - Static variable in class org.protege.editor.core.BundleManager
 
OSUtils - Class in org.protege.editor.core.ui.util
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Sep 19, 2008

OSUtils() - Constructor for class org.protege.editor.core.ui.util.OSUtils
 
OWL_EXTENSIONS - Static variable in class org.protege.editor.owl.OWLEditorKitFactory
 
OWL_OBJECT_COMPARATOR_KEY - Static variable in interface org.protege.editor.owl.model.OWLModelManager
 
OWL_OBJECT_DATA_FLAVOR - Static variable in class org.protege.editor.owl.ui.transfer.OWLObjectDataFlavor
 
OWLAnnonymousIndividualAnnotationValueEditor - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 01-Aug-2007

OWLAnnonymousIndividualAnnotationValueEditor(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.frame.OWLAnnonymousIndividualAnnotationValueEditor
 
OWLAnnotationCellRenderer - Class in org.protege.editor.owl.ui.renderer
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 27-Feb-2007

OWLAnnotationCellRenderer(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.renderer.OWLAnnotationCellRenderer
 
OWLAnnotationEditor - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 10-Feb-2007

OWLAnnotationEditor(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.frame.OWLAnnotationEditor
 
OWLAnnotationFrameSection - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 26-Jan-2007

OWLAnnotationFrameSection(OWLEditorKit, OWLFrame<? extends OWLEntity>) - Constructor for class org.protege.editor.owl.ui.frame.OWLAnnotationFrameSection
 
OWLAnnotationPropertySelectorPanel - Class in org.protege.editor.owl.ui.selector
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Apr 27, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLAnnotationPropertySelectorPanel(OWLEditorKit, String, boolean) - Constructor for class org.protege.editor.owl.ui.selector.OWLAnnotationPropertySelectorPanel
 
OWLAnnotationRenderer - Class in org.protege.editor.owl.ui.renderer
Deprecated. use OWLAnnotationCellRenderer
OWLAnnotationRenderer(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.renderer.OWLAnnotationRenderer
Deprecated.  
OWLAnnotationsFrame - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 26-Jan-2007

OWLAnnotationsFrame(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.frame.OWLAnnotationsFrame
 
OWLAnnotationsFrameSectionRow - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 26-Jan-2007

OWLAnnotationsFrameSectionRow(OWLEditorKit, OWLFrameSection, OWLOntology, OWLEntity, OWLEntityAnnotationAxiom) - Constructor for class org.protege.editor.owl.ui.frame.OWLAnnotationsFrameSectionRow
 
OWLAnnotationURIRenderer - Class in org.protege.editor.owl.ui.renderer
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Jul 4, 2008

Finds renderings for the annotation URIs when an annotation value renderer is being used.

OWLAnnotationURIRenderer(OWLModelManager) - Constructor for class org.protege.editor.owl.ui.renderer.OWLAnnotationURIRenderer
 
OWLAnnotationValueEditor<O> - Interface in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 01-Aug-2007

OWLAxiomAnnotationsFrame - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 06-Dec-2007

OWLAxiomAnnotationsFrame(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.frame.OWLAxiomAnnotationsFrame
 
OWLAxiomAnnotationsFrameSection - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 06-Dec-2007

OWLAxiomAnnotationsFrameSection(OWLEditorKit, OWLFrame<? extends OWLAxiom>) - Constructor for class org.protege.editor.owl.ui.frame.OWLAxiomAnnotationsFrameSection
 
OWLAxiomAnnotationsFrameSectionRow - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 06-Dec-2007

OWLAxiomAnnotationsFrameSectionRow(OWLEditorKit, OWLFrameSection, OWLOntology, OWLAxiom, OWLAxiomAnnotationAxiom) - Constructor for class org.protege.editor.owl.ui.frame.OWLAxiomAnnotationsFrameSectionRow
 
OWLAxiomAnnotationsRoot - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 06-Dec-2007

OWLAxiomAnnotationsRoot(OWLAxiom, Set<OWLAxiomAnnotationAxiom>) - Constructor for class org.protege.editor.owl.ui.frame.OWLAxiomAnnotationsRoot
 
OWLAxiomAnnotationsView - Class in org.protege.editor.owl.ui.view
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Sep 2, 2008

OWLAxiomAnnotationsView() - Constructor for class org.protege.editor.owl.ui.view.OWLAxiomAnnotationsView
 
OWLAxiomInstance - Class in org.protege.editor.owl.model.util
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Jun 5, 2009

This class is a pair that describes an instance of an axiom with resppect to its containing ontology

OWLAxiomInstance(OWLAxiom, OWLOntology) - Constructor for class org.protege.editor.owl.model.util.OWLAxiomInstance
 
OWLAxiomList - Class in org.protege.editor.owl.ui.list
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 14-Sep-2007

OWLAxiomList(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.list.OWLAxiomList
 
OWLAxiomTypeFramePanel - Class in org.protege.editor.owl.ui
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 19-Dec-2007

OWLAxiomTypeFramePanel(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.OWLAxiomTypeFramePanel
 
OWLCellRenderer - Class in org.protege.editor.owl.ui.renderer
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 23-May-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLCellRenderer(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.renderer.OWLCellRenderer
 
OWLCellRenderer(OWLEditorKit, boolean, boolean) - Constructor for class org.protege.editor.owl.ui.renderer.OWLCellRenderer
 
OWLCellRenderer(OWLEditorKit, boolean, boolean, int) - Constructor for class org.protege.editor.owl.ui.renderer.OWLCellRenderer
Deprecated. Use OWLCellRenderer(OWLEditorKit, renderExpression, renderIcon) Creates a cell renderer
OWLCellRendererSimple - Class in org.protege.editor.owl.ui.renderer
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 29-Nov-2007

A simple renderer for trees and lists (where syntax highlighting etc.
OWLCellRendererSimple(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.renderer.OWLCellRendererSimple
 
OWLClassAnnotationsViewComponent - Class in org.protege.editor.owl.ui.view
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 04-Feb-2007

OWLClassAnnotationsViewComponent() - Constructor for class org.protege.editor.owl.ui.view.OWLClassAnnotationsViewComponent
 
OWLClassAssertionAxiomIndividualSection - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 27-Jan-2007

OWLClassAssertionAxiomIndividualSection(OWLEditorKit, OWLFrame<? extends OWLClass>) - Constructor for class org.protege.editor.owl.ui.frame.OWLClassAssertionAxiomIndividualSection
 
OWLClassAssertionAxiomIndividualSectionRow - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 27-Jan-2007

OWLClassAssertionAxiomIndividualSectionRow(OWLEditorKit, OWLFrameSection<OWLDescription, OWLClassAssertionAxiom, OWLIndividual>, OWLOntology, OWLDescription, OWLClassAssertionAxiom) - Constructor for class org.protege.editor.owl.ui.frame.OWLClassAssertionAxiomIndividualSectionRow
 
OWLClassAssertionAxiomTypeFrameSection - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 29-Jan-2007

OWLClassAssertionAxiomTypeFrameSection(OWLEditorKit, OWLFrame<? extends OWLIndividual>) - Constructor for class org.protege.editor.owl.ui.frame.OWLClassAssertionAxiomTypeFrameSection
 
OWLClassAssertionAxiomTypeFrameSectionRow - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 29-Jan-2007

OWLClassAssertionAxiomTypeFrameSectionRow(OWLEditorKit, OWLFrameSection, OWLOntology, OWLIndividual, OWLClassAssertionAxiom) - Constructor for class org.protege.editor.owl.ui.frame.OWLClassAssertionAxiomTypeFrameSectionRow
 
OWLClassAxiomChecker - Class in org.protege.editor.owl.ui.clsdescriptioneditor
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 11-Oct-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLClassAxiomChecker(OWLModelManager) - Constructor for class org.protege.editor.owl.ui.clsdescriptioneditor.OWLClassAxiomChecker
 
OWLClassAxiomEditor - Class in org.protege.editor.owl.ui.clsdescriptioneditor
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 06-Oct-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLClassAxiomEditor(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.clsdescriptioneditor.OWLClassAxiomEditor
 
OWLClassDescriptionEditor - Class in org.protege.editor.owl.ui.editor
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 15-Feb-2007

OWLClassDescriptionEditor(OWLEditorKit, OWLDescription) - Constructor for class org.protege.editor.owl.ui.editor.OWLClassDescriptionEditor
 
OWLClassDescriptionEditor - Class in org.protege.editor.owl.ui.frame
Deprecated. use org.protege.editor.owl.ui.editor.OWLClassDescriptionEditor
OWLClassDescriptionEditor(OWLEditorKit, OWLDescription) - Constructor for class org.protege.editor.owl.ui.frame.OWLClassDescriptionEditor
Deprecated.  
OWLClassDescriptionFrame - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 19-Jan-2007

OWLClassDescriptionFrame(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.frame.OWLClassDescriptionFrame
 
OWLClassDescriptionSetEditor - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 26-Feb-2007

OWLClassDescriptionSetEditor(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.frame.OWLClassDescriptionSetEditor
 
OWLClassDescriptionSetEditor(OWLEditorKit, List<OWLDescription>) - Constructor for class org.protege.editor.owl.ui.frame.OWLClassDescriptionSetEditor
 
OWLClassDescriptionViewComponent - Class in org.protege.editor.owl.ui.view
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 04-Feb-2007

OWLClassDescriptionViewComponent() - Constructor for class org.protege.editor.owl.ui.view.OWLClassDescriptionViewComponent
 
OWLClassGraphAssertedModel - Class in uk.ac.man.cs.mig.coode.owlviz.model
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 08-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLClassGraphAssertedModel(OWLModelManager) - Constructor for class uk.ac.man.cs.mig.coode.owlviz.model.OWLClassGraphAssertedModel
 
OWLClassGraphInferredModel - Class in uk.ac.man.cs.mig.coode.owlviz.model
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 27-Aug-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLClassGraphInferredModel(OWLModelManager) - Constructor for class uk.ac.man.cs.mig.coode.owlviz.model.OWLClassGraphInferredModel
 
OWLClassHierarchyCreator - Class in org.protege.editor.owl.model.hierarchy.tabbed
Deprecated. use OWLClassHierarchyCreator2
OWLClassHierarchyCreator(OWLDataFactory, OWLClass, boolean, OWLOntology, List<Edge>) - Constructor for class org.protege.editor.owl.model.hierarchy.tabbed.OWLClassHierarchyCreator
Deprecated.  
OWLClassHierarchyCreator2 - Class in org.protege.editor.owl.model.hierarchy.tabbed
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Aug 12, 2008

OWLClassHierarchyCreator2(OWLDataFactory, OWLEntityFactory, OWLClass, boolean, OWLOntology, List<Edge>) - Constructor for class org.protege.editor.owl.model.hierarchy.tabbed.OWLClassHierarchyCreator2
 
OWLClassSelectorPanel - Class in org.protege.editor.owl.ui.selector
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: May 2, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLClassSelectorPanel(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.selector.OWLClassSelectorPanel
 
OWLClassSelectorPanel(OWLEditorKit, boolean) - Constructor for class org.protege.editor.owl.ui.selector.OWLClassSelectorPanel
 
OWLClassSelectorPanel(OWLEditorKit, boolean, OWLObjectHierarchyProvider<OWLClass>) - Constructor for class org.protege.editor.owl.ui.selector.OWLClassSelectorPanel
 
OWLClassSelectorWrapper - Class in org.protege.editor.owl.ui.editor
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Feb 26, 2009

OWLClassSelectorWrapper() - Constructor for class org.protege.editor.owl.ui.editor.OWLClassSelectorWrapper
 
OWLClassUsageViewComponent - Class in org.protege.editor.owl.ui.view
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 22-Feb-2007

OWLClassUsageViewComponent() - Constructor for class org.protege.editor.owl.ui.view.OWLClassUsageViewComponent
 
OWLClsEdgeRenderer - Class in uk.ac.man.cs.mig.coode.owlviz.ui.renderer
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Jun 1, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLClsEdgeRenderer(Controller) - Constructor for class uk.ac.man.cs.mig.coode.owlviz.ui.renderer.OWLClsEdgeRenderer
 
OWLClsNodeLabelRenderer - Class in uk.ac.man.cs.mig.coode.owlviz.ui.renderer
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Feb 5, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLClsNodeLabelRenderer(OWLModelManager) - Constructor for class uk.ac.man.cs.mig.coode.owlviz.ui.renderer.OWLClsNodeLabelRenderer
 
OWLClsNodeRenderer - Class in uk.ac.man.cs.mig.coode.owlviz.ui.renderer
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Feb 5, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLClsNodeRenderer(Controller, VisualisedObjectManager, NodeLabelRenderer, OWLModelManager) - Constructor for class uk.ac.man.cs.mig.coode.owlviz.ui.renderer.OWLClsNodeRenderer
 
OWLComponentFactory - Interface in org.protege.editor.owl.ui.util
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Feb 26, 2009

OWLComponentFactoryImpl - Class in org.protege.editor.owl.ui.util
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Feb 26, 2009

OWLComponentFactoryImpl(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.util.OWLComponentFactoryImpl
 
OWLConstantEditor - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 01-Aug-2007

OWLConstantEditor(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.frame.OWLConstantEditor
 
OWLCustomWorkspaceTabsManager - Class in org.protege.editor.owl.model
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Sep 10, 2008

Overloads the basic P4 custom tab plugin mechanism to allow the base type to be more specialised ie all OWL tabs should implement OWLWorkspaceViewsTab in order for selection etc to work

OWLCustomWorkspaceTabsManager() - Constructor for class org.protege.editor.owl.model.OWLCustomWorkspaceTabsManager
 
OWLCustomWorkspaceTabsManager.CustomOWLTabPlugin - Class in org.protege.editor.owl.model
 
OWLCustomWorkspaceTabsManager.CustomOWLTabPlugin(String, TabbedWorkspace) - Constructor for class org.protege.editor.owl.model.OWLCustomWorkspaceTabsManager.CustomOWLTabPlugin
 
owlDataFactory - Variable in class org.protege.editor.owl.model.util.ClosureAxiomFactory
 
OWLDataPropertyAnnotationsViewComponent - Class in org.protege.editor.owl.ui.view
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 16-Feb-2007

OWLDataPropertyAnnotationsViewComponent() - Constructor for class org.protege.editor.owl.ui.view.OWLDataPropertyAnnotationsViewComponent
 
OWLDataPropertyAssertionAxiomFrameSection - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 30-Jan-2007

OWLDataPropertyAssertionAxiomFrameSection(OWLEditorKit, OWLFrame<? extends OWLIndividual>) - Constructor for class org.protege.editor.owl.ui.frame.OWLDataPropertyAssertionAxiomFrameSection
 
OWLDataPropertyAssertionAxiomFrameSectionRow - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 30-Jan-2007

OWLDataPropertyAssertionAxiomFrameSectionRow(OWLEditorKit, OWLFrameSection, OWLOntology, OWLIndividual, OWLDataPropertyAssertionAxiom) - Constructor for class org.protege.editor.owl.ui.frame.OWLDataPropertyAssertionAxiomFrameSectionRow
 
OWLDataPropertyCharacteristicsViewComponent - Class in org.protege.editor.owl.ui.view
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 21-Feb-2007

OWLDataPropertyCharacteristicsViewComponent() - Constructor for class org.protege.editor.owl.ui.view.OWLDataPropertyCharacteristicsViewComponent
 
OWLDataPropertyConstantPair - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 15-Feb-2007

OWLDataPropertyConstantPair(OWLDataProperty, OWLConstant) - Constructor for class org.protege.editor.owl.ui.frame.OWLDataPropertyConstantPair
 
OWLDataPropertyDescriptionFrame - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 16-Feb-2007

OWLDataPropertyDescriptionFrame(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.frame.OWLDataPropertyDescriptionFrame
 
OWLDataPropertyDescriptionViewComponent - Class in org.protege.editor.owl.ui.view
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 16-Feb-2007

OWLDataPropertyDescriptionViewComponent() - Constructor for class org.protege.editor.owl.ui.view.OWLDataPropertyDescriptionViewComponent
 
OWLDataPropertyDomainFrameSection - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 16-Feb-2007

OWLDataPropertyDomainFrameSection(OWLEditorKit, OWLFrame<OWLDataProperty>) - Constructor for class org.protege.editor.owl.ui.frame.OWLDataPropertyDomainFrameSection
 
OWLDataPropertyDomainFrameSectionRow - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 16-Feb-2007

OWLDataPropertyDomainFrameSectionRow(OWLEditorKit, OWLFrameSection, OWLOntology, OWLDataProperty, OWLDataPropertyDomainAxiom) - Constructor for class org.protege.editor.owl.ui.frame.OWLDataPropertyDomainFrameSectionRow
 
OWLDataPropertyDomainsAndRangesFrame - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 16-Feb-2007

OWLDataPropertyDomainsAndRangesFrame(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.frame.OWLDataPropertyDomainsAndRangesFrame
 
OWLDataPropertyDomainsAndRangesViewComponent - Class in org.protege.editor.owl.ui.view
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 16-Feb-2007

OWLDataPropertyDomainsAndRangesViewComponent() - Constructor for class org.protege.editor.owl.ui.view.OWLDataPropertyDomainsAndRangesViewComponent
 
OWLDataPropertyEditor - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 16-Feb-2007

OWLDataPropertyEditor(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.frame.OWLDataPropertyEditor
 
OWLDataPropertyHierarchyProvider - Class in org.protege.editor.owl.model.hierarchy
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 23-Jan-2007

OWLDataPropertyHierarchyProvider(OWLOntologyManager) - Constructor for class org.protege.editor.owl.model.hierarchy.OWLDataPropertyHierarchyProvider
 
OWLDataPropertyHierarchyViewComponent - Class in org.protege.editor.owl.ui.view
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 23-Jan-2007

OWLDataPropertyHierarchyViewComponent() - Constructor for class org.protege.editor.owl.ui.view.OWLDataPropertyHierarchyViewComponent
 
OWLDataPropertyRangeFrameSection - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 16-Feb-2007

OWLDataPropertyRangeFrameSection(OWLEditorKit, OWLFrame<? extends OWLDataProperty>) - Constructor for class org.protege.editor.owl.ui.frame.OWLDataPropertyRangeFrameSection
 
OWLDataPropertyRangeFrameSectionRow - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 16-Feb-2007

OWLDataPropertyRangeFrameSectionRow(OWLEditorKit, OWLFrameSection, OWLOntology, OWLDataProperty, OWLDataPropertyRangeAxiom) - Constructor for class org.protege.editor.owl.ui.frame.OWLDataPropertyRangeFrameSectionRow
 
OWLDataPropertyRelationshipEditor - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 20-May-2007

OWLDataPropertyRelationshipEditor(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.frame.OWLDataPropertyRelationshipEditor
 
OWLDataPropertySelectorPanel - Class in org.protege.editor.owl.ui.selector
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 27-Sep-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLDataPropertySelectorPanel(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.selector.OWLDataPropertySelectorPanel
 
OWLDataPropertySelectorPanel(OWLEditorKit, boolean) - Constructor for class org.protege.editor.owl.ui.selector.OWLDataPropertySelectorPanel
 
OWLDataPropertySelectorPanel(OWLEditorKit, boolean, OWLObjectHierarchyProvider<OWLDataProperty>) - Constructor for class org.protege.editor.owl.ui.selector.OWLDataPropertySelectorPanel
 
OWLDataPropertySetEditor - Class in org.protege.editor.owl.ui.frame.editor
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Apr 6, 2009

OWLDataPropertySetEditor(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.frame.editor.OWLDataPropertySetEditor
 
OWLDataPropertyTreeDropHandler - Class in org.protege.editor.owl.ui.view
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 23-Jan-2007

OWLDataPropertyTreeDropHandler(OWLModelManager) - Constructor for class org.protege.editor.owl.ui.view.OWLDataPropertyTreeDropHandler
 
OWLDataPropertyUsageViewComponent - Class in org.protege.editor.owl.ui.view
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 22-Feb-2007

OWLDataPropertyUsageViewComponent() - Constructor for class org.protege.editor.owl.ui.view.OWLDataPropertyUsageViewComponent
 
OWLDataRangeChecker - Class in org.protege.editor.owl.ui.clsdescriptioneditor
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Dec 8, 2008

OWLDataRangeChecker(OWLModelManager) - Constructor for class org.protege.editor.owl.ui.clsdescriptioneditor.OWLDataRangeChecker
 
OWLDataRangeEditor - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 24-Feb-2007

OWLDataRangeEditor(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.frame.OWLDataRangeEditor
 
OWLDataRestrictionCreatorPanel - Class in org.protege.editor.owl.ui.editor
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Dec 23, 2008

OWLDataRestrictionCreatorPanel() - Constructor for class org.protege.editor.owl.ui.editor.OWLDataRestrictionCreatorPanel
 
OWLDataRestrictionCreatorPanel - Class in org.protege.editor.owl.ui.frame
Deprecated. use org.protege.editor.owl.ui.editor.OWLDataRestrictionCreatorPanel
OWLDataRestrictionCreatorPanel(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.frame.OWLDataRestrictionCreatorPanel
Deprecated.  
OWLDataTypeSelectorPanel - Class in org.protege.editor.owl.ui.selector
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 27-Sep-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

Should extend AbstractSelectorPanel

OWLDataTypeSelectorPanel(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.selector.OWLDataTypeSelectorPanel
 
OWLDataTypeSelectorPanel(OWLEditorKit, boolean) - Constructor for class org.protege.editor.owl.ui.selector.OWLDataTypeSelectorPanel
 
OWLDataTypeSelectorPanel(OWLEditorKit, boolean, boolean) - Constructor for class org.protege.editor.owl.ui.selector.OWLDataTypeSelectorPanel
 
OWLDataTypeUtils - Class in org.protege.editor.owl.model.util
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Sep 11, 2008

OWLDataTypeUtils(OWLOntologyManager) - Constructor for class org.protege.editor.owl.model.util.OWLDataTypeUtils
 
OWLDescriptionAutoCompleter - Class in org.protege.editor.owl.ui.clsdescriptioneditor
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: May 4, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLDescriptionAutoCompleter(OWLEditorKit, JTextComponent, OWLExpressionChecker) - Constructor for class org.protege.editor.owl.ui.clsdescriptioneditor.OWLDescriptionAutoCompleter
 
OWLDescriptionChecker - Class in org.protege.editor.owl.ui.clsdescriptioneditor
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 11-Oct-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLDescriptionChecker(OWLModelManager) - Constructor for class org.protege.editor.owl.ui.clsdescriptioneditor.OWLDescriptionChecker
 
OWLDescriptionComparator - Class in org.protege.editor.owl.ui
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 09-May-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLDescriptionComparator(OWLModelManager) - Constructor for class org.protege.editor.owl.ui.OWLDescriptionComparator
 
OWLDescriptionEditor - Interface in org.protege.editor.owl.ui.editor
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Dec 23, 2008

OWLDescriptionEditorPlugin - Interface in org.protege.editor.owl.ui.editor
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Feb 26, 2009

OWLDescriptionEditorPluginImpl - Class in org.protege.editor.owl.ui.editor
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Feb 26, 2009

OWLDescriptionEditorPluginImpl(OWLEditorKit, IExtension) - Constructor for class org.protege.editor.owl.ui.editor.OWLDescriptionEditorPluginImpl
 
OWLDescriptionEditorPluginLoader - Class in org.protege.editor.owl.ui.editor
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Feb 26, 2009

OWLDescriptionEditorPluginLoader(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.editor.OWLDescriptionEditorPluginLoader
 
OWLDescriptionEditorViewComponent - Class in org.coode.dlquery
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 22-Aug-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLDescriptionEditorViewComponent() - Constructor for class org.coode.dlquery.OWLDescriptionEditorViewComponent
 
OWLDescriptionExpressionEditor - Class in org.protege.editor.owl.ui.editor
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Feb 26, 2009

OWLDescriptionExpressionEditor() - Constructor for class org.protege.editor.owl.ui.editor.OWLDescriptionExpressionEditor
 
OWLDescriptionLeafNode - Class in org.protege.editor.owl.model.description
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 06-Oct-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLDescriptionLeafNode(OWLDescription) - Constructor for class org.protege.editor.owl.model.description.OWLDescriptionLeafNode
 
OWLDescriptionNode - Interface in org.protege.editor.owl.model.description
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 06-Oct-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLDescriptionNodeDifference - Class in org.protege.editor.owl.model.description
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 06-Oct-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLDescriptionNodeDifference(OWLDescriptionNode, OWLDescriptionNode) - Constructor for class org.protege.editor.owl.model.description.OWLDescriptionNodeDifference
 
OWLDescriptionNodePossibly - Class in org.protege.editor.owl.model.description
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 14-Oct-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLDescriptionNodePossibly(OWLDescriptionNode, OWLDescriptionNode) - Constructor for class org.protege.editor.owl.model.description.OWLDescriptionNodePossibly
 
OWLDescriptionNodeQueryVisitor<O extends org.semanticweb.owl.model.OWLObject> - Class in org.coode.dlquery
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 11-Oct-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLDescriptionNodeQueryVisitor(OWLModelManager, OWLReasoner, ReasonerQueryInvoker<O>) - Constructor for class org.coode.dlquery.OWLDescriptionNodeQueryVisitor
 
OWLDescriptionNodeUnion - Class in org.protege.editor.owl.model.description
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 06-Oct-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLDescriptionNodeUnion(OWLDescriptionNode, OWLDescriptionNode) - Constructor for class org.protege.editor.owl.model.description.OWLDescriptionNodeUnion
 
OWLDescriptionNodeVisitor - Interface in org.protege.editor.owl.model.description
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 06-Oct-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLDifferentIndividualAxiomFrameSectionRow - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 29-Jan-2007

OWLDifferentIndividualAxiomFrameSectionRow(OWLEditorKit, OWLFrameSection, OWLOntology, OWLIndividual, OWLDifferentIndividualsAxiom) - Constructor for class org.protege.editor.owl.ui.frame.OWLDifferentIndividualAxiomFrameSectionRow
 
OWLDifferentIndividualsAxiomFrameSection - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 29-Jan-2007

OWLDifferentIndividualsAxiomFrameSection(OWLEditorKit, OWLFrame<? extends OWLIndividual>) - Constructor for class org.protege.editor.owl.ui.frame.OWLDifferentIndividualsAxiomFrameSection
 
OWLDisjointClassesAxiomFrameSection - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 19-Jan-2007

OWLDisjointClassesAxiomFrameSection(OWLEditorKit, OWLFrame<OWLClass>) - Constructor for class org.protege.editor.owl.ui.frame.OWLDisjointClassesAxiomFrameSection
 
OWLDisjointClassesAxiomFrameSectionRow - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 19-Jan-2007

OWLDisjointClassesAxiomFrameSectionRow(OWLEditorKit, OWLFrameSection, OWLOntology, OWLDescription, OWLDisjointClassesAxiom) - Constructor for class org.protege.editor.owl.ui.frame.OWLDisjointClassesAxiomFrameSectionRow
 
OWLDisjointClassesViewComponent - Class in org.protege.editor.owl.ui.view
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 19-Jan-2007

OWLDisjointClassesViewComponent() - Constructor for class org.protege.editor.owl.ui.view.OWLDisjointClassesViewComponent
 
OWLDisjointDataPropertiesFrameSection - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 16-Feb-2007

OWLDisjointDataPropertiesFrameSection(OWLEditorKit, OWLFrame<? extends OWLDataProperty>) - Constructor for class org.protege.editor.owl.ui.frame.OWLDisjointDataPropertiesFrameSection
 
OWLDisjointDataPropertiesFrameSectionRow - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 16-Feb-2007

OWLDisjointDataPropertiesFrameSectionRow(OWLEditorKit, OWLFrameSection, OWLOntology, OWLDataProperty, OWLDisjointDataPropertiesAxiom) - Constructor for class org.protege.editor.owl.ui.frame.OWLDisjointDataPropertiesFrameSectionRow
 
OWLDisjointObjectPropertiesAxiomFrameSectionRow - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 29-Jan-2007

OWLDisjointObjectPropertiesAxiomFrameSectionRow(OWLEditorKit, OWLFrameSection, OWLOntology, OWLObjectProperty, OWLDisjointObjectPropertiesAxiom) - Constructor for class org.protege.editor.owl.ui.frame.OWLDisjointObjectPropertiesAxiomFrameSectionRow
 
OWLDisjointObjectPropertiesFrameSection - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 29-Jan-2007

OWLDisjointObjectPropertiesFrameSection(OWLEditorKit, OWLFrame<? extends OWLObjectProperty>) - Constructor for class org.protege.editor.owl.ui.frame.OWLDisjointObjectPropertiesFrameSection
 
OWLEditorKit - Class in org.protege.editor.owl
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Mar 17, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLEditorKit(OWLEditorKitFactory) - Constructor for class org.protege.editor.owl.OWLEditorKit
 
OWLEditorKitFactory - Class in org.protege.editor.owl
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Mar 17, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLEditorKitFactory() - Constructor for class org.protege.editor.owl.OWLEditorKitFactory
 
OWLEditorKitHook - Class in org.protege.editor.owl.model
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Oct 15, 2008

OWLEditorKitHook() - Constructor for class org.protege.editor.owl.model.OWLEditorKitHook
 
OWLEntityAnnotationValueRenderer - Class in org.protege.editor.owl.ui.renderer
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 18-May-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLEntityAnnotationValueRenderer() - Constructor for class org.protege.editor.owl.ui.renderer.OWLEntityAnnotationValueRenderer
 
OWLEntityColorProvider - Class in org.protege.editor.owl.ui.renderer
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 19-Jul-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLEntityColorProvider() - Constructor for class org.protege.editor.owl.ui.renderer.OWLEntityColorProvider
 
OWLEntityColorProviderPlugin - Interface in org.protege.editor.owl.ui.renderer
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 19-Jul-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLEntityColorProviderPluginJPFImpl - Class in org.protege.editor.owl.ui.renderer
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 19-Jul-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLEntityColorProviderPluginJPFImpl(OWLModelManager, IExtension) - Constructor for class org.protege.editor.owl.ui.renderer.OWLEntityColorProviderPluginJPFImpl
 
OWLEntityColorProviderPluginLoader - Class in org.protege.editor.owl.ui.renderer
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 19-Jul-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLEntityColorProviderPluginLoader(OWLModelManager) - Constructor for class org.protege.editor.owl.ui.renderer.OWLEntityColorProviderPluginLoader
 
OWLEntityComparator<E extends org.semanticweb.owl.model.OWLEntity> - Class in org.protege.editor.owl.ui
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Apr 27, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLEntityComparator(OWLModelManager) - Constructor for class org.protege.editor.owl.ui.OWLEntityComparator
 
OWLEntityCreationException - Exception in org.protege.editor.owl.model.entity
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Sep 18, 2008

OWLEntityCreationException(String) - Constructor for exception org.protege.editor.owl.model.entity.OWLEntityCreationException
 
OWLEntityCreationException(String, Throwable) - Constructor for exception org.protege.editor.owl.model.entity.OWLEntityCreationException
 
OWLEntityCreationException(Throwable) - Constructor for exception org.protege.editor.owl.model.entity.OWLEntityCreationException
 
OWLEntityCreationPanel<T extends org.semanticweb.owl.model.OWLEntity> - Class in org.protege.editor.owl.ui
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 23-Sep-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLEntityCreationPanel(OWLEditorKit, String, Class<T>) - Constructor for class org.protege.editor.owl.ui.OWLEntityCreationPanel
 
OWLEntityCreationSet<E extends org.semanticweb.owl.model.OWLEntity> - Class in org.protege.editor.owl.model.entity
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 23-Sep-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLEntityCreationSet(E, List<? extends OWLOntologyChange>) - Constructor for class org.protege.editor.owl.model.entity.OWLEntityCreationSet
 
OWLEntityCreationSet(E, OWLOntology) - Constructor for class org.protege.editor.owl.model.entity.OWLEntityCreationSet
 
OWLEntityDisplayProvider - Interface in org.protege.editor.owl.model
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 25-May-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLEntityFactory - Interface in org.protege.editor.owl.model.entity
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 23-Sep-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLEntityFinderViewComponent - Class in org.protege.editor.owl.ui.find
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 16-May-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLEntityFinderViewComponent(Set<OWLEntity>) - Constructor for class org.protege.editor.owl.ui.find.OWLEntityFinderViewComponent
 
OWLEntityFindPanel - Class in org.protege.editor.owl.ui.find
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 16-May-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLEntityFindPanel(OWLEditorKit, Findable) - Constructor for class org.protege.editor.owl.ui.find.OWLEntityFindPanel
 
OWLEntityFrame - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 11-Jul-2007

OWLEntityFrame(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.frame.OWLEntityFrame
 
OWLEntityListPanel<E extends org.semanticweb.owl.model.OWLEntity> - Class in org.protege.editor.owl.ui.list
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 19-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLEntityListPanel(Set<E>, OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.list.OWLEntityListPanel
 
OWLEntityListPanel(String, Set<E>, OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.list.OWLEntityListPanel
 
OWLEntityNavigationMediator - Class in org.protege.editor.owl.ui.navigation
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 07-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLEntityNavigationMediator(OWLEditorKit, Action, Action) - Constructor for class org.protege.editor.owl.ui.navigation.OWLEntityNavigationMediator
 
OWLEntityNavPanel - Class in org.protege.editor.owl.ui.navigation
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 07-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLEntityNavPanel(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.navigation.OWLEntityNavPanel
 
OWLEntityQNameRenderer - Class in org.protege.editor.owl.ui.renderer
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 20-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLEntityQNameRenderer() - Constructor for class org.protege.editor.owl.ui.renderer.OWLEntityQNameRenderer
 
OWLEntityRenderer - Interface in org.protege.editor.owl.ui.renderer
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Apr 2, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLEntityRendererFactory - Interface in org.protege.editor.owl.ui.renderer
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 21-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLEntityRendererFactoryLoader - Class in org.protege.editor.owl.ui.renderer
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 21-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLEntityRendererFactoryLoader() - Constructor for class org.protege.editor.owl.ui.renderer.OWLEntityRendererFactoryLoader
 
OWLEntityRendererImpl - Class in org.protege.editor.owl.ui.renderer
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Apr 2, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

A simple renderer that renderers an entity using its URI fragment if it exists, and if not, renders the full URI.

OWLEntityRendererImpl() - Constructor for class org.protege.editor.owl.ui.renderer.OWLEntityRendererImpl
 
OWLEntityRendererListener - Interface in org.protege.editor.owl.ui.renderer
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 30-Aug-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLEntityRenderingCache - Interface in org.protege.editor.owl.model.cache
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 21-Sep-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLEntityRenderingCacheImpl - Class in org.protege.editor.owl.model.cache
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 21-Sep-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLEntityRenderingCacheImpl() - Constructor for class org.protege.editor.owl.model.cache.OWLEntityRenderingCacheImpl
 
OWLEntitySelectorPanel - Class in org.protege.editor.owl.ui
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 28-Oct-2007

OWLEntitySelectorPanel(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.OWLEntitySelectorPanel
 
OWLEntitySelectorPanel - Class in org.protege.editor.owl.ui.selector
Author: Matthew Horridge
The University Of Manchester
Information Management Group
Date: 21-Sep-2008

OWLEntitySelectorPanel(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.selector.OWLEntitySelectorPanel
 
OWLEntityURIRegenerator - Class in org.protege.editor.owl.model.refactor.ontology
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Aug 21, 2008

Takes a URI and replaces the fragment/last path element with a generated ID If no fragment exists, adds the ID directly

OWLEntityURIRegenerator(OWLModelManager) - Constructor for class org.protege.editor.owl.model.refactor.ontology.OWLEntityURIRegenerator
 
OWLEntityUsageViewComponent - Class in org.protege.editor.owl.ui.view
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 21-Feb-2007

OWLEntityUsageViewComponent() - Constructor for class org.protege.editor.owl.ui.view.OWLEntityUsageViewComponent
 
OWLEntityViewComponent - Class in org.protege.editor.owl.ui.view
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 11-Jul-2007

OWLEntityViewComponent() - Constructor for class org.protege.editor.owl.ui.view.OWLEntityViewComponent
 
OWLEquivalentClassesAxiomFrameSection - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 19-Jan-2007

OWLEquivalentClassesAxiomFrameSection(OWLEditorKit, OWLFrame<OWLClass>) - Constructor for class org.protege.editor.owl.ui.frame.OWLEquivalentClassesAxiomFrameSection
 
OWLEquivalentClassesAxiomFrameSectionRow - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 19-Jan-2007

OWLEquivalentClassesAxiomFrameSectionRow(OWLEditorKit, OWLFrameSection, OWLOntology, OWLDescription, OWLEquivalentClassesAxiom) - Constructor for class org.protege.editor.owl.ui.frame.OWLEquivalentClassesAxiomFrameSectionRow
 
OWLEquivalentDataPropertiesFrameSection - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 16-Feb-2007

OWLEquivalentDataPropertiesFrameSection(OWLEditorKit, OWLFrame<? extends OWLDataProperty>) - Constructor for class org.protege.editor.owl.ui.frame.OWLEquivalentDataPropertiesFrameSection
 
OWLEquivalentDataPropertiesFrameSectionRow - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 16-Feb-2007

OWLEquivalentDataPropertiesFrameSectionRow(OWLEditorKit, OWLFrameSection, OWLOntology, OWLDataProperty, OWLEquivalentDataPropertiesAxiom) - Constructor for class org.protege.editor.owl.ui.frame.OWLEquivalentDataPropertiesFrameSectionRow
 
OWLEquivalentObjectPropertiesAxiomFrameSection - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 29-Jan-2007

OWLEquivalentObjectPropertiesAxiomFrameSection(OWLEditorKit, OWLFrame<? extends OWLObjectProperty>) - Constructor for class org.protege.editor.owl.ui.frame.OWLEquivalentObjectPropertiesAxiomFrameSection
 
OWLEquivalentObjectPropertiesAxiomFrameSectionRow - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 29-Jan-2007

OWLEquivalentObjectPropertiesAxiomFrameSectionRow(OWLEditorKit, OWLFrameSection, OWLOntology, OWLObjectProperty, OWLEquivalentObjectPropertiesAxiom) - Constructor for class org.protege.editor.owl.ui.frame.OWLEquivalentObjectPropertiesAxiomFrameSectionRow
 
OWLExpressionChecker<O> - Interface in org.protege.editor.owl.ui.clsdescriptioneditor
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 11-Oct-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLExpressionCheckerFactory - Interface in org.protege.editor.owl.ui.clsdescriptioneditor
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Jul 23, 2008

OWLExpressionHistoryCompleter - Class in org.protege.editor.owl.ui.clsdescriptioneditor
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Sep 12, 2008

Implements a lookahead search for expressions based on the current position of the caret.

OWLExpressionHistoryCompleter(OWLEditorKit, JTextComponent) - Constructor for class org.protege.editor.owl.ui.clsdescriptioneditor.OWLExpressionHistoryCompleter
 
OWLExpressionParserException - Exception in org.protege.editor.owl.model.description
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: May 2, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLExpressionParserException(String, int, int, boolean, boolean, boolean, boolean, boolean, Set<String>) - Constructor for exception org.protege.editor.owl.model.description.OWLExpressionParserException
 
OWLExpressionParserException(Throwable) - Constructor for exception org.protege.editor.owl.model.description.OWLExpressionParserException
 
OWLExpressionUserCache - Class in org.protege.editor.owl.model.cache
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Sep 10, 2008

OWLFrame<R> - Interface in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 19-Jan-2007

OWLFrameAction - Interface in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 01-Feb-2007

OWLFrameList2<R> - Class in org.protege.editor.owl.ui.framelist
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 29-Jan-2007

An OWLFrameList2 is a common component that displays sections and section content.

OWLFrameList2(OWLEditorKit, OWLFrame<R>) - Constructor for class org.protege.editor.owl.ui.framelist.OWLFrameList2
 
OWLFrameListComponent<R extends org.semanticweb.owl.model.OWLObject> - Class in org.protege.editor.owl.ui.framelist
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 02-Jul-2007

OWLFrameListComponent(OWLEditorKit, OWLFrame<R>) - Constructor for class org.protege.editor.owl.ui.framelist.OWLFrameListComponent
 
OWLFrameListener - Interface in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 19-Jan-2007

OWLFrameListExplanationHandler - Class in org.protege.editor.owl.ui.framelist
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 18-Dec-2007

OWLFrameListExplanationHandler(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.framelist.OWLFrameListExplanationHandler
 
OWLFrameListInferredSectionRowBorder - Class in org.protege.editor.owl.ui.framelist
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 18-Dec-2007

OWLFrameListInferredSectionRowBorder() - Constructor for class org.protege.editor.owl.ui.framelist.OWLFrameListInferredSectionRowBorder
 
OWLFrameListPopupMenuAction<R> - Class in org.protege.editor.owl.ui.framelist
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 23-Feb-2007

OWLFrameListPopupMenuAction() - Constructor for class org.protege.editor.owl.ui.framelist.OWLFrameListPopupMenuAction
 
OWLFrameListRenderer - Class in org.protege.editor.owl.ui.framelist
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 29-Jan-2007

OWLFrameListRenderer(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.framelist.OWLFrameListRenderer
 
OWLFrameObject<R,A extends org.semanticweb.owl.model.OWLAxiom,E> - Interface in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 25-Jan-2007

OWLFrameSection<R,A extends org.semanticweb.owl.model.OWLAxiom,E> - Interface in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 19-Jan-2007

OWLFrameSectionRow<R,A extends org.semanticweb.owl.model.OWLAxiom,E> - Interface in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 19-Jan-2007

An OWLFrameSectionRow constitues a row in a frame section, which represents an axiom.

OWLFrameSectionRowObjectEditor<O> - Interface in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 15-Feb-2007

OWLFrameSectionRowObjectEditorHandler<O> - Interface in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 15-Feb-2007

OWLFunctionalSyntaxRenderingViewComponent - Class in org.protege.editor.owl.ui.view
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 20-Mar-2007

OWLFunctionalSyntaxRenderingViewComponent() - Constructor for class org.protege.editor.owl.ui.view.OWLFunctionalSyntaxRenderingViewComponent
 
OWLGeneralAxiomEditor - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 23-Apr-2007

OWLGeneralAxiomEditor(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.frame.OWLGeneralAxiomEditor
 
OWLGeneralAxiomsViewComponent - Class in org.protege.editor.owl.ui.view
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 23-Apr-2007

OWLGeneralAxiomsViewComponent() - Constructor for class org.protege.editor.owl.ui.view.OWLGeneralAxiomsViewComponent
 
OWLGeneralClassAxiomFrameSectionRow - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 23-Apr-2007

OWLGeneralClassAxiomFrameSectionRow(OWLEditorKit, OWLFrameSection, OWLOntology, OWLOntology, OWLClassAxiom) - Constructor for class org.protege.editor.owl.ui.frame.OWLGeneralClassAxiomFrameSectionRow
 
OWLGeneralClassAxiomsFrame - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 23-Apr-2007

OWLGeneralClassAxiomsFrame(OWLEditorKit, OWLOntologyManager) - Constructor for class org.protege.editor.owl.ui.frame.OWLGeneralClassAxiomsFrame
 
OWLGeneralClassAxiomsFrameSection - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 23-Apr-2007

OWLGeneralClassAxiomsFrameSection(OWLEditorKit, OWLFrame<? extends OWLOntology>) - Constructor for class org.protege.editor.owl.ui.frame.OWLGeneralClassAxiomsFrameSection
 
OWLHierarchyManager - Interface in org.protege.editor.owl.model.hierarchy
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Nov 27, 2008

OWLHierarchyManagerImpl - Class in org.protege.editor.owl.model.hierarchy
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Nov 27, 2008

OWLHierarchyManagerImpl(OWLModelManager) - Constructor for class org.protege.editor.owl.model.hierarchy.OWLHierarchyManagerImpl
 
OWLIconProvider - Interface in org.protege.editor.owl.ui.renderer
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Apr 2, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLIconProviderImpl - Class in org.protege.editor.owl.ui.renderer
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Apr 2, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLIconProviderImpl(OWLModelManager) - Constructor for class org.protege.editor.owl.ui.renderer.OWLIconProviderImpl
 
OWLIcons - Class in org.protege.editor.owl.ui
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Apr 2, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLIcons() - Constructor for class org.protege.editor.owl.ui.OWLIcons
 
OWLImportsDeclarationAxiomFrameSectionRow - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 24-Jan-2007

OWLImportsDeclarationAxiomFrameSectionRow(OWLEditorKit, OWLFrameSection, OWLOntology, OWLOntology, OWLImportsDeclaration) - Constructor for class org.protege.editor.owl.ui.frame.OWLImportsDeclarationAxiomFrameSectionRow
 
OWLImportsDeclarationEditor - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 20-Feb-2007

OWLImportsDeclarationEditor(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.frame.OWLImportsDeclarationEditor
 
OWLImportsDeclarationFrameSection - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 24-Jan-2007

OWLImportsDeclarationFrameSection(OWLEditorKit, OWLFrame<OWLOntology>) - Constructor for class org.protege.editor.owl.ui.frame.OWLImportsDeclarationFrameSection
 
OWLImportsDeclarationsFrame - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 24-Jan-2007

OWLImportsDeclarationsFrame(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.frame.OWLImportsDeclarationsFrame
 
OWLImportsDeclarationsViewComponent - Class in org.protege.editor.owl.ui.view
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 24-Jan-2007

OWLImportsDeclarationsViewComponent() - Constructor for class org.protege.editor.owl.ui.view.OWLImportsDeclarationsViewComponent
 
OWLIndirectImportsFrameSection - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 16-Feb-2007

OWLIndirectImportsFrameSection(OWLEditorKit, OWLFrame<? extends OWLOntology>) - Constructor for class org.protege.editor.owl.ui.frame.OWLIndirectImportsFrameSection
 
OWLIndividualAnnotationsViewComponent - Class in org.protege.editor.owl.ui.view
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 04-Feb-2007

OWLIndividualAnnotationsViewComponent() - Constructor for class org.protege.editor.owl.ui.view.OWLIndividualAnnotationsViewComponent
 
OWLIndividualAnnotationValueEditor - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 01-Aug-2007

OWLIndividualAnnotationValueEditor(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.frame.OWLIndividualAnnotationValueEditor
 
OWLIndividualDescriptionViewComponent - Class in org.protege.editor.owl.ui.view
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 29-Jan-2007

OWLIndividualDescriptionViewComponent() - Constructor for class org.protege.editor.owl.ui.view.OWLIndividualDescriptionViewComponent
 
OWLIndividualEditor - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 09-Feb-2007

OWLIndividualEditor(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.frame.OWLIndividualEditor
 
OWLIndividualEditor(OWLEditorKit, int) - Constructor for class org.protege.editor.owl.ui.frame.OWLIndividualEditor
Builds an OWLIndividualEditor instance with the input selection mode The legal values are the same of the ListSelectionModel constants and the default value is ListSelectionModel.SINGLE_SELECTION
OWLIndividualFrame - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 29-Jan-2007

OWLIndividualFrame(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.frame.OWLIndividualFrame
 
OWLIndividualListComponent - Class in org.protege.editor.owl.ui
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 28-Oct-2007

OWLIndividualListComponent(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.OWLIndividualListComponent
 
OWLIndividualListViewComponent - Class in org.protege.editor.owl.ui.view
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 29-Jan-2007

This definitely needs a rethink - it is a totally inefficient hack!

