Protégé-OWL 3.4.8

Deprecated API


Contents
Deprecated Interfaces
edu.stanford.smi.protegex.owl.inference.protegeowl.ProtegeOWLReasoner
          - Use ProtegeReasoner 
edu.stanford.smi.protegex.owl.swrl.model.SWRLConstants
          Is this still needed? 
 

Deprecated Classes
edu.stanford.smi.protegex.owl.ui.components.triples.DeleteValueAction
          should be deleted 
edu.stanford.smi.protegex.owl.ui.existential.Existential
          This class should not be used - it has been replaced with ExistentialFillerProvider 
edu.stanford.smi.protegex.owl.ui.metadata.NameDocumentationWidget
          no longer encouraged 
edu.stanford.smi.protegex.owl.model.framestore.OWLFrameFactoryInvocationHandler
          - Not needed anymore. The conversion of the frames into OWL Java objects is handled in a different way 
edu.stanford.smi.protegex.owl.ui.metadata.OWLMetadataWidget
            
edu.stanford.smi.protegex.owl.ui.testing.OWLTestSettingsAction
          use OWLSettingsPanel directly (currently within PreferencesPanel) 
edu.stanford.smi.protegex.owl.ui.metadata.RDFResourceNameWidget
          is no longer needed because the name is now shown in the header 
edu.stanford.smi.protegex.owl.ui.widget.ResourceListWidget
          no longer really needed 
 

Deprecated Fields
edu.stanford.smi.protegex.owl.model.XSPNames.BASE
          use the helper method XSPNames.get(OWLModel owlModel, int resourceID) 
edu.stanford.smi.protegex.owl.model.OWLNames.CLASSIFICATION_STATUS_INCONSISTENT
          Please use the isConsistent method on OWLNamedClass. 
edu.stanford.smi.protegex.owl.ui.widget.OWLUI.CODE_MENU
          use constant from AbstractOWLModelAction 
edu.stanford.smi.protegex.owl.ui.resourcedisplay.ResourceDisplay.DEFAULT_TYPE_CLS
            
edu.stanford.smi.protegex.owl.ui.resourcedisplay.ResourceDisplay.DEFAULT_TYPE_INSTANCE
            
edu.stanford.smi.protegex.owl.ui.resourcedisplay.ResourceDisplay.DEFAULT_TYPE_SLOT
            
edu.stanford.smi.protegex.owl.model.OWLNames.Slot.EQUIVALENT_PROPERTIES
          use EQUIVALENT_PROPERTY instead 
edu.stanford.smi.protegex.owl.model.ProtegeNames.FILE
          use ProtegeNames.PROTEGE_OWL_ONTOLOGY 
edu.stanford.smi.protegex.owl.model.XSPNames.FRACTION_DIGITS
          use the helper method XSPNames.get(int resourceID) 
edu.stanford.smi.protegex.owl.ui.cls.ChangeMetaclassOfSubclassesAction.GROUP
          use ChangeMetaclassAction.GROUP 
edu.stanford.smi.protegex.owl.model.RDFSNames.Slot.LABELS
          use LABEL 
edu.stanford.smi.protegex.owl.model.XSPNames.LENGTH
          use the helper method XSPNames.get(int resourceID) 
edu.stanford.smi.protegex.owl.model.RDFSNames.Cls.LITERAL
          This is not a class. Use RDFSNames.LITERAL instead. 
edu.stanford.smi.protegex.owl.inference.dig.reasoner.DefaultDIGReasoner.log
          Use DIGReasonerPreferences to set logging 
edu.stanford.smi.protegex.owl.model.XSPNames.MAX_EXCLUSIVE
          use the helper method XSPNames.get(int resourceID) 
edu.stanford.smi.protegex.owl.model.XSPNames.MAX_INCLUSIVE
          use the helper method XSPNames.get(int resourceID) 
edu.stanford.smi.protegex.owl.model.XSPNames.MAX_LENGTH
          use the helper method XSPNames.get(int resourceID) 
edu.stanford.smi.protegex.owl.model.XSPNames.MIN_EXCLUSIVE
          use the helper method XSPNames.get(int resourceID) 
edu.stanford.smi.protegex.owl.model.XSPNames.MIN_INCLUSIVE
          use the helper method XSPNames.get(int resourceID) 
edu.stanford.smi.protegex.owl.model.XSPNames.MIN_LENGTH
          use the helper method XSPNames.get(int resourceID) 
edu.stanford.smi.protegex.owl.model.ProtegeNames.NS
          use ProtegeNames.PROTEGE_OWL_NAMESPACE 
edu.stanford.smi.protegex.owl.ui.widget.OWLUI.OWL_MENU
          use constant from AbstractOWLModelAction 
edu.stanford.smi.protegex.owl.model.XSPNames.PATTERN
          use the helper method XSPNames.get(int resourceID) 
edu.stanford.smi.protegex.owl.model.XSPNames.PREFIX
          use XSPNames.DEFAULT_PREFIX 
edu.stanford.smi.protegex.owl.jena.Jena.ROOT_FOLDER
          use ProtegeOWL.PLUGIN_FOLDER instead 
edu.stanford.smi.protegex.owl.ui.widget.OWLUI.TOOLS_MENU
          use constant from AbstractOWLModelAction 
edu.stanford.smi.protegex.owl.model.XSPNames.TOTAL_DIGITS
          use the helper method XSPNames.get(int resourceID) 
 