OWLIndividualListViewComponent() - Constructor for class org.protege.editor.owl.ui.view.OWLIndividualListViewComponent
 
OWLIndividualPropertyAssertionsFrame - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 30-Jan-2007

OWLIndividualPropertyAssertionsFrame(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.frame.OWLIndividualPropertyAssertionsFrame
 
OWLIndividualPropertyAssertionsViewComponent - Class in org.protege.editor.owl.ui.view
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 30-Jan-2007

OWLIndividualPropertyAssertionsViewComponent() - Constructor for class org.protege.editor.owl.ui.view.OWLIndividualPropertyAssertionsViewComponent
 
OWLIndividualsByClassViewComponent - Class in org.protege.editor.owl.ui.view
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 24-May-2007

OWLIndividualsByClassViewComponent() - Constructor for class org.protege.editor.owl.ui.view.OWLIndividualsByClassViewComponent
 
OWLIndividualsByInferredTypeViewComponent - Class in org.protege.editor.owl.ui.view
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 24-May-2007

OWLIndividualsByInferredTypeViewComponent() - Constructor for class org.protege.editor.owl.ui.view.OWLIndividualsByInferredTypeViewComponent
 
OWLIndividualSelectorPanel - Class in org.protege.editor.owl.ui.selector
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 05-Jul-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLIndividualSelectorPanel(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.selector.OWLIndividualSelectorPanel
 
OWLIndividualSelectorPanel(OWLEditorKit, boolean) - Constructor for class org.protege.editor.owl.ui.selector.OWLIndividualSelectorPanel
 
OWLIndividualSelectorPanel(OWLEditorKit, boolean, Set<OWLOntology>) - Constructor for class org.protege.editor.owl.ui.selector.OWLIndividualSelectorPanel
 
OWLIndividualSelectorPanel(OWLEditorKit, int) - Constructor for class org.protege.editor.owl.ui.selector.OWLIndividualSelectorPanel
 
OWLIndividualSelectorPanel(OWLEditorKit, boolean, Set<OWLOntology>, int) - Constructor for class org.protege.editor.owl.ui.selector.OWLIndividualSelectorPanel
Builds an OWLIndividualSelectorPanel with the input selection mode.
OWLIndividualSetEditor - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 22-Feb-2007

OWLIndividualSetEditor(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.frame.OWLIndividualSetEditor
 
OWLIndividualUsageViewComponent - Class in org.protege.editor.owl.ui.view
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 22-Feb-2007

OWLIndividualUsageViewComponent() - Constructor for class org.protege.editor.owl.ui.view.OWLIndividualUsageViewComponent
 
OWLInverseObjectPropertiesAxiomFrameSection - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 29-Jan-2007

OWLInverseObjectPropertiesAxiomFrameSection(OWLEditorKit, OWLFrame<? extends OWLObjectProperty>) - Constructor for class org.protege.editor.owl.ui.frame.OWLInverseObjectPropertiesAxiomFrameSection
 
OWLInverseObjectPropertiesAxiomFrameSectionRow - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 29-Jan-2007

OWLInverseObjectPropertiesAxiomFrameSectionRow(OWLEditorKit, OWLFrameSection, OWLOntology, OWLObjectProperty, OWLInverseObjectPropertiesAxiom) - Constructor for class org.protege.editor.owl.ui.frame.OWLInverseObjectPropertiesAxiomFrameSectionRow
 
OWLLinkedObjectList - Class in org.protege.editor.owl.ui.list
Author: Matthew Horridge
The University Of Manchester
Information Management Group
Date: 04-Oct-2008

OWLLinkedObjectList(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.list.OWLLinkedObjectList
 
OWLLinkedObjectTree - Class in org.protege.editor.owl.ui.tree
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: May 28, 2008

OWLLinkedObjectTree(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.tree.OWLLinkedObjectTree
 
OWLMembersListViewComponent - Class in org.protege.editor.owl.ui.view
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Oct 14, 2008

Only shows the members of the currently selected class

OWLMembersListViewComponent() - Constructor for class org.protege.editor.owl.ui.view.OWLMembersListViewComponent
 
OWLModelManager - Interface in org.protege.editor.owl.model
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 19-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLModelManagerChangeEvent - Class in org.protege.editor.owl.model.event
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Apr 19, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLModelManagerChangeEvent(OWLModelManager, EventType) - Constructor for class org.protege.editor.owl.model.event.OWLModelManagerChangeEvent
 
OWLModelManagerDescriptor - Class in org.protege.editor.owl
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 25-May-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLModelManagerDescriptor(URI) - Constructor for class org.protege.editor.owl.OWLModelManagerDescriptor
 
OWLModelManagerEntityRenderer - Interface in org.protege.editor.owl.ui.renderer
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 06-Sep-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLModelManagerImpl - Class in org.protege.editor.owl.model
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Mar 17, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

The OWLModelManager acts as a controller over a collection of ontologies (ontologies that are related to each other via owl:imports) and the various UI components that are used to access the ontology.

OWLModelManagerImpl() - Constructor for class org.protege.editor.owl.model.OWLModelManagerImpl
 
OWLModelManagerListener - Interface in org.protege.editor.owl.model.event
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Apr 19, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLModelManagerTree<N extends org.semanticweb.owl.model.OWLObject> - Class in org.protege.editor.owl.ui.tree
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 01-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLModelManagerTree(OWLEditorKit, OWLObjectHierarchyProvider<N>) - Constructor for class org.protege.editor.owl.ui.tree.OWLModelManagerTree
 
OWLModelManagerTree(OWLEditorKit, OWLObjectHierarchyProvider<N>, Set<N>) - Constructor for class org.protege.editor.owl.ui.tree.OWLModelManagerTree
 
OWLNegativeDataPropertyAssertionFrameSection - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 01-Feb-2007

OWLNegativeDataPropertyAssertionFrameSection(OWLEditorKit, OWLFrame<? extends OWLIndividual>) - Constructor for class org.protege.editor.owl.ui.frame.OWLNegativeDataPropertyAssertionFrameSection
 
OWLNegativeDataPropertyAssertionFrameSectionRow - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 01-Feb-2007

OWLNegativeDataPropertyAssertionFrameSectionRow(OWLEditorKit, OWLFrameSection, OWLOntology, OWLIndividual, OWLNegativeDataPropertyAssertionAxiom) - Constructor for class org.protege.editor.owl.ui.frame.OWLNegativeDataPropertyAssertionFrameSectionRow
 
OWLNegativeObjectPropertyAssertionFrameSection - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 01-Feb-2007

OWLNegativeObjectPropertyAssertionFrameSection(OWLEditorKit, OWLFrame<? extends OWLIndividual>) - Constructor for class org.protege.editor.owl.ui.frame.OWLNegativeObjectPropertyAssertionFrameSection
 
OWLNegativeObjectPropertyAssertionFrameSectionRow - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 01-Feb-2007

OWLNegativeObjectPropertyAssertionFrameSectionRow(OWLEditorKit, OWLFrameSection, OWLOntology, OWLIndividual, OWLNegativeObjectPropertyAssertionAxiom) - Constructor for class org.protege.editor.owl.ui.frame.OWLNegativeObjectPropertyAssertionFrameSectionRow
 
OWLObjectComparator<E extends org.semanticweb.owl.model.OWLObject> - Class in org.protege.editor.owl.ui
Author: Nick Drummond
nick.drummond@cs.manchester.ac.uk
http://www.cs.man.ac.uk/~drummond

The University Of Manchester
Bio Health Informatics Group
Date: Dec 8, 2006

code made available under Mozilla Public License (http://www.mozilla.org/MPL/MPL-1.1.html)
copyright 2006, The University of Manchester

OWLObjectComparator(OWLModelManager) - Constructor for class org.protege.editor.owl.ui.OWLObjectComparator
 
OWLObjectComparatorAdapter<E extends org.semanticweb.owl.model.OWLObject> - Class in org.protege.editor.owl.ui
Author: Nick Drummond
nick.drummond@cs.manchester.ac.uk
http://www.cs.man.ac.uk/~drummond

The University Of Manchester
Bio Health Informatics Group
Date: Dec 8, 2006

code made available under Mozilla Public License (http://www.mozilla.org/MPL/MPL-1.1.html)
copyright 2006, The University of Manchester

OWLObjectComparatorAdapter(Comparator<E>) - Constructor for class org.protege.editor.owl.ui.OWLObjectComparatorAdapter
 
OWLObjectDataFlavor - Class in org.protege.editor.owl.ui.transfer
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 04-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLObjectDragGestureListener - Class in org.protege.editor.owl.ui.transfer
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 04-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLObjectDragGestureListener(OWLEditorKit, JComponent) - Constructor for class org.protege.editor.owl.ui.transfer.OWLObjectDragGestureListener
 
OWLObjectDragSource - Interface in org.protege.editor.owl.ui.transfer
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 15-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLObjectDropTarget - Interface in org.protege.editor.owl.ui.transfer
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 04-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLObjectDropTargetListener - Class in org.protege.editor.owl.ui.table
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 04-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLObjectDropTargetListener(OWLObjectDropTarget) - Constructor for class org.protege.editor.owl.ui.table.OWLObjectDropTargetListener
 
OWLObjectHierarchyCreator<E extends org.semanticweb.owl.model.OWLEntity> - Class in org.protege.editor.owl.ui.action
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 09-May-2007

OWLObjectHierarchyCreator(OWLEditorKit, OWLEntitySetProvider<E>, OWLObjectHierarchyProvider<E>) - Constructor for class org.protege.editor.owl.ui.action.OWLObjectHierarchyCreator
 
OWLObjectHierarchyDeleter<E extends org.semanticweb.owl.model.OWLEntity> - Class in org.protege.editor.owl.ui.action
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 02-May-2007

OWLObjectHierarchyDeleter(OWLEditorKit, OWLObjectHierarchyProvider<E>, OWLEntitySetProvider<E>, String) - Constructor for class org.protege.editor.owl.ui.action.OWLObjectHierarchyDeleter
 
OWLObjectHierarchyDiffTool<N extends org.semanticweb.owl.model.OWLObject> - Class in org.protege.editor.owl.model.hierarchy
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 30-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLObjectHierarchyDiffTool(OWLObjectHierarchyProvider<N>, OWLObjectHierarchyProvider<N>) - Constructor for class org.protege.editor.owl.model.hierarchy.OWLObjectHierarchyDiffTool
 
OWLObjectHierarchyProvider<N extends org.semanticweb.owl.model.OWLObject> - Interface in org.protege.editor.owl.model.hierarchy
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 01-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

An interface to an object that can provide a hierarchy of objects, for example a class, property or individual hierarchy.

OWLObjectHierarchyProviderListener<N extends org.semanticweb.owl.model.OWLObject> - Interface in org.protege.editor.owl.model.hierarchy
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 01-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLObjectList<O extends org.semanticweb.owl.model.OWLObject> - Class in org.protege.editor.owl.ui.list
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 19-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLObjectList(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.list.OWLObjectList
 
OWLObjectListDragGestureListener - Class in org.protege.editor.owl.ui.transfer
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 04-Jul-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLObjectListDragGestureListener(OWLEditorKit, OWLObjectList) - Constructor for class org.protege.editor.owl.ui.transfer.OWLObjectListDragGestureListener
 
OWLObjectListPanel<E extends org.semanticweb.owl.model.OWLObject> - Class in org.protege.editor.owl.ui.list
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 19-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLObjectListPanel(Set<E>, OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.list.OWLObjectListPanel
 
OWLObjectListPanel(String, Set<E>, OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.list.OWLObjectListPanel
 
OWLObjectPopupPage - Class in uk.ac.man.cs.mig.coode.owlviz.ui.popup
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Jun 25, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLObjectPopupPage(String) - Constructor for class uk.ac.man.cs.mig.coode.owlviz.ui.popup.OWLObjectPopupPage
 
OWLObjectPopupProvider - Class in uk.ac.man.cs.mig.coode.owlviz.ui.popup
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 27-Aug-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLObjectPopupProvider(String, OWLEditorKit) - Constructor for class uk.ac.man.cs.mig.coode.owlviz.ui.popup.OWLObjectPopupProvider
 
OWLObjectPropertyAnnotationsViewComponent - Class in org.protege.editor.owl.ui.view
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 04-Feb-2007

OWLObjectPropertyAnnotationsViewComponent() - Constructor for class org.protege.editor.owl.ui.view.OWLObjectPropertyAnnotationsViewComponent
 
OWLObjectPropertyAssertionAxiomFrameSection - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 30-Jan-2007

OWLObjectPropertyAssertionAxiomFrameSection(OWLEditorKit, OWLFrame<OWLIndividual>) - Constructor for class org.protege.editor.owl.ui.frame.OWLObjectPropertyAssertionAxiomFrameSection
 
OWLObjectPropertyAssertionAxiomFrameSectionRow - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 30-Jan-2007

OWLObjectPropertyAssertionAxiomFrameSectionRow(OWLEditorKit, OWLFrameSection, OWLOntology, OWLIndividual, OWLObjectPropertyAssertionAxiom) - Constructor for class org.protege.editor.owl.ui.frame.OWLObjectPropertyAssertionAxiomFrameSectionRow
 
OWLObjectPropertyChainEditor - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 22-Feb-2007

OWLObjectPropertyChainEditor(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.frame.OWLObjectPropertyChainEditor
 
OWLObjectPropertyCharacteristicsViewComponent - Class in org.protege.editor.owl.ui.view
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 29-Jan-2007

OWLObjectPropertyCharacteristicsViewComponent() - Constructor for class org.protege.editor.owl.ui.view.OWLObjectPropertyCharacteristicsViewComponent
 
OWLObjectPropertyDescriptionFrame - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 29-Jan-2007

OWLObjectPropertyDescriptionFrame(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.frame.OWLObjectPropertyDescriptionFrame
 
OWLObjectPropertyDescriptionViewComponent - Class in org.protege.editor.owl.ui.view
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 29-Jan-2007

OWLObjectPropertyDescriptionViewComponent() - Constructor for class org.protege.editor.owl.ui.view.OWLObjectPropertyDescriptionViewComponent
 
OWLObjectPropertyDomainFrameSection - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 29-Jan-2007

OWLObjectPropertyDomainFrameSection(OWLEditorKit, OWLFrame<OWLObjectProperty>) - Constructor for class org.protege.editor.owl.ui.frame.OWLObjectPropertyDomainFrameSection
 
OWLObjectPropertyDomainFrameSectionRow - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 29-Jan-2007

OWLObjectPropertyDomainFrameSectionRow(OWLEditorKit, OWLFrameSection, OWLOntology, OWLObjectProperty, OWLObjectPropertyDomainAxiom) - Constructor for class org.protege.editor.owl.ui.frame.OWLObjectPropertyDomainFrameSectionRow
 
OWLObjectPropertyDomainsAndRangesFrame - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 29-Jan-2007

OWLObjectPropertyDomainsAndRangesFrame(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.frame.OWLObjectPropertyDomainsAndRangesFrame
 
OWLObjectPropertyDomainsAndRangesViewComponent - Class in org.protege.editor.owl.ui.view
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 29-Jan-2007

OWLObjectPropertyDomainsAndRangesViewComponent() - Constructor for class org.protege.editor.owl.ui.view.OWLObjectPropertyDomainsAndRangesViewComponent
 
OWLObjectPropertyEditor - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 16-Feb-2007

OWLObjectPropertyEditor(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.frame.OWLObjectPropertyEditor
 
OWLObjectPropertyHierarchyProvider - Class in org.protege.editor.owl.model.hierarchy
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 23-Jan-2007

OWLObjectPropertyHierarchyProvider(OWLOntologyManager) - Constructor for class org.protege.editor.owl.model.hierarchy.OWLObjectPropertyHierarchyProvider
 
OWLObjectPropertyHierarchyViewComponent - Class in org.protege.editor.owl.ui.view
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 23-Jan-2007

OWLObjectPropertyHierarchyViewComponent() - Constructor for class org.protege.editor.owl.ui.view.OWLObjectPropertyHierarchyViewComponent
 
OWLObjectPropertyIndividualPair - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 15-Feb-2007

A utility class which binds an object property expression and individual together.

OWLObjectPropertyIndividualPair(OWLObjectPropertyExpression, OWLIndividual) - Constructor for class org.protege.editor.owl.ui.frame.OWLObjectPropertyIndividualPair
 
OWLObjectPropertyIndividualPairEditor - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 22-Feb-2007

OWLObjectPropertyIndividualPairEditor(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.frame.OWLObjectPropertyIndividualPairEditor
 
OWLObjectPropertyRangeFrameSection - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 29-Jan-2007

OWLObjectPropertyRangeFrameSection(OWLEditorKit, OWLFrame<? extends OWLObjectProperty>) - Constructor for class org.protege.editor.owl.ui.frame.OWLObjectPropertyRangeFrameSection
 
OWLObjectPropertyRangeFrameSectionRow - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 29-Jan-2007

OWLObjectPropertyRangeFrameSectionRow(OWLEditorKit, OWLFrameSection, OWLOntology, OWLObjectProperty, OWLObjectPropertyRangeAxiom) - Constructor for class org.protege.editor.owl.ui.frame.OWLObjectPropertyRangeFrameSectionRow
 
OWLObjectPropertySelectorPanel - Class in org.protege.editor.owl.ui.selector
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 17-May-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLObjectPropertySelectorPanel(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.selector.OWLObjectPropertySelectorPanel
 
OWLObjectPropertySelectorPanel(OWLEditorKit, boolean) - Constructor for class org.protege.editor.owl.ui.selector.OWLObjectPropertySelectorPanel
 
OWLObjectPropertySelectorPanel(OWLEditorKit, boolean, OWLObjectHierarchyProvider<OWLObjectProperty>) - Constructor for class org.protege.editor.owl.ui.selector.OWLObjectPropertySelectorPanel
 
OWLObjectPropertySetEditor - Class in org.protege.editor.owl.ui.frame.editor
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Apr 6, 2009

OWLObjectPropertySetEditor(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.frame.editor.OWLObjectPropertySetEditor
 
OWLObjectPropertyTreeDropHandler - Class in org.protege.editor.owl.ui.view
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 23-Jan-2007

OWLObjectPropertyTreeDropHandler(OWLModelManager) - Constructor for class org.protege.editor.owl.ui.view.OWLObjectPropertyTreeDropHandler
 
OWLObjectPropertyUsageViewComponent - Class in org.protege.editor.owl.ui.view
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 22-Feb-2007

OWLObjectPropertyUsageViewComponent() - Constructor for class org.protege.editor.owl.ui.view.OWLObjectPropertyUsageViewComponent
 
OWLObjectRenderer - Interface in org.protege.editor.owl.ui.renderer
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Apr 2, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLObjectRendererDLSyntax - Class in org.protege.editor.owl.ui.renderer
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 24-Jan-2007

OWLObjectRendererDLSyntax(OWLModelManager) - Constructor for class org.protege.editor.owl.ui.renderer.OWLObjectRendererDLSyntax
 
OWLObjectRendererImpl - Class in org.protege.editor.owl.ui.renderer
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Apr 2, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

A renderer that renders objects using the Manchester OWL Syntax.

OWLObjectRendererImpl(OWLModelManager) - Constructor for class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
OWLObjectRenderingCache - Class in org.protege.editor.owl.model.cache
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Jun 27, 2008

OWLObjectRenderingCache(OWLModelManager) - Constructor for class org.protege.editor.owl.model.cache.OWLObjectRenderingCache
 
OWLObjectRestrictionCreatorPanel - Class in org.protege.editor.owl.ui.editor
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Dec 23, 2008

OWLObjectRestrictionCreatorPanel() - Constructor for class org.protege.editor.owl.ui.editor.OWLObjectRestrictionCreatorPanel
 
OWLObjectRestrictionCreatorPanel - Class in org.protege.editor.owl.ui.frame
Deprecated. use org.protege.editor.owl.ui.editor.OWLObjectRestrictionCreatorPanel
OWLObjectRestrictionCreatorPanel(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.frame.OWLObjectRestrictionCreatorPanel
Deprecated.  
OWLObjectSelector<O> - Interface in org.protege.editor.owl.ui.selector
Author: Matthew Horridge
The University Of Manchester
Information Management Group
Date: 21-Sep-2008

OWLObjectTree<N extends org.semanticweb.owl.model.OWLObject> - Class in org.protege.editor.owl.ui.tree
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 01-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLObjectTree(OWLEditorKit, OWLObjectHierarchyProvider<N>) - Constructor for class org.protege.editor.owl.ui.tree.OWLObjectTree
 
OWLObjectTree(OWLEditorKit, OWLObjectHierarchyProvider<N>, Comparator<? super N>) - Constructor for class org.protege.editor.owl.ui.tree.OWLObjectTree
 
OWLObjectTree(OWLEditorKit, OWLObjectHierarchyProvider<N>, Set<N>, Comparator<? super N>) - Constructor for class org.protege.editor.owl.ui.tree.OWLObjectTree
 
OWLObjectTreeCellRenderer - Class in org.protege.editor.owl.ui.tree
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 01-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLObjectTreeCellRenderer(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.tree.OWLObjectTreeCellRenderer
 
OWLObjectTreeDragGestureListener - Class in org.protege.editor.owl.ui.transfer
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 04-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLObjectTreeDragGestureListener(OWLEditorKit, OWLObjectTree) - Constructor for class org.protege.editor.owl.ui.transfer.OWLObjectTreeDragGestureListener
 
OWLObjectTreeDropTargetListener - Class in org.protege.editor.owl.ui.transfer
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 04-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLObjectTreeDropTargetListener(OWLObjectTree) - Constructor for class org.protege.editor.owl.ui.transfer.OWLObjectTreeDropTargetListener
 
OWLObjectTreeNode<N extends org.semanticweb.owl.model.OWLObject> - Class in org.protege.editor.owl.ui.tree
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 01-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLObjectTreeNode(Object, OWLObjectTree) - Constructor for class org.protege.editor.owl.ui.tree.OWLObjectTreeNode
 
OWLObjectTreeNode(OWLObjectTree) - Constructor for class org.protege.editor.owl.ui.tree.OWLObjectTreeNode
 
OWLObjectTreeRootNode<N extends org.semanticweb.owl.model.OWLObject> - Class in org.protege.editor.owl.ui.tree
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 01-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLObjectTreeRootNode(OWLObjectTree<N>, Set<N>) - Constructor for class org.protege.editor.owl.ui.tree.OWLObjectTreeRootNode
 
OWLOntologyAnnotationAxiomFrameSection - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 04-Feb-2007

OWLOntologyAnnotationAxiomFrameSection(OWLEditorKit, OWLFrame<? extends OWLOntology>) - Constructor for class org.protege.editor.owl.ui.frame.OWLOntologyAnnotationAxiomFrameSection
 
OWLOntologyAnnotationAxiomFrameSectionRow - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 04-Feb-2007

OWLOntologyAnnotationAxiomFrameSectionRow(OWLEditorKit, OWLFrameSection, OWLOntology, OWLOntology, OWLOntologyAnnotationAxiom) - Constructor for class org.protege.editor.owl.ui.frame.OWLOntologyAnnotationAxiomFrameSectionRow
 
OWLOntologyAnnotationFrame - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 04-Feb-2007

OWLOntologyAnnotationFrame(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.frame.OWLOntologyAnnotationFrame
 
OWLOntologyAnnotationViewComponent - Class in org.protege.editor.owl.ui.view
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 04-Feb-2007

OWLOntologyAnnotationViewComponent() - Constructor for class org.protege.editor.owl.ui.view.OWLOntologyAnnotationViewComponent
 
OWLOntologyCellRenderer - Class in org.protege.editor.owl.ui.renderer
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 13-Sep-2007

OWLOntologyCellRenderer(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.renderer.OWLOntologyCellRenderer
 
OWLOntologyDisplayPanel - Class in org.protege.editor.owl.ui
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 29-Oct-2007

A panel that displays information about an ontology.
OWLOntologyDisplayPanel(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.OWLOntologyDisplayPanel
 
OWLOntologyFrame - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 29-Oct-2007

OWLOntologyFrame(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.frame.OWLOntologyFrame
 
OWLOntologyHierarchyProvider - Class in org.protege.editor.owl.model.hierarchy
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 28-Oct-2007

OWLOntologyHierarchyProvider(OWLModelManager) - Constructor for class org.protege.editor.owl.model.hierarchy.OWLOntologyHierarchyProvider
 
OWLOntologyImportsGraphModel - Class in uk.ac.man.cs.mig.coode.owlviz.model
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 03-Oct-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLOntologyImportsGraphModel(OWLModelManager) - Constructor for class uk.ac.man.cs.mig.coode.owlviz.model.OWLOntologyImportsGraphModel
 
OWLOntologyObjectHierarchyProvider<N extends org.semanticweb.owl.model.OWLObject> - Interface in org.protege.editor.owl.model.hierarchy
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 01-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLOntologySelectorPanel - Class in org.protege.editor.owl.ui.selector
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 22-Sep-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLOntologySelectorPanel(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.selector.OWLOntologySelectorPanel
 
OWLOntologySelectorPanel(OWLEditorKit, Set<OWLOntology>) - Constructor for class org.protege.editor.owl.ui.selector.OWLOntologySelectorPanel
 
OWLOntologySelectorPanel2 - Class in org.protege.editor.owl.ui.selector
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Sep 30, 2008

OWLOntologySelectorPanel2(OWLEditorKit, Set<OWLOntology>) - Constructor for class org.protege.editor.owl.ui.selector.OWLOntologySelectorPanel2
 
OWLParseException - Exception in org.protege.editor.owl.model.parser
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 19-Jan-2007

OWLParseException(Throwable) - Constructor for exception org.protege.editor.owl.model.parser.OWLParseException
 
OWLParseException(String) - Constructor for exception org.protege.editor.owl.model.parser.OWLParseException
 
OWLParseException(String, Throwable) - Constructor for exception org.protege.editor.owl.model.parser.OWLParseException
 
OWLPreferencesPanel - Class in org.protege.editor.owl.ui.preferences
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 08-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLPreferencesPanel() - Constructor for class org.protege.editor.owl.ui.preferences.OWLPreferencesPanel
 
OWLPropertyChainAxiomFrameSection - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 29-Jan-2007

OWLPropertyChainAxiomFrameSection(OWLEditorKit, OWLFrame<? extends OWLObjectProperty>) - Constructor for class org.protege.editor.owl.ui.frame.OWLPropertyChainAxiomFrameSection
 
OWLPropertyChainAxiomFrameSectionRow - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 29-Jan-2007

OWLPropertyChainAxiomFrameSectionRow(OWLEditorKit, OWLFrameSection, OWLOntology, OWLObjectProperty, OWLObjectPropertyChainSubPropertyAxiom) - Constructor for class org.protege.editor.owl.ui.frame.OWLPropertyChainAxiomFrameSectionRow
 
OWLPropertyChainChecker - Class in org.protege.editor.owl.ui.clsdescriptioneditor
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 22-Feb-2007

OWLPropertyChainChecker(OWLModelManager) - Constructor for class org.protege.editor.owl.ui.clsdescriptioneditor.OWLPropertyChainChecker
 
OWLPropertyTreeDropHandler<N extends org.semanticweb.owl.model.OWLPropertyExpression> - Class in org.protege.editor.owl.ui.view
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 06-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLPropertyTreeDropHandler(OWLModelManager) - Constructor for class org.protege.editor.owl.ui.view.OWLPropertyTreeDropHandler
 
OWLReasonerExceptionHandler - Interface in org.protege.editor.owl.model.inference
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 26-Nov-2007

OWLReasonerManager - Interface in org.protege.editor.owl.model.inference
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 19-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

The reasoner manager manages a "global" reaoner instance, but also provides the ability to create new instances of the currently selected reasoner.

OWLReasonerManagerImpl - Class in org.protege.editor.owl.model.inference
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 19-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLReasonerManagerImpl(OWLModelManager) - Constructor for class org.protege.editor.owl.model.inference.OWLReasonerManagerImpl
 
OWLReasonerUtils - Class in org.protege.editor.owl.model.inference
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Nov 18, 2008

OWLReasonerUtils(OWLReasoner) - Constructor for class org.protege.editor.owl.model.inference.OWLReasonerUtils
 
OWLRendererPreferences - Class in org.protege.editor.owl.ui.renderer
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 19-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLSameIndividualsAxiomFrameSection - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 29-Jan-2007

OWLSameIndividualsAxiomFrameSection(OWLEditorKit, OWLFrame<? extends OWLIndividual>) - Constructor for class org.protege.editor.owl.ui.frame.OWLSameIndividualsAxiomFrameSection
 
OWLSameIndividualsAxiomFrameSectionRow - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 29-Jan-2007

OWLSameIndividualsAxiomFrameSectionRow(OWLEditorKit, OWLFrameSection, OWLOntology, OWLIndividual, OWLSameIndividualsAxiom) - Constructor for class org.protege.editor.owl.ui.frame.OWLSameIndividualsAxiomFrameSectionRow
 
OWLSelectionHistoryManager - Interface in org.protege.editor.owl.model.selection
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 07-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLSelectionHistoryManagerImpl - Class in org.protege.editor.owl.model.selection
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 07-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLSelectionHistoryManagerImpl(OWLSelectionModel) - Constructor for class org.protege.editor.owl.model.selection.OWLSelectionHistoryManagerImpl
 
OWLSelectionModel - Interface in org.protege.editor.owl.model.selection
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Mar 27, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

An OWLSelectionModel keeps track of a list of OWLObjects.

OWLSelectionModelAdapter - Class in org.protege.editor.owl.model.selection
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 19-Sep-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLSelectionModelAdapter() - Constructor for class org.protege.editor.owl.model.selection.OWLSelectionModelAdapter
 
OWLSelectionModelImpl - Class in org.protege.editor.owl.model.selection
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Mar 21, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLSelectionModelImpl() - Constructor for class org.protege.editor.owl.model.selection.OWLSelectionModelImpl
 
OWLSelectionModelListener - Interface in org.protege.editor.owl.model.selection
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Mar 21, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLSelectionViewAction - Class in org.protege.editor.owl.ui.view
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 25-May-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLSelectionViewAction(String, Icon) - Constructor for class org.protege.editor.owl.ui.view.OWLSelectionViewAction
 
OWLSubClassAxiomFrameSection - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 19-Jan-2007

OWLSubClassAxiomFrameSection(OWLEditorKit, OWLFrame<OWLClass>) - Constructor for class org.protege.editor.owl.ui.frame.OWLSubClassAxiomFrameSection
 
OWLSubClassAxiomFrameSectionRow - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 19-Jan-2007

OWLSubClassAxiomFrameSectionRow(OWLEditorKit, OWLFrameSection, OWLOntology, OWLDescription, OWLSubClassAxiom) - Constructor for class org.protege.editor.owl.ui.frame.OWLSubClassAxiomFrameSectionRow
 
OWLSubDataPropertyAxiomSuperPropertyFrameSection - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 16-Feb-2007

OWLSubDataPropertyAxiomSuperPropertyFrameSection(OWLEditorKit, OWLFrame<? extends OWLDataProperty>) - Constructor for class org.protege.editor.owl.ui.frame.OWLSubDataPropertyAxiomSuperPropertyFrameSection
 
OWLSubDataPropertyAxiomSuperPropertyFrameSectionRow - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 16-Feb-2007

OWLSubDataPropertyAxiomSuperPropertyFrameSectionRow(OWLEditorKit, OWLFrameSection, OWLOntology, OWLDataProperty, OWLDataSubPropertyAxiom) - Constructor for class org.protege.editor.owl.ui.frame.OWLSubDataPropertyAxiomSuperPropertyFrameSectionRow
 
OWLSubObjectPropertyAxiomSuperPropertyFrameSection - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 29-Jan-2007

OWLSubObjectPropertyAxiomSuperPropertyFrameSection(OWLEditorKit, OWLFrame<? extends OWLObjectProperty>) - Constructor for class org.protege.editor.owl.ui.frame.OWLSubObjectPropertyAxiomSuperPropertyFrameSection
 
OWLSubObjectPropertyAxiomSuperPropertyFrameSectionRow - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 29-Jan-2007

OWLSubObjectPropertyAxiomSuperPropertyFrameSectionRow(OWLEditorKit, OWLFrameSection, OWLOntology, OWLObjectProperty, OWLObjectSubPropertyAxiom) - Constructor for class org.protege.editor.owl.ui.frame.OWLSubObjectPropertyAxiomSuperPropertyFrameSectionRow
 
OWLSystemColors - Class in org.protege.editor.owl.ui.renderer
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 29-May-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLSystemColors() - Constructor for class org.protege.editor.owl.ui.renderer.OWLSystemColors
 
OWLTreeDragAndDropHandler<N> - Interface in org.protege.editor.owl.ui.tree
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 04-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLTreePreferences - Class in org.protege.editor.owl.ui.tree
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 18-Oct-2007

OWLTreePreferences() - Constructor for class org.protege.editor.owl.ui.tree.OWLTreePreferences
 
OWLTreePreferencesPanel - Class in org.protege.editor.owl.ui.tree
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 18-Oct-2007

OWLTreePreferencesPanel() - Constructor for class org.protege.editor.owl.ui.tree.OWLTreePreferencesPanel
 
OWLUIActionStrategy - Interface in org.protege.editor.owl.ui.action
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Apr 24, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLViewAction - Class in org.protege.editor.owl.ui
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Apr 3, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLViewAction() - Constructor for class org.protege.editor.owl.ui.OWLViewAction
 
OWLVIZ_ICON - Static variable in class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizIcons
 
OWLVizAxiomGraphModel - Class in uk.ac.man.cs.mig.coode.owlviz.model
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 06-May-2007

OWLVizAxiomGraphModel(Set<OWLAxiom>) - Constructor for class uk.ac.man.cs.mig.coode.owlviz.model.OWLVizAxiomGraphModel
This constructor initializes all maps and sets and invokes the method addAndClearAxioms with the set of axioms as paramter.
OWLVizAxiomView - Class in uk.ac.man.cs.mig.coode.owlviz.ui
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 06-May-2007

OWLVizAxiomView() - Constructor for class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizAxiomView
 
OWLVizGraphPanel - Class in uk.ac.man.cs.mig.coode.owlviz.ui
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Jul 7, 2005

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLVizGraphPanel(OWLVizViewI, OWLEditorKit, GraphModel) - Constructor for class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizGraphPanel
 
OWLVizGraphPanel(String, OWLVizViewI, OWLEditorKit, GraphModel) - Constructor for class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizGraphPanel
 
OWLVizIcons - Class in uk.ac.man.cs.mig.coode.owlviz.ui
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Feb 24, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLVizIcons() - Constructor for class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizIcons
 
OWLVizImportsViewComponent - Class in uk.ac.man.cs.mig.coode.owlviz.ui
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 03-Oct-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLVizImportsViewComponent() - Constructor for class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizImportsViewComponent
 
OWLVizPreferences - Class in uk.ac.man.cs.mig.coode.owlviz.ui
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Dec 10, 2008

OWLVizPreferences() - Constructor for class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizPreferences
 
OWLVizPreferencesPane - Class in uk.ac.man.cs.mig.coode.owlviz.ui.options
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Dec 10, 2008

OWLVizPreferencesPane() - Constructor for class uk.ac.man.cs.mig.coode.owlviz.ui.options.OWLVizPreferencesPane
 
OWLVizProperties - Class in uk.ac.man.cs.mig.coode.owlviz.ui.options
Deprecated.  
OWLVizSelectionListener - Interface in uk.ac.man.cs.mig.coode.owlviz.ui
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Jul 7, 2005

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLVizSelectionModel - Class in uk.ac.man.cs.mig.coode.owlviz.ui
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Jul 7, 2005

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLVizSelectionModel() - Constructor for class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizSelectionModel
 
OWLVizView - Class in uk.ac.man.cs.mig.coode.owlviz.ui
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Feb 5, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLVizView() - Constructor for class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizView
 
OWLVizViewI - Interface in uk.ac.man.cs.mig.coode.owlviz.ui
 
OWLVizViewOptions - Class in uk.ac.man.cs.mig.coode.owlviz.ui.options
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Sep 10, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLVizViewOptions() - Constructor for class uk.ac.man.cs.mig.coode.owlviz.ui.options.OWLVizViewOptions
 
OWLWorkspace - Class in org.protege.editor.owl.model
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Mar 17, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLWorkspace() - Constructor for class org.protege.editor.owl.model.OWLWorkspace
 
OWLWorkspaceTab - Class in org.protege.editor.owl.ui
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 26-May-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLWorkspaceTab() - Constructor for class org.protege.editor.owl.ui.OWLWorkspaceTab
 
OWLWorkspaceViewsTab - Class in org.protege.editor.owl.ui
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 16-May-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

OWLWorkspaceViewsTab() - Constructor for class org.protege.editor.owl.ui.OWLWorkspaceViewsTab
 
OWLXMLRenderingViewComponent - Class in org.protege.editor.owl.ui.view
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 20-Mar-2007

OWLXMLRenderingViewComponent() - Constructor for class org.protege.editor.owl.ui.view.OWLXMLRenderingViewComponent
 

P

pack(JTable, boolean, boolean, int) - Static method in class org.protege.editor.core.ui.util.TableUtils
 
pageChanged(WizardEvent) - Method in interface uk.ac.man.cs.mig.util.wizard.WizardEventListener
 
pageSelected(Wizard) - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.exportwizard.SelectFormatPage
When this WizardPage is selected, we need to update the state of the controls to repflect the data that the page is displaying
pageSelected(Wizard) - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.exportwizard.SpecifyFileNamePage
Called when the page is displayed.
pageSelected(Wizard) - Method in class uk.ac.man.cs.mig.util.wizard.WizardPage
Called when the page is displayed.
paint(Graphics) - Method in class org.protege.editor.core.ui.split.ViewSplitPaneDivider
Paints the divider.
paint(Graphics, JComponent) - Method in class org.protege.editor.core.ui.tabbedpane.ViewTabbedPaneUI
 
paint(Graphics, JComponent) - Method in class org.protege.editor.core.ui.view.button.ViewButtonUI
 
paintBorder(Component, Graphics, int, int, int, int) - Method in class org.protege.editor.owl.ui.framelist.OWLFrameListInferredSectionRowBorder
Paints the border for the specified component with the specified position and size.
paintButtonContent(Graphics2D) - Method in class org.protege.editor.core.ui.list.MListAddButton
 
paintButtonContent(Graphics2D) - Method in class org.protege.editor.core.ui.list.MListButton
Paints the button content.
paintButtonContent(Graphics2D) - Method in class org.protege.editor.core.ui.list.MListDeleteButton
 
paintButtonContent(Graphics2D) - Method in class org.protege.editor.core.ui.list.MListEditButton
 
paintButtonContent(Graphics2D) - Method in class org.protege.editor.owl.ui.framelist.AxiomAnnotationButton
 
paintButtonContent(Graphics2D) - Method in class org.protege.editor.owl.ui.framelist.ExplainButton
 
paintButtonPressed(Graphics, AbstractButton) - Method in class org.protege.editor.core.ui.view.button.ViewButtonUI
 
paintComponent(Graphics) - Method in class org.protege.editor.core.ui.list.MList
 
paintComponent(Graphics) - Method in class org.protege.editor.core.ui.view.ViewBanner
Calls the UI delegate's paint method, if the UI delegate is non-null.
paintComponent(Graphics) - Method in class org.protege.editor.core.ui.wizard.AbstractWizardPanel
 
paintComponent(Graphics) - Method in class org.protege.editor.owl.ui.clsdescriptioneditor.ExpressionEditor
 
paintComponent(Graphics) - Method in class org.protege.editor.owl.ui.metrics.DLNamePanel
 
paintComponent(Graphics) - Method in class org.protege.editor.owl.ui.tree.OWLLinkedObjectTree
 
paintComponent(Graphics) - Method in class org.protege.editor.owl.ui.tree.OWLObjectTree
 
paintComponent(Graphics) - Method in class org.protege.editor.owl.ui.usage.UsageTree
 
paintComponent(Graphics) - Method in class uk.ac.man.cs.mig.util.graph.ui.impl.DefaultGraphView
 
paintComponent(Graphics) - Method in class uk.ac.man.cs.mig.util.graph.ui.impl.DefaultThumbnailView
 
paintContentBorder(Graphics, int, int) - Method in class org.protege.editor.core.ui.tabbedpane.ViewTabbedPaneUI
 
paintContentBorderBottomEdge(Graphics, int, int, int, int, int, int) - Method in class org.protege.editor.core.ui.tabbedpane.ViewTabbedPaneUI
 
paintContentBorderLeftEdge(Graphics, int, int, int, int, int, int) - Method in class org.protege.editor.core.ui.tabbedpane.ViewTabbedPaneUI
 
paintContentBorderRightEdge(Graphics, int, int, int, int, int, int) - Method in class org.protege.editor.core.ui.tabbedpane.ViewTabbedPaneUI
 
paintContentBorderTopEdge(Graphics, int, int, int, int, int, int) - Method in class org.protege.editor.core.ui.tabbedpane.ViewTabbedPaneUI
 
paintFocusIndicator(Graphics, int, Rectangle[], int, Rectangle, Rectangle, boolean) - Method in class org.protege.editor.core.ui.tabbedpane.ViewTabbedPaneUI
 
paintTab(Graphics, int, Rectangle[], int, Rectangle, Rectangle) - Method in class org.protege.editor.core.ui.tabbedpane.ViewTabbedPaneUI
 
paintTabArea(Graphics, int, int) - Method in class org.protege.editor.core.ui.tabbedpane.ViewTabbedPaneUI
Paints the tabs in the tab area.
paintTabBackground(Graphics, int, int, int, int, int, int, boolean) - Method in class org.protege.editor.core.ui.tabbedpane.ViewTabbedPaneUI
 
paintTabBorder(Graphics, int, int, int, int, int, int, boolean) - Method in class org.protege.editor.core.ui.tabbedpane.ViewTabbedPaneUI
this function draws the border around each tab note that this function does now draw the background of the tab.
paintText(Graphics, int, Font, FontMetrics, int, String, Rectangle, boolean) - Method in class org.protege.editor.core.ui.tabbedpane.ViewTabbedPaneUI
 
parentAdded(GraphModelEvent) - Method in interface uk.ac.man.cs.mig.util.graph.event.GraphModelListener
 
parentObjectAdded(VisualisedObjectManagerEvent) - Method in interface uk.ac.man.cs.mig.util.graph.event.VisualisedObjectManagerListener
 
parentObjectRemoved(VisualisedObjectManagerEvent) - Method in interface uk.ac.man.cs.mig.util.graph.event.VisualisedObjectManagerListener
 
parentRemoved(GraphModelEvent) - Method in interface uk.ac.man.cs.mig.util.graph.event.GraphModelListener
 
parse(Reader) - Method in class org.protege.editor.owl.model.hierarchy.tabbed.TabIndentedHierarchyParser
 
parse(DotParameterSetter, InputStream) - Static method in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.DotParser
 
ParseErrorPanel<O extends Throwable> - Class in org.protege.editor.owl.ui.error
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Dec 11, 2008

ParseErrorPanel(ErrorExplainer.ErrorExplanation<O>, URI, SourcePanel) - Constructor for class org.protege.editor.owl.ui.error.ParseErrorPanel
 
ParseException - Exception in uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser
This exception is thrown when parse errors are encountered.
ParseException(Token, int[][], String[]) - Constructor for exception uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.ParseException
This constructor is used by the method "generateParseException" in the generated parser.
ParseException() - Constructor for exception uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.ParseException
The following constructors are for use by you for whatever purpose you can think of.
ParseException(String) - Constructor for exception uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.ParseException
 
parsePoint(String) - Method in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.DotParameterSetter
Parses a point in the form of "x,y".
parseRect(String) - Method in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.DotParameterSetter
Parses a String that describes a Rectangle
ParserUtil - Class in org.protege.editor.owl.model.parser
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: May 8, 2008

ParserUtil() - Constructor for class org.protege.editor.owl.model.parser.ParserUtil
 
Pasteable - Interface in org.protege.editor.owl.ui.view
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 07-Oct-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

PasteAction - Class in org.protege.editor.owl.ui.action
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 07-Oct-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

PasteAction() - Constructor for class org.protege.editor.owl.ui.action.PasteAction
 
pasteObjects(List<OWLObject>) - Method in class org.protege.editor.owl.ui.framelist.OWLFrameList2
 
pasteObjects(List<OWLObject>) - Method in interface org.protege.editor.owl.ui.view.Pasteable
 
Path<X> - Class in org.protege.editor.owl.model.hierarchy.roots
 
Path(X) - Constructor for class org.protege.editor.owl.model.hierarchy.roots.Path
 
Path(Path<X>, X) - Constructor for class org.protege.editor.owl.model.hierarchy.roots.Path
 
pathTo(int, int, int, int, int, int) - Method in interface uk.ac.man.cs.mig.util.graph.graph.Edge
Extends the Edge using the following control points to form a Bezier curve extension to the end point (x3, y3).
pathTo(int, int) - Method in interface uk.ac.man.cs.mig.util.graph.graph.Edge
Extends the Edge to the specified location using a straight line.
pathTo(int, int, int, int, int, int) - Method in class uk.ac.man.cs.mig.util.graph.graph.impl.DefaultEdge
Extends the Edge using the following control points to form a Bezier curve extension to the end point (x3, y3).
pathTo(int, int) - Method in class uk.ac.man.cs.mig.util.graph.graph.impl.DefaultEdge
Extends the Edge to the specified location using a straight line.
performAction() - Method in interface org.protege.editor.owl.ui.action.OWLUIActionStrategy
 
performAutoUpdate() - Method in class org.protege.editor.core.update.PluginManager
 
performCheckPlugins() - Method in class org.protege.editor.core.update.PluginManager
 
performConversion() - Method in class org.protege.editor.owl.model.refactor.ontology.ConvertEntityURIsToIdentifierPattern
 
performDeletion() - Method in class org.protege.editor.owl.ui.action.OWLObjectHierarchyDeleter
 
performExtraInitialisation() - Method in class org.protege.editor.owl.ui.clshierarchy.AbstractOWLClassHierarchyViewComponent
 
performExtraInitialisation() - Method in class org.protege.editor.owl.ui.clshierarchy.AbstractSuperClassHierarchyViewComponent
 
performExtraInitialisation() - Method in class org.protege.editor.owl.ui.clshierarchy.InferredOWLClassHierarchyViewComponent
 
performExtraInitialisation() - Method in class org.protege.editor.owl.ui.clshierarchy.InferredSuperClassHierarchyViewComponent
 
performExtraInitialisation() - Method in class org.protege.editor.owl.ui.clshierarchy.ToldOWLClassHierarchyViewComponent
 
performExtraInitialisation() - Method in class org.protege.editor.owl.ui.view.AbstractOWLPropertyHierarchyViewComponent
 
performExtraInitialisation() - Method in class org.protege.editor.owl.ui.view.InferredObjectPropertyHierarchyViewComponent
 
performExtraInitialisation() - Method in class org.protege.editor.owl.ui.view.OWLDataPropertyHierarchyViewComponent
 
performExtraInitialisation() - Method in class org.protege.editor.owl.ui.view.OWLObjectPropertyHierarchyViewComponent
 
performImportSetup(OWLEditorKit) - Method in interface org.protege.editor.owl.ui.ontology.imports.wizard.ImportParameters
 
performMigration() - Method in class org.protege.editor.owl.model.refactor.ontology.OntologyMigrator
 
persist() - Method in class org.protege.editor.core.ui.view.View
 
PhysicalLocationPanel - Class in org.protege.editor.owl.ui.ontology.location
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 02-Sep-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

PhysicalLocationPanel(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.ontology.location.PhysicalLocationPanel
 
PhysicalLocationPanel(OWLEditorKit, Set<OWLOntology>) - Constructor for class org.protege.editor.owl.ui.ontology.location.PhysicalLocationPanel
 
PhysicalLocationPanel - Class in org.protege.editor.owl.ui.ontology.wizard.create
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 01-Sep-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

PhysicalLocationPanel(EditorKit) - Constructor for class org.protege.editor.owl.ui.ontology.wizard.create.PhysicalLocationPanel
 
PhysicalLocationTableModel - Class in org.protege.editor.owl.ui.ontology.location
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 02-Sep-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

PhysicalLocationTableModel(OWLModelManager) - Constructor for class org.protege.editor.owl.ui.ontology.location.PhysicalLocationTableModel
 
physicalURI - Variable in class org.protege.editor.owl.OWLModelManagerDescriptor
 
pickAnnotationURI() - Method in class org.protege.editor.owl.ui.UIHelper
 
pickOWLClass() - Method in class org.protege.editor.owl.ui.UIHelper
 
pickOWLDataProperty() - Method in class org.protege.editor.owl.ui.UIHelper
 
pickOWLDataType() - Method in class org.protege.editor.owl.ui.UIHelper
 
pickOWLEntity(String, Set<E>, OWLModelManager) - Method in class org.protege.editor.owl.ui.UIHelper
 
pickOWLIndividual() - Method in class org.protege.editor.owl.ui.UIHelper
 
pickOWLObjectProperty() - Method in class org.protege.editor.owl.ui.UIHelper
 
pickOWLOntologies() - Method in class org.protege.editor.owl.ui.UIHelper
 
pickOWLOntology() - Method in class org.protege.editor.owl.ui.UIHelper
 
PickRootClassPanel - Class in org.protege.editor.owl.ui.hierarchy.creation
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 17-Jul-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

PickRootClassPanel(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.hierarchy.creation.PickRootClassPanel
 
PLASTIC_3D_LAF - Static variable in class org.protege.editor.core.ProtegeProperties
 
PLASTIC_LAF_NAME - Static variable in class org.protege.editor.core.ProtegeProperties
 
PlatformArguments - Class in org.protege.editor.core.platform
 
PlatformArguments() - Constructor for class org.protege.editor.core.platform.PlatformArguments
 
PLUGIN_REGISTRY_KEY - Static variable in class org.protege.editor.core.update.PluginManager
 
PLUGIN_XML_VALUE - Static variable in class org.protege.editor.core.plugin.PluginProperties
 
PluginExtensionFilter - Class in org.protege.editor.core.plugin
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Mar 17, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

A utility class to obtain a set of plugin Extensions that conform to some kind of structure.

PluginExtensionFilter(String, String, PluginExtensionMatcher) - Constructor for class org.protege.editor.core.plugin.PluginExtensionFilter
Creates a PluginExtensionFilter that can be used to obtain a set of Extensions that extend a given extension point on a specific plugin.
PluginExtensionMatcher - Interface in org.protege.editor.core.plugin
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Mar 17, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

This interface is used by the plugin utilities to filter out certain types of plugin extensions.

PluginInfo - Class in org.protege.editor.core.update
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 18-Jun-2007

Encapsulates information about a new version of a plugin.

PluginInfo(String, Version, URL) - Constructor for class org.protege.editor.core.update.PluginInfo
 
PluginInfoDocument - Class in org.protege.editor.core.update
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 25-Aug-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

PluginInfoDocument(URL) - Constructor for class org.protege.editor.core.update.PluginInfoDocument
 
PluginInfoTable - Class in org.protege.editor.core.ui.about
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 01-Sep-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

PluginInfoTable() - Constructor for class org.protege.editor.core.ui.about.PluginInfoTable
 
PluginInfoTableModel - Class in org.protege.editor.core.ui.about
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 01-Sep-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

PluginInfoTableModel() - Constructor for class org.protege.editor.core.ui.about.PluginInfoTableModel
 
PluginInfoTableModel.Columns - Enum in org.protege.editor.core.ui.about
 
PluginInstaller - Class in org.protege.editor.core.update
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 18-Jun-2007

PluginInstaller(List<PluginInfo>) - Constructor for class org.protege.editor.core.update.PluginInstaller
 
PluginManager - Class in org.protege.editor.core.update
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 25-Aug-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

PluginPanel - Class in org.protege.editor.core.update
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 18-Jun-2007

PluginPanel(Map<String, DownloadsProvider>) - Constructor for class org.protege.editor.core.update.PluginPanel
 
PluginParameterExtensionMatcher - Class in org.protege.editor.core.plugin
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Mar 22, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

An implementation of PluginExtensionMatcher that returns the extensions that match a given set of parameters.

PluginParameterExtensionMatcher() - Constructor for class org.protege.editor.core.plugin.PluginParameterExtensionMatcher
 
PluginParameterExtensionMatcher(Map<String, String>) - Constructor for class org.protege.editor.core.plugin.PluginParameterExtensionMatcher
Initialises the match with the parameter values that are required to match.
PluginPreferencesPanel - Class in org.protege.editor.core.update
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 18-Jun-2007

PluginPreferencesPanel() - Constructor for class org.protege.editor.core.update.PluginPreferencesPanel
 
PluginProperties - Class in org.protege.editor.core.plugin
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Mar 22, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

PluginProperties() - Constructor for class org.protege.editor.core.plugin.PluginProperties
 
PluginTable - Class in org.protege.editor.core.update
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Nov 5, 2008

PluginTable(DownloadsProvider) - Constructor for class org.protege.editor.core.update.PluginTable
 
PluginUtilities - Class in org.protege.editor.core.plugin
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Mar 17, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

PNGExportFormat - Class in uk.ac.man.cs.mig.util.graph.export.impl
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Feb 20, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

PNGExportFormat() - Constructor for class uk.ac.man.cs.mig.util.graph.export.impl.PNGExportFormat
 
pointFromZoomedPoint(Point) - Method in class uk.ac.man.cs.mig.util.graph.ui.impl.DefaultGraphView
Converts a Point from a 'zoomed' Point.
pointFromZoomedPoint(Point) - Method in interface uk.ac.man.cs.mig.util.graph.ui.Zoomable
Converts a Point from a 'zoomed' Point.
pointToZoomedPoint(Point) - Method in class uk.ac.man.cs.mig.util.graph.ui.impl.DefaultGraphView
Converts a Point to a 'zoomed' Point.
pointToZoomedPoint(Point) - Method in interface uk.ac.man.cs.mig.util.graph.ui.Zoomable
Converts a Point to a 'zoomed' Point.
POPUP_ADVANCE_ICON - Static variable in class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizIcons
 
POPUP_DISPLAY_PAGE - Static variable in class uk.ac.man.cs.mig.coode.owlviz.ui.options.OWLVizProperties
Deprecated. A String value that is the name of the popup page that is displayed when the mouse hovers over a node that represents an element from the ontology.
POPUP_HEIGHT - Static variable in class org.protege.editor.owl.ui.clsdescriptioneditor.OWLDescriptionAutoCompleter
 
POPUP_WIDTH - Static variable in class org.protege.editor.owl.ui.clsdescriptioneditor.OWLDescriptionAutoCompleter
 
popupClosed(PopupComponentEvent) - Method in interface uk.ac.man.cs.mig.util.popup.PopupComponentListener
 
PopupComponent - Class in uk.ac.man.cs.mig.util.popup
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Feb 16, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

PopupComponent(JComponent) - Constructor for class uk.ac.man.cs.mig.util.popup.PopupComponent
Constructs a popup using the specified content, which will automatically hide if a mouse click occurs outside of the popup area, and will behave in a modal fashion - i.e.
PopupComponent(JComponent, boolean, int, boolean) - Constructor for class uk.ac.man.cs.mig.util.popup.PopupComponent
Constructs a popup using the specified settings.
PopupComponentEvent - Class in uk.ac.man.cs.mig.util.popup
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Feb 16, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

PopupComponentEvent(PopupComponent) - Constructor for class uk.ac.man.cs.mig.util.popup.PopupComponentEvent
 
PopupComponentListener - Interface in uk.ac.man.cs.mig.util.popup
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Feb 16, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

PopupComponentTest - Class in uk.ac.man.cs.mig.util.popup.test
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Feb 16, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

PopupComponentTest() - Constructor for class uk.ac.man.cs.mig.util.popup.test.PopupComponentTest
 
popupIsDisplayed() - Method in class uk.ac.man.cs.mig.util.popup.PopupComponent
 
PopupManager - Class in uk.ac.man.cs.mig.coode.owlviz.ui.popup
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Sep 23, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

PopupManager() - Constructor for class uk.ac.man.cs.mig.coode.owlviz.ui.popup.PopupManager
 
PopupProvider - Interface in uk.ac.man.cs.mig.util.graph.ui
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Feb 12, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

PreferenceNode<V> - Interface in org.protege.editor.core.ui.preferences.node
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 08-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

PreferenceNodeGroup - Class in org.protege.editor.core.ui.preferences.node
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 08-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

PreferenceNodeGroup(String) - Constructor for class org.protege.editor.core.ui.preferences.node.PreferenceNodeGroup
 
PreferenceNodeGroupPanel - Class in org.protege.editor.core.ui.preferences.node
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 08-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

PreferenceNodeGroupPanel(List<PreferenceNodeGroup>) - Constructor for class org.protege.editor.core.ui.preferences.node.PreferenceNodeGroupPanel
 
PreferenceNodePanel - Class in org.protege.editor.core.ui.preferences.node
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 08-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

PreferenceNodePanel(PreferenceNodeGroup) - Constructor for class org.protege.editor.core.ui.preferences.node.PreferenceNodePanel
 
Preferences - Interface in org.protege.editor.core.prefs
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 20-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

PREFERENCES_KEY - Static variable in class org.protege.editor.core.BookMarkedURIManager
 
PREFERENCES_KEY - Static variable in class org.protege.editor.core.editorkit.RecentEditorKitManager
 
PREFERENCES_KEY - Static variable in class org.protege.editor.owl.model.find.EntityFinderPreferences
 
PREFERENCES_KEY - Static variable in class org.protege.editor.owl.ui.clsdescriptioneditor.ExpressionEditorPreferences
 
PREFERENCES_KEY - Static variable in class org.protege.editor.owl.ui.ontology.OntologyPreferences
 
PREFERENCES_KEY - Static variable in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.DotLayoutEngineProperties
 
PREFERENCES_SET_KEY - Static variable in class org.protege.editor.owl.ui.preferences.AnnotationPreferences
 
PREFERENCES_SET_KEY - Static variable in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.DotLayoutEngineProperties
 
PreferencesDialogPanel - Class in org.protege.editor.core.ui.preferences
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 08-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

PreferencesDialogPanel(EditorKit) - Constructor for class org.protege.editor.core.ui.preferences.PreferencesDialogPanel
 
PreferencesManager - Class in org.protege.editor.core.prefs
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 20-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

The preferences manager provides a global point for access to application preferences and other sets of preferences.

PreferencesManager() - Constructor for class org.protege.editor.core.prefs.PreferencesManager
 
PreferencesPanel - Class in org.protege.editor.core.ui.preferences
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 08-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

PreferencesPanel() - Constructor for class org.protege.editor.core.ui.preferences.PreferencesPanel
 
PreferencesPanelLayoutManager - Class in org.protege.editor.core.ui.preferences
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 28-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

PreferencesPanelLayoutManager(JComponent) - Constructor for class org.protege.editor.core.ui.preferences.PreferencesPanelLayoutManager
 
PreferencesPanelPlugin - Interface in org.protege.editor.core.ui.preferences
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 08-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

PreferencesPanelPluginJPFImpl - Class in org.protege.editor.core.ui.preferences
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 08-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

PreferencesPanelPluginJPFImpl(IExtension, EditorKit) - Constructor for class org.protege.editor.core.ui.preferences.PreferencesPanelPluginJPFImpl
 
PreferencesPanelPluginLoader - Class in org.protege.editor.core.ui.preferences
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 08-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

PreferencesPanelPluginLoader(EditorKit) - Constructor for class org.protege.editor.core.ui.preferences.PreferencesPanelPluginLoader
 
preferredLayoutSize(Container) - Method in class org.protege.editor.core.ui.preferences.PreferencesPanelLayoutManager
 
PrefixedOWLEntityAnnotationValueRenderer - Class in org.protege.editor.owl.ui.renderer
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 18-May-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

PrefixedOWLEntityAnnotationValueRenderer() - Constructor for class org.protege.editor.owl.ui.renderer.PrefixedOWLEntityAnnotationValueRenderer
 
PrefixMapper - Interface in org.protege.editor.owl.ui.prefix
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 22-Sep-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

PrefixMapperImpl - Class in org.protege.editor.owl.ui.prefix
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 22-Sep-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

PrefixMapperImpl(Map<String, String>) - Constructor for class org.protege.editor.owl.ui.prefix.PrefixMapperImpl
 
PrefixMapperImpl() - Constructor for class org.protege.editor.owl.ui.prefix.PrefixMapperImpl
 
PrefixMapperManager - Class in org.protege.editor.owl.ui.prefix
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 22-Sep-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

PrefixMapperTable - Class in org.protege.editor.owl.ui.prefix
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 22-Sep-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

PrefixMapperTable() - Constructor for class org.protege.editor.owl.ui.prefix.PrefixMapperTable
 
PrefixMapperTableModel - Class in org.protege.editor.owl.ui.prefix
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 22-Sep-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

PrefixMapperTableModel() - Constructor for class org.protege.editor.owl.ui.prefix.PrefixMapperTableModel
 
PrefixMappingPanel - Class in org.protege.editor.owl.ui.prefix
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 22-Sep-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

PrefixMappingPanel(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.prefix.PrefixMappingPanel
 
PrefixTableCellEditor - Class in org.protege.editor.owl.ui.prefix
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 22-Sep-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

PrefixTableCellEditor() - Constructor for class org.protege.editor.owl.ui.prefix.PrefixTableCellEditor
 
prepareEditor(TableCellEditor, int, int) - Method in class org.protege.editor.core.ui.util.CheckTable
 
prepareRenderer(TableCellRenderer, int, int) - Method in class org.protege.editor.core.ui.util.CheckTable
 
preprocess(String, Class<? extends OWLEntity>) - Method in class org.protege.editor.owl.model.entity.AbstractIDGenerator
 
prevButtonPressed() - Method in class uk.ac.man.cs.mig.util.wizard.Wizard
Called when the button that requests that the previous page be displayed.
prevButtonPressed(Wizard) - Method in class uk.ac.man.cs.mig.util.wizard.WizardPage
Called when this page is being displayed and the previous button was pressed.Override this method to be informed of this event.
prevCharIsCR - Variable in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.SimpleCharStream
 
prevCharIsLF - Variable in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.SimpleCharStream
 
preview(Class<T>, String, URI) - Method in class org.protege.editor.owl.model.entity.CustomOWLEntityFactory
 
preview(Class<T>, String, URI) - Method in interface org.protege.editor.owl.model.entity.OWLEntityFactory
Use this to check if the entity can be created without affecting any generated IDs
prevPage() - Method in class uk.ac.man.cs.mig.util.wizard.Wizard
Programmatically causes the Wizard to display the previous page.
prevPressed(WizardEvent) - Method in interface uk.ac.man.cs.mig.util.wizard.WizardEventListener
 
PROCESS_PATH_KEY - Static variable in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.DotLayoutEngineProperties
 
processChanges(List<? extends OWLOntologyChange>) - Method in class org.protege.editor.owl.ui.renderer.AbstractOWLEntityRenderer
 
processChanges(List<? extends OWLOntologyChange>) - Method in class org.protege.editor.owl.ui.renderer.OWLEntityAnnotationValueRenderer
 
processChanges(List<? extends OWLOntologyChange>) - Method in class org.protege.editor.owl.ui.renderer.PrefixedOWLEntityAnnotationValueRenderer
 
processMouseDragged(MouseEvent) - Method in class uk.ac.man.cs.mig.util.graph.ui.impl.DefaultThumbnailView
 
ProfileSelectorPanel - Class in org.protege.editor.owl.ui.ontology.wizard.move.byprofile
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Dec 3, 2008

ProfileSelectorPanel(MoveAxiomsByProfileKit) - Constructor for class org.protege.editor.owl.ui.ontology.wizard.move.byprofile.ProfileSelectorPanel
 
ProgrammaticEditEvent - Class in org.protege.editor.owl.ui.table
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 29-Sep-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

ProgrammaticEditEvent(Object) - Constructor for class org.protege.editor.owl.ui.table.ProgrammaticEditEvent
 
propagateMouseListenerEvent(MouseEvent) - Method in class uk.ac.man.cs.mig.util.popup.PopupComponent
Propagates certain mouse events, such as MOUSE_CLICKED, MOUSE_RELEASED etc.
propagateMouseMotionListenerEvents(MouseEvent) - Method in class uk.ac.man.cs.mig.util.popup.PopupComponent
 
PROPERTY_COLOR_KEY - Static variable in class org.protege.editor.core.ProtegeProperties
 
PROPERTY_FILE_PATH_NAME - Static variable in class uk.ac.man.cs.mig.coode.owlviz.ui.options.OWLVizProperties
Deprecated.  
propertyChange(PropertyChangeEvent) - Method in class org.protege.editor.core.ui.wizard.Wizard
Method used to listen for property change events from the model and update the dialog's graphical components as necessary.
propertyChange(PropertyChangeEvent) - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultGraphGenerator
This method gets called when a bound property is changed.
propertyChange(PropertyChangeEvent) - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultVisualisedObjectManager
This method gets called when a bound property is changed.
propertyChange(PropertyChangeEvent) - Method in class uk.ac.man.cs.mig.util.graph.ui.GraphView
This method gets called when a bound property is changed.
PropertyUtil - Class in org.protege.editor.core
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Mar 22, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

PropertyUtil() - Constructor for class org.protege.editor.core.PropertyUtil
 
PROTEGE_PREFIX - Static variable in class org.protege.editor.core.ProtegeProperties
 
PROTEGE_PROPERTY_PREFIX - Static variable in class org.protege.editor.core.plugin.PluginProperties
 
ProtegeAction - Class in org.protege.editor.core.ui.action
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Mar 27, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

An action that is associated with a particular EditorKit.

ProtegeAction() - Constructor for class org.protege.editor.core.ui.action.ProtegeAction
 
ProtegeActionPlugin - Interface in org.protege.editor.core.ui.action
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Mar 28, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

A plugin that descirbes a ProtegeAction.

ProtegeActionPluginJPFImpl - Class in org.protege.editor.core.ui.action
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Mar 29, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

ProtegeActionPluginJPFImpl(EditorKit, IExtension) - Constructor for class org.protege.editor.core.ui.action.ProtegeActionPluginJPFImpl
 
ProtegeAppleApplication - Class in org.protege.editor.core.platform.apple
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Sep 19, 2008

ProtegeApplication - Class in org.protege.editor.core
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Mar 15, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

The ProtegeApplication is the main entry point to Protege.

ProtegeApplication() - Constructor for class org.protege.editor.core.ProtegeApplication
 
ProtegeDynamicAction - Class in org.protege.editor.core.ui.action
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 17-Sep-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

ProtegeDynamicAction() - Constructor for class org.protege.editor.core.ui.action.ProtegeDynamicAction
 
ProtegeManager - Class in org.protege.editor.core
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Mar 15, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

ProtegeManager is a singleton that manages the Protege application.

ProtegeOWL - Class in org.protege.editor.owl
This class is minimal for the moment.
ProtegeOWL() - Constructor for class org.protege.editor.owl.ProtegeOWL
 
ProtegeOWLAction - Class in org.protege.editor.owl.ui.action
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 13-May-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

ProtegeOWLAction() - Constructor for class org.protege.editor.owl.ui.action.ProtegeOWLAction
 
ProtegeOWLEntityChecker - Class in org.protege.editor.owl.model.parser
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: May 8, 2008

ProtegeOWLEntityChecker(OWLModelManager) - Constructor for class org.protege.editor.owl.model.parser.ProtegeOWLEntityChecker
 
ProtegeOWLProperties - Class in org.protege.editor.owl
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 11-May-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

ProtegeOWLReasonerFactory - Interface in org.protege.editor.owl.model.inference
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 16-Apr-2007

ProtegeOWLReasonerFactoryAdapter - Class in org.protege.editor.owl.model.inference
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 16-Apr-2007

ProtegeOWLReasonerFactoryAdapter() - Constructor for class org.protege.editor.owl.model.inference.ProtegeOWLReasonerFactoryAdapter
 
ProtegeOWLReasonerFactoryPlugin - Interface in org.protege.editor.owl.model.inference
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 19-May-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

ProtegeOWLReasonerFactoryPluginJPFImpl - Class in org.protege.editor.owl.model.inference
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 19-May-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

ProtegeOWLReasonerFactoryPluginJPFImpl(OWLModelManager, IExtension) - Constructor for class org.protege.editor.owl.model.inference.ProtegeOWLReasonerFactoryPluginJPFImpl
 
ProtegeOWLReasonerFactoryPluginLoader - Class in org.protege.editor.owl.model.inference
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 19-May-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

ProtegeOWLReasonerFactoryPluginLoader(OWLModelManager) - Constructor for class org.protege.editor.owl.model.inference.ProtegeOWLReasonerFactoryPluginLoader
 
ProtegePlasticTheme - Class in org.protege.editor.core.ui.util
 
ProtegePlasticTheme() - Constructor for class org.protege.editor.core.ui.util.ProtegePlasticTheme
 
ProtegePlugin<E extends ProtegePluginInstance> - Interface in org.protege.editor.core.plugin
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Mar 28, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

A ProtegePlugin acts as a factory for ProtegePluginInstance.

ProtegePluginInstance - Interface in org.protege.editor.core.plugin
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Mar 22, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

The base interface for plugins.

ProtegeProperties - Class in org.protege.common
 
ProtegeProperties() - Constructor for class org.protege.common.ProtegeProperties
 
ProtegeProperties - Class in org.protege.editor.core
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Mar 22, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

ProtegeRotatingAppender - Class in org.protege.common.log
 
ProtegeRotatingAppender() - Constructor for class org.protege.common.log.ProtegeRotatingAppender
 
ProtegeTreeUI - Class in org.protege.editor.core.ui.tree
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 13-Sep-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

ProtegeTreeUI(BasicTreeUI) - Constructor for class org.protege.editor.core.ui.tree.ProtegeTreeUI
 
ProtegeWelcomeFrame - Class in org.protege.editor.core
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Mar 27, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

ProtegeWelcomeFrame() - Constructor for class org.protege.editor.core.ProtegeWelcomeFrame
 
ProtegeWelcomePanel - Class in org.protege.editor.core.ui
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Apr 27, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

ProtegeWelcomePanel() - Constructor for class org.protege.editor.core.ui.ProtegeWelcomePanel
 
pruneInvalidDescriptors() - Method in class org.protege.editor.core.editorkit.RecentEditorKitManager
 
PseudoRandomAutoIDGenerator - Class in org.protege.editor.owl.model.entity
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Jul 25, 2008

PseudoRandomAutoIDGenerator() - Constructor for class org.protege.editor.owl.model.entity.PseudoRandomAutoIDGenerator
 
PullIntoActiveOntologyAction<R> - Class in org.protege.editor.owl.ui.framelist
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 18-Dec-2007

PullIntoActiveOntologyAction() - Constructor for class org.protege.editor.owl.ui.framelist.PullIntoActiveOntologyAction
 
put(Object, T) - Method in class org.protege.editor.core.AbstractModelManager
 
put(Object, T) - Method in class org.protege.editor.core.editorkit.AbstractEditorKit
 
put(Object, T) - Method in interface org.protege.editor.core.editorkit.EditorKit
 
put(Object, T) - Method in interface org.protege.editor.core.ModelManager
 
put(String, String) - Method in class org.protege.editor.core.plugin.PluginParameterExtensionMatcher
Adds a paramter value that must be matched
putBoolean(String, boolean) - Method in class org.protege.editor.core.prefs.JavaBackedPreferencesImpl
 
putBoolean(String, boolean) - Method in interface org.protege.editor.core.prefs.Preferences
 
putBoolean(String, boolean) - Method in class org.protege.editor.owl.model.library.OntologyLibraryMemento
 
putByteArray(String, byte[]) - Method in class org.protege.editor.core.prefs.JavaBackedPreferencesImpl
 
putByteArray(String, byte[]) - Method in interface org.protege.editor.core.prefs.Preferences
 
putByteArrayList(String, List<byte[]>) - Method in class org.protege.editor.core.prefs.JavaBackedPreferencesImpl
 
putByteArrayList(String, List<byte[]>) - Method in interface org.protege.editor.core.prefs.Preferences
 
putDouble(String, double) - Method in class org.protege.editor.core.prefs.JavaBackedPreferencesImpl
 
putDouble(String, double) - Method in interface org.protege.editor.core.prefs.Preferences
 
putFile(String, File) - Method in class org.protege.editor.owl.model.library.OntologyLibraryMemento
 
putFloat(String, float) - Method in class org.protege.editor.core.prefs.JavaBackedPreferencesImpl
 
putFloat(String, float) - Method in interface org.protege.editor.core.prefs.Preferences
 
putInt(String, int) - Method in class org.protege.editor.core.prefs.JavaBackedPreferencesImpl
 
putInt(String, int) - Method in interface org.protege.editor.core.prefs.Preferences
 
putLong(String, long) - Method in class org.protege.editor.core.prefs.JavaBackedPreferencesImpl
 
putLong(String, long) - Method in interface org.protege.editor.core.prefs.Preferences
 
putString(String, String) - Method in class org.protege.editor.core.prefs.JavaBackedPreferencesImpl
 
putString(String, String) - Method in interface org.protege.editor.core.prefs.Preferences
 
putString(String, String) - Method in class org.protege.editor.owl.model.library.OntologyLibraryMemento
 
putStringList(String, List<String>) - Method in class org.protege.editor.core.prefs.JavaBackedPreferencesImpl
 
putStringList(String, List<String>) - Method in interface org.protege.editor.core.prefs.Preferences
 
putURI(String, URI) - Method in class org.protege.editor.owl.model.library.OntologyLibraryMemento
 
putURL(String, URL) - Method in class org.protege.editor.owl.model.library.OntologyLibraryMemento
 

R

RANK_SPACING - Static variable in class uk.ac.man.cs.mig.coode.owlviz.ui.options.OWLVizProperties
Deprecated. The rank spacing used by DOT
RANK_SPACING - Static variable in class uk.ac.man.cs.mig.util.graph.outputrenderer.impl.DotOutputGraphRenderer
 
RANK_SPACING_KEY - Static variable in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.DotLayoutEngineProperties
 
RDFXMLRenderingViewComponent - Class in org.protege.editor.owl.ui.view
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 20-Mar-2007

RDFXMLRenderingViewComponent() - Constructor for class org.protege.editor.owl.ui.view.RDFXMLRenderingViewComponent
 
reactToOntologyChange(OWLOntologyChange) - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
 
readChar() - Method in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.SimpleCharStream
 
readViewLayout() - Method in class org.protege.editor.core.ui.view.ViewsPane
Reads a serialisation of a view layout from the preferences system
realise() - Method in class org.protege.editor.owl.model.inference.NoOpReasoner
 
REASONER_PLUGIN_TYPE_ID - Static variable in interface org.protege.editor.owl.model.inference.ProtegeOWLReasonerFactoryPlugin
 
ReasonerException - Exception in org.protege.editor.owl.model.inference
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 26-Nov-2007

ReasonerException(String) - Constructor for exception org.protege.editor.owl.model.inference.ReasonerException
 
ReasonerException(String, Throwable) - Constructor for exception org.protege.editor.owl.model.inference.ReasonerException
 
ReasonerException(Throwable) - Constructor for exception org.protege.editor.owl.model.inference.ReasonerException
 
ReasonerProgressMonitor - Interface in org.protege.editor.owl.model.inference
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 10-Oct-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

An interface to monitor the progress of classification.

ReasonerProgressUI - Class in org.protege.editor.owl.ui.inference
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 10-Oct-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

ReasonerProgressUI(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.inference.ReasonerProgressUI
 
ReasonerQueryInvoker<O extends org.semanticweb.owl.model.OWLObject> - Interface in org.coode.dlquery
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 11-Oct-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

rebuild() - Method in interface org.protege.editor.owl.model.cache.OWLEntityRenderingCache
 
rebuild() - Method in class org.protege.editor.owl.model.cache.OWLEntityRenderingCacheImpl
 
rebuild() - Method in class org.protege.editor.owl.model.hierarchy.AssertedSuperClassHierarchyProvider
 
rebuild() - Method in class org.protege.editor.owl.model.hierarchy.cls.InferredOWLClassHierarchyProvider
 
rebuild() - Method in class org.protege.editor.owl.model.library.folder.FolderOntologyLibrary
 
rebuild() - Method in interface org.protege.editor.owl.model.library.OntologyLibrary
If the library caches information, then this method rebuilds the cache and refreshes the library.
rebuild() - Method in class uk.ac.man.cs.mig.coode.owlviz.model.OWLOntologyImportsGraphModel
 
rebuildAnnotationURIList() - Method in class org.protege.editor.owl.ui.frame.AnnotationURIList
 
rebuildAnnotationURIList(Set<OWLOntology>) - Method in class org.protege.editor.owl.ui.frame.AnnotationURIList
 
rebuildChildMenuItems(JMenu) - Method in class org.protege.editor.core.ui.action.OpenRecentAction
 
rebuildChildMenuItems(JMenu) - Method in class org.protege.editor.core.ui.action.ProtegeDynamicAction
 
rebuildEntityIndices() - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
 
rebuildList() - Method in class org.protege.editor.owl.ui.ontology.imports.wizard.LibraryOntologiesList
 
rebuildOWLClassHierarchy() - Method in interface org.protege.editor.owl.model.OWLModelManager
Deprecated. use getOWLHierarchyManager() instead
rebuildOWLClassHierarchy() - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
 
rebuildOWLDataPropertyHierarchy() - Method in interface org.protege.editor.owl.model.OWLModelManager
Deprecated. use getOWLHierarchyManager() instead
rebuildOWLDataPropertyHierarchy() - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
 
rebuildOWLObjectPropertyHierarchy() - Method in interface org.protege.editor.owl.model.OWLModelManager
Deprecated. use getOWLHierarchyManager() instead
rebuildOWLObjectPropertyHierarchy() - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
 
RECENT_EDITOR_KITS_FILE_NAME - Static variable in class org.protege.editor.core.editorkit.RecentEditorKitManager
 
RECENT_LOCATIONS_KEY - Static variable in class org.protege.editor.owl.ui.ontology.wizard.create.PhysicalLocationPanel
 
RecentEditorKitManager - Class in org.protege.editor.core.editorkit
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 17-Sep-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

recordListenerAdded(L) - Method in class org.protege.editor.owl.model.util.ListenerManager
 
recordListenerRemoved(L) - Method in class org.protege.editor.owl.model.util.ListenerManager
 
rectangleFromZoomedRectangle(Rectangle) - Method in class uk.ac.man.cs.mig.util.graph.ui.impl.DefaultGraphView
Converts a Rectangle from a 'zoomed' Rectangle.
rectangleFromZoomedRectangle(Rectangle) - Method in interface uk.ac.man.cs.mig.util.graph.ui.Zoomable
Converts a Rectangle from a 'zoomed' Rectangle.
rectangleToZoomedRectangle(Rectangle) - Method in class uk.ac.man.cs.mig.util.graph.ui.impl.DefaultGraphView
Converts a Rectangle to a 'zoomed' Rectangle.
rectangleToZoomedRectangle(Rectangle) - Method in interface uk.ac.man.cs.mig.util.graph.ui.Zoomable
Converts a Rectangle to a 'zoomed' Rectangle.
redo() - Method in interface org.protege.editor.owl.model.history.HistoryManager
 
redo() - Method in class org.protege.editor.owl.model.history.HistoryManagerImpl
 
RedoAction - Class in org.protege.editor.owl.ui.action
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 03-Feb-2007

RedoAction() - Constructor for class org.protege.editor.owl.ui.action.RedoAction
 
refill() - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrame
 
refill(OWLOntology) - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSection
Refills the section with rows.
refill(OWLOntology) - Method in class org.protege.editor.owl.ui.frame.AxiomListFrameSection
 
refill(OWLOntology) - Method in class org.protege.editor.owl.ui.frame.cls.AbstractOWLClassAxiomFrameSection
 
refill(OWLOntology) - Method in class org.protege.editor.owl.ui.frame.ExplanationFrameSection
 
refill(OWLOntology) - Method in class org.protege.editor.owl.ui.frame.InferredAxiomsFrameSection
 
refill(OWLOntology) - Method in class org.protege.editor.owl.ui.frame.InheritedAnonymousClassesFrameSection
 
refill(OWLOntology) - Method in class org.protege.editor.owl.ui.frame.OWLAnnotationFrameSection
Refills the section with rows.
refill(OWLOntology) - Method in class org.protege.editor.owl.ui.frame.OWLAxiomAnnotationsFrameSection
 
refill(OWLOntology) - Method in class org.protege.editor.owl.ui.frame.OWLClassAssertionAxiomTypeFrameSection
Refills the section with rows.
refill(OWLOntology) - Method in class org.protege.editor.owl.ui.frame.OWLDataPropertyAssertionAxiomFrameSection
Refills the section with rows.
refill(OWLOntology) - Method in class org.protege.editor.owl.ui.frame.OWLDataPropertyRangeFrameSection
 
refill(OWLOntology) - Method in class org.protege.editor.owl.ui.frame.OWLDifferentIndividualsAxiomFrameSection
Refills the section with rows.
refill(OWLOntology) - Method in class org.protege.editor.owl.ui.frame.OWLDisjointDataPropertiesFrameSection
 
refill(OWLOntology) - Method in class org.protege.editor.owl.ui.frame.OWLDisjointObjectPropertiesFrameSection
Refills the section with rows.
refill(OWLOntology) - Method in class org.protege.editor.owl.ui.frame.OWLEquivalentDataPropertiesFrameSection
 
refill(OWLOntology) - Method in class org.protege.editor.owl.ui.frame.OWLEquivalentObjectPropertiesAxiomFrameSection
Refills the section with rows.
refill(OWLOntology) - Method in class org.protege.editor.owl.ui.frame.OWLGeneralClassAxiomsFrameSection
 
refill(OWLOntology) - Method in class org.protege.editor.owl.ui.frame.OWLImportsDeclarationFrameSection
Refills the section with rows.
refill(OWLOntology) - Method in class org.protege.editor.owl.ui.frame.OWLIndirectImportsFrameSection
 
refill(OWLOntology) - Method in class org.protege.editor.owl.ui.frame.OWLInverseObjectPropertiesAxiomFrameSection
Refills the section with rows.
refill(OWLOntology) - Method in class org.protege.editor.owl.ui.frame.OWLNegativeDataPropertyAssertionFrameSection
Refills the section with rows.
refill(OWLOntology) - Method in class org.protege.editor.owl.ui.frame.OWLNegativeObjectPropertyAssertionFrameSection
Refills the section with rows.
refill(OWLOntology) - Method in class org.protege.editor.owl.ui.frame.OWLObjectPropertyAssertionAxiomFrameSection
Refills the section with rows.
refill(OWLOntology) - Method in class org.protege.editor.owl.ui.frame.OWLObjectPropertyRangeFrameSection
Refills the section with rows.
refill(OWLOntology) - Method in class org.protege.editor.owl.ui.frame.OWLOntologyAnnotationAxiomFrameSection
Refills the section with rows.
refill(OWLOntology) - Method in class org.protege.editor.owl.ui.frame.OWLPropertyChainAxiomFrameSection
Refills the section with rows.
refill(OWLOntology) - Method in class org.protege.editor.owl.ui.frame.OWLSameIndividualsAxiomFrameSection
Refills the section with rows.
refill(OWLOntology) - Method in class org.protege.editor.owl.ui.frame.OWLSubDataPropertyAxiomSuperPropertyFrameSection
 
refill(OWLOntology) - Method in class org.protege.editor.owl.ui.frame.OWLSubObjectPropertyAxiomSuperPropertyFrameSection
Refills the section with rows.
refill(OWLOntology) - Method in class org.protege.editor.owl.ui.frame.property.AbstractPropertyDomainFrameSection
 
refill(OWLOntology) - Method in class org.protege.editor.owl.ui.frame.SWRLRulesFrameSection
 
refill() - Method in class org.protege.editor.owl.ui.ontology.location.PhysicalLocationTableModel
 
refill() - Method in class org.protege.editor.owl.ui.view.OWLIndividualListViewComponent
 
refill() - Method in class org.protege.editor.owl.ui.view.OWLMembersListViewComponent
 
refillInferred() - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSection
 
refillInferred() - Method in class org.protege.editor.owl.ui.frame.AxiomListFrameSection
 
refillInferred() - Method in class org.protege.editor.owl.ui.frame.InferredAxiomsFrameSection
 
refillInferred() - Method in class org.protege.editor.owl.ui.frame.InheritedAnonymousClassesFrameSection
 
refillInferred() - Method in class org.protege.editor.owl.ui.frame.OWLClassAssertionAxiomIndividualSection
 
refillInferred() - Method in class org.protege.editor.owl.ui.frame.OWLClassAssertionAxiomTypeFrameSection
 
refillInferred() - Method in class org.protege.editor.owl.ui.frame.OWLDataPropertyAssertionAxiomFrameSection
 
refillInferred() - Method in class org.protege.editor.owl.ui.frame.OWLDataPropertyRangeFrameSection
 
refillInferred() - Method in class org.protege.editor.owl.ui.frame.OWLDifferentIndividualsAxiomFrameSection
 
refillInferred() - Method in class org.protege.editor.owl.ui.frame.OWLEquivalentClassesAxiomFrameSection
 
refillInferred() - Method in class org.protege.editor.owl.ui.frame.OWLEquivalentDataPropertiesFrameSection
 
refillInferred() - Method in class org.protege.editor.owl.ui.frame.OWLEquivalentObjectPropertiesAxiomFrameSection
 
refillInferred() - Method in class org.protege.editor.owl.ui.frame.OWLInverseObjectPropertiesAxiomFrameSection
 
refillInferred() - Method in class org.protege.editor.owl.ui.frame.OWLObjectPropertyAssertionAxiomFrameSection
 
refillInferred() - Method in class org.protege.editor.owl.ui.frame.OWLObjectPropertyRangeFrameSection
 
refillInferred() - Method in class org.protege.editor.owl.ui.frame.OWLSubClassAxiomFrameSection
 
refillInferred() - Method in class org.protege.editor.owl.ui.frame.OWLSubDataPropertyAxiomSuperPropertyFrameSection
 
refillInferred() - Method in class org.protege.editor.owl.ui.frame.OWLSubObjectPropertyAxiomSuperPropertyFrameSection
 
refillInferred() - Method in class org.protege.editor.owl.ui.frame.property.AbstractPropertyDomainFrameSection
 
refresh() - Method in interface org.protege.editor.core.OntologyRepository
Ensures the repository is up to date
refresh() - Method in class org.protege.editor.owl.model.cache.OWLExpressionUserCache
 
refresh() - Method in class org.protege.editor.owl.model.repository.ManchesterRepository
 
refresh() - Method in class org.protege.editor.owl.ui.usage.UsageByEntityTreeModel
 
refresh() - Method in interface org.protege.editor.owl.ui.usage.UsageTreeModel
 
REFRESH_ICON - Static variable in class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizIcons
 
RefreshableComponent - Interface in org.protege.editor.core.ui
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 29-Nov-2007

A marker interface for components that can regenerate the view that they display.
refreshComponent() - Method in interface org.protege.editor.core.ui.RefreshableComponent
Clears the data displayed by the component and reloads data.
refreshComponent() - Method in class org.protege.editor.owl.ui.clsdescriptioneditor.ExpressionEditor
 
refreshComponent() - Method in class org.protege.editor.owl.ui.framelist.OWLFrameList2
 
refreshComponent() - Method in class org.protege.editor.owl.ui.tree.OWLModelManagerTree
 
refreshComponent() - Method in class org.protege.editor.owl.ui.view.AbstractOWLSelectionViewComponent
 
refreshComponent() - Method in class org.protege.editor.owl.ui.view.OWLIndividualListViewComponent
 
refreshComponents() - Method in class org.protege.editor.owl.model.OWLWorkspace
 
RefreshDisplayCommand - Class in uk.ac.man.cs.mig.coode.owlviz.command
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Sep 19, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

RefreshDisplayCommand(OWLVizView, JTree) - Constructor for class uk.ac.man.cs.mig.coode.owlviz.command.RefreshDisplayCommand
 
registerOntologySelectionStrategy(OntologySelectionStrategy) - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
 
registerOWLEntityDisplayProvider(OWLEntityDisplayProvider) - Method in class org.protege.editor.owl.model.OWLWorkspace
 
registerSelectionAction(OWLSelectionViewAction) - Method in class org.protege.editor.owl.ui.view.AbstractOWLSelectionViewComponent
 
registerShapeMapping(Class, String) - Static method in class uk.ac.man.cs.mig.util.graph.outputrenderer.impl.DotOutputGraphRenderer
Adds a map to convert a class of node to a dot shape name.
registerViews(WorkspaceViewsTab) - Method in class org.protege.editor.core.ui.workspace.WorkspaceViewManager
 
registerWizardPanel(Object, WizardPanel) - Method in class org.protege.editor.core.ui.wizard.Wizard
Add a Component as a panel for the wizard dialog by registering its WizardPanel object.
ReInit(InputStream) - Method in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.DotParser
 
ReInit(InputStream, String) - Method in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.DotParser
 
ReInit(Reader) - Method in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.DotParser
 
ReInit(DotParserTokenManager) - Method in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.DotParser
 
ReInit(SimpleCharStream) - Method in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.DotParserTokenManager
 
ReInit(SimpleCharStream, int) - Method in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.DotParserTokenManager
 
ReInit(Reader, int, int, int) - Method in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.SimpleCharStream
 