Deprecated Methods
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.addClsListener(Cls, ClsListener)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.addClsListener(ClsListener)
            
edu.stanford.smi.protegex.owl.model.ProtegeCls.addClsListener(ClsListener)
            
edu.stanford.smi.protegex.owl.model.ProtegeCls.addDirectSuperclass(Cls)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.addDirectSuperclass(Cls, Cls)
            
edu.stanford.smi.protegex.owl.model.ProtegeSlot.addDirectSuperslot(Slot)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.addDirectSuperslot(Slot, Slot)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.addDirectTemplateSlot(Cls, Slot)
            
edu.stanford.smi.protegex.owl.model.ProtegeCls.addDirectTemplateSlot(Slot)
            
edu.stanford.smi.protegex.owl.model.ProtegeInstance.addDirectType(Cls)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.addDirectType(Instance, Cls)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.addFacetListener(Facet, FacetListener)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.addFacetListener(FacetListener)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.addFrameListener(Frame, FrameListener)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.addFrameListener(FrameListener)
            
edu.stanford.smi.protegex.owl.model.ProtegeInstance.addFrameListener(FrameListener)
            
edu.stanford.smi.protegex.owl.jena.OWLFilesPlugin.addImport(String, String)
            
edu.stanford.smi.protegex.owl.model.OWLOntology.addImports(RDFExternalResource)
          use version with RDFUntypedResource instead 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.addInstance(Instance, String, Cls, boolean)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.addInstanceListener(Instance, InstanceListener)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.addInstanceListener(InstanceListener)
            
edu.stanford.smi.protegex.owl.model.ProtegeInstance.addInstanceListener(InstanceListener)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.addKnowledgeBaseListener(KnowledgeBaseListener)
            
edu.stanford.smi.protegex.owl.model.ProtegeInstance.addOwnFacetValue(Slot, Facet, Object)
          no OWL equivalent 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.addOwnSlotValue(Frame, Slot, Object)
            
edu.stanford.smi.protegex.owl.model.ProtegeInstance.addOwnSlotValue(Slot, Object)
            
edu.stanford.smi.protegex.owl.ui.results.ResultsPanelManager.addResultsPanel(ResultsPanel, boolean)
          use the version with the owlModel argument 
edu.stanford.smi.protegex.owl.model.ProtegeSlot.addSlotListener(SlotListener)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.addSlotListener(SlotListener)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.addSlotListener(Slot, SlotListener)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.addTemplateFacetValue(Cls, Slot, Facet, Object)
          not supported in OWL 
edu.stanford.smi.protegex.owl.model.ProtegeCls.addTemplateFacetValue(Slot, Facet, Object)
          no OWL equivalent 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.addTemplateSlotValue(Cls, Slot, Object)
          not supported in OWL 
edu.stanford.smi.protegex.owl.model.ProtegeCls.addTemplateSlotValue(Slot, Object)
          no OWL equivalent 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.areValidOwnSlotValues(Frame, Slot, Collection)
          this method is based on facets which are not supported in OWL 
edu.stanford.smi.protegex.owl.model.ProtegeInstance.areValidOwnSlotValues(Slot, Collection)
          not needed 
edu.stanford.smi.protegex.owl.model.event.ProtegeFrameListener.browserTextChanged(FrameEvent)
            