ReInit(Reader, int, int) - Method in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.SimpleCharStream
 
ReInit(Reader) - Method in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.SimpleCharStream
 
ReInit(InputStream, String, int, int, int) - Method in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.SimpleCharStream
 
ReInit(InputStream, int, int, int) - Method in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.SimpleCharStream
 
ReInit(InputStream, String) - Method in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.SimpleCharStream
 
ReInit(InputStream) - Method in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.SimpleCharStream
 
ReInit(InputStream, String, int, int) - Method in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.SimpleCharStream
 
ReInit(InputStream, int, int) - Method in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.SimpleCharStream
 
Relation<X> - Interface in org.protege.editor.owl.model.hierarchy.roots
This interface simply represents a relation R: X -> X.
RELATIVE_PATH - Static variable in class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizIcons
 
reload() - Method in class org.protege.editor.core.update.RemotePluginRegistry
 
reload(OWLOntology) - Method in interface org.protege.editor.owl.model.OWLModelManager
 
reload(OWLOntology) - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
 
reload() - Method in class org.protege.editor.owl.ui.prefix.PrefixMapperManager
 
reload() - Method in class org.protege.editor.owl.ui.tree.OWLModelManagerTree
 
reload() - Method in class org.protege.editor.owl.ui.tree.OWLObjectTree
Causes the tree to be reloaded.
RemotePluginRegistry - Class in org.protege.editor.core.update
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Nov 5, 2008

RemotePluginRegistry(URL) - Constructor for class org.protege.editor.core.update.RemotePluginRegistry
 
RemovableObjectList<O> - Class in org.protege.editor.core.ui.list
Author: Matthew Horridge
The University Of Manchester
Information Management Group
Date: 21-Sep-2008

RemovableObjectList() - Constructor for class org.protege.editor.core.ui.list.RemovableObjectList
 
RemovableObjectList.RemovableObjectListItem - Class in org.protege.editor.core.ui.list
 
RemovableObjectList.RemovableObjectListItem(O) - Constructor for class org.protege.editor.core.ui.list.RemovableObjectList.RemovableObjectListItem
 
remove(URI) - Method in class org.protege.editor.core.BookMarkedURIManager
 
remove(Node) - Method in interface uk.ac.man.cs.mig.util.graph.graph.Graph
Removes the specified Node from the Graph.
remove(Edge) - Method in interface uk.ac.man.cs.mig.util.graph.graph.Graph
Removes an Edge from the Graph.
remove(Node, Node) - Method in interface uk.ac.man.cs.mig.util.graph.graph.Graph
Removes the Edge that connects the specified Nodes (if the Nodes are contained in the Graph.
remove(Node) - Method in class uk.ac.man.cs.mig.util.graph.graph.impl.DefaultGraph
Removes the specified Node from the Graph.
remove(Edge) - Method in class uk.ac.man.cs.mig.util.graph.graph.impl.DefaultGraph
Removes an Edge from the Graph.
remove(Node, Node) - Method in class uk.ac.man.cs.mig.util.graph.graph.impl.DefaultGraph
Removes the Edge that connects the specified Nodes (if the Nodes are contained in the Graph.
remove(Object) - Method in class uk.ac.man.cs.mig.util.graph.model.impl.DefaultGraphModel
 
removeAll() - Method in interface uk.ac.man.cs.mig.util.graph.graph.Graph
Removes all the edges and nodes from the graph.
removeAll() - Method in class uk.ac.man.cs.mig.util.graph.graph.impl.DefaultGraph
Removes all the edges and nodes from the graph.
removeAllActions() - Method in class org.protege.editor.core.ui.view.ViewBanner
Removes all actions from the header.
RemoveAllDisjointAxiomsAction - Class in org.protege.editor.owl.ui.action
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 30-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

RemoveAllDisjointAxiomsAction() - Constructor for class org.protege.editor.owl.ui.action.RemoveAllDisjointAxiomsAction
 
removeBusyListener(BackgroundTaskListener) - Method in class org.protege.editor.core.ui.progress.BackgroundTaskManager
 
removeChangeListener(ChangeListener) - Method in class org.coode.dlquery.ResultsList
 
removeChangeListener(ChangeListener) - Method in class org.protege.editor.core.ui.util.FilePathPanel
 
removeChangeListener(ChangeListener) - Method in class org.protege.editor.core.ui.util.FileURIPanel
 
removeChangeListener(ChangeListener) - Method in class org.protege.editor.core.ui.util.URLPanel
 
removeChangeListener(ChangeListener) - Method in interface org.protege.editor.owl.model.selection.OWLSelectionHistoryManager
 
removeChangeListener(ChangeListener) - Method in class org.protege.editor.owl.model.selection.OWLSelectionHistoryManagerImpl
 
removeChangeListener(ChangeListener) - Method in interface org.protege.editor.owl.ui.action.ActionTarget
 
removeChangeListener(ChangeListener) - Method in class org.protege.editor.owl.ui.clshierarchy.AbstractOWLClassHierarchyViewComponent
 
removeChangeListener(ChangeListener) - Method in class org.protege.editor.owl.ui.explanation.ExplanationGeneratorPanel
 
removeChangeListener(ChangeListener) - Method in class org.protege.editor.owl.ui.framelist.OWLFrameList2
 
removeChangeListener(ChangeListener) - Method in class org.protege.editor.owl.ui.OWLIndividualListComponent
 
removeChangeListener(ChangeListener) - Method in class org.protege.editor.owl.ui.view.AbstractOWLPropertyHierarchyViewComponent
 
removeChangeListener(ChangeListener) - Method in class org.protege.editor.owl.ui.view.AnonymousClassesView
 
removeChangeListener(ChangeListener) - Method in class org.protege.editor.owl.ui.view.ChangeListenerMediator
Removes a previously added listener
removeChangeListener(ChangeListener) - Method in interface org.protege.editor.owl.ui.view.Copyable
Removes a previously added change listener.
removeChangeListener(ChangeListener) - Method in interface org.protege.editor.owl.ui.view.Cuttable
 
removeChangeListener(ChangeListener) - Method in class org.protege.editor.owl.ui.view.OWLIndividualListViewComponent
 
removeChangeListener(ChangeListener) - Method in interface org.protege.editor.owl.ui.view.Pasteable
 
removeCheckListListener(CheckList.CheckListListener) - Method in class org.protege.editor.core.ui.util.CheckList
 
removeCheckSelectionListener(ListSelectionListener) - Method in class org.protege.editor.core.ui.util.CheckTable
 
removeChild(DefaultGraphNode) - Method in class uk.ac.man.cs.mig.util.graph.model.impl.DefaultGraphNode
 
removeComponentFromParent(JComponent) - Static method in class org.protege.editor.owl.ui.error.ParseErrorPanel
 
removeEditorKit(EditorKit) - Method in class org.protege.editor.core.editorkit.EditorKitManager
Removes an open EditorKit.
removeExportFormat(ExportFormat) - Static method in class uk.ac.man.cs.mig.util.graph.export.ExportFormatManager
Removes an ExportFormat that was previously added.
removeFilter(UsageFilter) - Method in class org.protege.editor.owl.ui.usage.UsageByEntityTreeModel
 
removeFilter(UsageFilter) - Method in interface org.protege.editor.owl.ui.usage.UsageTreeModel
 
removeFrameListener(OWLFrameListener) - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrame
 
removeFrameListener(OWLFrameListener) - Method in interface org.protege.editor.owl.ui.frame.OWLFrame
Removes a frame listener from this frame.
removeFromChildren() - Method in class uk.ac.man.cs.mig.util.graph.model.impl.DefaultGraphNode
 
removeFromParents() - Method in class uk.ac.man.cs.mig.util.graph.model.impl.DefaultGraphNode
 
removeGraphGeneratorListener(GraphGeneratorListener) - Method in interface uk.ac.man.cs.mig.util.graph.controller.GraphGenerator
Removes a previously added GraphGeneratedListener
removeGraphGeneratorListener(GraphGeneratorListener) - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultGraphGenerator
Removes a previously added GraphGeneratedListener
removeGraphModelListener(GraphModelListener) - Method in interface uk.ac.man.cs.mig.util.graph.model.GraphModel
Removes a previously added GraphModelListener.
removeGraphModelListener(GraphModelListener) - Method in class uk.ac.man.cs.mig.util.graph.model.impl.AbstractGraphModel
Removes a previously added GraphModelListener.
removeGraphSelectionModelListener(GraphSelectionModelListener) - Method in interface uk.ac.man.cs.mig.util.graph.controller.GraphSelectionModel
Removes a previously added GraphSelectionModelListener.
removeGraphSelectionModelListener(GraphSelectionModelListener) - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultGraphSelectionModel
Removes a previously added GraphSelectionModelListener.
removeGraphSelectionModelListener(GraphSelectionModelListener) - Method in class uk.ac.man.cs.mig.util.graph.ui.GraphComponent
 
removeIOListener(IOListener) - Method in interface org.protege.editor.owl.model.OWLModelManager
 
removeIOListener(IOListener) - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
 
removeItemListener(ItemListener) - Method in class org.protege.editor.owl.ui.OntologyFormatPanel
 
removeLayoutComponent(Component) - Method in class org.protege.editor.core.ui.preferences.PreferencesPanelLayoutManager
 
removeLibraray(OntologyLibrary) - Method in class org.protege.editor.owl.model.library.OntologyLibraryManager
 
removeListener(ErrorLogListener) - Method in class org.protege.editor.core.ui.error.ErrorLog
 
removeListener(OWLObjectHierarchyProviderListener<N>) - Method in class org.protege.editor.owl.model.hierarchy.AbstractOWLObjectHierarchyProvider
 
removeListener(OWLObjectHierarchyProviderListener<N>) - Method in interface org.protege.editor.owl.model.hierarchy.OWLObjectHierarchyProvider
 
removeListener(OntologySourcesListener) - Method in class org.protege.editor.owl.model.io.OntologySourcesManager
 
removeListener(NamespaceManagerListener) - Method in class org.protege.editor.owl.model.namespace.AbstractNamespaceManager
 
removeListener(NamespaceManagerListener) - Method in interface org.protege.editor.owl.model.namespace.NamespaceManager
 
removeListener(OntologyVisibilityManagerListener) - Method in interface org.protege.editor.owl.model.OntologyVisibilityManager
 
removeListener(OntologyVisibilityManagerListener) - Method in class org.protege.editor.owl.model.OntologyVisibilityManagerImpl
 
removeListener(OWLModelManagerListener) - Method in interface org.protege.editor.owl.model.OWLModelManager
 
removeListener(OWLModelManagerListener) - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
 
removeListener(OWLSelectionModelListener) - Method in interface org.protege.editor.owl.model.selection.OWLSelectionModel
Removes a previously added OWLSelectionModelListener.
removeListener(OWLSelectionModelListener) - Method in class org.protege.editor.owl.model.selection.OWLSelectionModelImpl
 
removeListener(OWLEntityRendererListener) - Method in class org.protege.editor.owl.ui.renderer.AbstractOWLEntityRenderer
 
removeListener(OWLEntityRendererListener) - Method in interface org.protege.editor.owl.ui.renderer.OWLModelManagerEntityRenderer
 
removeListener(WizardEventListener) - Method in class uk.ac.man.cs.mig.util.wizard.Wizard
Removes a previously added listener.
removeListSelectionListener(ListSelectionListener) - Method in class org.protege.editor.core.update.PluginTable
 
RemoveLocalDisjointAxiomsAction - Class in org.protege.editor.owl.ui.action
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 30-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

RemoveLocalDisjointAxiomsAction() - Constructor for class org.protege.editor.owl.ui.action.RemoveLocalDisjointAxiomsAction
 
removeMapping(String, String) - Method in interface org.protege.editor.owl.model.namespace.NamespaceManager
Removes a previously added namespace prefix mapping.
removeMapping(String, String) - Method in class org.protege.editor.owl.model.namespace.NamespaceManagerImpl
 
removeMapping(String) - Method in class org.protege.editor.owl.ui.prefix.PrefixMapperTableModel
 
removeModelManagerListener(ModelManagerListener) - Method in class org.protege.editor.core.AbstractModelManager
 
removeModelManagerListener(ModelManagerListener) - Method in interface org.protege.editor.core.ModelManager
 
removeNode(Object) - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultGraphGenerator
 
removeNodeClickedListener(NodeClickedListener) - Method in class uk.ac.man.cs.mig.util.graph.ui.GraphComponent
 
removeNodeClickedListener(NodeClickedListener) - Method in class uk.ac.man.cs.mig.util.graph.ui.GraphView
Removes a previously added NodeClickedListener.
removeOntology(OWLOntology) - Method in interface org.protege.editor.owl.model.OWLModelManager
Remove the given ontology from the model manager.
removeOntology(OWLOntology) - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
 
removeOntologyChangeListener(OWLOntologyChangeListener) - Method in interface org.protege.editor.owl.model.OWLModelManager
Removes a previously added listener.
removeOntologyChangeListener(OWLOntologyChangeListener) - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
 
removeOptionsChangedListener(OptionsChangedListener) - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.options.OWLVizViewOptions
 
removeParent(DefaultGraphNode) - Method in class uk.ac.man.cs.mig.util.graph.model.impl.DefaultGraphNode
 
removePopupComponentListener(PopupComponentListener) - Method in class uk.ac.man.cs.mig.util.popup.PopupComponent
Removes a previously added listener.
removePrefixMapping(String) - Method in interface org.protege.editor.owl.ui.prefix.PrefixMapper
Removes a previously added value.
removePrefixMapping(String) - Method in class org.protege.editor.owl.ui.prefix.PrefixMapperImpl
 
RemovePrefixMappingAction - Class in org.protege.editor.owl.ui.prefix
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 22-Sep-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

RemovePrefixMappingAction(PrefixMapperTable) - Constructor for class org.protege.editor.owl.ui.prefix.RemovePrefixMappingAction
 
removePropertyChangeListener(PropertyChangeListener) - Method in class org.protege.editor.core.ui.wizard.WizardModel
 
removePropertyChangeListener(PropertyChangeListener) - Method in class org.protege.editor.owl.model.selection.axioms.AbstractAxiomSelectionStrategy
 
removePropertyChangeListener(PropertyChangeListener) - Method in interface org.protege.editor.owl.model.selection.axioms.AxiomSelectionStrategy
 
removePropertyChangeListener(PropertyChangeListener) - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.options.OWLVizProperties
Deprecated. Removes are previously added property change listener
removePropertyChangeListener(PropertyChangeListener) - Method in interface uk.ac.man.cs.mig.util.graph.controller.Controller
Removes a previously added PropertyChangeListener.
removePropertyChangeListener(PropertyChangeListener) - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultController
Removes a previously added PropertyChangeListener.
removeQuotes(String) - Static method in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.DotParser
 
RemoveRedundantImportsAction - Class in org.protege.editor.owl.ui.action
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 03-Oct-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

RemoveRedundantImportsAction() - Constructor for class org.protege.editor.owl.ui.action.RemoveRedundantImportsAction
 
removeRelation(X, X) - Method in class org.protege.editor.owl.model.hierarchy.roots.TerminalElementFinder
 
removeRendering(OWLEntity) - Method in interface org.protege.editor.owl.model.cache.OWLEntityRenderingCache
 
removeRendering(OWLEntity) - Method in class org.protege.editor.owl.model.cache.OWLEntityRenderingCacheImpl
 
removeRoot(OWLClass) - Method in class org.protege.editor.owl.model.hierarchy.cls.InferredOWLClassHierarchyProvider
 
removeSelectionListener(ChangeListener) - Method in class org.protege.editor.owl.ui.frame.OWLIndividualAnnotationValueEditor
 
removeSelectionListener(ChangeListener) - Method in class org.protege.editor.owl.ui.selector.AbstractSelectorPanel
 
removeSelectionListener(ChangeListener) - Method in class org.protege.editor.owl.ui.selector.OWLClassSelectorPanel
 
removeSelectionListener(ChangeListener) - Method in class org.protege.editor.owl.ui.selector.OWLDataPropertySelectorPanel
 
removeSelectionListener(ChangeListener) - Method in class org.protege.editor.owl.ui.selector.OWLDataTypeSelectorPanel
 
removeSelectionListener(ChangeListener) - Method in class org.protege.editor.owl.ui.selector.OWLIndividualSelectorPanel
 
removeSelectionListener(ChangeListener) - Method in class org.protege.editor.owl.ui.selector.OWLObjectPropertySelectorPanel
 
removeSelectionListener(OWLVizSelectionListener) - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizSelectionModel
 
removeSelectionProviderListener(SelectionProviderListener) - Method in class org.protege.editor.core.ui.util.AbstractSelectionProvider
 
removeSelectionProviderListener(SelectionProviderListener) - Method in interface org.protege.editor.core.ui.util.SelectionProvider
 
removeStatusChangedListener(InputVerificationStatusChangedListener) - Method in class org.protege.editor.core.ui.OpenFromURIPanel
 
removeStatusChangedListener(InputVerificationStatusChangedListener) - Method in interface org.protege.editor.core.ui.util.VerifiedInputEditor
 
removeStatusChangedListener(InputVerificationStatusChangedListener) - Method in class org.protege.editor.owl.ui.clsdescriptioneditor.ExpressionEditor
 
removeStatusChangedListener(InputVerificationStatusChangedListener) - Method in class org.protege.editor.owl.ui.CreateDefinedClassPanel
 
removeStatusChangedListener(InputVerificationStatusChangedListener) - Method in class org.protege.editor.owl.ui.editor.AbstractRestrictionCreatorPanel
 
removeStatusChangedListener(InputVerificationStatusChangedListener) - Method in class org.protege.editor.owl.ui.editor.OWLClassDescriptionEditor
 
removeStatusChangedListener(InputVerificationStatusChangedListener) - Method in class org.protege.editor.owl.ui.editor.OWLClassSelectorWrapper
 
removeStatusChangedListener(InputVerificationStatusChangedListener) - Method in class org.protege.editor.owl.ui.editor.OWLDescriptionExpressionEditor
 
removeStatusChangedListener(InputVerificationStatusChangedListener) - Method in class org.protege.editor.owl.ui.frame.OWLAnnotationEditor
 
removeStatusChangedListener(InputVerificationStatusChangedListener) - Method in class org.protege.editor.owl.ui.frame.OWLClassDescriptionSetEditor
 
removeStatusChangedListener(InputVerificationStatusChangedListener) - Method in class org.protege.editor.owl.ui.frame.OWLDataPropertyRelationshipEditor
 
removeStatusChangedListener(InputVerificationStatusChangedListener) - Method in class org.protege.editor.owl.ui.frame.OWLGeneralAxiomEditor
 
removeStatusChangedListener(InputVerificationStatusChangedListener) - Method in class org.protege.editor.owl.ui.frame.OWLObjectPropertyChainEditor
 
removeStatusChangedListener(InputVerificationStatusChangedListener) - Method in class org.protege.editor.owl.ui.frame.SWRLRuleEditor
 
removeStatusChangedListener(InputVerificationStatusChangedListener) - Method in class org.protege.editor.owl.ui.OWLEntityCreationPanel
 
removeStatusChangedListener(InputVerificationStatusChangedListener) - Method in class org.protege.editor.owl.ui.rename.RenameEntitiesPanel
 
removeStatusChangedListener(InputVerificationStatusChangedListener) - Method in class org.protege.editor.owl.ui.selector.AbstractSelectorPanel
 
removeTab(WorkspaceTab) - Method in class org.protege.editor.core.ui.workspace.TabbedWorkspace
Convenience method to remove a workspace tab.
removeTerminalElement(X) - Method in class org.protege.editor.owl.model.hierarchy.roots.TerminalElementFinder
 
removeThumbnailViewSourceListener(ThumbnailViewSourceListener) - Method in class uk.ac.man.cs.mig.util.graph.ui.GraphComponent
Removeds a previously added listener.
removeThumbnailViewSourceListener(ThumbnailViewSourceListener) - Method in interface uk.ac.man.cs.mig.util.graph.ui.ThumbnailViewSource
Removeds a previously added listener.
removeUndoManagerListener(UndoManagerListener) - Method in interface org.protege.editor.owl.model.history.HistoryManager
 
removeUndoManagerListener(UndoManagerListener) - Method in class org.protege.editor.owl.model.history.HistoryManagerImpl
 
removeVisualisedObjectManagerListener(VisualisedObjectManagerListener) - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultVisualisedObjectManager
Removes a VisualisedObjectManagerListener, which was previously added.
removeVisualisedObjectManagerListener(VisualisedObjectManagerListener) - Method in interface uk.ac.man.cs.mig.util.graph.controller.VisualisedObjectManager
Removes a VisualisedObjectManagaerListener, which was previously added.
removeWorkspace(Workspace) - Method in class org.protege.editor.core.ui.workspace.WorkspaceManager
 
RenameEntitiesBySearchAndReplaceAction - Class in org.protege.editor.owl.ui.action
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Jul 1, 2008

RenameEntitiesBySearchAndReplaceAction() - Constructor for class org.protege.editor.owl.ui.action.RenameEntitiesBySearchAndReplaceAction
 
RenameEntitiesPanel - Class in org.protege.editor.owl.ui.rename
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Jul 1, 2008

RenameEntitiesPanel(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.rename.RenameEntitiesPanel
 
RenameEntityAction - Class in org.protege.editor.owl.ui.action
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 21-Feb-2007

RenameEntityAction() - Constructor for class org.protege.editor.owl.ui.action.RenameEntityAction
 
RenameEntityPanel - Class in org.protege.editor.owl.ui.rename
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 14-Oct-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

RenameEntityPanel(OWLEditorKit, OWLEntity) - Constructor for class org.protege.editor.owl.ui.rename.RenameEntityPanel
 
render(OWLEntity) - Method in class org.protege.editor.owl.ui.renderer.OWLEntityAnnotationValueRenderer
 
render(OWLEntity) - Method in class org.protege.editor.owl.ui.renderer.OWLEntityQNameRenderer
 
render(OWLEntity) - Method in interface org.protege.editor.owl.ui.renderer.OWLEntityRenderer
 
render(OWLEntity) - Method in class org.protege.editor.owl.ui.renderer.OWLEntityRendererImpl
 
render(OWLEntity) - Method in interface org.protege.editor.owl.ui.renderer.OWLModelManagerEntityRenderer
 
render(OWLObject, OWLEntityRenderer) - Method in interface org.protege.editor.owl.ui.renderer.OWLObjectRenderer
 
render(OWLObject, OWLEntityRenderer) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererDLSyntax
 
render(OWLObject, OWLEntityRenderer) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
render(OWLEntity) - Method in class org.protege.editor.owl.ui.renderer.PrefixedOWLEntityAnnotationValueRenderer
 
RENDER_DOMAIN_AXIOMS_AS_GCIS - Static variable in class org.protege.editor.owl.ui.renderer.OWLRendererPreferences
 
RENDER_HYPERLINKS - Static variable in class org.protege.editor.owl.ui.renderer.OWLRendererPreferences
 
RENDER_PREFIXES - Static variable in class org.protege.editor.owl.ui.renderer.OWLRendererPreferences
 
renderEdge(Edge) - Method in class uk.ac.man.cs.mig.util.graph.outputrenderer.impl.DotOutputGraphRenderer
 
renderEdge(Graphics2D, Edge, boolean, boolean) - Method in interface uk.ac.man.cs.mig.util.graph.renderer.EdgeRenderer
Called to render an Edge.
renderEdge(Graphics2D, Edge, boolean, boolean) - Method in class uk.ac.man.cs.mig.util.graph.renderer.impl.DefaultEdgeRenderer
Called to render an Edge.
RENDERER_CLASS - Static variable in class org.protege.editor.owl.ui.renderer.OWLRendererPreferences
 
RendererPreferencesPanel - Class in org.protege.editor.owl.ui.renderer
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 08-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

RendererPreferencesPanel() - Constructor for class org.protege.editor.owl.ui.renderer.RendererPreferencesPanel
 
renderGraph(Graph, OutputStream) - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.renderer.DotSubGraphOutputRenderer
 
renderGraph(Graph, OutputStream) - Method in interface uk.ac.man.cs.mig.util.graph.outputrenderer.GraphOutputRenderer
 
renderGraph(Graph, OutputStream) - Method in class uk.ac.man.cs.mig.util.graph.outputrenderer.impl.DotOutputGraphRenderer
 
renderingChanged(OWLEntity, OWLEntityRenderer) - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
 
renderingChanged(OWLEntity, OWLEntityRenderer) - Method in interface org.protege.editor.owl.ui.renderer.OWLEntityRendererListener
 
RenderingEscapeUtils - Class in org.protege.editor.owl.ui.renderer
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 20-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

RenderingEscapeUtils() - Constructor for class org.protege.editor.owl.ui.renderer.RenderingEscapeUtils
 
renderNode(Graphics2D, Node, boolean, boolean) - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.renderer.OWLClsNodeRenderer
Generic shape renderer.
renderNode(Node) - Method in class uk.ac.man.cs.mig.util.graph.outputrenderer.impl.DotOutputGraphRenderer
 
renderNode(Graphics2D, Node, boolean, boolean) - Method in class uk.ac.man.cs.mig.util.graph.renderer.impl.DefaultNodeRenderer
Generic shape renderer.
renderNode(Graphics2D, Node, boolean, boolean) - Method in interface uk.ac.man.cs.mig.util.graph.renderer.NodeRenderer
Generic shape renderer.
renderOntology(OWLOntology, Writer) - Method in class org.protege.editor.owl.ui.view.AbstractOntologyRenderingViewComponent
 
renderOntology(OWLOntology, Writer) - Method in class org.protege.editor.owl.ui.view.ManchesterSyntaxRenderingViewComponent
 
renderOntology(OWLOntology, Writer) - Method in class org.protege.editor.owl.ui.view.OWLFunctionalSyntaxRenderingViewComponent
 
renderOntology(OWLOntology, Writer) - Method in class org.protege.editor.owl.ui.view.OWLXMLRenderingViewComponent
 
renderOntology(OWLOntology, Writer) - Method in class org.protege.editor.owl.ui.view.RDFXMLRenderingViewComponent
 
renderOntology(OWLOntology, Writer) - Method in class uk.ac.manchester.cs.factplusplus.protege.FaCTPlusPlusRenderingViewComponent
 
renderToken(String, int, StyledDocument) - Method in class org.protege.editor.owl.ui.renderer.OWLCellRenderer
 
replaceNames(String) - Method in class org.protege.editor.owl.ui.frame.ExplanationFrameSection
 
RepositoryTable - Class in org.protege.editor.core.ui
Author: Matthew Horridge
The University Of Manchester
Information Management Group
Date: 18-Oct-2008

RepositoryTable(OntologyRepository) - Constructor for class org.protege.editor.core.ui.RepositoryTable
 
RepositoryTableModel - Class in org.protege.editor.core.ui
Author: Matthew Horridge
The University Of Manchester
Information Management Group
Date: 18-Oct-2008

RepositoryTableModel(OntologyRepository) - Constructor for class org.protege.editor.core.ui.RepositoryTableModel
 
requestFocus() - Method in class org.protege.editor.core.ui.util.FilePathPanel
 
requestFocus() - Method in class org.protege.editor.core.ui.util.URLPanel
 
requestFocusInWindow() - Method in class org.protege.editor.core.ui.view.View
 
requestFocusInWindow() - Method in class org.protege.editor.owl.ui.clshierarchy.AbstractOWLClassHierarchyViewComponent
 
requestFocusInWindow() - Method in class org.protege.editor.owl.ui.selector.AbstractSelectorPanel
 
requestSelection() - Method in class org.protege.editor.core.ui.workspace.WorkspaceTab
 
requiresExplicitClassification() - Method in class org.protege.editor.owl.model.inference.NoOpReasonerFactory
 
requiresExplicitClassification() - Method in class org.protege.editor.owl.model.inference.ToldReasonerFactory
 
requiresExplicitClassification() - Method in class uk.ac.manchester.cs.factplusplus.protege.FaCTPlusPlusReasonerFactory
 
reset() - Method in class org.coode.dlquery.OWLDescriptionNodeQueryVisitor
 
reset() - Method in interface org.protege.editor.core.ui.util.Resettable
 
reset() - Method in class org.protege.editor.core.ui.workspace.WorkspaceViewsTab
 
reset(String) - Method in class org.protege.editor.core.ui.workspace.WorkspaceViewsTab
 
reset() - Method in class org.protege.editor.owl.model.util.CoveringAxiomFactory
 
reset() - Method in class org.protege.editor.owl.model.util.NestedIntersectionFlattener
 
reset() - Method in class org.protege.editor.owl.model.util.ObjectSomeRestrictionFillerExtractor
Resets the extractor and clears the set of fillers that have been accumulated over the course of a series of visits.
reset() - Method in class org.protege.editor.owl.model.util.RestrictedPropertyExtractor
 
reset() - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSection
 
reset() - Method in class org.protege.editor.owl.ui.renderer.OWLCellRenderer
 
reset() - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererDLSyntax
 
reset() - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
reset() - Method in class org.protege.editor.owl.ui.renderer.OWLRendererPreferences
 
reset() - Method in class org.protege.editor.owl.ui.view.OWLIndividualListViewComponent
 
reset() - Method in class org.protege.editor.owl.ui.view.SelectedEntityCardView
 
resetButtonStates() - Method in class org.protege.editor.core.ui.wizard.Wizard
 
resetButtonsToPanelRules() - Method in class org.protege.editor.core.ui.wizard.WizardController
 
resetIndents() - Method in class org.protege.editor.owl.ui.frame.ExplanationFrameSection
 
resetPath() - Method in interface uk.ac.man.cs.mig.util.graph.graph.Edge
Causes any information in the path that represents the Egde to be cleared, such as origin location and any control points.
resetPath() - Method in class uk.ac.man.cs.mig.util.graph.graph.impl.DefaultEdge
Causes any information in the path that represents the Egde to be cleared, such as origin location and any control points.
Resettable - Interface in org.protege.editor.core.ui.util
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 13-Aug-2007

ResolutionTypePanel - Class in org.protege.editor.owl.ui.ontology.imports.missing
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 17-Oct-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

ResolutionTypePanel(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.ontology.imports.missing.ResolutionTypePanel
 
resolve(OWLEntity, Set<OWLOntology>) - Method in interface org.protege.editor.owl.model.refactor.ontology.OntologyTargetResolver
 
restoreEditorKit(EditorKit) - Method in interface org.protege.editor.core.OntologyRepositoryEntry
This method will be called after loading to enable any changes or configuration of the editor kit to be reverted/rolled back.
restoreMetrics() - Method in class org.protege.editor.core.ui.workspace.WorkspaceFrame
 
RestrictedPropertyExtractor - Class in org.protege.editor.owl.model.util
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 14-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

A visitor that collects the properties that are restricted in OWLRestrictions.

RestrictedPropertyExtractor() - Constructor for class org.protege.editor.owl.model.util.RestrictedPropertyExtractor
 
RESULT_PANE_ID - Static variable in class org.protege.editor.core.ui.workspace.Workspace
 
ResultsList - Class in org.coode.dlquery
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 27-Feb-2007

ResultsList(OWLEditorKit) - Constructor for class org.coode.dlquery.ResultsList
 
revalidateGraph() - Method in class uk.ac.man.cs.mig.util.graph.ui.GraphView
Can be called to force the graph held by the view to update.
ReverseChangeGenerator - Class in org.protege.editor.owl.model.history
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 16-Jan-2007

ReverseChangeGenerator() - Constructor for class org.protege.editor.owl.model.history.ReverseChangeGenerator
 
revert() - Method in class org.protege.editor.owl.model.entity.IterativeAutoIDGenerator
 
revert() - Method in class org.protege.editor.owl.model.entity.PseudoRandomAutoIDGenerator
 
revert() - Method in interface org.protege.editor.owl.model.entity.Revertable
 
Revertable - Interface in org.protege.editor.owl.model.entity
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Sep 18, 2008

rewriteChange(OWLOntologyChange) - Method in class org.protege.editor.owl.model.description.anonymouscls.ADCRewriter
 
rewriteChanges(List<? extends OWLOntologyChange>) - Method in class org.protege.editor.owl.model.description.anonymouscls.ADCRewriter
 
ROLL_OVER_COLOR - Static variable in class org.protege.editor.core.ui.list.MListDeleteButton
 
ROLL_OVER_COLOR - Static variable in class org.protege.editor.owl.ui.framelist.AxiomAnnotationButton
 
ROOT_OBJECT - Static variable in class org.protege.editor.owl.ui.tree.OWLObjectTreeRootNode
 
ROW_MARGIN - Static variable in class org.protege.editor.core.ui.preferences.PreferencesPanelLayoutManager
 
run() - Method in class org.protege.editor.core.update.PluginInstaller
 
run() - Method in class org.protege.editor.core.update.UpdateChecker
 
RUN_ONCE - Static variable in class org.protege.editor.core.ProtegeApplication
 

S

save() - Method in class org.protege.editor.core.editorkit.RecentEditorKitManager
 
save() - Method in class org.protege.editor.core.ui.workspace.TabbedWorkspace
 
save() - Method in class org.protege.editor.core.ui.workspace.TabbedWorkspaceStateManager
 
save() - Method in class org.protege.editor.core.ui.workspace.Workspace
 
save() - Method in class org.protege.editor.core.ui.workspace.WorkspaceTab
 
save() - Method in class org.protege.editor.core.ui.workspace.WorkspaceViewsTab
 
save() - Method in interface org.protege.editor.owl.model.OWLModelManager
Performs a save operation.
save(OWLOntology) - Method in interface org.protege.editor.owl.model.OWLModelManager
Save only the ontology specified
save() - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
 
save(OWLOntology) - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
 
save() - Method in class org.protege.editor.owl.ui.prefix.PrefixMapperManager
 
SAVE_DIALOG_MODE - Static variable in class org.protege.editor.core.ui.util.FilePathPanel
 
SaveAction - Class in org.protege.editor.core.ui.action
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 26-May-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

SaveAction() - Constructor for class org.protege.editor.core.ui.action.SaveAction
 
saveAs() - Method in interface org.protege.editor.owl.model.OWLModelManager
Deprecated. - this method would require user interaction - use OWLEditorKit.saveAs() instead
saveAs() - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
 
SaveAsAction - Class in org.protege.editor.core.ui.action
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 13-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

SaveAsAction() - Constructor for class org.protege.editor.core.ui.action.SaveAsAction
 
SaveConfirmationPanel - Class in org.protege.editor.owl.ui
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: May 1, 2009

SaveConfirmationPanel(OWLEditorKit, Set<OWLOntology>) - Constructor for class org.protege.editor.owl.ui.SaveConfirmationPanel
 
saveEditorKit(EditorKit) - Method in class org.protege.editor.core.ProtegeManager
 
saveEditorKitAs(EditorKit) - Method in class org.protege.editor.core.ProtegeManager
 
SaveErrorHandler - Interface in org.protege.editor.owl.model
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: May 14, 2008

saveFile(Window, String, Set<String>, String) - Static method in class org.protege.editor.core.ui.util.UIUtil
 
saveFile(Window, String, Set<String>) - Static method in class org.protege.editor.core.ui.util.UIUtil
 
saveLibraries() - Method in class org.protege.editor.owl.model.library.OntologyLibraryLoader
 
saveMetrics() - Method in class org.protege.editor.core.ui.workspace.WorkspaceFrame
 
saveOWLFile(String) - Method in class org.protege.editor.owl.ui.UIHelper
 
SavePreferencesPanel - Class in org.protege.editor.owl.ui.preferences
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Apr 9, 2009

SavePreferencesPanel() - Constructor for class org.protege.editor.owl.ui.preferences.SavePreferencesPanel
 
saveProperties() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.options.OWLVizProperties
Deprecated. Saves the properties to file.
saveProperties() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizView
 
saveViews(Writer) - Method in class org.protege.editor.core.ui.view.ViewsPane
 
saveViews() - Method in class org.protege.editor.core.ui.view.ViewsPane
 
scrollObjectToVisible(Object) - Method in class uk.ac.man.cs.mig.util.graph.ui.GraphComponent
Scrolls the GraphView so that the Node representing the specified object becomes visible.
scrollObjectToVisible(Object) - Method in class uk.ac.man.cs.mig.util.graph.ui.GraphView
If the Graph contains a Node that represents the specified object, then the view is scrolled if necessary to ensure that the Node is visible.
scrollView(int, int) - Method in class uk.ac.man.cs.mig.util.graph.ui.GraphComponent
Allows the thumbnail view to request that the main view be scrolled by a given amount.
scrollView(int, int) - Method in interface uk.ac.man.cs.mig.util.graph.ui.ThumbnailViewSource
Allows the thumbnail view to request that the main view be scrolled by a given amount.
SEARCH_DELAY_KEY - Static variable in class org.protege.editor.owl.model.find.EntityFinderPreferences
 
SelectActionPanel - Class in org.protege.editor.owl.ui.ontology.wizard.move
Author: Matthew Horridge
The University Of Manchester
Information Management Group
Date: 23-Sep-2008

SelectActionPanel(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.ontology.wizard.move.SelectActionPanel
 
SelectAxiomsPanel - Class in org.protege.editor.owl.ui.ontology.wizard.move
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: May 30, 2008

SelectAxiomsPanel(FilteredAxiomsModel, String) - Constructor for class org.protege.editor.owl.ui.ontology.wizard.move.SelectAxiomsPanel
 
SelectedEntityCardView - Class in org.protege.editor.owl.ui.view
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 02-Mar-2007

SelectedEntityCardView() - Constructor for class org.protege.editor.owl.ui.view.SelectedEntityCardView
 
SelectedObjectPanel - Class in org.protege.editor.owl.ui
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 29-Oct-2007

A panel that displays information about selected objects (specifically entities and ontologies) - just an experimental hack really.
SelectedObjectPanel(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.SelectedObjectPanel
 
SelectedObjectViewComponent - Class in org.protege.editor.owl.ui.view
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 28-Oct-2007

SelectedObjectViewComponent() - Constructor for class org.protege.editor.owl.ui.view.SelectedObjectViewComponent
 
SelectedOWLClassAction - Class in org.protege.editor.owl.ui.action
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 03-Feb-2007

SelectedOWLClassAction() - Constructor for class org.protege.editor.owl.ui.action.SelectedOWLClassAction
 
SelectedOWLDataPropertyAction - Class in org.protege.editor.owl.ui.action
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 03-Feb-2007

SelectedOWLDataPropertyAction() - Constructor for class org.protege.editor.owl.ui.action.SelectedOWLDataPropertyAction
 
SelectedOWLEntityAction - Class in org.protege.editor.owl.ui.action
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 22-Feb-2007

A base class for actions which perform an action based on the selected entity.

SelectedOWLEntityAction() - Constructor for class org.protege.editor.owl.ui.action.SelectedOWLEntityAction
 
SelectedOWLEntityList - Class in org.protege.editor.owl.ui
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 08-Feb-2007

SelectedOWLEntityList(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.SelectedOWLEntityList
Constructs a JList with an empty model.
SelectedOWLObjectPropertyAction - Class in org.protege.editor.owl.ui.action
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 03-Feb-2007

SelectedOWLObjectPropertyAction() - Constructor for class org.protege.editor.owl.ui.action.SelectedOWLObjectPropertyAction
 
SelectedReasonerAction - Class in org.protege.editor.owl.ui.inference
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 19-May-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

SelectedReasonerAction() - Constructor for class org.protege.editor.owl.ui.inference.SelectedReasonerAction
 
SelectFormatPage - Class in uk.ac.man.cs.mig.coode.owlviz.ui.exportwizard
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Feb 25, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

SelectFormatPage() - Constructor for class uk.ac.man.cs.mig.coode.owlviz.ui.exportwizard.SelectFormatPage
 
SELECTION_BACKGROUND - Static variable in class org.protege.editor.owl.ui.renderer.OWLCellRenderer
 
SELECTION_FOREGROUND - Static variable in class org.protege.editor.owl.ui.renderer.OWLCellRenderer
 
selectionChanged(SelectionProvider) - Method in interface org.protege.editor.core.ui.util.SelectionProviderListener
 
selectionChanged() - Method in class org.protege.editor.owl.model.selection.FilteringOWLSelectionModelListener
 
selectionChanged() - Method in class org.protege.editor.owl.model.selection.OWLSelectionModelAdapter
 
selectionChanged() - Method in interface org.protege.editor.owl.model.selection.OWLSelectionModelListener
 
selectionChanged() - Method in class org.protege.editor.owl.ui.SelectedOWLEntityList
 
selectionChanged(OWLVizSelectionModel) - Method in interface uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizSelectionListener
 
selectionChanged(GraphSelectionModelEvent) - Method in interface uk.ac.man.cs.mig.util.graph.event.GraphSelectionModelListener
 
selectionListener - Variable in class uk.ac.man.cs.mig.util.graph.ui.GraphView
 
SelectionProvider - Interface in org.protege.editor.core.ui.util
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Mar 21, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

SelectionProviderListener - Interface in org.protege.editor.core.ui.util
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Mar 21, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

SelectKitPanel - Class in org.protege.editor.owl.ui.ontology.wizard.move
User: nickdrummond Date: May 20, 2008
SelectKitPanel(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.ontology.wizard.move.SelectKitPanel
 
selectObject(Object) - Method in class uk.ac.man.cs.mig.util.graph.ui.GraphComponent
 
SelectOntologiesPage - Class in org.protege.editor.owl.ui.ontology.wizard.merge
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 02-Jul-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

SelectOntologiesPage(OWLEditorKit, String) - Constructor for class org.protege.editor.owl.ui.ontology.wizard.merge.SelectOntologiesPage
 
selectPathForEvent(TreePath, MouseEvent) - Method in class org.protege.editor.core.ui.tree.ProtegeTreeUI
Messaged to update the selection based on a MouseEvent over a particular row.
SelectSignaturePanel - Class in org.protege.editor.owl.ui.ontology.wizard.move.byreference
Author: Matthew Horridge
The University Of Manchester
Information Management Group
Date: 23-Sep-2008

SelectSignaturePanel(MoveAxiomsByReferenceKit) - Constructor for class org.protege.editor.owl.ui.ontology.wizard.move.byreference.SelectSignaturePanel
 
SelectSourceOntologiesPanel - Class in org.protege.editor.owl.ui.ontology.wizard.move
Author: Matthew Horridge
The University Of Manchester
Information Management Group
Date: 11-Sep-2008

SelectSourceOntologiesPanel(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.ontology.wizard.move.SelectSourceOntologiesPanel
 
SelectTargetOntologyPage - Class in org.protege.editor.owl.ui.ontology.wizard.merge
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 02-Jul-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

SelectTargetOntologyPage(OWLEditorKit, String) - Constructor for class org.protege.editor.owl.ui.ontology.wizard.merge.SelectTargetOntologyPage
 
SelectTargetOntologyPanel - Class in org.protege.editor.owl.ui.ontology.wizard.move
Author: Matthew Horridge
The University Of Manchester
Information Management Group
Date: 19-Sep-2008

SelectTargetOntologyPanel(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.ontology.wizard.move.SelectTargetOntologyPanel
 
SelectTargetOntologyTypePanel - Class in org.protege.editor.owl.ui.ontology.wizard.move
Author: Matthew Horridge
The University Of Manchester
Information Management Group
Date: 23-Sep-2008

SelectTargetOntologyTypePanel(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.ontology.wizard.move.SelectTargetOntologyTypePanel
 
sendErrorReport(ErrorLog) - Method in interface org.protege.editor.core.ui.error.SendErrorReportHandler
 
sendErrorReport(ErrorLog) - Method in class org.protege.editor.owl.model.OWLWorkspace
 
SendErrorReportHandler - Interface in org.protege.editor.core.ui.error
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 28-Feb-2007

setActionListener(ActionListener) - Method in class org.protege.editor.core.ui.list.MListButton
 
setActiveOntologiesStrategy(OntologySelectionStrategy) - Method in interface org.protege.editor.owl.model.OWLModelManager
 
setActiveOntologiesStrategy(OntologySelectionStrategy) - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
 
setActiveOntology(OWLOntology) - Method in interface org.protege.editor.owl.model.OWLModelManager
 
setActiveOntology(OWLOntology) - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
 
setAddToTargetOntology(boolean) - Method in class org.protege.editor.owl.ui.ontology.wizard.move.MoveAxiomsWizard
 
setAllChildrenVisible(boolean) - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.VisualisedObjectWrapper
 
setAllParentsVisible(boolean) - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.VisualisedObjectWrapper
 
setAnnotation(OWLAnnotation) - Method in class org.protege.editor.owl.ui.frame.OWLAnnotationEditor
 
setAnnotationPresent(boolean) - Method in class org.protege.editor.owl.ui.framelist.AxiomAnnotationButton
 
setAnnotationRendererEnabled(boolean) - Method in class org.protege.editor.owl.ui.framelist.OWLFrameListRenderer
 
setAnnotations(List<URI>, Map<URI, List<String>>) - Method in class org.protege.editor.owl.ui.renderer.OWLRendererPreferences
 
setAntialiased(boolean) - Method in class uk.ac.man.cs.mig.coode.owlviz.export.DotExportFormat
If the export is a raster format it may support antialiasing.
setAntialiased(boolean) - Method in interface uk.ac.man.cs.mig.util.graph.export.ExportFormat
If the export is a raster format it may support antialiasing.
setAntialiased(boolean) - Method in class uk.ac.man.cs.mig.util.graph.export.impl.AbstractRasterFormat
If the export is a raster format it may support antialiasing.
setAntialiased(boolean) - Method in class uk.ac.man.cs.mig.util.graph.export.impl.AbstractVectorFormat
If the export is a raster format it may support antialiasing.
setArrowHead(int, int, int, int) - Method in interface uk.ac.man.cs.mig.util.graph.graph.Edge
Sets the Edge's arrowhead.
setArrowHead(int, int, int, int) - Method in class uk.ac.man.cs.mig.util.graph.graph.impl.DefaultEdge
 
setArrowTail(int, int, int, int) - Method in interface uk.ac.man.cs.mig.util.graph.graph.Edge
Sets the Edge's arrowtail
setArrowTail(int, int, int, int) - Method in class uk.ac.man.cs.mig.util.graph.graph.impl.DefaultEdge
Sets the Edge's arrowtail
setAuthor(String) - Method in class org.protege.editor.core.update.PluginInfo
 
setAutoExpansionChildLimit(int) - Method in class org.protege.editor.owl.ui.tree.OWLTreePreferences
 
setAutoExpansionDepthLimit(int) - Method in class org.protege.editor.owl.ui.tree.OWLTreePreferences
 
setAutoExpansionEnabled(boolean) - Method in class org.protege.editor.owl.ui.tree.OWLTreePreferences
 
setAutoIDDigitCount(int) - Static method in class org.protege.editor.owl.model.entity.EntityCreationPreferences
 
setAutoIDEnd(int) - Static method in class org.protege.editor.owl.model.entity.EntityCreationPreferences
 
setAutoIDGeneratorClass(Class<? extends AutoIDGenerator>) - Static method in class org.protege.editor.owl.model.entity.EntityCreationPreferences
 
setAutoIDStart(int) - Static method in class org.protege.editor.owl.model.entity.EntityCreationPreferences
 
setAutoUpdateEnabled(boolean) - Method in class org.protege.editor.core.update.PluginManager
 
setAxiom(OWLAxiomInstance) - Method in class org.protege.editor.owl.ui.axiom.AxiomAnnotationPanel
Annotations apply to a particular instance of an axiom.
setAxiom(OWLObjectPropertyChainSubPropertyAxiom) - Method in class org.protege.editor.owl.ui.frame.OWLObjectPropertyChainEditor
 
setAxioms(Set<Set<OWLAxiom>>, Set<OWLOntology>) - Method in class org.protege.editor.owl.ui.list.OWLAxiomList
 
setAxiomSelectionSyncronized(boolean) - Method in class org.protege.editor.owl.ui.framelist.OWLFrameList2
 
setAxiomType(AxiomType) - Method in class org.protege.editor.owl.ui.editor.AbstractOWLDescriptionEditor
 
setAxiomType(AxiomType) - Method in interface org.protege.editor.owl.ui.editor.OWLDescriptionEditor
Called before initialisation - the user should not have to deal with this - this allows an editor to implement different behaviours based on where the description is going
setBackButtonEnabled(boolean) - Method in class org.protege.editor.core.ui.wizard.Wizard
Mirrors the WizardModel method of the same name.
setBackgroundImage(String) - Method in class org.protege.editor.core.ui.wizard.AbstractWizardPanel
 
setBackgroundImage(Icon) - Method in class org.protege.editor.core.ui.wizard.AbstractWizardPanel
 
setBannerColor(Color) - Method in class org.protege.editor.core.ui.view.ViewBanner
Sets the background color of the header.
setBaseURI(URI) - Method in class org.protege.editor.owl.ui.ontology.OntologyPreferences
 
setBooleanProperty(String, boolean) - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.options.OWLVizProperties
Deprecated. Sets a boolean property
setBorder(Border) - Method in class org.protege.editor.owl.ui.clsdescriptioneditor.ExpressionEditor
 
setBottomComponent(JComponent) - Method in class org.protege.editor.core.ui.workspace.WorkspaceViewsTab
 
setBounds(Rectangle) - Method in class org.protege.editor.core.ui.list.MListButton
 
setButtonState(Wizard) - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.exportwizard.SelectFormatPage
Sets the button state on the Wizard which enables/disables the Next button depending upon whether a format is selected or not.
setButtonState() - Method in class uk.ac.man.cs.mig.util.wizard.Wizard
Refreshes the state of the Wizard buttons.
setCacheEditor(boolean) - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSection
 
setCancelButtonEnabled(boolean) - Method in class org.protege.editor.core.ui.wizard.Wizard
Mirrors the WizardModel method of the same name.
setCardinality(int) - Method in class org.protege.editor.owl.ui.editor.AbstractRestrictionCreatorPanel
 
setCellRenderer(ListCellRenderer) - Method in class org.protege.editor.core.ui.list.MList
 
setCellRenderer(ListCellRenderer) - Method in class org.protege.editor.core.ui.list.RemovableObjectList
 
setCheckDelay(int) - Method in class org.protege.editor.owl.ui.clsdescriptioneditor.ExpressionEditorPreferences
 
setCommentedOut(boolean) - Method in class org.protege.editor.owl.ui.renderer.OWLCellRenderer
 
setComponentState() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.options.UIOptionsPage
 
setComponentTransparency(Component) - Method in class org.protege.editor.core.ui.wizard.AbstractWizardPanel
 
setConstructs(List<DLExpressivityChecker.Construct>) - Method in class org.protege.editor.owl.ui.metrics.DLNamePanel
 
setContainingOntology(OWLOntology) - Method in class org.protege.editor.owl.ui.frame.OWLAxiomAnnotationsFrame
 
setContainingOntology(OWLOntology) - Method in class org.protege.editor.owl.ui.frame.OWLAxiomAnnotationsFrameSection
 
setContent(JComponent) - Method in class org.protege.editor.core.ui.workspace.Workspace
 
setContent(JComponent) - Method in class uk.ac.man.cs.mig.util.okcanceldialog.OKCancelDialog
Sets the content that the dialog displays.
setContent(JComponent) - Method in class uk.ac.man.cs.mig.util.popup.PopupComponent
Sets the content that the popup displays
setContentRenderer(ListCellRenderer) - Method in class org.protege.editor.core.ui.list.MList.MListCellRenderer
 
setControlState() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.exportwizard.SelectFormatPage
Sets the control state, which depends on the format selected, and the options for the selected format.
setCrossedOutEntities(Set<OWLEntity>) - Method in class org.protege.editor.owl.ui.framelist.OWLFrameList2
 
setCrossedOutEntities(Set<OWLEntity>) - Method in class org.protege.editor.owl.ui.framelist.OWLFrameListRenderer
 
setCrossedOutEntities(Set<OWLEntity>) - Method in class org.protege.editor.owl.ui.renderer.OWLCellRenderer
 
setCurrentFileDirectory(String) - Static method in class org.protege.editor.core.ui.util.UIUtil
 
setCurrentPage(String) - Method in class uk.ac.man.cs.mig.util.wizard.Wizard
Causes the specified page to be shown.
setCurrentPanel(Object) - Method in class org.protege.editor.core.ui.wizard.Wizard
Displays the panel identified by the object passed in.
setCurrentPopupPage(OWLObjectPopupPage) - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.popup.PopupManager
 
setCurrentReasonerFactoryId(String) - Method in interface org.protege.editor.owl.model.inference.OWLReasonerManager
Sets the current reasoner to be the reasoner specified by the id.
setCurrentReasonerFactoryId(String) - Method in class org.protege.editor.owl.model.inference.OWLReasonerManagerImpl
 
setData(List<O>, boolean) - Method in class org.protege.editor.core.ui.util.CheckTableModel
 
setDataPropertyAxiom(OWLPropertyAssertionAxiom<OWLDataPropertyExpression, OWLConstant>) - Method in class org.protege.editor.owl.ui.frame.OWLDataPropertyRelationshipEditor
 
setDebugStream(PrintStream) - Method in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.DotParserTokenManager
 
setDefaultBaseURI(URI) - Static method in class org.protege.editor.owl.model.entity.EntityCreationPreferences
 
setDefaultLocalBase() - Method in class org.protege.editor.owl.ui.ontology.wizard.create.PhysicalLocationPanel
 
setDefaultRenderer(TableCellRenderer) - Method in class org.protege.editor.core.ui.util.CheckTable
 
setDefaultSeparator(String) - Static method in class org.protege.editor.owl.model.entity.EntityCreationPreferences
 
setDefaultTrackerRadius(int) - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizPreferences
 
setDeleteFromOriginalOntology(boolean) - Method in class org.protege.editor.owl.ui.ontology.wizard.move.MoveAxiomsWizard
 
setDescription(OWLDescription) - Method in class org.protege.editor.owl.ui.editor.OWLClassSelectorWrapper
 
setDescription(OWLDescription) - Method in class org.protege.editor.owl.ui.editor.OWLDataRestrictionCreatorPanel
 
setDescription(OWLDescription) - Method in interface org.protege.editor.owl.ui.editor.OWLDescriptionEditor
 
setDescription(OWLDescription) - Method in class org.protege.editor.owl.ui.editor.OWLDescriptionExpressionEditor
 
setDescription(OWLDescription) - Method in class org.protege.editor.owl.ui.editor.OWLObjectRestrictionCreatorPanel
 
setDialogLocation() - Method in class uk.ac.man.cs.mig.util.okcanceldialog.OKCancelDialog
 
setDialogMode(int) - Method in class org.protege.editor.core.ui.util.FilePathPanel
 
setDirectory(String) - Method in class org.protege.common.log.ProtegeRotatingAppender
 
setDirty(OWLOntology) - Method in interface org.protege.editor.owl.model.OWLModelManager
Forces the system to believe that an ontology has been modified.
setDirty(OWLOntology) - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
Forces the system to believe that an ontology has been modified.
setDisjointClassesAxiomSymbol(String) - Method in class org.protege.editor.owl.ui.frame.ExplanationFrame
 
setDisplayAnonymousClasses(boolean) - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.options.OWLVizViewOptions
 
setDisplayDisjointClassIndicator(boolean) - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.options.OWLVizViewOptions
 
setDisplayIndividuals(boolean) - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.options.OWLVizViewOptions
 
setDisplayIsALabels(boolean) - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.options.OWLVizViewOptions
 
setDotProcessPath(String) - Method in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.DotLayoutEngineProperties
 
setDoubleProperty(String, double) - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.options.OWLVizProperties
Deprecated. Sets an integer property
setDragAndDropHandler(OWLTreeDragAndDropHandler<N>) - Method in class org.protege.editor.owl.ui.tree.OWLObjectTree
 
setDragOriginater(boolean) - Method in interface org.protege.editor.owl.ui.transfer.OWLObjectDragSource
 
setDragOriginater(boolean) - Method in class org.protege.editor.owl.ui.tree.OWLObjectTree
 
setDrawNodeSeperators(boolean) - Method in class org.protege.editor.owl.ui.tree.OWLLinkedObjectTree
 
setDropRow(int) - Method in class org.protege.editor.owl.ui.tree.OWLObjectTree
 
setEdgeAttribute(String, String, String, String) - Method in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.DotParameterSetter
Sets the attribute for a specified Edge.
setEdgeAttribute(String, String, String, String) - Static method in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.DotParser
 
setEdgeBrightness(double) - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.options.OWLVizViewOptions
 
setEdgeBrightness(double) - Static method in class uk.ac.man.cs.mig.util.graph.renderer.impl.DefaultEdgeRenderer
Sets the brightness (level of gray) of edges in the graph.
setEdgeFactory(EdgeFactory) - Method in interface uk.ac.man.cs.mig.util.graph.controller.Controller
Sets the factory used to produce Edges
setEdgeFactory(EdgeFactory) - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultController
Sets the factory used to produce Edges
setEdgeFactory(EdgeFactory) - Method in class uk.ac.man.cs.mig.util.graph.ui.GraphComponent
 
setEdgeLabelRenderer(EdgeLabelRenderer) - Method in interface uk.ac.man.cs.mig.util.graph.controller.Controller
Sets the renderer used to determine the labels for Edges.
setEdgeLabelRenderer(EdgeLabelRenderer) - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultController
Sets the renderer used to generate labels for Edges.
setEdgePath(Edge, String) - Method in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.DotParameterSetter
Sets the positions of a path origin, and the ctrl points of the path.
setEdgeRenderer(EdgeRenderer) - Method in interface uk.ac.man.cs.mig.util.graph.controller.Controller
Sets the renderer that is responsible for renderering Edges.
setEdgeRenderer(EdgeRenderer) - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultController
Sets the renderer that is responsible for renderering Edges.
setEdgeRenderer(EdgeRenderer) - Method in class uk.ac.man.cs.mig.util.graph.ui.GraphComponent
 
setEdgeRenderer(EdgeRenderer) - Method in class uk.ac.man.cs.mig.util.graph.ui.GraphView
Sets the renderer that is used to paoint Edges in the GraphView.
setEdgeRenderer(EdgeRenderer) - Method in class uk.ac.man.cs.mig.util.graph.ui.impl.DefaultGraphView
 
setEditedObject(Set<OWLDataProperty>) - Method in class org.protege.editor.owl.ui.frame.editor.OWLDataPropertySetEditor
 
setEditedObject(Set<OWLObjectProperty>) - Method in class org.protege.editor.owl.ui.frame.editor.OWLObjectPropertySetEditor
 
setEditedObject(Object) - Method in class org.protege.editor.owl.ui.frame.OWLAnnonymousIndividualAnnotationValueEditor
 
setEditedObject(O) - Method in interface org.protege.editor.owl.ui.frame.OWLAnnotationValueEditor
 
setEditedObject(OWLConstant) - Method in class org.protege.editor.owl.ui.frame.OWLConstantEditor
 
setEditedObject(OWLDataProperty) - Method in class org.protege.editor.owl.ui.frame.OWLDataPropertyEditor
 
setEditedObject(OWLDataRange) - Method in class org.protege.editor.owl.ui.frame.OWLDataRangeEditor
 
setEditedObject(OWLClassAxiom) - Method in class org.protege.editor.owl.ui.frame.OWLGeneralAxiomEditor
 
setEditedObject(Object) - Method in class org.protege.editor.owl.ui.frame.OWLIndividualAnnotationValueEditor
 
setEditedObject(OWLObjectProperty) - Method in class org.protege.editor.owl.ui.frame.OWLObjectPropertyEditor
 
setEditorKit(EditorKit) - Method in class org.protege.editor.core.platform.apple.ProtegeAppleApplication
 
setEditorKit(EditorKit) - Method in class org.protege.editor.core.ui.action.ProtegeAction
 
setEditorKitFactoryID(String) - Method in class org.protege.editor.core.editorkit.EditorKitDescriptor
 
setEnabled(boolean) - Method in class org.protege.editor.core.ui.util.FilePathPanel
 
setEnabled(boolean) - Method in class org.protege.editor.core.ui.view.ViewBanner
 
setEnabled(boolean) - Method in class org.protege.editor.core.ui.view.ViewBar
 
setEnabled(boolean) - Method in class org.protege.editor.owl.ui.OWLEntityCreationPanel
 
setEnabledPreferencesMenu(boolean) - Method in class org.protege.editor.core.platform.apple.AbstractAppleApplicationWrapper
 
setEntities(Set<O>) - Method in class org.protege.editor.owl.model.selection.axioms.EntityReferencingAxiomsStrategy
 
setEquivalentClassesAxiomSymbol(String) - Method in class org.protege.editor.owl.ui.frame.ExplanationFrame
 
setEquivalentObjects(Set<OWLObject>) - Method in class org.protege.editor.owl.ui.renderer.OWLCellRenderer
Sets equivalent objects for the object being rendered.
setErrorMessage(JTextComponent, Throwable) - Method in class org.protege.editor.owl.ui.error.ErrorPanel
 
setExplanation(OWLAxiom, Set<Set<OWLAxiom>>) - Method in class org.protege.editor.owl.ui.frame.ExplanationFrame
 
setExplanation(OWLAxiom, Set<Set<OWLAxiom>>) - Method in class org.protege.editor.owl.ui.view.ExplanationResultsViewComponent
 
setExpressionObject(O) - Method in class org.protege.editor.owl.ui.clsdescriptioneditor.ExpressionEditor
 
setFiller(F) - Method in class org.protege.editor.owl.ui.editor.AbstractRestrictionCreatorPanel
 
setFilterActive(UsageFilter, boolean) - Method in class org.protege.editor.owl.ui.usage.UsagePreferences
 
setFilteredAxioms(Set<OWLAxiom>) - Method in class org.protege.editor.owl.ui.ontology.wizard.move.byannotation.MoveAnnotationAxiomsByURIKit
 
setFilteredAxioms(Set<OWLAxiom>) - Method in class org.protege.editor.owl.ui.ontology.wizard.move.bytype.MoveAxiomsByTypeKit
 
setFilteredAxioms(Set<OWLAxiom>) - Method in interface org.protege.editor.owl.ui.ontology.wizard.move.FilteredAxiomsModel
 
setFinishButtonLabel(String) - Method in class uk.ac.man.cs.mig.util.wizard.Wizard
Sets the label displayed on the button that causes the next page to be shown when the Wizard is on the last page.
setFinished() - Method in class org.protege.editor.owl.ui.inference.ReasonerProgressUI
 
setFireEvents(boolean) - Method in class org.protege.editor.owl.model.hierarchy.AbstractOWLObjectHierarchyProvider
 
setFocusedDescription(OWLDescription) - Method in class org.protege.editor.owl.ui.OWLDescriptionComparator
 
setFocusedEntity(OWLEntity) - Method in class org.protege.editor.owl.ui.renderer.OWLCellRenderer
 
setFocusedEntityIsSelectedEntity(boolean) - Method in class org.protege.editor.owl.ui.renderer.OWLCellRenderer
 
setFocusedObject(OWLObject) - Method in interface org.protege.editor.owl.ui.renderer.OWLObjectRenderer
 
setFocusedObject(OWLObject) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererDLSyntax
 
setFocusedObject(OWLObject) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
setFontName(String) - Method in class org.protege.editor.owl.ui.renderer.OWLRendererPreferences
 
setFontSize(int) - Method in class org.protege.editor.owl.ui.renderer.OWLRendererPreferences
 
setForceReadOnlyRendering(boolean) - Method in class org.protege.editor.owl.ui.renderer.OWLCellRenderer
 
setForceReset(boolean) - Method in class org.protege.editor.core.ui.view.ViewsPaneMemento
 
setFragmentAutoGenerated(boolean) - Static method in class org.protege.editor.owl.model.entity.EntityCreationPreferences
 
setGenerateIDLabel(boolean) - Static method in class org.protege.editor.owl.model.entity.EntityCreationPreferences
 
setGenerateNameLabel(boolean) - Static method in class org.protege.editor.owl.model.entity.EntityCreationPreferences
 
setGraph(Graph) - Method in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.DotParameterSetter
Sets the Graph whose Nodes and Edges the attributes will apply to.
setGraph() - Method in class uk.ac.man.cs.mig.util.graph.ui.GraphView
Utility method to cache Nodes and Edges.
setGraphAttribute(String, String) - Method in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.DotParameterSetter
Sets an attribute for the Graph.
setGraphAttribute(String, String) - Static method in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.DotParser
 
setGraphFactory(GraphFactory) - Method in interface uk.ac.man.cs.mig.util.graph.controller.Controller
Sets the factory used to produce Graphs
setGraphFactory(GraphFactory) - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultController
Sets the factory used to produce Graphs
setGraphFactory(GraphFactory) - Method in class uk.ac.man.cs.mig.util.graph.ui.GraphComponent
 
setGraphGenerator(GraphGenerator) - Method in interface uk.ac.man.cs.mig.util.graph.controller.Controller
Sets the GraphGenerator, which is used to create a Graph that is based on the contents held by the VisualisedObjectManager
setGraphGenerator(GraphGenerator) - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultController
Sets the GraphGenerator, which is used to create a Graph that is based on the contents held by the VisualisedObjectManager.
setGraphLayoutEngine(GraphLayoutEngine) - Method in interface uk.ac.man.cs.mig.util.graph.controller.Controller
Sets the GraphLayoutEngine, which is used to size and position Nodes and Edges
setGraphLayoutEngine(GraphLayoutEngine) - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultController
Sets the GraphLayoutEngine, which is used to size and position Nodes and Edges
setGraphModel(GraphModel) - Method in interface uk.ac.man.cs.mig.util.graph.controller.Controller
Sets the GraphModel, which is an interface to the underlying data that is represented by the Graph
setGraphModel(GraphModel) - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultController
Sets the GraphModel, which is an interface to the underlying data that is represented by the Graph
setGraphModel(GraphModel) - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultVisualisedObjectManager
Sets the GraphModel that the visualised object manager is responsible for.
setGraphModel(GraphModel) - Method in interface uk.ac.man.cs.mig.util.graph.controller.VisualisedObjectManager
Sets the GraphModel that the VisualisedObject manager is responsible for.
setGraphModel(GraphModel) - Method in class uk.ac.man.cs.mig.util.graph.ui.GraphComponent
 
setGraphOutputRenderer(GraphOutputRenderer) - Method in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.DotGraphLayoutEngine
 
setGraphSelectionModel(GraphSelectionModel) - Method in interface uk.ac.man.cs.mig.util.graph.controller.Controller
Sets the selection model that is responsible for managing user interaction in the form of <Node and Edge selections.
setGraphSelectionModel(GraphSelectionModel) - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultController
Sets the selection model that is responsible for managing user interaction in the form of Node and Edge selections.
setGraphSelectionModel(GraphSelectionModel) - Method in class uk.ac.man.cs.mig.util.graph.ui.GraphComponent
 
setGraphView(GraphView) - Method in interface uk.ac.man.cs.mig.util.graph.controller.Controller
Sets the view that is used paint the Graph on.
setGraphView(GraphView) - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultController
Sets the view that is used paint the Graph on.
setGroupByNameSpace(boolean) - Static method in class uk.ac.man.cs.mig.coode.owlviz.ui.renderer.DotSubGraphOutputRenderer
 
setGroupClassesByNameSpace(boolean) - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.options.OWLVizViewOptions
 
setHandler(OWLFrameSectionRowObjectEditorHandler<E>) - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSectionRowObjectEditor
 
setHandler(OWLFrameSectionRowObjectEditorHandler<O>) - Method in interface org.protege.editor.owl.ui.frame.OWLFrameSectionRowObjectEditor
 
setHandler(OWLFrameSectionRowObjectEditorHandler<OWLImportsDeclaration>) - Method in class org.protege.editor.owl.ui.frame.OWLImportsDeclarationEditor
 
setHeaderBackgroundColor(Color) - Method in class org.protege.editor.core.ui.view.View
 
setHeaderText(String) - Method in class org.protege.editor.core.ui.view.View
Sets the text on the view header.
setHeaderText(String) - Method in class org.protege.editor.core.ui.view.ViewComponent
 
setHiddenAnnotationURI(URI, boolean) - Method in class org.protege.editor.owl.model.OWLWorkspace
 
setHiddenAnnotationURIs(Set<URI>) - Method in class org.protege.editor.owl.model.OWLWorkspace
 
setHiddenAnnotationURIs(Set<URI>) - Static method in class org.protege.editor.owl.ui.preferences.AnnotationPreferences
 
setHighlightActiveOntologyStatements(boolean) - Method in class org.protege.editor.owl.ui.renderer.OWLRendererPreferences
 
setHighlightChangedEntities(boolean) - Method in class org.protege.editor.owl.ui.renderer.OWLRendererPreferences
 
setHighlightKeywords(boolean) - Method in class org.protege.editor.owl.ui.framelist.OWLFrameListRenderer
 
setHighlightKeywords(boolean) - Method in class org.protege.editor.owl.ui.renderer.OWLCellRenderer
 
setHighlightKeyWords(boolean) - Method in class org.protege.editor.owl.ui.renderer.OWLRendererPreferences
 
setHighlightKeywords(boolean) - Method in class org.protege.editor.owl.ui.tree.OWLModelManagerTree
 
setHighlightUnsatifiableClasses(boolean) - Method in class org.protege.editor.owl.ui.framelist.OWLFrameList2
 
setHighlightUnsatisfiableClasses(boolean) - Method in class org.protege.editor.owl.ui.framelist.OWLFrameListRenderer
 
setHighlightUnsatisfiableClasses(boolean) - Method in class org.protege.editor.owl.ui.renderer.OWLCellRenderer
 
setHighlightUnsatisfiableProperties(boolean) - Method in class org.protege.editor.owl.ui.framelist.OWLFrameList2
 
setHighlightUnsatisfiableProperties(boolean) - Method in class org.protege.editor.owl.ui.framelist.OWLFrameListRenderer
 
setHighlightUnsatisfiableProperties(boolean) - Method in class org.protege.editor.owl.ui.renderer.OWLCellRenderer
 
setHoverColor(Color) - Method in class org.protege.editor.core.ui.util.LinkLabel
 
setIconObject(OWLObject) - Method in class org.protege.editor.owl.ui.renderer.OWLCellRenderer
 
setImportVerifier(ImportVerifier) - Method in class org.protege.editor.owl.ui.ontology.imports.wizard.OntologyImportWizard
 
setIncludeDay(boolean) - Method in class org.protege.editor.owl.ui.ontology.OntologyPreferences
 
setIncludeImports(boolean) - Method in interface org.protege.editor.owl.model.OWLModelManager
 
setIncludeImports(boolean) - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
Deprecated. use setActiveOntologiesStrategy with either ActiveOntologySelectionStrategy or ImportsClosureOntologySelectionStrategy
setIncludeMonth(boolean) - Method in class org.protege.editor.owl.ui.ontology.OntologyPreferences
 
setIncludeYear(boolean) - Method in class org.protege.editor.owl.ui.ontology.OntologyPreferences
 
setIndeterminate(boolean) - Method in class org.protege.editor.owl.ui.inference.ReasonerProgressUI
 
setInferred(boolean) - Method in class org.protege.editor.owl.ui.renderer.OWLCellRenderer
Specifies whether or not this row displays inferred information (the default value is false)
setInstructions(String) - Method in class org.protege.editor.core.ui.wizard.AbstractWizardPanel
 
setIntProperty(String, int) - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.options.OWLVizProperties
Deprecated. Sets an integer property
setLabel(String) - Method in class org.protege.editor.core.update.PluginInfo
 
setLabel(String) - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSection
 
setLabelDescriptorClass(Class<? extends LabelDescriptor>) - Static method in class org.protege.editor.owl.model.entity.EntityCreationPreferences
 
setLabelPosition(int, int) - Method in interface uk.ac.man.cs.mig.util.graph.graph.Edge
Sets the Edge's label position.
setLabelPosition(int, int) - Method in class uk.ac.man.cs.mig.util.graph.graph.impl.DefaultEdge
Sets the Edge's label position.
setLayoutDirection(int) - Method in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.DotGraphLayoutEngine
Sets the direction of the layout.
setLayoutDirection(int) - Method in interface uk.ac.man.cs.mig.util.graph.layout.GraphLayoutEngine
Sets the direction of the layout.
setLayoutDirection(int) - Method in class uk.ac.man.cs.mig.util.graph.layout.impl.DefaultGraphLayoutEngine
Sets the direction of the layout.
setLayoutOrientation(int) - Method in class org.protege.editor.owl.ui.framelist.OWLFrameList2
 
setLeftComponent(JComponent) - Method in class org.protege.editor.core.ui.workspace.WorkspaceViewsTab
 
setLeftNode(OWLDescriptionNode) - Method in class org.protege.editor.owl.model.description.OWLDescriptionLeafNode
 
setLicense(String) - Method in class org.protege.editor.core.update.PluginInfo
 
setLinkColor(Color) - Method in class org.protege.editor.core.ui.util.LinkLabel
 
setLinkedObject(OWLObject) - Method in class org.coode.dlquery.ResultsList
 
setLinkedObject(OWLObject) - Method in class org.protege.editor.owl.ui.framelist.OWLFrameList2
 
setLinkedObject(OWLObject) - Method in class org.protege.editor.owl.ui.list.OWLLinkedObjectList
 
setLinkedObject(OWLObject) - Method in interface org.protege.editor.owl.ui.renderer.LinkedObjectComponent
Gets the cell object that the mouse is over
setLinkedObject(OWLObject) - Method in class org.protege.editor.owl.ui.renderer.LinkedObjectComponentMediator
 
setLinkedObject(OWLObject) - Method in class org.protege.editor.owl.ui.table.BasicLinkedOWLObjectTable
 
setLinkedObject(OWLObject) - Method in class org.protege.editor.owl.ui.tree.OWLLinkedObjectTree
 
setListData(Vector<?>) - Method in class org.protege.editor.core.ui.list.RemovableObjectList
 
setListData(Object[]) - Method in class org.protege.editor.core.ui.list.RemovableObjectList
 
setLoaded(boolean) - Method in class org.protege.editor.owl.ui.tree.OWLObjectTreeNode
 
setLoadErrorHandler(OntologyLoadErrorHandler) - Method in interface org.protege.editor.owl.model.OWLModelManager
 
setLoadErrorHandler(OntologyLoadErrorHandler) - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
 
setMap(Map<String, String>) - Method in class org.protege.editor.owl.model.library.OntologyLibraryMemento
 
setMarginImage(Icon) - Method in class org.protege.editor.core.ui.wizard.AbstractWizardPanel
 
setMessage(String) - Method in class org.protege.editor.owl.ui.inference.ReasonerProgressUI
 
setMessage(String) - Method in class org.protege.editor.owl.ui.OntologyFormatPanel
 
setMissingImportHandler(MissingImportHandler) - Method in class org.protege.editor.owl.model.io.UserResolvedURIMapper
 
setMissingImportHandler(MissingImportHandler) - Method in interface org.protege.editor.owl.model.OWLModelManager
 
setMissingImportHandler(MissingImportHandler) - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
 
setModal(boolean) - Method in class org.protege.editor.core.ui.wizard.Wizard
Sets the modality of the generated javax.swing.JDialog.
setModel(ListModel) - Method in class org.protege.editor.core.ui.list.RemovableObjectList
 
setMultipleSelectionEnabled(boolean) - Method in class org.protege.editor.owl.ui.selector.OWLOntologySelectorPanel
 
setNameLabelLang(String) - Static method in class org.protege.editor.owl.model.entity.EntityCreationPreferences
 
setNameLabelURI(URI) - Static method in class org.protege.editor.owl.model.entity.EntityCreationPreferences
 
setNextButtonEnabled(boolean) - Method in class uk.ac.man.cs.mig.util.wizard.Wizard
Enables/Disables the button that causes the Wizard to display the next page.
setNextButtonLabel(String) - Method in class uk.ac.man.cs.mig.util.wizard.Wizard
Sets the label displayed on the button that causes the next page to be displayed.
setNextFinishButtonEnabled(boolean) - Method in class org.protege.editor.core.ui.wizard.Wizard
Mirrors the WizardModel method of the same name.
setNextFinishButtonIcon(Icon) - Method in class org.protege.editor.core.ui.wizard.WizardModel
 
setNodeAttribute(String, String, String) - Method in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.DotParameterSetter
Sets the attribute for a specified Node.
setNodeAttribute(String, String, String) - Static method in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.DotParser
 
setNodeFactory(NodeFactory) - Method in interface uk.ac.man.cs.mig.util.graph.controller.Controller
Sets the factory used to produce Nodes.
setNodeFactory(NodeFactory) - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultController
Sets the factory used to produce Nodes.
setNodeFactory(NodeFactory) - Method in class uk.ac.man.cs.mig.util.graph.ui.GraphComponent
 
setNodeLabelRenderer(NodeLabelRenderer) - Method in interface uk.ac.man.cs.mig.util.graph.controller.Controller
Sets the renderer that is responsible for getting the label for a given Node.
setNodeLabelRenderer(NodeLabelRenderer) - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultController
Sets the renderer that is responsible for getting the label for a given Node.
setNodeLabelRenderer(NodeLabelRenderer) - Method in class uk.ac.man.cs.mig.util.graph.ui.GraphComponent
 
setNodeRenderer(NodeRenderer) - Method in interface uk.ac.man.cs.mig.util.graph.controller.Controller
Sets the renderer that is responsible for drawing Nodes
setNodeRenderer(NodeRenderer) - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultController
Sets the renderer that is responsible for drawing Nodes
setNodeRenderer(NodeRenderer) - Method in class uk.ac.man.cs.mig.util.graph.ui.GraphComponent
 
setNodeRenderer(NodeRenderer) - Method in class uk.ac.man.cs.mig.util.graph.ui.GraphView
Sets the renderer that is used to paint Nodes in the GraphView.
setNodeRenderer(NodeRenderer) - Method in class uk.ac.man.cs.mig.util.graph.ui.impl.DefaultGraphView
 
setObfuscateNames(boolean) - Method in class org.protege.editor.owl.ui.frame.ExplanationFrame
 
setObject(SWRLRule) - Method in class org.protege.editor.owl.ui.frame.SWRLRuleEditor
 
setObjectPropertyAxiom(OWLPropertyAssertionAxiom<OWLObjectPropertyExpression, OWLIndividual>) - Method in class org.protege.editor.owl.ui.frame.OWLObjectPropertyIndividualPairEditor
 
setObjects(Collection<O>) - Method in class org.protege.editor.core.ui.list.RemovableObjectList
 
setOKEnabled(boolean) - Method in class org.protege.editor.core.ui.util.VerifyingOptionPane
 
setOntologies(Set<OWLOntology>) - Method in class org.protege.editor.owl.model.hierarchy.AbstractOWLPropertyHierarchyProvider
Sets the ontologies that this hierarchy provider should use in order to determine the hierarchy.
setOntologies(Set<OWLOntology>) - Method in class org.protege.editor.owl.model.hierarchy.AssertedClassHierarchyProvider
Deprecated. Sets the ontologies that this hierarchy provider should use in order to determine the hierarchy.
setOntologies(Set<OWLOntology>) - Method in class org.protege.editor.owl.model.hierarchy.AssertedClassHierarchyProvider2
Sets the ontologies that this hierarchy provider should use in order to determine the hierarchy.
setOntologies(Set<OWLOntology>) - Method in class org.protege.editor.owl.model.hierarchy.AssertedSuperClassHierarchyProvider
Sets the ontologies that this hierarchy provider should use in order to determine the hierarchy.
setOntologies(Set<OWLOntology>) - Method in class org.protege.editor.owl.model.hierarchy.cls.InferredOWLClassHierarchyProvider
Sets the ontologies that this hierarchy provider should use in order to determine the hierarchy.
setOntologies(Set<OWLOntology>) - Method in class org.protege.editor.owl.model.hierarchy.cls.InferredSuperClassHierarchyProvider
Sets the ontologies that this hierarchy provider should use in order to determine the hierarchy.
setOntologies(Set<OWLOntology>) - Method in class org.protege.editor.owl.model.hierarchy.IndividualsByInferredTypeHierarchyProvider
 
setOntologies(Set<OWLOntology>) - Method in class org.protege.editor.owl.model.hierarchy.IndividualsByTypeHierarchyProvider
 
setOntologies(Set<OWLOntology>) - Method in interface org.protege.editor.owl.model.hierarchy.OWLObjectHierarchyProvider
Sets the ontologies that this hierarchy provider should use in order to determine the hierarchy.
setOntologies(Set<OWLOntology>) - Method in class org.protege.editor.owl.model.hierarchy.OWLOntologyHierarchyProvider
 
setOntologies(Set<OWLOntology>) - Method in interface org.protege.editor.owl.model.hierarchy.OWLOntologyObjectHierarchyProvider
 
setOntologies(Set<OWLOntology>) - Method in class org.protege.editor.owl.ui.ontology.location.PhysicalLocationPanel
 
setOntologies(Set<OWLOntology>) - Method in class org.protege.editor.owl.ui.selector.OWLIndividualSelectorPanel
 
setOntology(OWLOntology) - Method in class org.protege.editor.owl.ui.OWLOntologyDisplayPanel
 
setOntology(OWLOntology) - Method in class org.protege.editor.owl.ui.renderer.OWLAnnotationCellRenderer
 
setOntology(OWLOntology) - Method in class org.protege.editor.owl.ui.renderer.OWLCellRenderer
 
setOntologyResolver(OntologyTargetResolver) - Method in class org.protege.editor.owl.model.refactor.ontology.ConvertEntityURIsToIdentifierPattern
 
setOpaque(boolean) - Method in class org.protege.editor.owl.ui.renderer.OWLCellRenderer
 
SetOptionsCommand - Class in uk.ac.man.cs.mig.coode.owlviz.command
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Mar 2, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

SetOptionsCommand(OWLVizViewI, OptionsDialog) - Constructor for class uk.ac.man.cs.mig.coode.owlviz.command.SetOptionsCommand
 
setOWLDescription(OWLDescription) - Method in class org.coode.dlquery.ResultsList
 
setOWLEntity(OWLEntity) - Method in class org.protege.editor.owl.ui.usage.UsageByEntityTreeModel
 
setOWLEntity(OWLEntity) - Method in class org.protege.editor.owl.ui.usage.UsagePanel
 
setOWLEntity(OWLEntity) - Method in class org.protege.editor.owl.ui.usage.UsageTree
 
setOWLEntity(OWLEntity) - Method in interface org.protege.editor.owl.ui.usage.UsageTreeModel
 
setOWLEntityFactory(OWLEntityFactory) - Method in interface org.protege.editor.owl.model.OWLModelManager
 
setOWLEntityFactory(OWLEntityFactory) - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
 
setOWLEntityRenderer(OWLModelManagerEntityRenderer) - Method in interface org.protege.editor.owl.model.OWLModelManager
 
setOWLEntityRenderer(OWLModelManagerEntityRenderer) - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
 
setOWLIconProvider(OWLIconProvider) - Method in class org.protege.editor.owl.model.OWLWorkspace
 
setOWLModelManager(OWLModelManager) - Method in interface org.protege.editor.owl.model.cache.OWLEntityRenderingCache
 
setOWLModelManager(OWLModelManager) - Method in class org.protege.editor.owl.model.cache.OWLEntityRenderingCacheImpl
 
setOWLModelManager(OWLModelManager) - Method in class org.protege.editor.owl.ui.metrics.Metric
 
setOWLObject(R) - Method in class org.protege.editor.owl.ui.framelist.OWLFrameListComponent
 
setOWLObjectComparator(Comparator<N>) - Method in class org.protege.editor.owl.ui.tree.OWLObjectTree
Sets the comparator that is used to order sibling tree nodes.
setPages(WizardPage[]) - Method in class uk.ac.man.cs.mig.util.wizard.Wizard
Sets the pages that the Wizard should use.
setPath(String) - Method in class org.protege.editor.core.ui.util.FilePathPanel
 
setPathOrigin(int, int) - Method in interface uk.ac.man.cs.mig.util.graph.graph.Edge
Sets the location of the start of the path that represents the Edge.
setPathOrigin(int, int) - Method in class uk.ac.man.cs.mig.util.graph.graph.impl.DefaultEdge
Sets the location of the start of the path that represents the Edge.
setPhysicalURI(OWLOntology, URI) - Method in interface org.protege.editor.owl.model.OWLModelManager
 
setPhysicalURI(OWLOntology, URI) - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
 
setPinned(boolean) - Method in class org.protege.editor.core.ui.view.View
 
setPinned(boolean) - Method in class org.protege.editor.core.ui.view.ViewBanner
 
setPluginDescriptor(Bundle) - Method in class org.protege.editor.core.update.PluginInfo
 
setPluginRegistryLocation(URL) - Method in class org.protege.editor.core.update.PluginManager
 
setPopupProvider(PopupProvider) - Method in class uk.ac.man.cs.mig.util.graph.ui.GraphComponent
 
setPopupProvider(PopupProvider) - Method in class uk.ac.man.cs.mig.util.graph.ui.GraphView
Sets the PopupProvider, which supplies content to display a toolTip style popup when the mouse hovers over a Node in the view.
setPopupProvider(PopupProvider) - Method in class uk.ac.man.cs.mig.util.graph.ui.impl.DefaultGraphView
Sets the provider responsible for providing a popup
setPosition(int, int) - Method in class uk.ac.man.cs.mig.util.graph.graph.impl.DefaultNode
Sets the (x,y) position of the Node.
setPosition(int, int) - Method in class uk.ac.man.cs.mig.util.graph.graph.impl.EllipticalNode
Sets the (x,y) position of the Node.
setPosition(int, int) - Method in class uk.ac.man.cs.mig.util.graph.graph.impl.TriangularNode
Sets the (x,y) position of the Node.
setPosition(int, int) - Method in interface uk.ac.man.cs.mig.util.graph.graph.Node
Sets the (x,y) position of the Node.
setPreferredWidth(int) - Method in class org.protege.editor.owl.ui.renderer.OWLCellRenderer
 
setPrefix(String) - Static method in class org.protege.editor.owl.model.entity.EntityCreationPreferences
 
setPrefixes(Map<String, String>) - Method in class org.protege.editor.owl.ui.prefix.PrefixMapperManager
 
setPrevButtonEnabled(boolean) - Method in class uk.ac.man.cs.mig.util.wizard.Wizard
Enables/Disbales the button that causes the Wizard to display the previous page.
setPrevButtonLabel(String) - Method in class uk.ac.man.cs.mig.util.wizard.Wizard
Sets the label displayed on the button that causes the previous page to be displayed.
setProfile(OWLProfile) - Method in class org.protege.editor.owl.ui.ontology.wizard.move.byprofile.MoveAxiomsByProfileKit
 
setProgress(long) - Method in class org.protege.editor.owl.ui.inference.ReasonerProgressUI
 
setProgressIndeterminate(boolean) - Method in class org.protege.editor.owl.ui.inference.ReasonerProgressUI
 
setProgressMonitor(ProgressMonitor) - Method in class uk.ac.manchester.cs.factplusplus.protege.FaCTPlusPlusReasonerWrapper
 
setProperty(P) - Method in class org.protege.editor.owl.ui.editor.AbstractRestrictionCreatorPanel
 
setProperty(String, String) - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.options.OWLVizProperties
Deprecated. Sets the value for a property.
setRankSpacing(double) - Method in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.DotLayoutEngineProperties
 
setReadmeURI(URL) - Method in class org.protege.editor.core.update.PluginInfo
 
setReasoner(OWLReasoner) - Method in class org.protege.editor.owl.model.hierarchy.cls.InferredSuperClassHierarchyProvider
 
setReasoner(OWLReasoner) - Method in class org.protege.editor.owl.model.hierarchy.IndividualsByInferredTypeHierarchyProvider
 
setReasonerExceptionHandler(OWLReasonerExceptionHandler) - Method in interface org.protege.editor.owl.model.inference.OWLReasonerManager
 
setReasonerExceptionHandler(OWLReasonerExceptionHandler) - Method in class org.protege.editor.owl.model.inference.OWLReasonerManagerImpl
 
setReasonerProgressMonitor(ProgressMonitor) - Method in interface org.protege.editor.owl.model.inference.OWLReasonerManager
 
setReasonerProgressMonitor(ProgressMonitor) - Method in class org.protege.editor.owl.model.inference.OWLReasonerManagerImpl
 
setRelativeFile(String) - Method in class org.protege.common.log.ProtegeRotatingAppender
 
setReloadFlag(boolean) - Method in class org.protege.editor.owl.ui.error.OntologyLoadErrorHandlerUI
 
setRenderDomainAxiomsAsGCIs(boolean) - Method in class org.protege.editor.owl.ui.renderer.OWLRendererPreferences
 
setRenderer(OWLObjectRenderer) - Method in class org.protege.editor.owl.ui.frame.ExplanationFrame
 
setRendererClass(String) - Method in class org.protege.editor.owl.ui.renderer.OWLRendererPreferences
 
setRendererOption(String, String) - Method in interface uk.ac.man.cs.mig.util.graph.outputrenderer.GraphOutputRenderer
 
setRendererOption(String, String) - Method in class uk.ac.man.cs.mig.util.graph.outputrenderer.impl.DotOutputGraphRenderer
 
setRenderHyperlinks(boolean) - Method in class org.protege.editor.owl.ui.renderer.OWLRendererPreferences
 
setRenderPrefixes(boolean) - Method in class org.protege.editor.owl.ui.renderer.OWLRendererPreferences
 
setRightComponent(JComponent) - Method in class org.protege.editor.core.ui.workspace.WorkspaceViewsTab
 
setRightMargin(int) - Method in class org.protege.editor.owl.ui.renderer.OWLCellRenderer
 
setRightNode(OWLDescriptionNode) - Method in class org.protege.editor.owl.model.description.OWLDescriptionLeafNode
 
setRoot(OWLClass) - Method in class org.protege.editor.owl.model.hierarchy.AbstractSuperClassHierarchyProvider
 
setRoot(Set<OWLAxiom>) - Method in class org.protege.editor.owl.ui.OWLAxiomTypeFramePanel
 
setRootObject(R) - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrame
 
setRootObject(R) - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSection
 
setRootObject(OWLObject) - Method in class org.protege.editor.owl.ui.frame.OWLEntityFrame
 
setRootObject(R) - Method in interface org.protege.editor.owl.ui.frame.OWLFrame
Sets the root object.
setRootObject(R) - Method in interface org.protege.editor.owl.ui.frame.OWLFrameSection
 
setRootObject(R) - Method in class org.protege.editor.owl.ui.framelist.OWLFrameList2
 
setRotationCount(int) - Method in class org.protege.common.log.ProtegeRotatingAppender
 
setRowObject(Object) - Method in class org.protege.editor.core.ui.list.MListButton
 
setSaveErrorHandler(SaveErrorHandler) - Method in interface org.protege.editor.owl.model.OWLModelManager
 
setSaveErrorHandler(SaveErrorHandler) - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
 
setSaveLocation(File) - Method in class org.protege.editor.owl.ui.GatherOntologiesPanel
 