edu.stanford.smi.protegex.owl.model.event.PropertyValueAdapter.browserTextChanged(FrameEvent)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.clearAllListeners()
          whatever this does 
edu.stanford.smi.protegex.owl.ui.results.ResultsPanelManager.closeResultsPanel(ResultsPanel)
          use the other version instead 
edu.stanford.smi.protegex.owl.model.event.ProtegeKnowledgeBaseListener.clsCreated(KnowledgeBaseEvent)
            
edu.stanford.smi.protegex.owl.model.event.ModelAdapter.clsCreated(KnowledgeBaseEvent)
            
edu.stanford.smi.protegex.owl.model.event.ProtegeKnowledgeBaseListener.clsDeleted(KnowledgeBaseEvent)
            
edu.stanford.smi.protegex.owl.model.event.ModelAdapter.clsDeleted(KnowledgeBaseEvent)
            
edu.stanford.smi.protegex.owl.model.impl.OWLUtil.confirmSaveAndReload()
          use the version with project parameter instead 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.containsFrame(String)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeInstance.copy(KnowledgeBase, Map, boolean)
          not needed 
edu.stanford.smi.protegex.owl.model.impl.OWLUtil.createClone(Cls)
          use CloneFactory and ResourceCopier instead 
edu.stanford.smi.protegex.owl.model.impl.OWLUtil.createClone(OWLModel, String)
          use CloneFactory and ResourceCopier instead 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.createCls(FrameID, Collection, Collection, boolean)
          not needed in OWL 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.createCls(String, Collection)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.createCls(String, Collection, Cls)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.createCls(String, Collection, Cls, boolean)
          not needed in OWL 
edu.stanford.smi.protegex.owl.model.ProtegeCls.createDirectInstance(String)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.createFacet(String)
          no OWL equivalent 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.createFacet(String, Cls, boolean)
          no OWL equivalent 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.createInstance(FrameID, Cls, boolean)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.createInstance(FrameID, Collection, boolean)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.createInstance(String, Cls)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.createInstance(String, Cls, boolean)
          not needed 
edu.stanford.smi.protegex.owl.model.OWLModel.createOWLOntology(String)
          developers should not need to create an owl ontology. There is a rename method in OWLUtils. 
edu.stanford.smi.protegex.owl.model.OWLModel.createOWLOntology(String, String)
          use the other createOWLOntology method instead 
edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel.createOWLOntology(String, String)
            
edu.stanford.smi.protegex.owl.model.OWLModel.createRDFExternalResource(String)
          use createRDFUntypedResource instead 
edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel.createRDFExternalResource(String)
            
edu.stanford.smi.protegex.owl.inference.protegeowl.ReasonerManager.createReasoner(OWLModel)
          Use createProtegeReasoner(owlModel, DefaultProtegeOWLReasoner.class) 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.createSimpleInstance(FrameID, Collection, boolean)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.createSlot(String)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.createSlot(String, Cls)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.createSlot(String, Cls, boolean)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.createSlot(String, Cls, Collection, boolean)
            
edu.stanford.smi.protegex.owl.ui.cls.AssertedClassesPanel.createSubclassPane(Action, RDFSNamedClass, Action, Action)
            
edu.stanford.smi.protegex.owl.model.ProtegeInstance.deepCopy(KnowledgeBase, Map)
          not needed 
edu.stanford.smi.protegex.owl.model.event.ProtegeKnowledgeBaseListener.defaultClsMetaClsChanged(KnowledgeBaseEvent)
          not needed 
edu.stanford.smi.protegex.owl.model.event.ModelAdapter.defaultClsMetaClsChanged(KnowledgeBaseEvent)
            
edu.stanford.smi.protegex.owl.model.event.ProtegeKnowledgeBaseListener.defaultFacetMetaClsChanged(KnowledgeBaseEvent)
          not needed 
edu.stanford.smi.protegex.owl.model.event.ModelAdapter.defaultFacetMetaClsChanged(KnowledgeBaseEvent)
            
edu.stanford.smi.protegex.owl.model.event.ProtegeKnowledgeBaseListener.defaultSlotMetaClsChanged(KnowledgeBaseEvent)
          not needed 
edu.stanford.smi.protegex.owl.model.event.ModelAdapter.defaultSlotMetaClsChanged(KnowledgeBaseEvent)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.deleteCls(Cls)
            