setScale(double) - Method in class uk.ac.man.cs.mig.coode.owlviz.export.DotExportFormat
If the export format supports the notion of outputting to a fixed scale, then this method may be used to set the scale of the export.
setScale(double) - Method in interface uk.ac.man.cs.mig.util.graph.export.ExportFormat
If the export format supports the notion of outputting to a fixed scale, then this method may be used to set the scale of the export.
setScale(double) - Method in class uk.ac.man.cs.mig.util.graph.export.impl.AbstractRasterFormat
If the export format supports the notion of outputting to a fixed scale, then this method may be used to set the scale of the export.
setScale(double) - Method in class uk.ac.man.cs.mig.util.graph.export.impl.AbstractVectorFormat
If the export format supports the notion of outputting to a fixed scale, then this method may be used to set the scale of the export.
setSearchDelay(long) - Method in class org.protege.editor.owl.model.find.EntityFinderPreferences
 
setSelectedAxiom(OWLAxiom) - Method in interface org.protege.editor.owl.model.selection.OWLSelectionModel
Deprecated. use setSelectedAxiom(OWLAxiomInstance)
setSelectedAxiom(OWLAxiomInstance) - Method in interface org.protege.editor.owl.model.selection.OWLSelectionModel
Instances of an axiom wrt the containing ontology
setSelectedAxiom(OWLAxiomInstance) - Method in class org.protege.editor.owl.model.selection.OWLSelectionModelImpl
 
setSelectedAxiom(OWLAxiom) - Method in class org.protege.editor.owl.model.selection.OWLSelectionModelImpl
 
setSelectedClass(OWLClass) - Method in class org.protege.editor.owl.ui.clshierarchy.AbstractOWLClassHierarchyViewComponent
 
setSelectedClass(OWLClass) - Method in class org.protege.editor.owl.ui.selector.OWLClassSelectorPanel
Deprecated. Use setSelection()
setSelectedClass(OWLClass) - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizSelectionModel
 
setSelectedClasses(Set<OWLClass>) - Method in class org.protege.editor.owl.ui.clshierarchy.AbstractOWLClassHierarchyViewComponent
 
setSelectedEntity(OWLEntity) - Method in interface org.protege.editor.owl.model.selection.OWLSelectionModel
A convenience method that will delegate to the appropriate selection method depending on the type of entity.
setSelectedEntity(OWLEntity) - Method in class org.protege.editor.owl.model.selection.OWLSelectionModelImpl
 
setSelectedEntity(OWLEntity) - Method in class org.protege.editor.owl.ui.view.AbstractOWLSelectionViewComponent
A convenience method that sets the specified entity to be the selected entity in the OWLSelectionModel.
setSelectedFormat(OWLOntologyFormat) - Method in class org.protege.editor.owl.ui.OntologyFormatPanel
 
setSelectedIndividual(OWLIndividual) - Method in class org.protege.editor.owl.ui.OWLIndividualListComponent
 
setSelectedIndividual(OWLIndividual) - Method in class org.protege.editor.owl.ui.selector.OWLIndividualSelectorPanel
Deprecated. Use setSelection
setSelectedIndividual(OWLIndividual) - Method in class org.protege.editor.owl.ui.view.OWLIndividualListViewComponent
 
setSelectedIndividuals(Set<OWLIndividual>) - Method in class org.protege.editor.owl.ui.view.OWLIndividualListViewComponent
 
setSelectedKit(MoveAxiomsKit) - Method in class org.protege.editor.owl.ui.ontology.wizard.move.MoveAxiomsWizard
 
setSelectedObject(OWLObject) - Method in interface org.protege.editor.owl.model.selection.OWLSelectionModel
 
setSelectedObject(OWLObject) - Method in class org.protege.editor.owl.model.selection.OWLSelectionModelImpl
 
setSelectedObject(E) - Method in class org.protege.editor.owl.ui.list.OWLObjectListPanel
 
setSelectedObject(Object) - Method in interface uk.ac.man.cs.mig.util.graph.controller.GraphSelectionModel
Causes the specified Object to be selected.
setSelectedObject(Object) - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultGraphSelectionModel
Causes the specified Object to be selected.
setSelectedOWLDataProperty(OWLDataProperty) - Method in class org.protege.editor.owl.ui.selector.OWLDataPropertySelectorPanel
Deprecated. Use setSelection
setSelectedOWLObject(N) - Method in class org.protege.editor.owl.ui.tree.OWLObjectTree
Sets the selected object.
setSelectedOWLObject(N, boolean) - Method in class org.protege.editor.owl.ui.tree.OWLObjectTree
 
setSelectedOWLObjectProperty(OWLObjectProperty) - Method in class org.protege.editor.owl.ui.selector.OWLObjectPropertySelectorPanel
Deprecated. Use setSelection
setSelectedOWLObjects(Set<N>) - Method in class org.protege.editor.owl.ui.tree.OWLObjectTree
 
setSelectedOWLObjects(Set<N>, boolean) - Method in class org.protege.editor.owl.ui.tree.OWLObjectTree
 
setSelectedProperties(Set<O>) - Method in class org.protege.editor.owl.ui.view.AbstractOWLPropertyHierarchyViewComponent
 
setSelectedProperty(O) - Method in class org.protege.editor.owl.ui.view.AbstractOWLPropertyHierarchyViewComponent
 
setSelectedTab(int) - Method in class org.protege.editor.core.ui.workspace.TabbedWorkspace
 
setSelectedTab(WorkspaceTab) - Method in class org.protege.editor.core.ui.workspace.TabbedWorkspace
 
setSelectedURI(URI) - Method in class org.protege.editor.owl.ui.frame.AnnotationURIList
 
setSelectedValues(Set<O>, boolean) - Method in class org.protege.editor.owl.ui.list.OWLObjectList
 
setSelection(Object) - Method in class org.protege.editor.owl.ui.OWLEntitySelectorPanel
 
setSelection(O) - Method in class org.protege.editor.owl.ui.selector.AbstractSelectorPanel
 
setSelection(Set<O>) - Method in class org.protege.editor.owl.ui.selector.AbstractSelectorPanel
 
setSelection(OWLClass) - Method in class org.protege.editor.owl.ui.selector.OWLClassSelectorPanel
 
setSelection(Set<OWLClass>) - Method in class org.protege.editor.owl.ui.selector.OWLClassSelectorPanel
 
setSelection(OWLDataProperty) - Method in class org.protege.editor.owl.ui.selector.OWLDataPropertySelectorPanel
 
setSelection(Set<OWLDataProperty>) - Method in class org.protege.editor.owl.ui.selector.OWLDataPropertySelectorPanel
 
setSelection(OWLDataType) - Method in class org.protege.editor.owl.ui.selector.OWLDataTypeSelectorPanel
 
setSelection(Set<OWLDataType>) - Method in class org.protege.editor.owl.ui.selector.OWLDataTypeSelectorPanel
 
setSelection(Set<OWLEntity>) - Method in class org.protege.editor.owl.ui.selector.OWLEntitySelectorPanel
 
setSelection(OWLIndividual) - Method in class org.protege.editor.owl.ui.selector.OWLIndividualSelectorPanel
 
setSelection(Set<OWLIndividual>) - Method in class org.protege.editor.owl.ui.selector.OWLIndividualSelectorPanel
 
setSelection(OWLObjectProperty) - Method in class org.protege.editor.owl.ui.selector.OWLObjectPropertySelectorPanel
 
setSelection(Set<OWLObjectProperty>) - Method in class org.protege.editor.owl.ui.selector.OWLObjectPropertySelectorPanel
 
setSelection(Set<OWLOntology>) - Method in class org.protege.editor.owl.ui.selector.OWLOntologySelectorPanel
 
setSelection(OWLOntology) - Method in class org.protege.editor.owl.ui.selector.OWLOntologySelectorPanel
 
setSelectionMode(int) - Method in class org.protege.editor.owl.ui.view.OWLIndividualListViewComponent
 
setSelectionPath(TreePath) - Method in class org.protege.editor.owl.ui.clshierarchy.AbstractOWLClassTreeAction
 
setSelectsFolders(boolean) - Method in class org.protege.editor.core.ui.util.FilePathPanel
 
setShape(Shape) - Method in interface uk.ac.man.cs.mig.util.graph.graph.Graph
Sets the shape that describes the Graph bounds.
setShape(Shape) - Method in class uk.ac.man.cs.mig.util.graph.graph.impl.DefaultGraph
Sets the shape that describes the Graph bounds.
setShowAncestorClasses(boolean) - Method in class org.coode.dlquery.ResultsList
 
setShowDescendantClasses(boolean) - Method in class org.coode.dlquery.ResultsList
 
setShowEquivalentClasses(boolean) - Method in class org.coode.dlquery.ResultsList
 
setShowInstances(boolean) - Method in class org.coode.dlquery.ResultsList
 
setShowSubClasses(boolean) - Method in class org.coode.dlquery.ResultsList
 
setShowSuperClasses(boolean) - Method in class org.coode.dlquery.ResultsList
 
setShowViewBanner(boolean) - Method in class org.protege.editor.core.ui.view.View
 
setShowViewBar(boolean) - Method in class org.protege.editor.core.ui.view.View
 
setSiblingSpacing(double) - Method in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.DotLayoutEngineProperties
 
setSignature(Set<OWLEntity>) - Method in class org.protege.editor.owl.ui.ontology.wizard.move.byreference.MoveAxiomsByReferenceKit
 
setSignature(Set<OWLEntity>) - Method in interface org.protege.editor.owl.ui.ontology.wizard.move.common.SignatureSelection
 
setSize(long) - Method in class org.protege.editor.owl.ui.inference.ReasonerProgressUI
 
setSize(int, int) - Method in class uk.ac.man.cs.mig.util.graph.graph.impl.DefaultNode
Sets the Node's size.
setSize(int, int) - Method in class uk.ac.man.cs.mig.util.graph.graph.impl.EllipticalNode
Sets the Node's size.
setSize(int, int) - Method in class uk.ac.man.cs.mig.util.graph.graph.impl.TriangularNode
Sets the Node's size.
setSize(int, int) - Method in interface uk.ac.man.cs.mig.util.graph.graph.Node
Sets the Node's size.
setSourceOntologies(Set<OWLOntology>) - Method in interface org.protege.editor.owl.ui.ontology.wizard.move.MoveAxiomsModel
 
setSourceOntologies(Set<OWLOntology>) - Method in class org.protege.editor.owl.ui.ontology.wizard.move.MoveAxiomsWizard
 
setStarted() - Method in class org.protege.editor.owl.ui.inference.ReasonerProgressUI
 
setStateBorder(Border) - Method in class org.protege.editor.owl.ui.clsdescriptioneditor.ExpressionEditor
 
setStrikeThrough(boolean) - Method in class org.protege.editor.owl.ui.renderer.OWLCellRenderer
 
setString(String, String) - Method in class org.protege.editor.core.editorkit.EditorKitDescriptor
 
setSubClassAxiomSymbol(String) - Method in class org.protege.editor.owl.ui.frame.ExplanationFrame
 
setSuffix(String) - Static method in class org.protege.editor.owl.model.entity.EntityCreationPreferences
 
setSuperProperty(OWLObjectPropertyExpression) - Method in class org.protege.editor.owl.ui.frame.OWLObjectPropertyChainEditor
 
setSyncronizing(boolean) - Method in class org.protege.editor.core.ui.view.View
 
setTabSize(int) - Method in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.SimpleCharStream
 
setTargetOntologyURI(URI) - Method in interface org.protege.editor.owl.ui.ontology.wizard.move.MoveAxiomsModel
 
setTargetOntologyURI(URI) - Method in class org.protege.editor.owl.ui.ontology.wizard.move.MoveAxiomsWizard
 
setText(String) - Method in class org.protege.editor.core.ui.view.ViewBanner
Sets the header sub header.
setTimer(int) - Method in class org.protege.editor.owl.model.io.OntologySourcesManager
 
setTitle(String) - Method in class org.protege.editor.core.ui.wizard.Wizard
Sets the title of the generated javax.swing.JDialog.
setTopComponent(JComponent) - Method in class org.protege.editor.core.ui.workspace.WorkspaceViewsTab
 
setTrackerMode(boolean) - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.options.ModeOptionsPanel
 
setTrackerMode(boolean) - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.options.OWLVizViewOptions
 
setTrackerRadius(int) - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.options.ModeOptionsPanel
 
setTrackerRadius(int) - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.options.OWLVizViewOptions
 
setTrackingModeDefault(boolean) - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizPreferences
 
setTransparent() - Method in class org.protege.editor.owl.ui.renderer.OWLCellRenderer
Deprecated. use setOpaque
setType(AbstractRestrictionCreatorPanel.RestrictionCreator) - Method in class org.protege.editor.owl.ui.editor.AbstractRestrictionCreatorPanel
 
setTypes(Set<AxiomType<? extends OWLAxiom>>) - Method in class org.protege.editor.owl.model.selection.axioms.AxiomTypeStrategy
 
setTypes(Set<AxiomType>) - Method in class org.protege.editor.owl.ui.ontology.wizard.move.bytype.MoveAxiomsByTypeKit
 
setUnsatisfiableNames(Set<String>) - Method in class org.protege.editor.owl.ui.renderer.OWLCellRenderer
 
setup(EditorKit) - Method in class org.protege.editor.core.editorkit.plugin.EditorKitHook
 
setup(String, EditorKit) - Method in class org.protege.editor.core.ui.preferences.PreferencesPanel
 
setup(ViewComponentPlugin) - Method in class org.protege.editor.core.ui.view.ViewComponent
 
setup(EditorKit) - Method in class org.protege.editor.core.ui.workspace.Workspace
This method is called by the system to set up the Workspace (with references to the EditorKit etc.)
setup(WorkspaceTabPlugin) - Method in class org.protege.editor.core.ui.workspace.WorkspaceTab
 
setup(OWLOntologyManager, String, String) - Method in class org.protege.editor.owl.model.inference.NoOpReasonerFactory
 
setup(OWLOntologyManager, String, String) - Method in interface org.protege.editor.owl.model.inference.ProtegeOWLReasonerFactory
 
setup(OWLOntologyManager, String, String) - Method in class org.protege.editor.owl.model.inference.ProtegeOWLReasonerFactoryAdapter
 
setup(OWLEditorKit) - Method in class org.protege.editor.owl.model.io.IOListenerPluginInstance
 
setup(String, String, OWLEditorKit) - Method in class org.protege.editor.owl.ui.editor.AbstractOWLDescriptionEditor
 
setup(String, String, OWLEditorKit) - Method in interface org.protege.editor.owl.ui.editor.OWLDescriptionEditor
 
setup(OWLEditorKit, OWLFrameList2<R>) - Method in class org.protege.editor.owl.ui.framelist.OWLFrameListPopupMenuAction
 
setup(OWLEditorKit, MoveAxiomsWizard) - Method in class org.protege.editor.owl.ui.ontology.wizard.move.MoveAxiomsKitConfigurationPanel
 
setup(OWLModelManager) - Method in class org.protege.editor.owl.ui.renderer.AbstractOWLEntityRenderer
 
setup(OWLModelManager) - Method in class org.protege.editor.owl.ui.renderer.OWLEntityColorProvider
 
setup(OWLModelManager) - Method in interface org.protege.editor.owl.ui.renderer.OWLModelManagerEntityRenderer
 
setup(OWLModelManager) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
setupActions() - Method in class org.protege.editor.owl.ui.view.OWLIndividualListViewComponent
 
setupArrows() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.renderer.OWLClsNodeRenderer
 
setupArrows() - Method in class uk.ac.man.cs.mig.util.graph.renderer.impl.DefaultNodeRenderer
 
setupExportFormats() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizView
 
setupListeners() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizGraphPanel
 
setupListeners(GraphComponent) - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizView
Sets up the main listeners that are required by the tab, including selection listeners, and knowledgebase listeners.
setupListeners() - Method in class uk.ac.man.cs.mig.util.popup.PopupComponent
Sets up listeners
setupOptionsDialog() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizView
 
setupThumbnailListeners() - Method in class uk.ac.man.cs.mig.util.graph.ui.GraphComponent
 
setURI(String, URI) - Method in class org.protege.editor.core.editorkit.EditorKitDescriptor
 
setURI(URI) - Method in class org.protege.editor.core.ui.util.FileURIPanel
 
setURIs(Set<URI>) - Method in class org.protege.editor.owl.model.selection.axioms.AnnotationAxiomsStrategy
 
setURIs(Set<URI>) - Method in class org.protege.editor.owl.ui.ontology.wizard.move.byannotation.MoveAnnotationAxiomsByURIKit
 
setUseDefaultBaseURI(boolean) - Static method in class org.protege.editor.owl.model.entity.EntityCreationPreferences
 
setUseEntities(boolean) - Method in class org.protege.editor.owl.model.XMLWriterPrefs
 
setUseExpressionCompletion(boolean) - Method in class org.protege.editor.owl.ui.clsdescriptioneditor.ExpressionEditorPreferences
 
setUseOrdering(boolean) - Method in class org.protege.editor.owl.ui.frame.ExplanationFrame
 
setUseRegularExpressions(boolean) - Method in class org.protege.editor.owl.model.find.EntityFinderPreferences
 
setUserObject(Object) - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSectionRow
 
setUserObject(Object) - Method in interface org.protege.editor.owl.ui.frame.OWLFrameSectionRow
 
setUserObject(Object) - Method in interface uk.ac.man.cs.mig.util.graph.graph.Edge
Allows an object to be associated with the Edge
setUserObject(Object) - Method in class uk.ac.man.cs.mig.util.graph.graph.impl.DefaultEdge
Allows an object to be associated with the Edge
setUserObject(Object) - Method in class uk.ac.man.cs.mig.util.wizard.Wizard
Allows an Object to be associated with the Wizard
setUseThatKeyword(boolean) - Method in class org.protege.editor.owl.ui.renderer.OWLRendererPreferences
 
setValue(Boolean) - Method in class org.protege.editor.core.ui.preferences.node.BooleanPreferenceNode
 
setValue(V) - Method in interface org.protege.editor.core.ui.preferences.node.PreferenceNode
 
setValue(String) - Method in class org.protege.editor.core.ui.preferences.node.StringPreferenceNode
 
setValue(OWLConstant) - Method in class org.protege.editor.owl.ui.frame.OWLConstantEditor
 
setValueAt(Object, int, int) - Method in class org.protege.editor.owl.ui.prefix.PrefixMapperTableModel
 
setView(View) - Method in class org.protege.editor.core.ui.view.ViewAction
 
setView(View) - Method in class org.protege.editor.core.ui.view.ViewComponent
 
setVisible(boolean) - Method in class org.protege.editor.core.ProtegeWelcomeFrame
 
setVisible(boolean) - Method in class org.protege.editor.core.ui.error.ErrorLogPanel
 
setVisible(boolean) - Method in class org.protege.editor.core.ui.progress.BackgroundTaskListPanel
 
setVisible(OWLOntology, boolean) - Method in interface org.protege.editor.owl.model.OntologyVisibilityManager
 
setVisible(Set<OWLOntology>) - Method in interface org.protege.editor.owl.model.OntologyVisibilityManager
 
setVisible(Set<OWLOntology>) - Method in class org.protege.editor.owl.model.OntologyVisibilityManagerImpl
 
setVisible(OWLOntology, boolean) - Method in class org.protege.editor.owl.model.OntologyVisibilityManagerImpl
 
setVisualisedObjectManager(VisualisedObjectManager) - Method in interface uk.ac.man.cs.mig.util.graph.controller.Controller
Sets the VisualisedObjectManager that is responsible for keeping track of objects contained in the Graph
setVisualisedObjectManager(VisualisedObjectManager) - Method in interface uk.ac.man.cs.mig.util.graph.controller.GraphGenerator
Sets the VisualisedObjectManager, which the GraphGenerator bases the Graph on.
setVisualisedObjectManager(VisualisedObjectManager) - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultController
Sets the VisualisedObjectManager that is responsible for keeping track of objects contained in the Graph.
setVisualisedObjectManager(VisualisedObjectManager) - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultGraphGenerator
Sets the VisualisedObjectManager, which the GraphGenerator bases the Graph on.
setWizardButtonState() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.exportwizard.SpecifyFileNamePage
Sets the Wizard button state, which depends on the contents of the text field that the file name is entered into.
setWizardLocation() - Method in class uk.ac.man.cs.mig.util.wizard.Wizard
Centres the Wizard on it's parent, or the screen if the parent is null.
setWrap(boolean) - Method in class org.protege.editor.owl.ui.framelist.OWLFrameList2
 
setWrap(boolean) - Method in class org.protege.editor.owl.ui.framelist.OWLFrameListRenderer
 
setWrap(boolean) - Method in class org.protege.editor.owl.ui.renderer.OWLCellRenderer
 
setZoomLevel(int) - Method in class uk.ac.man.cs.mig.util.graph.ui.impl.DefaultGraphView
 
setZoomLevel(int) - Method in interface uk.ac.man.cs.mig.util.graph.ui.Zoomable
Requests that the zoom level is set to the specified value.
show(OWLEntity) - Method in class org.protege.editor.owl.ui.clshierarchy.AbstractOWLClassHierarchyViewComponent
 
show(OWLIndividual) - Method in class org.protege.editor.owl.ui.OWLIndividualListComponent
 
show(O) - Method in class org.protege.editor.owl.ui.view.AbstractOWLPropertyHierarchyViewComponent
Deprecated. use setSelectedProperty
show(E) - Method in interface org.protege.editor.owl.ui.view.Findable
 
show(OWLIndividual) - Method in class org.protege.editor.owl.ui.view.OWLIndividualListViewComponent
 
SHOW_ALL_CLASSES_ICON - Static variable in class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizIcons
 
SHOW_CLASS_ICON - Static variable in class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizIcons
 
SHOW_PRIMITIVE_CLASSES_ONLY - Static variable in class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizIcons
 
SHOW_PRIMITIVE_CLASSES_ONLY_SELECTED - Static variable in class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizIcons
 
SHOW_SUBCLASSES_ICON - Static variable in class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizIcons
 
SHOW_SUPERCLASSES_ICON - Static variable in class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizIcons
 
ShowAllClassesCommand - Class in uk.ac.man.cs.mig.coode.owlviz.command
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Apr 5, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

ShowAllClassesCommand(OWLVizViewI, OWLModelManager) - Constructor for class uk.ac.man.cs.mig.coode.owlviz.command.ShowAllClassesCommand
 
ShowAnonymousClassesCommand - Class in uk.ac.man.cs.mig.coode.owlviz.command
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Sep 23, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

ShowAnonymousClassesCommand(Controller, Controller) - Constructor for class uk.ac.man.cs.mig.coode.owlviz.command.ShowAnonymousClassesCommand
 
showChildren(Object, Class) - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultVisualisedObjectManager
Shows the children of the specified object.
showChildren(Object, int, Class) - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultVisualisedObjectManager
Shows the children of the specified object to the number of levels specified.
showChildren(Object, Class) - Method in interface uk.ac.man.cs.mig.util.graph.controller.VisualisedObjectManager
Shows the children of the specified object.
showChildren(Object, int, Class) - Method in interface uk.ac.man.cs.mig.util.graph.controller.VisualisedObjectManager
Shows the children of the specified object to the number of levels specified.
showClass(OWLClass) - Method in class org.protege.editor.owl.ui.view.AbstractOWLClassViewComponent
 
ShowClassCommand - Class in uk.ac.man.cs.mig.coode.owlviz.command
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Feb 11, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

ShowClassCommand(OWLVizViewI, OWLModelManager, Frame) - Constructor for class uk.ac.man.cs.mig.coode.owlviz.command.ShowClassCommand
 
showConfirmDialog(Component, String, JComponent, int, int, JComponent) - Static method in class org.protege.editor.core.ui.util.JOptionPaneEx
 
showConfirmDialog(Component, String, JComponent, int, int, JComponent, Object[], Object) - Static method in class org.protege.editor.core.ui.util.JOptionPaneEx
 
showDialog() - Static method in class org.protege.editor.core.ui.about.AboutPanel
 
showDialog(OntologyRepository) - Static method in class org.protege.editor.core.ui.OpenFromRepositoryPanel
 
showDialog() - Static method in class org.protege.editor.core.ui.OpenFromURIPanel
 
showDialog(Map<String, DownloadsProvider>) - Static method in class org.protege.editor.core.update.PluginPanel
 
showDialog() - Static method in class org.protege.editor.owl.ui.action.ExportInferredOntologyPanel
 
showDialog(OWLDescription, OWLEditorKit) - Static method in class org.protege.editor.owl.ui.CreateDefinedClassPanel
 
showDialog(Component, OWLEditorKit, Findable) - Static method in class org.protege.editor.owl.ui.find.OWLEntityFindPanel
 
showDialog(OWLEditorKit) - Static method in class org.protege.editor.owl.ui.GatherOntologiesPanel
 
showDialog(OWLEditorKit) - Static method in class org.protege.editor.owl.ui.library.OntologyLibraryPanel
 
showDialog(OWLEditorKit) - Static method in class org.protege.editor.owl.ui.ontology.location.PhysicalLocationPanel
 
showDialog(Component) - Static method in class org.protege.editor.owl.ui.ontology.OntologyPreferencesPanel
 
showDialog(OWLEditorKit, OWLOntologyFormat) - Static method in class org.protege.editor.owl.ui.OntologyFormatPanel
 
showDialog(OWLEditorKit, OWLOntologyFormat, String) - Static method in class org.protege.editor.owl.ui.OntologyFormatPanel
 
showDialog(OWLEditorKit, String, Class<T>) - Static method in class org.protege.editor.owl.ui.OWLEntityCreationPanel
 
showDialog(OWLEditorKit) - Static method in class org.protege.editor.owl.ui.prefix.PrefixMappingPanel
 
showDialog(OWLEditorKit, OWLEntity) - Static method in class org.protege.editor.owl.ui.rename.RenameEntityPanel
 
showDialog(OWLEditorKit) - Static method in class org.protege.editor.owl.ui.renderer.AnnotationRendererPanel
 
showDialog(OWLEditorKit, Set<OWLOntology>) - Static method in class org.protege.editor.owl.ui.SaveConfirmationPanel
 
showDialog(String, JComponent) - Method in class org.protege.editor.owl.ui.UIHelper
 
showDialog(String, JComponent, int) - Method in class org.protege.editor.owl.ui.UIHelper
 
showDialog(String, JComponent, JComponent) - Method in class org.protege.editor.owl.ui.UIHelper
 
showDialog() - Method in class uk.ac.man.cs.mig.util.okcanceldialog.OKCancelDialog
 
showErrorDialog(Throwable) - Static method in class org.protege.editor.core.ui.error.ErrorLogPanel
Shows a local error dialog for displaying one exception
showFile(File) - Static method in class org.protege.editor.core.FileUtils
Attempts to show a File using the native operating system file view, for example the Finder on a Mac, or Explorer on Windows.
ShowFileAction - Class in org.protege.editor.owl.ui.action
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 06-Oct-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

ShowFileAction(URI) - Constructor for class org.protege.editor.owl.ui.action.ShowFileAction
 
showModalDialog() - Method in class org.protege.editor.core.ui.wizard.Wizard
Convienence method that displays a modal wizard dialog and blocks until the dialog has completed.
showModalDialog() - Method in class org.protege.editor.owl.ui.ontology.wizard.create.CreateOntologyWizard
 
showObject(Object) - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultVisualisedObjectManager
Specifies that the object should be visible in a visualisation of the graph model.
showObject(Object, int, Class) - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultVisualisedObjectManager
Specifies that the object should be visible in a visualisation of the graph model.
showObject(Object) - Method in interface uk.ac.man.cs.mig.util.graph.controller.VisualisedObjectManager
Specifies that the object should be visible in a visualisation of the graph model.
showObject(Object, int, Class) - Method in interface uk.ac.man.cs.mig.util.graph.controller.VisualisedObjectManager
Specifies that the object should be visible in a visualisation of the graph model.
showObjects(Object[]) - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultVisualisedObjectManager
Requests that the specified objects be added to the visualisation.
showObjects(Object[]) - Method in interface uk.ac.man.cs.mig.util.graph.controller.VisualisedObjectManager
Requests that the specified objects be added to the visualisation.
ShowOntologyLibrariesAction - Class in org.protege.editor.owl.ui.library
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 24-Aug-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

ShowOntologyLibrariesAction() - Constructor for class org.protege.editor.owl.ui.library.ShowOntologyLibrariesAction
 
ShowOntologyLocationsAction - Class in org.protege.editor.owl.ui.ontology.location
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 02-Sep-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

ShowOntologyLocationsAction() - Constructor for class org.protege.editor.owl.ui.ontology.location.ShowOntologyLocationsAction
 
showOptionPane(String, String, int, int) - Method in class org.protege.editor.owl.ui.UIHelper
 
showParents(Object, Class) - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultVisualisedObjectManager
Shows the parents of the specified object.
showParents(Object, int, Class) - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultVisualisedObjectManager
Shows the parents of the specified object to the number of levels specified.
showParents(Object, Class) - Method in interface uk.ac.man.cs.mig.util.graph.controller.VisualisedObjectManager
Shows the parents of the specified object.
showParents(Object, int, Class) - Method in interface uk.ac.man.cs.mig.util.graph.controller.VisualisedObjectManager
Shows the parents of the specified object to the number of levels specified.
showPopup(JComponent, int, int) - Method in class uk.ac.man.cs.mig.util.popup.PopupComponent
Causes the popup to be displayed at the specified location.
ShowPreferencesAction - Class in org.protege.editor.core.ui.preferences
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 08-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

ShowPreferencesAction() - Constructor for class org.protege.editor.core.ui.preferences.ShowPreferencesAction
 
showPreferencesDialog(String, EditorKit) - Static method in class org.protege.editor.core.ui.preferences.PreferencesDialogPanel
 
ShowPrefixMappingsAction - Class in org.protege.editor.owl.ui.prefix
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 22-Sep-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

ShowPrefixMappingsAction() - Constructor for class org.protege.editor.owl.ui.prefix.ShowPrefixMappingsAction
 
ShowProjectInfo - Class in uk.ac.man.cs.mig.coode.owlviz.command
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Feb 28, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

ShowProjectInfo(OWLVizView) - Constructor for class uk.ac.man.cs.mig.coode.owlviz.command.ShowProjectInfo
 
showResultsView(String, String, Color, ViewComponent, boolean, int) - Method in class org.protege.editor.core.ui.workspace.Workspace
 
showResultsView(String, boolean, int) - Method in class org.protege.editor.core.ui.workspace.Workspace
 
showResultsView(ViewComponentPlugin, boolean, int) - Method in class org.protege.editor.core.ui.workspace.Workspace
 
ShowSubclassesCommand - Class in uk.ac.man.cs.mig.coode.owlviz.command
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Feb 5, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

ShowSubclassesCommand(OWLVizViewI) - Constructor for class uk.ac.man.cs.mig.coode.owlviz.command.ShowSubclassesCommand
 
ShowSuperclassesCommand - Class in uk.ac.man.cs.mig.coode.owlviz.command
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Feb 11, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

ShowSuperclassesCommand(OWLVizViewI) - Constructor for class uk.ac.man.cs.mig.coode.owlviz.command.ShowSuperclassesCommand
 
showTaskDialog(BackgroundTaskManager) - Static method in class org.protege.editor.core.ui.progress.BackgroundTaskListPanel
Shows a local error dialog for displaying one exception
showUpdatesDialog(Map<String, DownloadsProvider>) - Method in class org.protege.editor.core.update.PluginManager
 
ShowUsageAction - Class in org.protege.editor.owl.ui.action
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 21-Feb-2007

ShowUsageAction() - Constructor for class org.protege.editor.owl.ui.action.ShowUsageAction
 
ShowUsageAction - Class in org.protege.editor.owl.ui.clshierarchy
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 29-May-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

ShowUsageAction(OWLWorkspace) - Constructor for class org.protege.editor.owl.ui.clshierarchy.ShowUsageAction
 
showValidatingConfirmDialog(Component, String, JComponent, int, int, JComponent) - Static method in class org.protege.editor.core.ui.util.JOptionPaneEx
 
showValidatingDialog(String, JComponent, JComponent) - Method in class org.protege.editor.owl.ui.UIHelper
 
showView(String) - Method in class org.protege.editor.core.ui.workspace.WorkspaceViewManager
Shows the view that is identified by the specified id.
showWizard() - Method in class uk.ac.man.cs.mig.util.wizard.Wizard
Causes the Wizard to be shown.
SIBLING_SPACING - Static variable in class uk.ac.man.cs.mig.coode.owlviz.ui.options.OWLVizProperties
Deprecated. The sibling spacing used by DOT
SIBLING_SPACING - Static variable in class uk.ac.man.cs.mig.util.graph.outputrenderer.impl.DotOutputGraphRenderer
 
SIBLING_SPACING_KEY - Static variable in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.DotLayoutEngineProperties
 
SignatureDependentSelectionPreviewPanel - Class in org.protege.editor.owl.ui.ontology.wizard.move.common
Author: Matthew Horridge
The University Of Manchester
Information Management Group
Date: 23-Sep-2008

SignatureDependentSelectionPreviewPanel(SignatureSelection) - Constructor for class org.protege.editor.owl.ui.ontology.wizard.move.common.SignatureDependentSelectionPreviewPanel
 
SignatureSelection - Interface in org.protege.editor.owl.ui.ontology.wizard.move.common
Author: Matthew Horridge
The University Of Manchester
Information Management Group
Date: 23-Sep-2008

SimpleCharStream - Class in uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser
An implementation of interface CharStream, where the stream is assumed to contain only ASCII characters (without unicode processing).
SimpleCharStream(Reader, int, int, int) - Constructor for class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.SimpleCharStream
 
SimpleCharStream(Reader, int, int) - Constructor for class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.SimpleCharStream
 
SimpleCharStream(Reader) - Constructor for class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.SimpleCharStream
 
SimpleCharStream(InputStream, String, int, int, int) - Constructor for class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.SimpleCharStream
 
SimpleCharStream(InputStream, int, int, int) - Constructor for class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.SimpleCharStream
 
SimpleCharStream(InputStream, String, int, int) - Constructor for class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.SimpleCharStream
 
SimpleCharStream(InputStream, int, int) - Constructor for class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.SimpleCharStream
 
SimpleCharStream(InputStream, String) - Constructor for class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.SimpleCharStream
 
SimpleCharStream(InputStream) - Constructor for class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.SimpleCharStream
 
SIZE_X - Static variable in class org.protege.editor.core.ui.workspace.WorkspaceFrame
 
SIZE_Y - Static variable in class org.protege.editor.core.ui.workspace.WorkspaceFrame
 
SOMECLS_NAME - Static variable in class uk.ac.man.cs.mig.coode.owlviz.ui.renderer.OWLClsNodeRenderer
 
SomeRestrictionPropertyExtractor - Class in org.protege.editor.owl.model.util
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 14-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

SomeRestrictionPropertyExtractor() - Constructor for class org.protege.editor.owl.model.util.SomeRestrictionPropertyExtractor
 
sortByColumn(int) - Method in class org.protege.editor.core.ui.RepositoryTableModel
 
sortByOntologyURI() - Method in class org.protege.editor.core.ui.RepositoryTableModel
 
sortByShortName() - Method in class org.protege.editor.core.ui.RepositoryTableModel
 
SourcePanel - Class in org.protege.editor.owl.ui.error
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Dec 11, 2008

SourcePanel(URL) - Constructor for class org.protege.editor.owl.ui.error.SourcePanel
 
sourceViewBoundsChanged(ThumbnailViewSourceEvent) - Method in interface uk.ac.man.cs.mig.util.graph.event.ThumbnailViewSourceListener
Called when the bounds of the ThumbnailViewSource have changed.
sourceViewBoundsChanged(ThumbnailViewSourceEvent) - Method in class uk.ac.man.cs.mig.util.graph.ui.impl.DefaultThumbnailView
Called when the bounds of the ThumbnailViewSource have changed.
sourceViewContentsChanged(ThumbnailViewSourceEvent) - Method in interface uk.ac.man.cs.mig.util.graph.event.ThumbnailViewSourceListener
Called when the ThumbnailViewSource contents have changed and therefore the ThumbnailView needs updating.
sourceViewContentsChanged(ThumbnailViewSourceEvent) - Method in class uk.ac.man.cs.mig.util.graph.ui.impl.DefaultThumbnailView
Called when the ThumbnailViewSource contents have changed and therefore the ThumbnailView needs updating.
sourceViewVisibleRectChanged(ThumbnailViewSourceEvent) - Method in interface uk.ac.man.cs.mig.util.graph.event.ThumbnailViewSourceListener
Called when the ThumbnailViewSource visible rectangle changes size.
sourceViewVisibleRectChanged(ThumbnailViewSourceEvent) - Method in class uk.ac.man.cs.mig.util.graph.ui.impl.DefaultThumbnailView
Called when the ThumbnailViewSource visible rectangle changes size.
specialConstructor - Variable in exception uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.ParseException
This variable determines which constructor was used to create this object and thereby affects the semantics of the "getMessage" method (see below).
specialToken - Variable in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.Token
This field is used to access special tokens that occur prior to this token, but after the immediately preceding regular (non-special) token.
SpeciesValidationReportView - Class in org.protege.editor.owl.ui
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Mar 29, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

SpeciesValidationReportView() - Constructor for class org.protege.editor.owl.ui.SpeciesValidationReportView
 
SpecifyFileNamePage - Class in uk.ac.man.cs.mig.coode.owlviz.ui.exportwizard
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Feb 25, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

SpecifyFileNamePage() - Constructor for class uk.ac.man.cs.mig.coode.owlviz.ui.exportwizard.SpecifyFileNamePage
 
SpecifyFilePathPanel - Class in org.protege.editor.owl.ui.ontology.imports.missing
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 17-Oct-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

SpecifyFilePathPanel(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.ontology.imports.missing.SpecifyFilePathPanel
 
SpecifyHierarchyPage - Class in uk.ac.man.cs.mig.coode.owlviz.ui.exportwizard
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Mar 3, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

SpecifyHierarchyPage(OWLVizViewI) - Constructor for class uk.ac.man.cs.mig.coode.owlviz.ui.exportwizard.SpecifyHierarchyPage
 
split(OWLDisjointClassesAxiom) - Method in class org.protege.editor.owl.ui.action.SplitDisjointClassesAction
 
SplitDisjointClassesAction - Class in org.protege.editor.owl.ui.action
Author: Nick Drummond
The University Of Manchester
BioHealth Informatics Group
Date: May 19, 2008
SplitDisjointClassesAction() - Constructor for class org.protege.editor.owl.ui.action.SplitDisjointClassesAction
 
splitHorizontally() - Method in class org.protege.editor.core.ui.view.View
 
splitHorizontally(View) - Method in class org.protege.editor.core.ui.view.ViewContainer
 
splitHorizontallyWith(ViewComponentPlugin) - Method in class org.protege.editor.core.ui.view.View
 
SplitSubClassAxiomsAction - Class in org.protege.editor.owl.ui.action
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 15-Aug-2007

SplitSubClassAxiomsAction() - Constructor for class org.protege.editor.owl.ui.action.SplitSubClassAxiomsAction
 
splitVertically() - Method in class org.protege.editor.core.ui.view.View
 
splitVertically(View) - Method in class org.protege.editor.core.ui.view.ViewContainer
 
splitVerticallyWith(ViewComponentPlugin) - Method in class org.protege.editor.core.ui.view.View
 
SQCLOSEPAR - Static variable in interface uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.DotParserConstants
 
SQOPENPAR - Static variable in interface uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.DotParserConstants
 
start(BundleContext) - Method in class org.protege.editor.core.plugin.DefaultPluginActivator
 
start(BundleContext) - Method in class org.protege.editor.core.ProtegeApplication
 
start() - Method in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.DotParser
 
startedLoadingOntology(OWLOntologyLoaderListener.LoadingStartedEvent) - Method in class org.protege.editor.owl.model.OWLModelManagerImpl
 
startProcess(String) - Method in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.DotProcess
Lays out a graph using the dot application
startTask(BackgroundTask) - Method in class org.protege.editor.core.ui.progress.BackgroundTaskLabel
 
startTask(BackgroundTask) - Method in interface org.protege.editor.core.ui.progress.BackgroundTaskListener
 
startTask(BackgroundTask) - Method in class org.protege.editor.core.ui.progress.BackgroundTaskManager
 
startTask(String) - Method in class org.protege.editor.core.ui.progress.BackgroundTaskManager
Convenience method that creates a simple task with the label given
stateChanged(HistoryManager) - Method in interface org.protege.editor.owl.model.history.UndoManagerListener
Called when the state of the undo manager has changed.
staticFlag - Static variable in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.SimpleCharStream
 
stmt() - Method in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.DotParser
 
stop(BundleContext) - Method in class org.protege.editor.core.plugin.DefaultPluginActivator
 
stop(BundleContext) - Method in class org.protege.editor.core.ProtegeApplication
 
storeRecentLocations() - Method in class org.protege.editor.owl.ui.ontology.wizard.create.PhysicalLocationPanel
 
storeViewLayout(String) - Method in class org.protege.editor.core.ui.view.ViewsPane
Stores a serialisation of a view layout in the preferences system
StringPreferenceNode - Class in org.protege.editor.core.ui.preferences.node
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 08-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

StringPreferenceNode(String) - Constructor for class org.protege.editor.core.ui.preferences.node.StringPreferenceNode
 
subgraph() - Method in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.DotParser
 
SUBS_ONLY - Static variable in class uk.ac.man.cs.mig.coode.owlviz.ui.ClassRadiusDialog
 
SUPERS_AND_SUBS - Static variable in class uk.ac.man.cs.mig.coode.owlviz.ui.ClassRadiusDialog
 
SUPERS_ONLY - Static variable in class uk.ac.man.cs.mig.coode.owlviz.ui.ClassRadiusDialog
 
supportsAntialiasing() - Method in class uk.ac.man.cs.mig.coode.owlviz.export.DotExportFormat
Determine whether or not the format supports antialiasing.
supportsAntialiasing() - Method in interface uk.ac.man.cs.mig.util.graph.export.ExportFormat
Determine whether or not the format supports antialiasing.
supportsAntialiasing() - Method in class uk.ac.man.cs.mig.util.graph.export.impl.AbstractRasterFormat
Determine whether or not the format supports antialiasing.
supportsAntialiasing() - Method in class uk.ac.man.cs.mig.util.graph.export.impl.AbstractVectorFormat
Determine whether or not the format supports antialiasing.
supportsMultipleObjectSelection() - Method in interface uk.ac.man.cs.mig.util.graph.controller.GraphSelectionModel
Determines whether the model support multiple Node selection.
supportsMultipleObjectSelection() - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultGraphSelectionModel
Determines whether the model support multiple Node selection.
supportsScaledOutput() - Method in class uk.ac.man.cs.mig.coode.owlviz.export.DotExportFormat
Determines whether or not the export format supports the notion of scaling or not.
supportsScaledOutput() - Method in interface uk.ac.man.cs.mig.util.graph.export.ExportFormat
Determines whether or not the export format supports the notion of scaling or not.
supportsScaledOutput() - Method in class uk.ac.man.cs.mig.util.graph.export.impl.AbstractRasterFormat
Determines whether or not the export format supports the notion of scaling or not.
supportsScaledOutput() - Method in class uk.ac.man.cs.mig.util.graph.export.impl.AbstractVectorFormat
Determines whether or not the export format supports the notion of scaling or not.
SVGExportFormat - Class in uk.ac.man.cs.mig.util.graph.export.impl
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Feb 20, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

SVGExportFormat() - Constructor for class uk.ac.man.cs.mig.util.graph.export.impl.SVGExportFormat
 
SwitchTo(int) - Method in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.DotParserTokenManager
 
SwitchToDefiningOntologyAction<R> - Class in org.protege.editor.owl.ui.framelist
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 18-Dec-2007

SwitchToDefiningOntologyAction() - Constructor for class org.protege.editor.owl.ui.framelist.SwitchToDefiningOntologyAction
 
SWRLRuleChecker - Class in org.protege.editor.owl.ui.clsdescriptioneditor
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Jul 23, 2008

SWRLRuleChecker(OWLModelManager) - Constructor for class org.protege.editor.owl.ui.clsdescriptioneditor.SWRLRuleChecker
 
SWRLRuleEditor - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 06-Jul-2007

SWRLRuleEditor(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.frame.SWRLRuleEditor
 
SWRLRuleFrameSectionRow - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 06-Jul-2007

SWRLRuleFrameSectionRow(OWLEditorKit, OWLFrameSection, OWLOntology, OWLOntology, SWRLRule) - Constructor for class org.protege.editor.owl.ui.frame.SWRLRuleFrameSectionRow
 
SWRLRulesFrame - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 06-Jul-2007

SWRLRulesFrame(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.frame.SWRLRulesFrame
 
SWRLRulesFrameSection - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 06-Jul-2007

SWRLRulesFrameSection(OWLEditorKit, OWLFrame<? extends OWLOntology>) - Constructor for class org.protege.editor.owl.ui.frame.SWRLRulesFrameSection
 
SWRLRulesViewComponent - Class in org.protege.editor.owl.ui.view
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 06-Jul-2007

SWRLRulesViewComponent() - Constructor for class org.protege.editor.owl.ui.view.SWRLRulesViewComponent
 
SyntaxGuesser - Class in org.protege.editor.owl.model.io
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: May 11, 2009

A really nasty fail fast quick-check of the file contents to work out which format it is.

SyntaxGuesser() - Constructor for class org.protege.editor.owl.model.io.SyntaxGuesser
 

T

TabbedWorkspace - Class in org.protege.editor.core.ui.workspace
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Mar 17, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

A TabbedWorkspace represents a Workspace that contains tabs.

TabbedWorkspace() - Constructor for class org.protege.editor.core.ui.workspace.TabbedWorkspace
 
TabbedWorkspaceStateManager - Class in org.protege.editor.core.ui.workspace
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 06-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

TabbedWorkspaceStateManager() - Constructor for class org.protege.editor.core.ui.workspace.TabbedWorkspaceStateManager
 
TabbedWorkspaceStateManager(TabbedWorkspace) - Constructor for class org.protege.editor.core.ui.workspace.TabbedWorkspaceStateManager
 
TabIndentedHierachyTextPane - Class in org.protege.editor.owl.ui.hierarchy.creation
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 17-Jul-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

TabIndentedHierachyTextPane() - Constructor for class org.protege.editor.owl.ui.hierarchy.creation.TabIndentedHierachyTextPane
 
TabIndentedHierarchyPanel - Class in org.protege.editor.owl.ui.hierarchy.creation
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 17-Jul-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

TabIndentedHierarchyPanel(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.hierarchy.creation.TabIndentedHierarchyPanel
 
TabIndentedHierarchyParser - Class in org.protege.editor.owl.model.hierarchy.tabbed
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 16-Jul-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

TabIndentedHierarchyParser(int) - Constructor for class org.protege.editor.owl.model.hierarchy.tabbed.TabIndentedHierarchyParser
 
TabIndentedHierarchyParser(int, String, String) - Constructor for class org.protege.editor.owl.model.hierarchy.tabbed.TabIndentedHierarchyParser
 
tableChanged(TableModelEvent) - Method in class org.protege.editor.core.ui.util.CheckTable
 
TableUtils - Class in org.protege.editor.core.ui.util
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Sep 25, 2008

TableUtils() - Constructor for class org.protege.editor.core.ui.util.TableUtils
 
TABS_MENU_NAME - Static variable in class org.protege.editor.core.ui.workspace.TabbedWorkspace
 
TABS_PREFERENCES_SET - Static variable in class org.protege.editor.core.ui.workspace.TabbedWorkspaceStateManager
 
tabSize - Variable in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.SimpleCharStream
 
TerminalElementFinder<X> - Class in org.protege.editor.owl.model.hierarchy.roots
This class encapsulates a relation, r: X → X.
TerminalElementFinder(Relation<X>) - Constructor for class org.protege.editor.owl.model.hierarchy.roots.TerminalElementFinder
 
Test - Class in org.protege.editor.owl.ui.frame
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 19-Jan-2007

Test() - Constructor for class org.protege.editor.owl.ui.frame.Test
 
Test - Class in uk.ac.man.cs.mig.coode.owlviz.apitest
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: May 4, 2005

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

Test() - Constructor for class uk.ac.man.cs.mig.coode.owlviz.apitest.Test
 
ThumbnailView - Class in uk.ac.man.cs.mig.util.graph.ui
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Jan 12, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

ThumbnailView() - Constructor for class uk.ac.man.cs.mig.util.graph.ui.ThumbnailView
 
ThumbnailViewSource - Interface in uk.ac.man.cs.mig.util.graph.ui
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Jan 12, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

A ThumbnailViewSource draws a minature version of a larger view when only a portion of the larger view can be seen.
ThumbnailViewSourceEvent - Class in uk.ac.man.cs.mig.util.graph.event
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Feb 19, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

ThumbnailViewSourceEvent(ThumbnailViewSource) - Constructor for class uk.ac.man.cs.mig.util.graph.event.ThumbnailViewSourceEvent
Constructs a ThumbnailViewSourceEvent
ThumbnailViewSourceListener - Interface in uk.ac.man.cs.mig.util.graph.event
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Feb 19, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

TimestampOutputAction - Class in org.protege.editor.core.ui.action
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Jun 25, 2008

TimestampOutputAction() - Constructor for class org.protege.editor.core.ui.action.TimestampOutputAction
 
token - Variable in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.DotParser
 
Token - Class in uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser
Describes the input token stream.
Token() - Constructor for class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.Token
 
token_source - Variable in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.DotParser
 
tokenImage - Static variable in interface uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.DotParserConstants
 
tokenImage - Variable in exception uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.ParseException
This is a reference to the "tokenImage" array of the generated parser within which the parse error occurred.
TokenMgrError - Error in uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser
 
TokenMgrError() - Constructor for error uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.TokenMgrError
 
TokenMgrError(String, int) - Constructor for error uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.TokenMgrError
 
TokenMgrError(boolean, int, int, int, String, char, int) - Constructor for error uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.TokenMgrError
 
ToldOWLClassHierarchyViewComponent - Class in org.protege.editor.owl.ui.clshierarchy
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Mar 21, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

A view that contains a JTree that displays a hierarchy of OWLClasses.

ToldOWLClassHierarchyViewComponent() - Constructor for class org.protege.editor.owl.ui.clshierarchy.ToldOWLClassHierarchyViewComponent
 
ToldReasonerFactory - Class in org.protege.editor.owl.model.inference
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 16-Apr-2007

ToldReasonerFactory() - Constructor for class org.protege.editor.owl.model.inference.ToldReasonerFactory
 
ToldSuperClassHierarchyViewComponent - Class in org.protege.editor.owl.ui.clshierarchy
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 14-Sep-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

ToldSuperClassHierarchyViewComponent() - Constructor for class org.protege.editor.owl.ui.clshierarchy.ToldSuperClassHierarchyViewComponent
 
TONESRepository - Class in org.protege.editor.owl.model.repository
Author: Matthew Horridge
The University Of Manchester
Information Management Group
Date: 18-Oct-2008

TONESRepository() - Constructor for class org.protege.editor.owl.model.repository.TONESRepository
 
TONESRepositoryFactory - Class in org.protege.editor.owl.model.repository
Author: Matthew Horridge
The University Of Manchester
Information Management Group
Date: 18-Oct-2008

TONESRepositoryFactory() - Constructor for class org.protege.editor.owl.model.repository.TONESRepositoryFactory
 
TOOL_TIP_DISMISS_DELAY - Static variable in class uk.ac.man.cs.mig.util.graph.ui.impl.DefaultGraphView
 
ToolBarActionComparator - Class in org.protege.editor.core.ui.action
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Mar 31, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

ToolBarActionComparator() - Constructor for class org.protege.editor.core.ui.action.ToolBarActionComparator
 
ToolBarActionPlugin - Interface in org.protege.editor.core.ui.action
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Mar 22, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

An ToolBarActionPlugin is the base class for all editorkit toolbar and view toolbar actions.

ToolBarActionPluginJPFImpl - Class in org.protege.editor.core.ui.action
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Mar 28, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

ToolBarActionPluginJPFImpl(EditorKit, IExtension) - Constructor for class org.protege.editor.core.ui.action.ToolBarActionPluginJPFImpl
 
toString() - Method in class org.coode.dlquery.DLQueryResultsSectionItem
 
toString() - Method in class org.protege.editor.core.editorkit.EditorKitDescriptor
 
toString() - Method in class org.protege.editor.core.ui.error.ErrorLog.ErrorLogEntry
 
toString() - Method in class org.protege.editor.core.ui.list.MList.TestItem
 
toString() - Method in class org.protege.editor.core.ui.list.RemovableObjectList.RemovableObjectListItem
 
toString() - Method in class org.protege.editor.owl.model.hierarchy.roots.Path
 
toString() - Method in class org.protege.editor.owl.model.hierarchy.tabbed.Edge
 
toString() - Method in class org.protege.editor.owl.model.library.AbstractOntologyLibrary
 
toString() - Method in class org.protege.editor.owl.ui.editor.AbstractRestrictionCreatorPanel.RestrictionCreator
 
toString() - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrame
 
toString() - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSection
 
toString() - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSectionRow
 
toString() - Method in class org.protege.editor.owl.ui.frame.AnnotationURIList.URIItem
 
toString() - Method in class org.protege.editor.owl.ui.metrics.Metric
 
toString() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.popup.OWLObjectPopupPage
 
toString() - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultGraphSelectionModel
Returns a string representation of the object.
toString() - Method in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.Token
Returns the image.
toString() - Method in class uk.ac.manchester.cs.factplusplus.protege.FaCTPlusPlusReasonerWrapper
 
TransferableOWLObject - Class in org.protege.editor.owl.ui.transfer
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 04-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

TransferableOWLObject(OWLModelManager, List<OWLObject>) - Constructor for class org.protege.editor.owl.ui.transfer.TransferableOWLObject
 
transmitSelection() - Method in class org.protege.editor.owl.ui.clshierarchy.AbstractOWLClassHierarchyViewComponent
 
transmitSelectionFromList() - Method in class org.protege.editor.owl.ui.selector.OWLEntitySelectorPanel
 
TriangularNode - Class in uk.ac.man.cs.mig.util.graph.graph.impl
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Jan 21, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

TriangularNode(Object) - Constructor for class uk.ac.man.cs.mig.util.graph.graph.impl.TriangularNode
Constructs a Node that represents the specified object.

U

UGLY_ICON - Static variable in class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizIcons
 
UIConstants - Interface in org.protege.editor.core.ui.util
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Mar 23, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

UIHelper - Class in org.protege.editor.owl.ui
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Apr 24, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

UIHelper(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.UIHelper
 
UIOptionsPage - Class in uk.ac.man.cs.mig.coode.owlviz.ui.options
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Jun 1, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

UIOptionsPage() - Constructor for class uk.ac.man.cs.mig.coode.owlviz.ui.options.UIOptionsPage
 
UIReasonerExceptionHandler - Class in org.protege.editor.owl.model
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 26-Nov-2007

UIReasonerExceptionHandler(OWLWorkspace) - Constructor for class org.protege.editor.owl.model.UIReasonerExceptionHandler
 
UIUtil - Class in org.protege.editor.core.ui.util
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Apr 2, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

UIUtil() - Constructor for class org.protege.editor.core.ui.util.UIUtil
 
uk.ac.man.cs.mig.coode.owlviz.apitest - package uk.ac.man.cs.mig.coode.owlviz.apitest
 
uk.ac.man.cs.mig.coode.owlviz.command - package uk.ac.man.cs.mig.coode.owlviz.command
 
uk.ac.man.cs.mig.coode.owlviz.export - package uk.ac.man.cs.mig.coode.owlviz.export
 
uk.ac.man.cs.mig.coode.owlviz.model - package uk.ac.man.cs.mig.coode.owlviz.model
 
uk.ac.man.cs.mig.coode.owlviz.ui - package uk.ac.man.cs.mig.coode.owlviz.ui
 
uk.ac.man.cs.mig.coode.owlviz.ui.exportwizard - package uk.ac.man.cs.mig.coode.owlviz.ui.exportwizard
 
uk.ac.man.cs.mig.coode.owlviz.ui.options - package uk.ac.man.cs.mig.coode.owlviz.ui.options
 
uk.ac.man.cs.mig.coode.owlviz.ui.popup - package uk.ac.man.cs.mig.coode.owlviz.ui.popup
 
uk.ac.man.cs.mig.coode.owlviz.ui.renderer - package uk.ac.man.cs.mig.coode.owlviz.ui.renderer
 
uk.ac.man.cs.mig.util.graph.controller - package uk.ac.man.cs.mig.util.graph.controller
 
uk.ac.man.cs.mig.util.graph.controller.impl - package uk.ac.man.cs.mig.util.graph.controller.impl
 
uk.ac.man.cs.mig.util.graph.event - package uk.ac.man.cs.mig.util.graph.event
 
uk.ac.man.cs.mig.util.graph.export - package uk.ac.man.cs.mig.util.graph.export
 
uk.ac.man.cs.mig.util.graph.export.impl - package uk.ac.man.cs.mig.util.graph.export.impl
 
uk.ac.man.cs.mig.util.graph.factory - package uk.ac.man.cs.mig.util.graph.factory
 
uk.ac.man.cs.mig.util.graph.factory.impl - package uk.ac.man.cs.mig.util.graph.factory.impl
 
uk.ac.man.cs.mig.util.graph.graph - package uk.ac.man.cs.mig.util.graph.graph
 
uk.ac.man.cs.mig.util.graph.graph.impl - package uk.ac.man.cs.mig.util.graph.graph.impl
 
uk.ac.man.cs.mig.util.graph.layout - package uk.ac.man.cs.mig.util.graph.layout
 
uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine - package uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine
 
uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser - package uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser
 
uk.ac.man.cs.mig.util.graph.layout.impl - package uk.ac.man.cs.mig.util.graph.layout.impl
 
uk.ac.man.cs.mig.util.graph.model - package uk.ac.man.cs.mig.util.graph.model
 
uk.ac.man.cs.mig.util.graph.model.impl - package uk.ac.man.cs.mig.util.graph.model.impl
 
uk.ac.man.cs.mig.util.graph.outputrenderer - package uk.ac.man.cs.mig.util.graph.outputrenderer
 
uk.ac.man.cs.mig.util.graph.outputrenderer.impl - package uk.ac.man.cs.mig.util.graph.outputrenderer.impl
 
uk.ac.man.cs.mig.util.graph.renderer - package uk.ac.man.cs.mig.util.graph.renderer
 
uk.ac.man.cs.mig.util.graph.renderer.impl - package uk.ac.man.cs.mig.util.graph.renderer.impl
 
uk.ac.man.cs.mig.util.graph.ui - package uk.ac.man.cs.mig.util.graph.ui
 
uk.ac.man.cs.mig.util.graph.ui.impl - package uk.ac.man.cs.mig.util.graph.ui.impl
 
uk.ac.man.cs.mig.util.okcanceldialog - package uk.ac.man.cs.mig.util.okcanceldialog
 
uk.ac.man.cs.mig.util.popup - package uk.ac.man.cs.mig.util.popup
 
uk.ac.man.cs.mig.util.popup.test - package uk.ac.man.cs.mig.util.popup.test
 
uk.ac.man.cs.mig.util.wizard - package uk.ac.man.cs.mig.util.wizard
 
uk.ac.manchester.cs.factplusplus.protege - package uk.ac.manchester.cs.factplusplus.protege
 
uncaughtException(Thread, Throwable) - Method in class org.protege.editor.core.ui.error.ErrorLog
 
undo() - Method in interface org.protege.editor.owl.model.history.HistoryManager
 
undo() - Method in class org.protege.editor.owl.model.history.HistoryManagerImpl
 
UndoAction - Class in org.protege.editor.owl.ui.action
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 03-Feb-2007

UndoAction() - Constructor for class org.protege.editor.owl.ui.action.UndoAction
 
UndoManagerListener - Interface in org.protege.editor.owl.model.history
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 20-May-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

uninstall() - Method in class org.protege.editor.owl.ui.clsdescriptioneditor.OWLDescriptionAutoCompleter
 
UNION_NAME - Static variable in class uk.ac.man.cs.mig.coode.owlviz.ui.renderer.OWLClsNodeRenderer
 
unloadOntologies(Set<OWLOntology>) - Method in class org.protege.editor.owl.model.inference.NoOpReasoner
 
unregisterOWLEntityDisplayProvider(OWLEntityDisplayProvider) - Method in class org.protege.editor.owl.model.OWLWorkspace
 
unregisterViews(WorkspaceViewsTab) - Method in class org.protege.editor.core.ui.workspace.WorkspaceViewManager
 
update() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.byannotation.AnnotationSelectorPanel
 
update() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.byprofile.ProfileSelectorPanel
 
update() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.byreference.SelectSignaturePanel
 
update() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.bytype.AxiomTypeSelectorPanel
 
update() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.common.SignatureDependentSelectionPreviewPanel
 
update() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.MoveAxiomsKitConfigurationPanel
 
update() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.SelectAxiomsPanel
 
UpdateChecker - Class in org.protege.editor.core.update
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 25-Aug-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

UpdateChecker(URL, Bundle) - Constructor for class org.protege.editor.core.update.UpdateChecker
 
updateEdgeColor() - Static method in class uk.ac.man.cs.mig.util.graph.renderer.impl.DefaultEdgeRenderer
 
UpdateException - Exception in org.protege.editor.core.update
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Nov 4, 2008

UpdateException(String, URL, String) - Constructor for exception org.protege.editor.core.update.UpdateException
 
updateHeader(OWLObject) - Method in class org.protege.editor.owl.ui.view.AbstractOWLSelectionViewComponent
 
updateInfo() - Method in class uk.ac.man.cs.mig.util.graph.controller.impl.DefaultVisualisedObjectManager
Forces an update of the information pertaining to whether an object's children and parents are visible.
updateInfo() - Method in interface uk.ac.man.cs.mig.util.graph.controller.VisualisedObjectManager
Forces an update of the information pertaining to whether an object's children and parents are visible.
updateInterface() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.options.DisplayOptionsPage
 
updateInterface() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.options.DotProcessPathPage
Deprecated.  
updateInterface() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.options.GlobalOptionsPage
 
updateInterface() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.options.LayoutDirectionOptionsPage
 
updateInterface() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.options.LayoutSpacingOptionsPage
Deprecated.  
updateInterface() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.options.ModeOptionsPage
 
updateInterface() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.options.OptionsDialog
 
updateInterface() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.options.OptionsPage
 
updateInterface() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.options.UIOptionsPage
 
updateLibraryManager() - Method in class org.protege.editor.owl.ui.library.OntologyLibraryPanel
Updates the library manager and saves its state
UpdateLineColumn(char) - Method in class uk.ac.man.cs.mig.util.graph.layout.dotlayoutengine.dotparser.SimpleCharStream
 
updateMetric() - Method in class org.protege.editor.owl.ui.metrics.AbstractIntegerMetric
 
updateMetric() - Method in class org.protege.editor.owl.ui.metrics.Metric
 
updatePreview() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.common.SignatureDependentSelectionPreviewPanel
 
updateRegisteredActions() - Method in class org.protege.editor.owl.ui.view.AbstractOWLSelectionViewComponent
 
updateRendering(OWLEntity) - Method in interface org.protege.editor.owl.model.cache.OWLEntityRenderingCache
 
updateRendering(OWLEntity) - Method in class org.protege.editor.owl.model.cache.OWLEntityRenderingCacheImpl
 
updateScale() - Method in class uk.ac.man.cs.mig.util.graph.ui.impl.DefaultThumbnailView
 
updateSignature() - Method in class org.protege.editor.owl.ui.ontology.wizard.move.common.SignatureDependentSelectionPreviewPanel
 
UpdatesProvider - Class in org.protege.editor.core.update
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Nov 6, 2008

UpdatesProvider() - Constructor for class org.protege.editor.core.update.UpdatesProvider
 
updateState() - Method in class org.protege.editor.owl.ui.action.AbstractDeleteEntityAction
 
updateState() - Method in class org.protege.editor.owl.ui.action.AddCoveringAxiomAction
 
updateState() - Method in class org.protege.editor.owl.ui.action.ConvertToPrimitiveClassAction
 
updateState() - Method in class org.protege.editor.owl.ui.action.SelectedOWLClassAction
 
updateState() - Method in class org.protege.editor.owl.ui.clshierarchy.AddSiblingClassAction
Deprecated.  
updateState() - Method in class org.protege.editor.owl.ui.clshierarchy.ShowUsageAction
 
updateState() - Method in class org.protege.editor.owl.ui.framelist.CreateClosureAxiomAction
 
updateState() - Method in class org.protege.editor.owl.ui.framelist.CreateNewEquivalentClassAction
 
updateState() - Method in class org.protege.editor.owl.ui.framelist.MoveAxiomsToOntologyAction
 
updateState() - Method in class org.protege.editor.owl.ui.framelist.OWLFrameListPopupMenuAction
This will be called when the selection in the list changes in order for the action to enable/disable itself depending upon what is selected.
updateState() - Method in class org.protege.editor.owl.ui.framelist.PullIntoActiveOntologyAction
 
updateState() - Method in class org.protege.editor.owl.ui.framelist.SwitchToDefiningOntologyAction
 
updateState() - Method in class org.protege.editor.owl.ui.view.DeleteIndividualAction
 
updateState() - Method in class org.protege.editor.owl.ui.view.OWLSelectionViewAction
 
updateState() - Method in class uk.ac.man.cs.mig.coode.owlviz.command.ExportCommand
 
updateState() - Method in class uk.ac.man.cs.mig.coode.owlviz.command.HideAllClassesCommand
 
updateState() - Method in class uk.ac.man.cs.mig.coode.owlviz.command.HideClassCommand
 
updateState() - Method in class uk.ac.man.cs.mig.coode.owlviz.command.HideClassesPastRadiusCommand
 
updateState() - Method in class uk.ac.man.cs.mig.coode.owlviz.command.HideSubclassesCommand
 
updateState() - Method in class uk.ac.man.cs.mig.coode.owlviz.command.ShowAllClassesCommand
 
updateState() - Method in class uk.ac.man.cs.mig.coode.owlviz.command.ShowClassCommand
 
updateState() - Method in class uk.ac.man.cs.mig.coode.owlviz.command.ShowSubclassesCommand
 
updateState() - Method in class uk.ac.man.cs.mig.coode.owlviz.command.ShowSuperclassesCommand
 
updateTitle() - Method in class org.protege.editor.core.ui.workspace.WorkspaceFrame
 
updateUI() - Method in class org.protege.editor.core.ui.split.ViewSplitPane
 
updateUI() - Method in class org.protege.editor.core.ui.tabbedpane.ViewTabbedPane
 
updateUI() - Method in class org.protege.editor.owl.ui.framelist.OWLFrameList2
 
updateUI() - Method in class org.protege.editor.owl.ui.tree.OWLObjectTree
 
updateView(OWLClass) - Method in class org.protege.editor.owl.ui.clshierarchy.AbstractOWLClassHierarchyViewComponent
 
updateView(OWLClass) - Method in class org.protege.editor.owl.ui.clshierarchy.AbstractSuperClassHierarchyViewComponent
 
updateView(OWLOntology) - Method in class org.protege.editor.owl.ui.metrics.AxiomMetricsViewComponent
 
updateView(OWLOntology) - Method in class org.protege.editor.owl.ui.metrics.MetricsPanel
 
updateView(OWLIndividual) - Method in class org.protege.editor.owl.ui.OWLIndividualListComponent
 
updateView(OWLOntology) - Method in class org.protege.editor.owl.ui.view.AbstractActiveOntologyViewComponent
 
updateView(OWLOntology) - Method in class org.protege.editor.owl.ui.view.AbstractOntologyRenderingViewComponent
 
updateView() - Method in class org.protege.editor.owl.ui.view.AbstractOWLClassViewComponent
 
updateView(OWLClass) - Method in class org.protege.editor.owl.ui.view.AbstractOWLClassViewComponent
This method is called to request that the view is updated with the specified class.
updateView() - Method in class org.protege.editor.owl.ui.view.AbstractOWLIndividualViewComponent
 
updateView(OWLIndividual) - Method in class org.protege.editor.owl.ui.view.AbstractOWLIndividualViewComponent
 
updateView(O) - Method in class org.protege.editor.owl.ui.view.AbstractOWLPropertyHierarchyViewComponent
 
updateView() - Method in class org.protege.editor.owl.ui.view.AbstractOWLPropertyViewComponent
 
updateView(O) - Method in class org.protege.editor.owl.ui.view.AbstractOWLPropertyViewComponent
 
updateView() - Method in class org.protege.editor.owl.ui.view.AbstractOWLSelectionViewComponent
Request that the view is updated to display the current selection.
updateView(OWLOntology) - Method in class org.protege.editor.owl.ui.view.AnonymousClassesView
 
updateView(OWLOntology) - Method in class org.protege.editor.owl.ui.view.InferredAxiomsViewComponent
 
updateView() - Method in class org.protege.editor.owl.ui.view.ManchesterSyntaxFrameView
 
updateView(OWLClass) - Method in class org.protege.editor.owl.ui.view.OWLClassAnnotationsViewComponent
This method is called to request that the view is updated with the specified class.
updateView(OWLClass) - Method in class org.protege.editor.owl.ui.view.OWLClassDescriptionViewComponent
This method is called to request that the view is updated with the specified class.
updateView(OWLClass) - Method in class org.protege.editor.owl.ui.view.OWLClassUsageViewComponent
 
updateView(OWLDataProperty) - Method in class org.protege.editor.owl.ui.view.OWLDataPropertyAnnotationsViewComponent
 
updateView(OWLDataProperty) - Method in class org.protege.editor.owl.ui.view.OWLDataPropertyCharacteristicsViewComponent
 
updateView(OWLDataProperty) - Method in class org.protege.editor.owl.ui.view.OWLDataPropertyDescriptionViewComponent
 
updateView(OWLDataProperty) - Method in class org.protege.editor.owl.ui.view.OWLDataPropertyDomainsAndRangesViewComponent
 
updateView(OWLDataProperty) - Method in class org.protege.editor.owl.ui.view.OWLDataPropertyUsageViewComponent
 
updateView(OWLClass) - Method in class org.protege.editor.owl.ui.view.OWLDisjointClassesViewComponent
This method is called to request that the view is updated with the specified class.
updateView() - Method in class org.protege.editor.owl.ui.view.OWLEntityUsageViewComponent
 
updateView(OWLOntology) - Method in class org.protege.editor.owl.ui.view.OWLGeneralAxiomsViewComponent
 
updateView(OWLIndividual) - Method in class org.protege.editor.owl.ui.view.OWLIndividualAnnotationsViewComponent
 
updateView(OWLIndividual) - Method in class org.protege.editor.owl.ui.view.OWLIndividualDescriptionViewComponent
 
updateView(OWLIndividual) - Method in class org.protege.editor.owl.ui.view.OWLIndividualListViewComponent
 
updateView(OWLIndividual) - Method in class org.protege.editor.owl.ui.view.OWLIndividualPropertyAssertionsViewComponent
 
updateView(OWLIndividual) - Method in class org.protege.editor.owl.ui.view.OWLIndividualsByClassViewComponent
 
updateView(OWLIndividual) - Method in class org.protege.editor.owl.ui.view.OWLIndividualsByInferredTypeViewComponent
 
updateView(OWLIndividual) - Method in class org.protege.editor.owl.ui.view.OWLIndividualUsageViewComponent
 
updateView(OWLObjectProperty) - Method in class org.protege.editor.owl.ui.view.OWLObjectPropertyAnnotationsViewComponent
 
updateView(OWLObjectProperty) - Method in class org.protege.editor.owl.ui.view.OWLObjectPropertyCharacteristicsViewComponent
 
updateView(OWLObjectProperty) - Method in class org.protege.editor.owl.ui.view.OWLObjectPropertyDescriptionViewComponent
 
updateView(OWLObjectProperty) - Method in class org.protege.editor.owl.ui.view.OWLObjectPropertyDomainsAndRangesViewComponent
 
updateView(OWLObjectProperty) - Method in class org.protege.editor.owl.ui.view.OWLObjectPropertyUsageViewComponent
 
updateView(OWLOntology) - Method in class org.protege.editor.owl.ui.view.SWRLRulesViewComponent
 
updateView(OWLClass) - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizAxiomView
 
updateView(OWLClass) - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizView
 
updateViewContentAndHeader() - Method in class org.protege.editor.owl.ui.view.AbstractOWLSelectionViewComponent
 
updateViewContentAndHeader() - Method in class org.protege.editor.owl.ui.view.OWLAxiomAnnotationsView
 
URI_KEY - Static variable in class org.protege.editor.owl.OWLEditorKit
 
URIUtilities - Class in org.protege.editor.owl.model.util
 
URIUtilities() - Constructor for class org.protege.editor.owl.model.util.URIUtilities
 
URLImportFileVerifier - Class in org.protege.editor.owl.ui.ontology.imports.wizard
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 13-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

URLImportFileVerifier(URL) - Constructor for class org.protege.editor.owl.ui.ontology.imports.wizard.URLImportFileVerifier
 
URLPage - Class in org.protege.editor.owl.ui.ontology.imports.wizard
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 12-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

URLPage(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.ontology.imports.wizard.URLPage
 
URLPanel - Class in org.protege.editor.core.ui.util
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 12-Jun-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

URLPanel() - Constructor for class org.protege.editor.core.ui.util.URLPanel
 
urlPanel - Variable in class org.protege.editor.owl.ui.ontology.imports.wizard.URLPage
 
UsageByEntityTreeModel - Class in org.protege.editor.owl.ui.usage
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 21-Feb-2007

UsageByEntityTreeModel(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.usage.UsageByEntityTreeModel
 
UsageByEntityTreeModel(OWLEditorKit, OWLEntity) - Constructor for class org.protege.editor.owl.ui.usage.UsageByEntityTreeModel
 
UsageByEntityTreeModel.UsageTreeNode - Class in org.protege.editor.owl.ui.usage
 
UsageByEntityTreeModel.UsageTreeNode(OWLOntology, OWLAxiom) - Constructor for class org.protege.editor.owl.ui.usage.UsageByEntityTreeModel.UsageTreeNode
 
UsageFilter - Enum in org.protege.editor.owl.ui.usage
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Oct 23, 2008

UsagePanel - Class in org.protege.editor.owl.ui.usage
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 21-Feb-2007

UsagePanel(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.usage.UsagePanel
 
UsagePreferences - Class in org.protege.editor.owl.ui.usage
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: May 6, 2008

UsagePreferences() - Constructor for class org.protege.editor.owl.ui.usage.UsagePreferences
 
UsageTree - Class in org.protege.editor.owl.ui.usage
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 21-Feb-2007

UsageTree(OWLEditorKit) - Constructor for class org.protege.editor.owl.ui.usage.UsageTree
 
UsageTreeModel - Interface in org.protege.editor.owl.ui.usage
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Oct 23, 2008

USE_EXPRESSION_COMPLETION_KEY - Static variable in class org.protege.editor.owl.ui.clsdescriptioneditor.ExpressionEditorPreferences
 
USE_REGULAR_EXPRESSIONS_KEY - Static variable in class org.protege.editor.owl.model.find.EntityFinderPreferences
 
USE_THAT_KEYWORD - Static variable in class org.protege.editor.owl.ui.renderer.OWLRendererPreferences
 
useDefaultBaseURI() - Method in class org.protege.editor.owl.model.entity.CustomOWLEntityFactory
 
useDefaultBaseURI() - Static method in class org.protege.editor.owl.model.entity.EntityCreationPreferences
 
USER_CREATABLE_PARAM - Static variable in class org.protege.editor.core.ui.view.ViewComponentPluginJPFImpl
 
UserRepositoryURIMapper - Class in org.protege.editor.owl.model.io
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Sep 1, 2008

A custom URIMapper.

UserRepositoryURIMapper(OWLModelManager) - Constructor for class org.protege.editor.owl.model.io.UserRepositoryURIMapper
 
UserResolvedURIMapper - Class in org.protege.editor.owl.model.io
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Sep 1, 2008

A custom URIMapper.

UserResolvedURIMapper(MissingImportHandler) - Constructor for class org.protege.editor.owl.model.io.UserResolvedURIMapper
 

V

validateData() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.ClassRadiusDialog
This method is called when the OK (or approve button) is pressed, but before the dialog is closed.
validateData() - Method in class uk.ac.man.cs.mig.util.okcanceldialog.OKCancelDialog
This method is called when the OK (or approve button) is pressed, but before the dialog is closed.
validateOptions() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.options.DisplayOptionsPage
 
validateOptions() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.options.DotProcessPathPage
Deprecated.  
validateOptions() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.options.GlobalOptionsPage
 
validateOptions() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.options.LayoutDirectionOptionsPage
 
validateOptions() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.options.LayoutSpacingOptionsPage
Deprecated.  
validateOptions() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.options.ModeOptionsPage
 
validateOptions() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.options.OptionsPage
 
validateOptions() - Method in class uk.ac.man.cs.mig.coode.owlviz.ui.options.UIOptionsPage
 
valueOf(String) - Static method in enum org.protege.editor.core.ModelManagerEvent.EventType
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.protege.editor.core.ui.about.PluginInfoTableModel.Columns
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.protege.editor.owl.model.event.EventType
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.protege.editor.owl.ui.usage.UsageFilter
Returns the enum constant of this type with the specified name.
values() - Static method in enum org.protege.editor.core.ModelManagerEvent.EventType
Returns an array containing the constants of this enum type, in the order they're declared.
values() - Static method in enum org.protege.editor.core.ui.about.PluginInfoTableModel.Columns
Returns an array containing the constants of this enum type, in the order they're declared.
values() - Static method in enum org.protege.editor.owl.model.event.EventType
Returns an array containing the constants of this enum type, in the order they're declared.
values() - Static method in enum org.protege.editor.owl.ui.usage.UsageFilter
Returns an array containing the constants of this enum type, in the order they're declared.
VerifiedInputEditor - Interface in org.protege.editor.core.ui.util
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Mar 14, 2008

verifiedStatusChanged(boolean) - Method in interface org.protege.editor.core.ui.util.InputVerificationStatusChangedListener
 
VerifyingOptionPane - Class in org.protege.editor.core.ui.util
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Mar 14, 2008

A JOptionPane that allows us to disable options to allow for user input verification.

VerifyingOptionPane(JComponent) - Constructor for class org.protege.editor.core.ui.util.VerifyingOptionPane
 
VerifyingOptionPane(JComponent, int, int) - Constructor for class org.protege.editor.core.ui.util.VerifyingOptionPane
 
verifySelection(Set<? extends OWLEntity>) - Method in class org.protege.editor.owl.model.OWLWorkspace
 
verifySelection() - Method in class org.protege.editor.owl.model.OWLWorkspace
 
VERSION_PROPERTY_NAME - Static variable in class org.protege.editor.core.update.PluginInfoDocument
 
View - Class in org.protege.editor.core.ui.view
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Mar 19, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

Represents a view on a model.

View(ViewComponentPlugin, Workspace) - Constructor for class org.protege.editor.core.ui.view.View
Creates a View that will display the ViewComponent instantiated by the specified tab view plugin.
VIEW_CONFIGURATIONS_FOLDER - Static variable in class org.protege.editor.core.FileManager
 
VIEW_ID_PARAM - Static variable in class org.protege.editor.core.ui.view.ViewActionPluginJPFImpl
 
VIEW_LAYOUT_PREFERENCES_ID - Static variable in class org.protege.editor.core.ui.view.ViewsPane
 
ViewAction - Class in org.protege.editor.core.ui.view
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Mar 29, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

ViewAction() - Constructor for class org.protege.editor.core.ui.view.ViewAction
 
ViewActionAdapter - Class in org.protege.editor.core.ui.view
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 17-May-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

ViewActionAdapter(DisposableAction) - Constructor for class org.protege.editor.core.ui.view.ViewActionAdapter
 
ViewActionPlugin - Interface in org.protege.editor.core.ui.view
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Mar 28, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

A ViewActionPlugin is a ToolBarActionPlugin that appears on a specific type of View.

ViewActionPluginJPFImpl - Class in org.protege.editor.core.ui.view
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Mar 28, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

ViewActionPluginJPFImpl(EditorKit, View, IExtension) - Constructor for class org.protege.editor.core.ui.view.ViewActionPluginJPFImpl
 
ViewBanner - Class in org.protege.editor.core.ui.view
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 22-May-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

A component that displays a "banner" with white text and a coloured background.

ViewBanner(String, Color) - Constructor for class org.protege.editor.core.ui.view.ViewBanner
 
ViewBar - Class in org.protege.editor.core.ui.view
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 22-May-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

A component that comprises a ViewBanner and a toolbar that holds actions.

ViewBar(String, Color) - Constructor for class org.protege.editor.core.ui.view.ViewBar
 
ViewBarComponent - Class in org.protege.editor.core.ui.view
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 22-May-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

A component that holds a view component and a view bar above the component.

ViewBarComponent(String, Color, JComponent) - Constructor for class org.protege.editor.core.ui.view.ViewBarComponent
 
ViewButtonUI - Class in org.protege.editor.core.ui.view.button
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Mar 24, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

ViewButtonUI() - Constructor for class org.protege.editor.core.ui.view.button.ViewButtonUI
 
ViewClipboard - Class in org.protege.editor.owl.ui.view
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 07-Oct-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

ViewComponent - Class in org.protege.editor.core.ui.view
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Mar 21, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

A ViewComponent is the plugin part to a View.

ViewComponent() - Constructor for class org.protege.editor.core.ui.view.ViewComponent
 
ViewComponentFactory - Class in org.protege.editor.core.ui.view
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 26-Sep-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

ViewComponentFactory(Workspace) - Constructor for class org.protege.editor.core.ui.view.ViewComponentFactory
 
ViewComponentPlugin - Interface in org.protege.editor.core.ui.view
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Mar 18, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

ViewComponentPluginAdapter - Class in org.protege.editor.core.ui.view
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 03-Jul-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

ViewComponentPluginAdapter() - Constructor for class org.protege.editor.core.ui.view.ViewComponentPluginAdapter
 
ViewComponentPluginJPFImpl - Class in org.protege.editor.core.ui.view
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Mar 29, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

ViewComponentPluginJPFImpl(Workspace, IExtension) - Constructor for class org.protege.editor.core.ui.view.ViewComponentPluginJPFImpl
 
ViewComponentPluginLoader - Class in org.protege.editor.core.ui.view
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Mar 18, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

ViewComponentPluginLoader(Workspace) - Constructor for class org.protege.editor.core.ui.view.ViewComponentPluginLoader
 
ViewComponentPropertiesFactory - Class in org.protege.editor.core.ui.view
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 26-Sep-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

ViewComponentPropertiesFactory() - Constructor for class org.protege.editor.core.ui.view.ViewComponentPropertiesFactory
 
ViewContainer - Class in org.protege.editor.core.ui.view
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Mar 20, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

A ViewContainer holds one component which is either a View or a split pane which contains two Views.

ViewContainer(View) - Constructor for class org.protege.editor.core.ui.view.ViewContainer
 
ViewContainer(ViewContainer, ViewContainer, int) - Constructor for class org.protege.editor.core.ui.view.ViewContainer
 
ViewHolder - Class in org.protege.editor.core.ui.view
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Apr 7, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

ViewHolder(String, String, JSplitPane) - Constructor for class org.protege.editor.core.ui.view.ViewHolder
 
ViewNodePanel - Class in org.protege.editor.core.ui.workspace.views
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 26-Sep-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

ViewNodePanel(WorkspaceViewsTab) - Constructor for class org.protege.editor.core.ui.workspace.views.ViewNodePanel
 
ViewsPane - Class in org.protege.editor.core.ui.view
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: 15-May-2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

A panel that contains views.

ViewsPane(Workspace, ViewsPaneMemento) - Constructor for class org.protege.editor.core.ui.view.ViewsPane
 
ViewsPaneMemento - Class in org.protege.editor.core.ui.view
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 02-Mar-2007

ViewsPaneMemento(URL, String) - Constructor for class org.protege.editor.core.ui.view.ViewsPaneMemento
 
ViewsPaneMemento(URL, String, boolean) - Constructor for class org.protege.editor.core.ui.view.ViewsPaneMemento
 
ViewsPaneMemento(WorkspaceTab) - Constructor for class org.protege.editor.core.ui.view.ViewsPaneMemento
 
ViewSplitPane - Class in org.protege.editor.core.ui.split
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Mar 19, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

This is a customisation of a JSplitPane that modifies the split pane dividers and borders.