edu.stanford.smi.protegex.owl.model.event.ProtegeFrameListener.deleted(FrameEvent)
          did not work in Protege anyway 
edu.stanford.smi.protegex.owl.model.event.PropertyValueAdapter.deleted(FrameEvent)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.deleteFacet(Facet)
          not needed in OWL 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.deleteFrame(Frame)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.deleteInstance(Instance)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.deleteSlot(Slot)
            
edu.stanford.smi.protegex.owl.model.event.ProtegeClsListener.directInstanceAdded(ClsEvent)
            
edu.stanford.smi.protegex.owl.model.event.ClassAdapter.directInstanceAdded(ClsEvent)
            
edu.stanford.smi.protegex.owl.model.event.ProtegeClsListener.directInstanceRemoved(ClsEvent)
            
edu.stanford.smi.protegex.owl.model.event.ClassAdapter.directInstanceRemoved(ClsEvent)
            
edu.stanford.smi.protegex.owl.model.event.ProtegeClsListener.directSubclassAdded(ClsEvent)
            
edu.stanford.smi.protegex.owl.model.event.ClassAdapter.directSubclassAdded(ClsEvent)
            
edu.stanford.smi.protegex.owl.model.event.ProtegeClsListener.directSubclassMoved(ClsEvent)
          not supported by OWL 
edu.stanford.smi.protegex.owl.model.event.ClassAdapter.directSubclassMoved(ClsEvent)
            
edu.stanford.smi.protegex.owl.model.event.ProtegeClsListener.directSubclassRemoved(ClsEvent)
            
edu.stanford.smi.protegex.owl.model.event.ClassAdapter.directSubclassRemoved(ClsEvent)
            
edu.stanford.smi.protegex.owl.model.event.ProtegeSlotListener.directSubslotAdded(SlotEvent)
            
edu.stanford.smi.protegex.owl.model.event.PropertyAdapter.directSubslotAdded(SlotEvent)
            
edu.stanford.smi.protegex.owl.model.event.ProtegeSlotListener.directSubslotMoved(SlotEvent)
          not supported in OWL 
edu.stanford.smi.protegex.owl.model.event.PropertyAdapter.directSubslotMoved(SlotEvent)
            
edu.stanford.smi.protegex.owl.model.event.ProtegeSlotListener.directSubslotRemoved(SlotEvent)
            
edu.stanford.smi.protegex.owl.model.event.PropertyAdapter.directSubslotRemoved(SlotEvent)
            
edu.stanford.smi.protegex.owl.model.event.ProtegeClsListener.directSuperclassAdded(ClsEvent)
            
edu.stanford.smi.protegex.owl.model.event.ClassAdapter.directSuperclassAdded(ClsEvent)
            
edu.stanford.smi.protegex.owl.model.event.ProtegeClsListener.directSuperclassRemoved(ClsEvent)
            
edu.stanford.smi.protegex.owl.model.event.ClassAdapter.directSuperclassRemoved(ClsEvent)
            
edu.stanford.smi.protegex.owl.model.event.ProtegeSlotListener.directSuperslotAdded(SlotEvent)
            
edu.stanford.smi.protegex.owl.model.event.PropertyAdapter.directSuperslotAdded(SlotEvent)
            
edu.stanford.smi.protegex.owl.model.event.ProtegeSlotListener.directSuperslotRemoved(SlotEvent)
            
edu.stanford.smi.protegex.owl.model.event.PropertyAdapter.directSuperslotRemoved(SlotEvent)
            
edu.stanford.smi.protegex.owl.model.event.ProtegeInstanceListener.directTypeAdded(InstanceEvent)
            
edu.stanford.smi.protegex.owl.model.event.ProtegeInstanceListener.directTypeRemoved(InstanceEvent)
            
edu.stanford.smi.protegex.owl.ui.resourcedisplay.ResourceDisplay.displayHostInstance(Instance)
            
edu.stanford.smi.protegex.owl.ui.cls.OWLClassesTab.ensureClsSelected(Cls, int)
            
edu.stanford.smi.protegex.owl.model.event.ProtegeKnowledgeBaseListener.facetCreated(KnowledgeBaseEvent)
          not needed 
edu.stanford.smi.protegex.owl.model.event.ModelAdapter.facetCreated(KnowledgeBaseEvent)
            
edu.stanford.smi.protegex.owl.model.event.ProtegeKnowledgeBaseListener.facetDeleted(KnowledgeBaseEvent)
          not needed 
edu.stanford.smi.protegex.owl.model.event.ModelAdapter.facetDeleted(KnowledgeBaseEvent)
            