ViewSplitPane(int) - Constructor for class org.protege.editor.core.ui.split.ViewSplitPane
 
ViewSplitPaneDivider - Class in org.protege.editor.core.ui.split
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Mar 19, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

ViewSplitPaneDivider(BasicSplitPaneUI) - Constructor for class org.protege.editor.core.ui.split.ViewSplitPaneDivider
 
ViewSplitPaneUI - Class in org.protege.editor.core.ui.split
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Mar 19, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

ViewSplitPaneUI() - Constructor for class org.protege.editor.core.ui.split.ViewSplitPaneUI
 
ViewTabbedPane - Class in org.protege.editor.core.ui.tabbedpane
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Mar 23, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

ViewTabbedPane() - Constructor for class org.protege.editor.core.ui.tabbedpane.ViewTabbedPane
 
ViewTabbedPaneUI - Class in org.protege.editor.core.ui.tabbedpane
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Mar 23, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

ViewTabbedPaneUI() - Constructor for class org.protege.editor.core.ui.tabbedpane.ViewTabbedPaneUI
 
ViewToolBarActionPluginLoader - Class in org.protege.editor.core.ui.view
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Mar 28, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

ViewToolBarActionPluginLoader(EditorKit, View) - Constructor for class org.protege.editor.core.ui.view.ViewToolBarActionPluginLoader
 
VisibilityManagerOntologySelectionStrategyAction - Class in org.protege.editor.owl.ui.action
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Jun 6, 2008

VisibilityManagerOntologySelectionStrategyAction() - Constructor for class org.protege.editor.owl.ui.action.VisibilityManagerOntologySelectionStrategyAction
 
VisibilityManagerSelectionStrategy - Class in org.protege.editor.owl.model.selection.ontologies
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Jun 6, 2008

VisibilityManagerSelectionStrategy(OntologyVisibilityManager) - Constructor for class org.protege.editor.owl.model.selection.ontologies.VisibilityManagerSelectionStrategy
 
VISIBLE - Static variable in interface org.protege.editor.core.ui.view.ViewComponentPlugin
 
VISIBLE_TABS_PREFERENCE_KEY - Static variable in class org.protege.editor.core.ui.workspace.TabbedWorkspaceStateManager
 
visit(OWLDescriptionNodeDifference) - Method in class org.coode.dlquery.OWLDescriptionNodeQueryVisitor
 
visit(OWLDescriptionNodeUnion) - Method in class org.coode.dlquery.OWLDescriptionNodeQueryVisitor
 
visit(OWLDescriptionNodePossibly) - Method in class org.coode.dlquery.OWLDescriptionNodeQueryVisitor
 
visit(OWLDescriptionLeafNode) - Method in class org.coode.dlquery.OWLDescriptionNodeQueryVisitor
 
visit(OWLSubClassAxiom) - Method in class org.protege.editor.owl.model.description.anonymouscls.ADCFactory
 
visit(OWLEquivalentClassesAxiom) - Method in class org.protege.editor.owl.model.description.anonymouscls.ADCFactory
 
visit(OWLOntologyAnnotationAxiom) - Method in class org.protege.editor.owl.model.description.anonymouscls.ADCFactory
 
visit(OWLDescriptionNodeDifference) - Method in interface org.protege.editor.owl.model.description.OWLDescriptionNodeVisitor
 
visit(OWLDescriptionNodeUnion) - Method in interface org.protege.editor.owl.model.description.OWLDescriptionNodeVisitor
 
visit(OWLDescriptionLeafNode) - Method in interface org.protege.editor.owl.model.description.OWLDescriptionNodeVisitor
 
visit(OWLDescriptionNodePossibly) - Method in interface org.protege.editor.owl.model.description.OWLDescriptionNodeVisitor
 
visit(AddAxiom) - Method in class org.protege.editor.owl.model.history.ReverseChangeGenerator
 
visit(RemoveAxiom) - Method in class org.protege.editor.owl.model.history.ReverseChangeGenerator
 
visit(SetOntologyURI) - Method in class org.protege.editor.owl.model.history.ReverseChangeGenerator
 
visit(OWLClass) - Method in class org.protege.editor.owl.model.selection.FilteringOWLSelectionModelListener
 
visit(OWLObjectProperty) - Method in class org.protege.editor.owl.model.selection.FilteringOWLSelectionModelListener
 
visit(OWLDataProperty) - Method in class org.protege.editor.owl.model.selection.FilteringOWLSelectionModelListener
 
visit(OWLIndividual) - Method in class org.protege.editor.owl.model.selection.FilteringOWLSelectionModelListener
 
visit(OWLDataType) - Method in class org.protege.editor.owl.model.selection.FilteringOWLSelectionModelListener
 
visit(OWLClass) - Method in class org.protege.editor.owl.model.util.ClosureAxiomFactory
 
visit(OWLObjectIntersectionOf) - Method in class org.protege.editor.owl.model.util.ClosureAxiomFactory
 
visit(OWLObjectMinCardinalityRestriction) - Method in class org.protege.editor.owl.model.util.ClosureAxiomFactory
 
visit(OWLObjectExactCardinalityRestriction) - Method in class org.protege.editor.owl.model.util.ClosureAxiomFactory
 
visit(OWLObjectSomeRestriction) - Method in class org.protege.editor.owl.model.util.ClosureAxiomFactory
 
visit(OWLClass) - Method in class org.protege.editor.owl.model.util.CoveringAxiomFactory
 
visit(OWLObjectIntersectionOf) - Method in class org.protege.editor.owl.model.util.NestedIntersectionFlattener
 
visit(OWLDataAllRestriction) - Method in class org.protege.editor.owl.model.util.NestedIntersectionFlattener
 
visit(OWLDataSomeRestriction) - Method in class org.protege.editor.owl.model.util.NestedIntersectionFlattener
 
visit(OWLDataValueRestriction) - Method in class org.protege.editor.owl.model.util.NestedIntersectionFlattener
 
visit(OWLObjectAllRestriction) - Method in class org.protege.editor.owl.model.util.NestedIntersectionFlattener
 
visit(OWLObjectSomeRestriction) - Method in class org.protege.editor.owl.model.util.NestedIntersectionFlattener
 
visit(OWLObjectValueRestriction) - Method in class org.protege.editor.owl.model.util.NestedIntersectionFlattener
 
visit(OWLObjectComplementOf) - Method in class org.protege.editor.owl.model.util.NestedIntersectionFlattener
 
visit(OWLObjectUnionOf) - Method in class org.protege.editor.owl.model.util.NestedIntersectionFlattener
 
visit(OWLClass) - Method in class org.protege.editor.owl.model.util.NestedIntersectionFlattener
 
visit(OWLObjectOneOf) - Method in class org.protege.editor.owl.model.util.NestedIntersectionFlattener
 
visit(OWLObjectMinCardinalityRestriction) - Method in class org.protege.editor.owl.model.util.NestedIntersectionFlattener
 
visit(OWLObjectExactCardinalityRestriction) - Method in class org.protege.editor.owl.model.util.NestedIntersectionFlattener
 
visit(OWLObjectMaxCardinalityRestriction) - Method in class org.protege.editor.owl.model.util.NestedIntersectionFlattener
 
visit(OWLObjectSelfRestriction) - Method in class org.protege.editor.owl.model.util.NestedIntersectionFlattener
 
visit(OWLDataMinCardinalityRestriction) - Method in class org.protege.editor.owl.model.util.NestedIntersectionFlattener
 
visit(OWLDataExactCardinalityRestriction) - Method in class org.protege.editor.owl.model.util.NestedIntersectionFlattener
 
visit(OWLDataMaxCardinalityRestriction) - Method in class org.protege.editor.owl.model.util.NestedIntersectionFlattener
 
visit(OWLObjectSomeRestriction) - Method in class org.protege.editor.owl.model.util.ObjectSomeRestrictionFillerExtractor
 
visit(OWLObjectValueRestriction) - Method in class org.protege.editor.owl.model.util.ObjectSomeRestrictionFillerExtractor
 
visit(OWLObjectIntersectionOf) - Method in class org.protege.editor.owl.model.util.RestrictedPropertyExtractor
 
visit(OWLObjectComplementOf) - Method in class org.protege.editor.owl.model.util.RestrictedPropertyExtractor
 
visit(OWLObjectUnionOf) - Method in class org.protege.editor.owl.model.util.RestrictedPropertyExtractor
 
visit(OWLDataAllRestriction) - Method in class org.protege.editor.owl.model.util.RestrictedPropertyExtractor
 
visit(OWLDataSomeRestriction) - Method in class org.protege.editor.owl.model.util.RestrictedPropertyExtractor
 
visit(OWLDataValueRestriction) - Method in class org.protege.editor.owl.model.util.RestrictedPropertyExtractor
 
visit(OWLObjectAllRestriction) - Method in class org.protege.editor.owl.model.util.RestrictedPropertyExtractor
 
visit(OWLObjectSomeRestriction) - Method in class org.protege.editor.owl.model.util.RestrictedPropertyExtractor
 
visit(OWLObjectValueRestriction) - Method in class org.protege.editor.owl.model.util.RestrictedPropertyExtractor
 
visit(OWLObjectMinCardinalityRestriction) - Method in class org.protege.editor.owl.model.util.RestrictedPropertyExtractor
 
visit(OWLObjectExactCardinalityRestriction) - Method in class org.protege.editor.owl.model.util.RestrictedPropertyExtractor
 
visit(OWLObjectMaxCardinalityRestriction) - Method in class org.protege.editor.owl.model.util.RestrictedPropertyExtractor
 
visit(OWLObjectSelfRestriction) - Method in class org.protege.editor.owl.model.util.RestrictedPropertyExtractor
 
visit(OWLDataMinCardinalityRestriction) - Method in class org.protege.editor.owl.model.util.RestrictedPropertyExtractor
 
visit(OWLDataExactCardinalityRestriction) - Method in class org.protege.editor.owl.model.util.RestrictedPropertyExtractor
 
visit(OWLDataMaxCardinalityRestriction) - Method in class org.protege.editor.owl.model.util.RestrictedPropertyExtractor
 
visit(OWLDataAllRestriction) - Method in class org.protege.editor.owl.model.util.SomeRestrictionPropertyExtractor
 
visit(OWLDataCardinalityRestriction) - Method in class org.protege.editor.owl.model.util.SomeRestrictionPropertyExtractor
 
visit(OWLObjectAllRestriction) - Method in class org.protege.editor.owl.model.util.SomeRestrictionPropertyExtractor
 
visit(OWLObjectCardinalityRestriction) - Method in class org.protege.editor.owl.model.util.SomeRestrictionPropertyExtractor
 
visit(OWLObjectValueRestriction) - Method in class org.protege.editor.owl.model.util.SomeRestrictionPropertyExtractor
 
visit(OWLDataValueRestriction) - Method in class org.protege.editor.owl.model.util.SomeRestrictionPropertyExtractor
 
visit(OWLDataSomeRestriction) - Method in class org.protege.editor.owl.model.util.SomeRestrictionPropertyExtractor
 
visit(OWLAntiSymmetricObjectPropertyAxiom) - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSection
 
visit(OWLAxiomAnnotationAxiom) - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSection
 
visit(OWLClassAssertionAxiom) - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSection
 
visit(OWLDataPropertyAssertionAxiom) - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSection
 
visit(OWLDataPropertyDomainAxiom) - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSection
 
visit(OWLDataPropertyRangeAxiom) - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSection
 
visit(OWLDataSubPropertyAxiom) - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSection
 
visit(OWLDeclarationAxiom) - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSection
 
visit(OWLDifferentIndividualsAxiom) - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSection
 
visit(OWLDisjointClassesAxiom) - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSection
 
visit(OWLDisjointDataPropertiesAxiom) - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSection
 
visit(OWLDisjointObjectPropertiesAxiom) - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSection
 
visit(OWLDisjointUnionAxiom) - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSection
 
visit(OWLEntityAnnotationAxiom) - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSection
 
visit(OWLEquivalentClassesAxiom) - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSection
 
visit(OWLEquivalentDataPropertiesAxiom) - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSection
 
visit(OWLEquivalentObjectPropertiesAxiom) - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSection
 
visit(OWLFunctionalDataPropertyAxiom) - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSection
 
visit(OWLFunctionalObjectPropertyAxiom) - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSection
 
visit(OWLImportsDeclaration) - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSection
 
visit(OWLInverseFunctionalObjectPropertyAxiom) - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSection
 
visit(OWLInverseObjectPropertiesAxiom) - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSection
 
visit(OWLIrreflexiveObjectPropertyAxiom) - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSection
 
visit(OWLNegativeDataPropertyAssertionAxiom) - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSection
 
visit(OWLNegativeObjectPropertyAssertionAxiom) - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSection
 
visit(OWLObjectPropertyAssertionAxiom) - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSection
 
visit(OWLObjectPropertyChainSubPropertyAxiom) - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSection
 
visit(OWLObjectPropertyDomainAxiom) - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSection
 
visit(OWLObjectPropertyRangeAxiom) - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSection
 
visit(OWLObjectSubPropertyAxiom) - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSection
 
visit(OWLReflexiveObjectPropertyAxiom) - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSection
 
visit(OWLSameIndividualsAxiom) - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSection
 
visit(OWLSubClassAxiom) - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSection
 
visit(OWLSymmetricObjectPropertyAxiom) - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSection
 
visit(OWLTransitiveObjectPropertyAxiom) - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSection
 
visit(SWRLRule) - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSection
 
visit(OWLOntologyAnnotationAxiom) - Method in class org.protege.editor.owl.ui.frame.AbstractOWLFrameSection
 
visit(OWLSubClassAxiom) - Method in class org.protege.editor.owl.ui.frame.InheritedAnonymousClassesFrameSection
 
visit(OWLEquivalentClassesAxiom) - Method in class org.protege.editor.owl.ui.frame.InheritedAnonymousClassesFrameSection
 
visit(OWLEntityAnnotationAxiom) - Method in class org.protege.editor.owl.ui.frame.OWLAnnotationFrameSection
 
visit(OWLAxiomAnnotationAxiom) - Method in class org.protege.editor.owl.ui.frame.OWLAxiomAnnotationsFrameSection
 
visit(OWLClassAssertionAxiom) - Method in class org.protege.editor.owl.ui.frame.OWLClassAssertionAxiomIndividualSection
 
visit(OWLClassAssertionAxiom) - Method in class org.protege.editor.owl.ui.frame.OWLClassAssertionAxiomTypeFrameSection
 
visit(OWLDataPropertyAssertionAxiom) - Method in class org.protege.editor.owl.ui.frame.OWLDataPropertyAssertionAxiomFrameSection
 
visit(OWLDataPropertyDomainAxiom) - Method in class org.protege.editor.owl.ui.frame.OWLDataPropertyDomainFrameSection
 
visit(OWLDataPropertyRangeAxiom) - Method in class org.protege.editor.owl.ui.frame.OWLDataPropertyRangeFrameSection
 
visit(OWLDifferentIndividualsAxiom) - Method in class org.protege.editor.owl.ui.frame.OWLDifferentIndividualsAxiomFrameSection
 
visit(OWLDisjointClassesAxiom) - Method in class org.protege.editor.owl.ui.frame.OWLDisjointClassesAxiomFrameSection
 
visit(OWLDisjointDataPropertiesAxiom) - Method in class org.protege.editor.owl.ui.frame.OWLDisjointDataPropertiesFrameSection
 
visit(OWLDisjointObjectPropertiesAxiom) - Method in class org.protege.editor.owl.ui.frame.OWLDisjointObjectPropertiesFrameSection
 
visit(OWLClass) - Method in class org.protege.editor.owl.ui.frame.OWLEntityFrame
 
visit(OWLDataProperty) - Method in class org.protege.editor.owl.ui.frame.OWLEntityFrame
 
visit(OWLDataType) - Method in class org.protege.editor.owl.ui.frame.OWLEntityFrame
 
visit(OWLIndividual) - Method in class org.protege.editor.owl.ui.frame.OWLEntityFrame
 
visit(OWLObjectProperty) - Method in class org.protege.editor.owl.ui.frame.OWLEntityFrame
 
visit(OWLEquivalentClassesAxiom) - Method in class org.protege.editor.owl.ui.frame.OWLEquivalentClassesAxiomFrameSection
 
visit(OWLEquivalentDataPropertiesAxiom) - Method in class org.protege.editor.owl.ui.frame.OWLEquivalentDataPropertiesFrameSection
 
visit(OWLEquivalentObjectPropertiesAxiom) - Method in class org.protege.editor.owl.ui.frame.OWLEquivalentObjectPropertiesAxiomFrameSection
 
visit(OWLEquivalentDataPropertiesAxiom) - Method in class org.protege.editor.owl.ui.frame.OWLEquivalentObjectPropertiesAxiomFrameSection
 
visit(OWLSubClassAxiom) - Method in class org.protege.editor.owl.ui.frame.OWLGeneralClassAxiomsFrameSection
 
visit(OWLDisjointClassesAxiom) - Method in class org.protege.editor.owl.ui.frame.OWLGeneralClassAxiomsFrameSection
 
visit(OWLEquivalentClassesAxiom) - Method in class org.protege.editor.owl.ui.frame.OWLGeneralClassAxiomsFrameSection
 
visit(OWLImportsDeclaration) - Method in class org.protege.editor.owl.ui.frame.OWLImportsDeclarationFrameSection
 
visit(OWLImportsDeclaration) - Method in class org.protege.editor.owl.ui.frame.OWLIndirectImportsFrameSection
 
visit(OWLInverseObjectPropertiesAxiom) - Method in class org.protege.editor.owl.ui.frame.OWLInverseObjectPropertiesAxiomFrameSection
 
visit(OWLNegativeDataPropertyAssertionAxiom) - Method in class org.protege.editor.owl.ui.frame.OWLNegativeDataPropertyAssertionFrameSection
 
visit(OWLNegativeObjectPropertyAssertionAxiom) - Method in class org.protege.editor.owl.ui.frame.OWLNegativeObjectPropertyAssertionFrameSection
 
visit(OWLNegativeDataPropertyAssertionAxiom) - Method in class org.protege.editor.owl.ui.frame.OWLNegativeObjectPropertyAssertionFrameSection
 
visit(OWLObjectPropertyAssertionAxiom) - Method in class org.protege.editor.owl.ui.frame.OWLObjectPropertyAssertionAxiomFrameSection
 
visit(OWLObjectPropertyDomainAxiom) - Method in class org.protege.editor.owl.ui.frame.OWLObjectPropertyDomainFrameSection
 
visit(OWLObjectPropertyRangeAxiom) - Method in class org.protege.editor.owl.ui.frame.OWLObjectPropertyRangeFrameSection
 
visit(OWLOntologyAnnotationAxiom) - Method in class org.protege.editor.owl.ui.frame.OWLOntologyAnnotationAxiomFrameSection
 
visit(OWLObjectPropertyChainSubPropertyAxiom) - Method in class org.protege.editor.owl.ui.frame.OWLPropertyChainAxiomFrameSection
 
visit(OWLSameIndividualsAxiom) - Method in class org.protege.editor.owl.ui.frame.OWLSameIndividualsAxiomFrameSection
 
visit(OWLSubClassAxiom) - Method in class org.protege.editor.owl.ui.frame.OWLSubClassAxiomFrameSection
 
visit(OWLDataSubPropertyAxiom) - Method in class org.protege.editor.owl.ui.frame.OWLSubDataPropertyAxiomSuperPropertyFrameSection
 
visit(OWLObjectSubPropertyAxiom) - Method in class org.protege.editor.owl.ui.frame.OWLSubObjectPropertyAxiomSuperPropertyFrameSection
 
visit(SWRLRule) - Method in class org.protege.editor.owl.ui.frame.SWRLRulesFrameSection
 
visit(OWLAntiSymmetricObjectPropertyAxiom) - Method in class org.protege.editor.owl.ui.metrics.Metric
 
visit(OWLAxiomAnnotationAxiom) - Method in class org.protege.editor.owl.ui.metrics.Metric
 
visit(OWLClassAssertionAxiom) - Method in class org.protege.editor.owl.ui.metrics.Metric
 
visit(OWLDataPropertyAssertionAxiom) - Method in class org.protege.editor.owl.ui.metrics.Metric
 
visit(OWLDataPropertyDomainAxiom) - Method in class org.protege.editor.owl.ui.metrics.Metric
 
visit(OWLDataPropertyRangeAxiom) - Method in class org.protege.editor.owl.ui.metrics.Metric
 
visit(OWLDataSubPropertyAxiom) - Method in class org.protege.editor.owl.ui.metrics.Metric
 
visit(OWLDeclarationAxiom) - Method in class org.protege.editor.owl.ui.metrics.Metric
 
visit(OWLDifferentIndividualsAxiom) - Method in class org.protege.editor.owl.ui.metrics.Metric
 
visit(OWLDisjointClassesAxiom) - Method in class org.protege.editor.owl.ui.metrics.Metric
 
visit(OWLDisjointDataPropertiesAxiom) - Method in class org.protege.editor.owl.ui.metrics.Metric
 
visit(OWLDisjointObjectPropertiesAxiom) - Method in class org.protege.editor.owl.ui.metrics.Metric
 
visit(OWLDisjointUnionAxiom) - Method in class org.protege.editor.owl.ui.metrics.Metric
 
visit(OWLEntityAnnotationAxiom) - Method in class org.protege.editor.owl.ui.metrics.Metric
 
visit(OWLEquivalentClassesAxiom) - Method in class org.protege.editor.owl.ui.metrics.Metric
 
visit(OWLEquivalentDataPropertiesAxiom) - Method in class org.protege.editor.owl.ui.metrics.Metric
 
visit(OWLEquivalentObjectPropertiesAxiom) - Method in class org.protege.editor.owl.ui.metrics.Metric
 
visit(OWLFunctionalDataPropertyAxiom) - Method in class org.protege.editor.owl.ui.metrics.Metric
 
visit(OWLFunctionalObjectPropertyAxiom) - Method in class org.protege.editor.owl.ui.metrics.Metric
 
visit(OWLImportsDeclaration) - Method in class org.protege.editor.owl.ui.metrics.Metric
 
visit(OWLInverseFunctionalObjectPropertyAxiom) - Method in class org.protege.editor.owl.ui.metrics.Metric
 
visit(OWLInverseObjectPropertiesAxiom) - Method in class org.protege.editor.owl.ui.metrics.Metric
 
visit(OWLIrreflexiveObjectPropertyAxiom) - Method in class org.protege.editor.owl.ui.metrics.Metric
 
visit(OWLNegativeDataPropertyAssertionAxiom) - Method in class org.protege.editor.owl.ui.metrics.Metric
 
visit(OWLNegativeObjectPropertyAssertionAxiom) - Method in class org.protege.editor.owl.ui.metrics.Metric
 
visit(OWLObjectPropertyAssertionAxiom) - Method in class org.protege.editor.owl.ui.metrics.Metric
 
visit(OWLObjectPropertyChainSubPropertyAxiom) - Method in class org.protege.editor.owl.ui.metrics.Metric
 
visit(OWLObjectPropertyDomainAxiom) - Method in class org.protege.editor.owl.ui.metrics.Metric
 
visit(OWLObjectPropertyRangeAxiom) - Method in class org.protege.editor.owl.ui.metrics.Metric
 
visit(OWLObjectSubPropertyAxiom) - Method in class org.protege.editor.owl.ui.metrics.Metric
 
visit(OWLOntologyAnnotationAxiom) - Method in class org.protege.editor.owl.ui.metrics.Metric
 
visit(OWLReflexiveObjectPropertyAxiom) - Method in class org.protege.editor.owl.ui.metrics.Metric
 
visit(OWLSameIndividualsAxiom) - Method in class org.protege.editor.owl.ui.metrics.Metric
 
visit(OWLSubClassAxiom) - Method in class org.protege.editor.owl.ui.metrics.Metric
 
visit(OWLSymmetricObjectPropertyAxiom) - Method in class org.protege.editor.owl.ui.metrics.Metric
 
visit(OWLTransitiveObjectPropertyAxiom) - Method in class org.protege.editor.owl.ui.metrics.Metric
 
visit(SWRLRule) - Method in class org.protege.editor.owl.ui.metrics.Metric
 
visit(OWLObjectIntersectionOf) - Method in class org.protege.editor.owl.ui.renderer.OWLIconProviderImpl
 
visit(OWLDataType) - Method in class org.protege.editor.owl.ui.renderer.OWLIconProviderImpl
 
visit(OWLDataOneOf) - Method in class org.protege.editor.owl.ui.renderer.OWLIconProviderImpl
 
visit(OWLDataAllRestriction) - Method in class org.protege.editor.owl.ui.renderer.OWLIconProviderImpl
 
visit(OWLDataProperty) - Method in class org.protege.editor.owl.ui.renderer.OWLIconProviderImpl
 
visit(OWLDataSomeRestriction) - Method in class org.protege.editor.owl.ui.renderer.OWLIconProviderImpl
 
visit(OWLDataValueRestriction) - Method in class org.protege.editor.owl.ui.renderer.OWLIconProviderImpl
 
visit(OWLDifferentIndividualsAxiom) - Method in class org.protege.editor.owl.ui.renderer.OWLIconProviderImpl
 
visit(OWLDisjointDataPropertiesAxiom) - Method in class org.protege.editor.owl.ui.renderer.OWLIconProviderImpl
 
visit(OWLFunctionalObjectPropertyAxiom) - Method in class org.protege.editor.owl.ui.renderer.OWLIconProviderImpl
 
visit(OWLDisjointObjectPropertiesAxiom) - Method in class org.protege.editor.owl.ui.renderer.OWLIconProviderImpl
 
visit(OWLInverseObjectPropertiesAxiom) - Method in class org.protege.editor.owl.ui.renderer.OWLIconProviderImpl
 
visit(OWLInverseFunctionalObjectPropertyAxiom) - Method in class org.protege.editor.owl.ui.renderer.OWLIconProviderImpl
 
visit(OWLObjectPropertyDomainAxiom) - Method in class org.protege.editor.owl.ui.renderer.OWLIconProviderImpl
 
visit(OWLEquivalentObjectPropertiesAxiom) - Method in class org.protege.editor.owl.ui.renderer.OWLIconProviderImpl
 
visit(OWLObjectPropertyRangeAxiom) - Method in class org.protege.editor.owl.ui.renderer.OWLIconProviderImpl
 
visit(OWLObjectSubPropertyAxiom) - Method in class org.protege.editor.owl.ui.renderer.OWLIconProviderImpl
 
visit(OWLIndividual) - Method in class org.protege.editor.owl.ui.renderer.OWLIconProviderImpl
 
visit(OWLAnonymousIndividual) - Method in class org.protege.editor.owl.ui.renderer.OWLIconProviderImpl
 
visit(OWLObjectAllRestriction) - Method in class org.protege.editor.owl.ui.renderer.OWLIconProviderImpl
 
visit(OWLObjectMinCardinalityRestriction) - Method in class org.protege.editor.owl.ui.renderer.OWLIconProviderImpl
 
visit(OWLObjectExactCardinalityRestriction) - Method in class org.protege.editor.owl.ui.renderer.OWLIconProviderImpl
 
visit(OWLObjectMaxCardinalityRestriction) - Method in class org.protege.editor.owl.ui.renderer.OWLIconProviderImpl
 
visit(OWLObjectSelfRestriction) - Method in class org.protege.editor.owl.ui.renderer.OWLIconProviderImpl
 
visit(OWLDataMinCardinalityRestriction) - Method in class org.protege.editor.owl.ui.renderer.OWLIconProviderImpl
 
visit(OWLDataExactCardinalityRestriction) - Method in class org.protege.editor.owl.ui.renderer.OWLIconProviderImpl
 
visit(OWLDataMaxCardinalityRestriction) - Method in class org.protege.editor.owl.ui.renderer.OWLIconProviderImpl
 
visit(OWLObjectProperty) - Method in class org.protege.editor.owl.ui.renderer.OWLIconProviderImpl
 
visit(OWLObjectSomeRestriction) - Method in class org.protege.editor.owl.ui.renderer.OWLIconProviderImpl
 
visit(OWLObjectValueRestriction) - Method in class org.protege.editor.owl.ui.renderer.OWLIconProviderImpl
 
visit(OWLObjectComplementOf) - Method in class org.protege.editor.owl.ui.renderer.OWLIconProviderImpl
 
visit(OWLOntology) - Method in class org.protege.editor.owl.ui.renderer.OWLIconProviderImpl
 
visit(OWLObjectUnionOf) - Method in class org.protege.editor.owl.ui.renderer.OWLIconProviderImpl
 
visit(OWLImportsDeclaration) - Method in class org.protege.editor.owl.ui.renderer.OWLIconProviderImpl
 
visit(OWLSubClassAxiom) - Method in class org.protege.editor.owl.ui.renderer.OWLIconProviderImpl
 
visit(OWLAntiSymmetricObjectPropertyAxiom) - Method in class org.protege.editor.owl.ui.renderer.OWLIconProviderImpl
 
visit(OWLReflexiveObjectPropertyAxiom) - Method in class org.protege.editor.owl.ui.renderer.OWLIconProviderImpl
 
visit(OWLDisjointClassesAxiom) - Method in class org.protege.editor.owl.ui.renderer.OWLIconProviderImpl
 
visit(OWLDataPropertyDomainAxiom) - Method in class org.protege.editor.owl.ui.renderer.OWLIconProviderImpl
 
visit(OWLDisjointUnionAxiom) - Method in class org.protege.editor.owl.ui.renderer.OWLIconProviderImpl
 
visit(OWLSymmetricObjectPropertyAxiom) - Method in class org.protege.editor.owl.ui.renderer.OWLIconProviderImpl
 
visit(OWLDataPropertyRangeAxiom) - Method in class org.protege.editor.owl.ui.renderer.OWLIconProviderImpl
 
visit(OWLFunctionalDataPropertyAxiom) - Method in class org.protege.editor.owl.ui.renderer.OWLIconProviderImpl
 
visit(OWLEquivalentDataPropertiesAxiom) - Method in class org.protege.editor.owl.ui.renderer.OWLIconProviderImpl
 
visit(OWLEquivalentClassesAxiom) - Method in class org.protege.editor.owl.ui.renderer.OWLIconProviderImpl
 
visit(OWLTransitiveObjectPropertyAxiom) - Method in class org.protege.editor.owl.ui.renderer.OWLIconProviderImpl
 
visit(OWLIrreflexiveObjectPropertyAxiom) - Method in class org.protege.editor.owl.ui.renderer.OWLIconProviderImpl
 
visit(OWLDataSubPropertyAxiom) - Method in class org.protege.editor.owl.ui.renderer.OWLIconProviderImpl
 
visit(OWLSameIndividualsAxiom) - Method in class org.protege.editor.owl.ui.renderer.OWLIconProviderImpl
 
visit(OWLClassAssertionAxiom) - Method in class org.protege.editor.owl.ui.renderer.OWLIconProviderImpl
 
visit(OWLObjectPropertyChainSubPropertyAxiom) - Method in class org.protege.editor.owl.ui.renderer.OWLIconProviderImpl
 
visit(OWLClass) - Method in class org.protege.editor.owl.ui.renderer.OWLIconProviderImpl
 
visit(OWLObjectOneOf) - Method in class org.protege.editor.owl.ui.renderer.OWLIconProviderImpl
 
visit(OWLObjectIntersectionOf) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererDLSyntax
 
visit(OWLTypedConstant) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererDLSyntax
 
visit(OWLUntypedConstant) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererDLSyntax
 
visit(OWLDataType) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererDLSyntax
 
visit(OWLDataOneOf) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererDLSyntax
 
visit(OWLDataAllRestriction) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererDLSyntax
 
visit(OWLDataProperty) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererDLSyntax
 
visit(OWLDataSomeRestriction) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererDLSyntax
 
visit(OWLDataValueRestriction) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererDLSyntax
 
visit(OWLIndividual) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererDLSyntax
 
visit(OWLObjectAllRestriction) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererDLSyntax
 
visit(OWLObjectMinCardinalityRestriction) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererDLSyntax
 
visit(OWLObjectExactCardinalityRestriction) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererDLSyntax
 
visit(OWLObjectMaxCardinalityRestriction) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererDLSyntax
 
visit(OWLDataMinCardinalityRestriction) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererDLSyntax
 
visit(OWLDataExactCardinalityRestriction) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererDLSyntax
 
visit(OWLDataMaxCardinalityRestriction) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererDLSyntax
 
visit(OWLObjectProperty) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererDLSyntax
 
visit(OWLObjectSomeRestriction) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererDLSyntax
 
visit(OWLObjectValueRestriction) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererDLSyntax
 
visit(OWLObjectComplementOf) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererDLSyntax
 
visit(OWLObjectUnionOf) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererDLSyntax
 
visit(OWLClass) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererDLSyntax
 
visit(OWLObjectOneOf) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererDLSyntax
 
visit(OWLDisjointClassesAxiom) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererDLSyntax
 
visit(OWLEquivalentClassesAxiom) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererDLSyntax
 
visit(OWLSubClassAxiom) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererDLSyntax
 
visit(OWLOntology) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererDLSyntax
 
visit(OWLObjectIntersectionOf) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
visit(OWLTypedConstant) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
visit(OWLUntypedConstant) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
visit(OWLDataType) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
visit(OWLDataOneOf) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
visit(OWLDataRangeRestriction) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
visit(OWLDataComplementOf) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
visit(OWLDataRangeFacetRestriction) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
visit(OWLObjectSelfRestriction) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
visit(OWLDataAllRestriction) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
visit(OWLDataProperty) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
visit(OWLDataSomeRestriction) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
visit(OWLDataValueRestriction) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
visit(OWLIndividual) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
visit(OWLObjectAllRestriction) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
visit(OWLObjectMinCardinalityRestriction) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
visit(OWLObjectExactCardinalityRestriction) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
visit(OWLObjectMaxCardinalityRestriction) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
visit(OWLDataMinCardinalityRestriction) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
visit(OWLDataExactCardinalityRestriction) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
visit(OWLDataMaxCardinalityRestriction) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
visit(OWLObjectProperty) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
visit(OWLObjectSomeRestriction) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
visit(OWLObjectValueRestriction) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
visit(OWLObjectComplementOf) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
visit(OWLObjectUnionOf) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
visit(OWLClass) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
visit(OWLObjectPropertyInverse) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
visit(OWLObjectOneOf) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
visit(OWLDisjointClassesAxiom) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
visit(OWLEquivalentClassesAxiom) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
visit(OWLSubClassAxiom) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
visit(OWLFunctionalObjectPropertyAxiom) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
visit(OWLInverseFunctionalObjectPropertyAxiom) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
visit(OWLIrreflexiveObjectPropertyAxiom) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
visit(OWLDataSubPropertyAxiom) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
visit(OWLReflexiveObjectPropertyAxiom) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
visit(OWLSymmetricObjectPropertyAxiom) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
visit(OWLTransitiveObjectPropertyAxiom) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
visit(OWLObjectPropertyDomainAxiom) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
visit(OWLEquivalentObjectPropertiesAxiom) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
visit(OWLObjectPropertyRangeAxiom) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
visit(OWLClassAssertionAxiom) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
visit(OWLFunctionalDataPropertyAxiom) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
visit(OWLEquivalentDataPropertiesAxiom) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
visit(OWLSameIndividualsAxiom) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
visit(OWLDifferentIndividualsAxiom) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
visit(OWLDisjointDataPropertiesAxiom) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
visit(OWLDisjointObjectPropertiesAxiom) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
visit(OWLObjectPropertyAssertionAxiom) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
visit(OWLDataPropertyAssertionAxiom) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
visit(OWLNegativeDataPropertyAssertionAxiom) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
visit(OWLNegativeObjectPropertyAssertionAxiom) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
visit(OWLInverseObjectPropertiesAxiom) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
visit(OWLAntiSymmetricObjectPropertyAxiom) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
visit(OWLDataPropertyDomainAxiom) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
visit(OWLDataPropertyRangeAxiom) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
visit(OWLObjectSubPropertyAxiom) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
visit(OWLDisjointUnionAxiom) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
visit(OWLDeclarationAxiom) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
visit(OWLImportsDeclaration) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
visit(OWLAxiomAnnotationAxiom) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
visit(OWLOntology) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
visit(OWLObjectPropertyChainSubPropertyAxiom) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
visit(OWLConstantAnnotation) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
visit(SWRLRule) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
visit(OWLEntityAnnotationAxiom) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
visit(OWLOntologyAnnotationAxiom) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
visit(OWLObjectAnnotation) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
visit(SWRLClassAtom) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
visit(SWRLDataRangeAtom) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
visit(SWRLObjectPropertyAtom) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
visit(SWRLDataValuedPropertyAtom) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
visit(SWRLBuiltInAtom) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
visit(SWRLAtomDVariable) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
visit(SWRLAtomIVariable) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
visit(SWRLAtomIndividualObject) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
visit(SWRLAtomConstantObject) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
visit(SWRLDifferentFromAtom) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
visit(SWRLSameAsAtom) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
visit(OWLAntiSymmetricObjectPropertyAxiom) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.OWLVizAxiomGraphModel
 
visit(OWLAxiomAnnotationAxiom) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.OWLVizAxiomGraphModel
 
visit(OWLClassAssertionAxiom) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.OWLVizAxiomGraphModel
 
visit(OWLDataPropertyAssertionAxiom) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.OWLVizAxiomGraphModel
 
visit(OWLDataPropertyDomainAxiom) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.OWLVizAxiomGraphModel
 
visit(OWLDataPropertyRangeAxiom) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.OWLVizAxiomGraphModel
 
visit(OWLDataSubPropertyAxiom) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.OWLVizAxiomGraphModel
 
visit(OWLDeclarationAxiom) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.OWLVizAxiomGraphModel
 
visit(OWLDifferentIndividualsAxiom) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.OWLVizAxiomGraphModel
 
visit(OWLDisjointClassesAxiom) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.OWLVizAxiomGraphModel
 
visit(OWLDisjointDataPropertiesAxiom) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.OWLVizAxiomGraphModel
 
visit(OWLDisjointObjectPropertiesAxiom) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.OWLVizAxiomGraphModel
 
visit(OWLDisjointUnionAxiom) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.OWLVizAxiomGraphModel
 
visit(OWLEntityAnnotationAxiom) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.OWLVizAxiomGraphModel
 
visit(OWLEquivalentClassesAxiom) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.OWLVizAxiomGraphModel
 
visit(OWLEquivalentDataPropertiesAxiom) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.OWLVizAxiomGraphModel
 
visit(OWLEquivalentObjectPropertiesAxiom) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.OWLVizAxiomGraphModel
 
visit(OWLFunctionalDataPropertyAxiom) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.OWLVizAxiomGraphModel
 
visit(OWLFunctionalObjectPropertyAxiom) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.OWLVizAxiomGraphModel
 
visit(OWLImportsDeclaration) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.OWLVizAxiomGraphModel
 
visit(OWLInverseFunctionalObjectPropertyAxiom) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.OWLVizAxiomGraphModel
 
visit(OWLInverseObjectPropertiesAxiom) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.OWLVizAxiomGraphModel
 
visit(OWLIrreflexiveObjectPropertyAxiom) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.OWLVizAxiomGraphModel
 
visit(OWLNegativeDataPropertyAssertionAxiom) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.OWLVizAxiomGraphModel
 
visit(OWLNegativeObjectPropertyAssertionAxiom) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.OWLVizAxiomGraphModel
 
visit(OWLObjectPropertyAssertionAxiom) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.OWLVizAxiomGraphModel
 
visit(OWLObjectPropertyChainSubPropertyAxiom) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.OWLVizAxiomGraphModel
 
visit(OWLObjectPropertyDomainAxiom) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.OWLVizAxiomGraphModel
 
visit(OWLObjectPropertyRangeAxiom) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.OWLVizAxiomGraphModel
 
visit(OWLObjectSubPropertyAxiom) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.OWLVizAxiomGraphModel
 
visit(OWLOntologyAnnotationAxiom) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.OWLVizAxiomGraphModel
 
visit(OWLReflexiveObjectPropertyAxiom) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.OWLVizAxiomGraphModel
 
visit(OWLSameIndividualsAxiom) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.OWLVizAxiomGraphModel
 
visit(OWLSubClassAxiom) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.OWLVizAxiomGraphModel
 
visit(OWLSymmetricObjectPropertyAxiom) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.OWLVizAxiomGraphModel
 
visit(OWLTransitiveObjectPropertyAxiom) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.OWLVizAxiomGraphModel
 
visit(SWRLRule) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.OWLVizAxiomGraphModel
 
visit(OWLClass) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.OWLVizAxiomGraphModel
 
visit(OWLDataAllRestriction) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.OWLVizAxiomGraphModel
 
visit(OWLDataExactCardinalityRestriction) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.OWLVizAxiomGraphModel
 
visit(OWLDataMaxCardinalityRestriction) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.OWLVizAxiomGraphModel
 
visit(OWLDataMinCardinalityRestriction) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.OWLVizAxiomGraphModel
 
visit(OWLDataSomeRestriction) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.OWLVizAxiomGraphModel
 
visit(OWLDataValueRestriction) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.OWLVizAxiomGraphModel
 
visit(OWLObjectAllRestriction) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.OWLVizAxiomGraphModel
 
visit(OWLObjectComplementOf) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.OWLVizAxiomGraphModel
 
visit(OWLObjectExactCardinalityRestriction) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.OWLVizAxiomGraphModel
 
visit(OWLObjectIntersectionOf) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.OWLVizAxiomGraphModel
 
visit(OWLObjectMaxCardinalityRestriction) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.OWLVizAxiomGraphModel
 
visit(OWLObjectMinCardinalityRestriction) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.OWLVizAxiomGraphModel
 
visit(OWLObjectOneOf) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.OWLVizAxiomGraphModel
 
visit(OWLObjectSelfRestriction) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.OWLVizAxiomGraphModel
 
visit(OWLObjectSomeRestriction) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.OWLVizAxiomGraphModel
 
visit(OWLObjectUnionOf) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.OWLVizAxiomGraphModel
 
visit(OWLObjectValueRestriction) - Method in class uk.ac.man.cs.mig.coode.owlviz.model.OWLVizAxiomGraphModel
 
VISUALISED_OBJECT_MANAGER_PROPERTY - Static variable in interface uk.ac.man.cs.mig.util.graph.controller.Controller
 
VisualisedObjectManager - Interface in uk.ac.man.cs.mig.util.graph.controller
User: matthewhorridge The Univeristy Of Manchester Medical Informatics Group Date: Dec 27, 2003 matthew.horridge@cs.man.ac.uk www.cs.man.ac.uk/~horridgm The visualised object manager is associated with a graph model, and is responsible for keeping track of displayed/visualised objects from the graph model, and whether or not their parents/children are shown.
VisualisedObjectManagerEvent - Class in uk.ac.man.cs.mig.util.graph.event
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Jan 12, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

VisualisedObjectManagerEvent(Object, ArrayList) - Constructor for class uk.ac.man.cs.mig.util.graph.event.VisualisedObjectManagerEvent
Constructs a VisualisedObjectManagerEvent that holds information relating to an event that was generated by a VisualisedObjectManager.
VisualisedObjectManagerListener - Interface in uk.ac.man.cs.mig.util.graph.event
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Jan 12, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

An interface for listeners intereted in knowing about events generated by a VisualisedObjectManager.
VisualisedObjectWrapper - Class in uk.ac.man.cs.mig.util.graph.controller.impl
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Jan 12, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

VisualisedObjectWrapper(Object) - Constructor for class uk.ac.man.cs.mig.util.graph.controller.impl.VisualisedObjectWrapper
 

W

WebConnectionURIMapper - Class in org.protege.editor.owl.model.io
Author: drummond
http://www.cs.man.ac.uk/~drummond/

The University Of Manchester
Bio Health Informatics Group
Date: Sep 1, 2008

A custom URIMapper.

WebConnectionURIMapper() - Constructor for class org.protege.editor.owl.model.io.WebConnectionURIMapper
 
WINDOW_MENU_NAME - Static variable in class org.protege.editor.core.ui.workspace.Workspace
 
windowClosing(WindowEvent) - Method in class org.protege.editor.core.ui.wizard.Wizard
If the user presses the dispose box on the dialog's window, treat it as a cancel.
Wizard - Class in org.protege.editor.core.ui.wizard
This class implements a basic wizard dialog, where the programmer can insert one or more Components to act as panels.
Wizard() - Constructor for class org.protege.editor.core.ui.wizard.Wizard
Default constructor.
Wizard(Dialog) - Constructor for class org.protege.editor.core.ui.wizard.Wizard
This method accepts a java.awt.Dialog object as the javax.swing.JDialog's parent.
Wizard(Frame) - Constructor for class org.protege.editor.core.ui.wizard.Wizard
This method accepts a java.awt.Frame object as the javax.swing.JDialog's parent.
Wizard - Class in uk.ac.man.cs.mig.util.wizard
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Jan 6, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

A Wizard consists of a dialog containing pages, that can be sequentially accessed using previous and next buttons.
Wizard(String) - Constructor for class uk.ac.man.cs.mig.util.wizard.Wizard
Constructs a Wizard with no owner frame, using the specified title and the specified pages.
Wizard(Frame, String) - Constructor for class uk.ac.man.cs.mig.util.wizard.Wizard
Constructs a Wizard with the specified owner frame, title and pages.
Wizard(Frame, String, String, String, String, String) - Constructor for class uk.ac.man.cs.mig.util.wizard.Wizard
Constructs a Wizard with the specified attributes.
WizardController - Class in org.protege.editor.core.ui.wizard
This class is responsible for reacting to events generated by pushing any of the three buttons, 'Next', 'Previous', and 'Cancel.' Based on what button is pressed, the controller will update the model to show a new panel and reset the state of the buttons as necessary.
WizardController(Wizard) - Constructor for class org.protege.editor.core.ui.wizard.WizardController
This constructor accepts a reference to the Wizard component that created it, which it uses to update the button components and access the WizardModel.
WizardEvent - Class in uk.ac.man.cs.mig.util.wizard
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Jan 6, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

WizardEvent(Wizard) - Constructor for class uk.ac.man.cs.mig.util.wizard.WizardEvent
Constructs a new Wizard event, that is associated with the specified Wizard.
WizardEventListener - Interface in uk.ac.man.cs.mig.util.wizard
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Jan 6, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

WizardModel - Class in org.protege.editor.core.ui.wizard
The model for the Wizard component, which tracks the text, icons, and enabled state of each of the buttons, as well as the current panel that is displayed.
WizardModel() - Constructor for class org.protege.editor.core.ui.wizard.WizardModel
Default constructor.
WizardPage - Class in uk.ac.man.cs.mig.util.wizard
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Jan 6, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

Represents a page held by a Wizard
WizardPage(String) - Constructor for class uk.ac.man.cs.mig.util.wizard.WizardPage
Constructs a WizardPage using the specified name.
WizardPanel - Class in org.protege.editor.core.ui.wizard
A base descriptor class used to reference a Component panel for the Wizard, as well as provide general rules as to how the panel should behave.
WizardPanel(Object) - Constructor for class org.protege.editor.core.ui.wizard.WizardPanel
 
WizardPanelNotFoundException - Exception in org.protege.editor.core.ui.wizard
 
WizardPanelNotFoundException(Object) - Constructor for exception org.protege.editor.core.ui.wizard.WizardPanelNotFoundException
 
wizardSet(Wizard) - Method in class uk.ac.man.cs.mig.util.wizard.WizardPage
Called when the page has been added to a Wizard, and the Wizard has set itself as the 'owner' of the page.
Workspace - Class in org.protege.editor.core.ui.workspace
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Mar 15, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

A Workspace is a UI component that presents a view on an EditorKit.

Workspace() - Constructor for class org.protege.editor.core.ui.workspace.Workspace
 
WORKSPACE_TAB_ID_PARAM - Static variable in class org.protege.editor.core.ui.view.ViewComponentPluginJPFImpl
 
WorkspaceFrame - Class in org.protege.editor.core.ui.workspace
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Mar 15, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

The WorkspaceFrame is a holder for a Workspace.

WorkspaceFrame(Workspace) - Constructor for class org.protege.editor.core.ui.workspace.WorkspaceFrame
 
WorkspaceManager - Class in org.protege.editor.core.ui.workspace
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Mar 27, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

WorkspaceManager() - Constructor for class org.protege.editor.core.ui.workspace.WorkspaceManager
 
WorkspaceTab - Class in org.protege.editor.core.ui.workspace
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Mar 18, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

Represents a tab in a TabbedWorkspace.

WorkspaceTab() - Constructor for class org.protege.editor.core.ui.workspace.WorkspaceTab
 
WorkspaceTabPlugin - Interface in org.protege.editor.core.ui.workspace
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Mar 18, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

A ProtegePlugin that creates WorkspaceTabs.

WorkspaceTabPluginJPFImpl - Class in org.protege.editor.core.ui.workspace
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Mar 28, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

An implementation of the WorkspaceTabPlugin that uses the Java Plugin Framework to obtain the details of the plugins

WorkspaceTabPluginJPFImpl(TabbedWorkspace, IExtension) - Constructor for class org.protege.editor.core.ui.workspace.WorkspaceTabPluginJPFImpl
 
WorkspaceTabPluginLoader - Class in org.protege.editor.core.ui.workspace
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Mar 18, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

A utility class that loads WorkspaceTabPlugins.

WorkspaceTabPluginLoader(TabbedWorkspace) - Constructor for class org.protege.editor.core.ui.workspace.WorkspaceTabPluginLoader
Creates a WorkspaceTabPluginLoader that will load WorkspaceTabPlugins that are applicable to the specified Workspace.
WorkspaceViewManager - Class in org.protege.editor.core.ui.workspace
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Mar 29, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

The view manager provides a place where plugins can ask for certain views to be shown.

WorkspaceViewManager() - Constructor for class org.protege.editor.core.ui.workspace.WorkspaceViewManager
 
WorkspaceViewsTab - Class in org.protege.editor.core.ui.workspace
Author: Matthew Horridge
The University Of Manchester
Medical Informatics Group
Date: Apr 6, 2006

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

Represents a workspace tab that hosts a views panel.

WorkspaceViewsTab() - Constructor for class org.protege.editor.core.ui.workspace.WorkspaceViewsTab
 
write(String) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererDLSyntax
 
write(String) - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
writeAndKeyword() - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererDLSyntax
 
writeAndKeyword() - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
writeHeader(Graph) - Method in class uk.ac.man.cs.mig.util.graph.outputrenderer.impl.DotOutputGraphRenderer
 
writeNotKeyword() - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererDLSyntax
 
writeNotKeyword() - Method in class org.protege.editor.owl.ui.renderer.OWLObjectRendererImpl
 
writer - Variable in class uk.ac.man.cs.mig.util.graph.outputrenderer.impl.DotOutputGraphRenderer
 

X

XMLWriterPreferencesPanel - Class in org.protege.editor.owl.ui.preferences
Deprecated. use SavePreferencesPanel
XMLWriterPreferencesPanel() - Constructor for class org.protege.editor.owl.ui.preferences.XMLWriterPreferencesPanel
Deprecated.  
XMLWriterPrefs - Class in org.protege.editor.owl.model
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group
Date: 27-Nov-2007

XMLWriterPrefs() - Constructor for class org.protege.editor.owl.model.XMLWriterPrefs
 

Z

ZOOM_IN_ICON - Static variable in class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizIcons
 
ZOOM_OUT_ICON - Static variable in class uk.ac.man.cs.mig.coode.owlviz.ui.OWLVizIcons
 
Zoomable - Interface in uk.ac.man.cs.mig.util.graph.ui
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Jan 30, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

ZoomInCommand - Class in uk.ac.man.cs.mig.coode.owlviz.command
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Feb 19, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

ZoomInCommand(OWLVizViewI) - Constructor for class uk.ac.man.cs.mig.coode.owlviz.command.ZoomInCommand
 
ZoomOutCommand - Class in uk.ac.man.cs.mig.coode.owlviz.command
User: matthewhorridge
The Univeristy Of Manchester
Medical Informatics Group
Date: Feb 19, 2004

matthew.horridge@cs.man.ac.uk
www.cs.man.ac.uk/~horridgm

ZoomOutCommand(OWLVizViewI) - Constructor for class uk.ac.man.cs.mig.coode.owlviz.command.ZoomOutCommand
 
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