edu.stanford.smi.protegex.owl.model.event.ProtegeKnowledgeBaseListener.frameNameChanged(KnowledgeBaseEvent)
            
edu.stanford.smi.protegex.owl.model.event.ModelAdapter.frameNameChanged(KnowledgeBaseEvent)
            
edu.stanford.smi.protegex.owl.model.ProtegeSlot.getAllowedClses()
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getAllowedClses(Slot)
            
edu.stanford.smi.protegex.owl.model.ProtegeSlot.getAllowedParents()
          set the value of the protege:allowedParents property directly 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getAllowedParents(Slot)
          not supported in OWL 
edu.stanford.smi.protegex.owl.model.ProtegeSlot.getAllowedValues()
          compare to OWLDataRange as range 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getAllowedValues(Slot)
            
edu.stanford.smi.protegex.owl.model.ProtegeSlot.getAllowsMultipleValues()
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getAllowsMultipleValues(Slot)
            
edu.stanford.smi.protegex.owl.model.OWLModel.getAnonymousRootCls()
          internal Protege detail 
edu.stanford.smi.protegex.owl.ui.conditions.ConditionsWidget.getAssertedConditionsWidget()
            
edu.stanford.smi.protegex.owl.model.ProtegeSlot.getAssociatedFacet()
          no OWL equivalent 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getAssociatedFacet(Slot)
          not supported in OWL 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getAssociatedSlot(Facet)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getBrowserText(Instance)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getCls(String)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getClsCount()
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getClses()
            
edu.stanford.smi.protegex.owl.ui.cls.OWLClassesTab.getClsesTab(Component)
          use getOWLClassesTab instead 
edu.stanford.smi.protegex.owl.model.classparser.compact.JavaCharStream.getColumn()
            
edu.stanford.smi.protegex.owl.model.classparser.dl.JavaCharStream.getColumn()
            
edu.stanford.smi.protegex.owl.model.classparser.manchester.JavaCharStream.getColumn()
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getCommandManager()
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeCls.getConcreteSubclasses()
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getCurrentUsers()
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getDefaultClsMetaCls()
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getDefaultFacetMetaCls()
          not supported in OWL 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getDefaultSlotMetaCls()
            
edu.stanford.smi.protegex.owl.model.ProtegeSlot.getDefaultValues()
          no OWL equivalent 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getDefaultValues(Slot)
          not supported in OWL 
edu.stanford.smi.protegex.owl.ui.icons.OWLIcons.getDefinedClsIcon()
          please access constant directly 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getDirectBrowserSlotPattern(Cls)
            
edu.stanford.smi.protegex.owl.model.ProtegeSlot.getDirectDomain()
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getDirectDomain(Slot)
            
edu.stanford.smi.protegex.owl.model.ProtegeCls.getDirectInstanceCount()
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getDirectInstanceCount(Cls)
            
edu.stanford.smi.protegex.owl.model.ProtegeCls.getDirectInstances()
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getDirectInstances(Cls)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getDirectlyOverriddenTemplateFacets(Cls, Slot)
          not supported in OWL 
edu.stanford.smi.protegex.owl.model.ProtegeCls.getDirectlyOverriddenTemplateFacets(Slot)
          no OWL equivalent 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getDirectlyOverriddenTemplateSlots(Cls)
          not supported in OWL 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getDirectOwnSlotValue(Frame, Slot)
            
edu.stanford.smi.protegex.owl.model.ProtegeInstance.getDirectOwnSlotValue(Slot)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getDirectOwnSlotValues(Frame, Slot)
            
edu.stanford.smi.protegex.owl.model.ProtegeInstance.getDirectOwnSlotValues(Slot)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getDirectOwnSlotValuesClosure(Frame, Slot)
          not needed 
edu.stanford.smi.protegex.owl.model.OWLNamedClass.getDirectRestrictions()
          will be deleted shortly, replaced with getRestrictions(false) 
edu.stanford.smi.protegex.owl.model.ProtegeCls.getDirectSubclassCount()
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getDirectSubclassCount(Cls)
            
edu.stanford.smi.protegex.owl.model.ProtegeCls.getDirectSubclasses()
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getDirectSubclasses(Cls)
            
edu.stanford.smi.protegex.owl.model.ProtegeSlot.getDirectSubslotCount()
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getDirectSubslotCount(Slot)
            
edu.stanford.smi.protegex.owl.model.ProtegeSlot.getDirectSubslots()
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getDirectSubslots(Slot)
            
edu.stanford.smi.protegex.owl.model.ProtegeCls.getDirectSuperclassCount()
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getDirectSuperclassCount(Cls)
            
edu.stanford.smi.protegex.owl.model.ProtegeCls.getDirectSuperclasses()
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getDirectSuperclasses(Cls)
            
edu.stanford.smi.protegex.owl.model.ProtegeSlot.getDirectSuperslotCount()
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getDirectSuperslotCount(Slot)
            
edu.stanford.smi.protegex.owl.model.ProtegeSlot.getDirectSuperslots()
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getDirectSuperslots(Slot)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getDirectTemplateFacetValues(Cls, Slot, Facet)
          not supported in OWL 
edu.stanford.smi.protegex.owl.model.ProtegeCls.getDirectTemplateFacetValues(Slot, Facet)
          no OWL equivalent 
edu.stanford.smi.protegex.owl.model.ProtegeCls.getDirectTemplateSlots()
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getDirectTemplateSlots(Cls)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getDirectTemplateSlotValues(Cls, Slot)
          not supported in OWL 
edu.stanford.smi.protegex.owl.model.ProtegeCls.getDirectTemplateSlotValues(Slot)
          no OWL equivalent 
edu.stanford.smi.protegex.owl.model.ProtegeInstance.getDirectType()
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getDirectType(Instance)
            
edu.stanford.smi.protegex.owl.model.ProtegeInstance.getDirectTypes()
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getDirectTypes(Instance)
            
edu.stanford.smi.protegex.owl.model.ProtegeSlot.getDocumentation()
            
edu.stanford.smi.protegex.owl.model.ProtegeInstance.getDocumentation()
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getDocumentation(Frame)
            
edu.stanford.smi.protegex.owl.model.ProtegeSlot.getDomain()
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getDomain(Slot)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getFacet(String)
          not supported in OWL 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getFacetCount()
          not supported in OWL 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getFacets()
          not supported in OWL 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getFrame(FrameID)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getFrame(String)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getFrameCount()
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getFrameCounts()
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getFrameCreationTimestamp(Frame)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getFrameCreator(Frame)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getFrameFactory()
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getFrameLastModificationTimestamp(Frame)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getFrameLastModifier(Frame)
          not needed 
edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel.getFrameNameForURI(String, boolean)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getFrameNameMatches(String, int)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getFrameNamePrefix()
          not supported in OWL 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getFrames()
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getFrameStores()
          internal Protege detail 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getFramesWithValue(Slot, Facet, boolean, Object)
            
edu.stanford.smi.protegex.owl.model.ProtegeInstance.getIcon()
          use ProtegeUI.getIcon() instead 
edu.stanford.smi.protegex.owl.ui.conditions.ConditionsWidget.getInferredConditionsWidget()
            
edu.stanford.smi.protegex.owl.ui.widget.PropertyWidget.getInstance()
            
edu.stanford.smi.protegex.owl.ui.widget.AbstractPropertyWidget.getInstance()
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getInstance(String)
            
edu.stanford.smi.protegex.owl.model.ProtegeCls.getInstanceCount()
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getInstanceCount(Cls)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getInstances()
            
edu.stanford.smi.protegex.owl.model.ProtegeCls.getInstances()
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getInstances(Cls)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getInvalidFrameNameDescription(String, Frame)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getInvalidOwnSlotValuesText(Frame, Slot, Collection)
          not supported 
edu.stanford.smi.protegex.owl.model.ProtegeInstance.getInvalidOwnSlotValuesText(Slot, Collection)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getInvalidOwnSlotValueText(Frame, Slot, Object)
          not supported 
edu.stanford.smi.protegex.owl.model.ProtegeInstance.getInvalidOwnSlotValueText(Slot, Object)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeSlot.getInverseSlot()
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getInverseSlot(Slot)
            
edu.stanford.smi.protegex.owl.model.ProtegeInstance.getKnowledgeBase()
            
edu.stanford.smi.protegex.owl.ui.widget.AbstractTabWidget.getKnowledgeBase()
          use getOWLModel() instead 
edu.stanford.smi.protegex.owl.resource.OWLText.getLatestCompatibleBuild()
           
edu.stanford.smi.protegex.owl.model.classparser.compact.JavaCharStream.getLine()
            
edu.stanford.smi.protegex.owl.model.classparser.dl.JavaCharStream.getLine()
            
edu.stanford.smi.protegex.owl.model.classparser.manchester.JavaCharStream.getLine()
            
edu.stanford.smi.protegex.owl.model.framestore.OWLFrameStore.getLiteralValues(List)
          This method was moved into AbstractOWLModel 
edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel.getLocalNameForResourceName(String)
          Use AbstractOWLModel.getLocalNameForURI(String) 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getMatchingFrames(Slot, Facet, boolean, String, int)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getMatchingReferences(String, int)
            
edu.stanford.smi.protegex.owl.model.ProtegeSlot.getMaximumCardinality()
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getMaximumCardinality(Slot)
            
edu.stanford.smi.protegex.owl.model.ProtegeSlot.getMaximumValue()
          no OWL equivalent 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getMaximumValue(Slot)
          not supported in OWL 
edu.stanford.smi.protegex.owl.model.ProtegeSlot.getMinimumCardinality()
          no OWL equivalent 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getMinimumCardinality(Slot)
          not supported in OWL 
edu.stanford.smi.protegex.owl.model.ProtegeSlot.getMinimumValue()
          no OWL equivalent 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getMinimumValue(Slot)
          not supported in OWL 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getName()
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getName(Frame)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getNameSlot()
          not supported in OWL 
edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel.getNamespaceForResourceName(String)
          Use AbstractOWLModel.getNamespaceForURI(String) 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getNextFrameNumber()
          not needed 
edu.stanford.smi.protegex.owl.model.OWLEnumeratedClass.getOneOfValues()
          use getOneOf instead 
edu.stanford.smi.protegex.owl.model.OWLOntology.getOntologyURI()
          now getURI() can be used for that 
edu.stanford.smi.protegex.owl.jena.Jena.getOntPolicyFilePath(Project)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getOverriddenTemplateFacets(Cls, Slot)
          not supported in OWL 
edu.stanford.smi.protegex.owl.model.ProtegeCls.getOverriddenTemplateFacets(Slot)
          no OWL equivalent 
edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel.getOWLClasses()
          use getRDFSClasses instead 
edu.stanford.smi.protegex.owl.model.OWLModel.getOWLOntologyByURI(String)
          use #getOWLOntologyByURI(URI uri) DO NOT PASS IN THE URI OF AN UNRESOLVED IMPORT AS THIS WILL CAUSE A Class Cast Exception 
edu.stanford.smi.protegex.owl.model.ProtegeInstance.getOwnFacetValue(Slot, Facet)
          no OWL equivalent 
edu.stanford.smi.protegex.owl.model.ProtegeInstance.getOwnFacetValues(Slot, Facet)
          no OWL equivalent 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getOwnSlotAllowsMultipleValues(Frame, Slot)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeInstance.getOwnSlotAllowsMultipleValues(Slot)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getOwnSlotAndSubslotValues(Frame, Slot)
            
edu.stanford.smi.protegex.owl.model.ProtegeInstance.getOwnSlotAndSubslotValues(Slot)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getOwnSlotDefaultValues(Frame, Slot)
          not supported in OWL 
edu.stanford.smi.protegex.owl.model.ProtegeInstance.getOwnSlotDefaultValues(Slot)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getOwnSlotFacets(Frame, Slot)
          not supported in OWL 
edu.stanford.smi.protegex.owl.model.ProtegeInstance.getOwnSlotFacets(Slot)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getOwnSlotFacetValues(Frame, Slot, Facet)
          not supported in OWL 
edu.stanford.smi.protegex.owl.model.ProtegeInstance.getOwnSlotFacetValues(Slot, Facet)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeInstance.getOwnSlots()
          replaced but includes subproperties! 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getOwnSlots(Frame)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getOwnSlotValue(Frame, Slot)
            
edu.stanford.smi.protegex.owl.model.ProtegeInstance.getOwnSlotValue(Slot)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getOwnSlotValueCount(Frame, Slot)
            
edu.stanford.smi.protegex.owl.model.ProtegeInstance.getOwnSlotValueCount(Slot)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getOwnSlotValues(Frame, Slot)
            
edu.stanford.smi.protegex.owl.model.ProtegeInstance.getOwnSlotValues(Slot)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getOwnSlotValueType(Frame, Slot)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeInstance.getOwnSlotValueType(Slot)
          not needed 
edu.stanford.smi.protegex.owl.model.RDFSClass.getParsableExpression()
          not needed anymore 
edu.stanford.smi.protegex.owl.ui.code.OWLTextFormatter.getParseableString(String)
          Moved to CompactParserUtil - this method is no longer needed as it will be called by the parser on the fly 
edu.stanford.smi.protegex.owl.model.OWLModel.getRDFExternalResource(String)
          use getRDFUntypedResource instead 
edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel.getRDFExternalResource(String)
            
edu.stanford.smi.protegex.owl.model.OWLModel.getRDFExternalResourceClass()
          use getRDFUntypedResourcesClass 
edu.stanford.smi.protegex.owl.model.impl.OWLSystemFrames.getRdfsLiteralClass()
          This is based on a wrong premise. This is not a class. Using this can cause serious problems. 
edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel.getRDFSLiteralClass()
          This is based on a wrong premise - there is no such class. Using this method can cause problems. 
edu.stanford.smi.protegex.owl.model.ProtegeInstance.getReachableSimpleInstances()
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getReachableSimpleInstances(Collection)
          not needed 
edu.stanford.smi.protegex.owl.inference.protegeowl.ReasonerManager.getReasoner(OWLModel)
            
edu.stanford.smi.protegex.owl.inference.protegeowl.ReasonerManager.getReasoner(OWLModel, boolean)
          Use createProtegeReasoner(owlModel, DefaultProtegeOWLReasoner.class) 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getReferences(Object, int)
            
edu.stanford.smi.protegex.owl.ui.cls.OWLClassesTab.getResourceDisplay()
            
edu.stanford.smi.protegex.owl.ui.results.ResultsPanelManager.getResultsPanelByName(String)
          use the other version please 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getRootClses()
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getRootClsMetaCls()
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getRootFacetMetaCls()
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getRootSlotMetaCls()
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getRootSlots()
          not needed 
edu.stanford.smi.protegex.owl.ui.owltable.SymbolTable.getSelectedOWLInstance()
          renamed to getSelectedResource 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getSimpleInstanceCount()
          not needed 
edu.stanford.smi.protegex.owl.ui.widget.PropertyWidget.getSlot()
            
edu.stanford.smi.protegex.owl.ui.widget.AbstractPropertyWidget.getSlot()
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getSlot(String)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getSlotCount()
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getSlots()
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getSlotValueLastModificationTimestamp(Frame, Slot, boolean)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getSlotValueLastModifier(Frame, Slot, boolean)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeCls.getSubclasses()
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getSubclasses(Cls)
            
edu.stanford.smi.protegex.owl.model.ProtegeSlot.getSubslots()
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getSubslots(Slot)
            
edu.stanford.smi.protegex.owl.model.ProtegeCls.getSuperclasses()
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getSuperclasses(Cls)
            
edu.stanford.smi.protegex.owl.model.ProtegeSlot.getSuperslots()
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getSuperslots(Slot)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getTemplateFacets(Cls, Slot)
          not supported in OWL 
edu.stanford.smi.protegex.owl.model.ProtegeCls.getTemplateFacets(Slot)
          no OWL equivalent 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getTemplateFacetValue(Cls, Slot, Facet)
          not supported in OWL 
edu.stanford.smi.protegex.owl.model.ProtegeCls.getTemplateFacetValue(Slot, Facet)
          no OWL equivalent 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getTemplateFacetValues(Cls, Slot, Facet)
          not supported in OWL 
edu.stanford.smi.protegex.owl.model.ProtegeCls.getTemplateFacetValues(Slot, Facet)
          no OWL equivalent 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getTemplateSlotAllowedClses(Cls, Slot)
          not supported in OWL 
edu.stanford.smi.protegex.owl.model.ProtegeCls.getTemplateSlotAllowedClses(Slot)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getTemplateSlotAllowedParents(Cls, Slot)
          not supported in OWL 
edu.stanford.smi.protegex.owl.model.ProtegeCls.getTemplateSlotAllowedParents(Slot)
          no OWL equivalent 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getTemplateSlotAllowedValues(Cls, Slot)
          not supported in OWL 
edu.stanford.smi.protegex.owl.model.ProtegeCls.getTemplateSlotAllowedValues(Slot)
          no OWL equivalent 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getTemplateSlotAllowsMultipleValues(Cls, Slot)
          not supported in OWL 
edu.stanford.smi.protegex.owl.model.ProtegeCls.getTemplateSlotAllowsMultipleValues(Slot)
          no OWL equivalent 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getTemplateSlotDefaultValues(Cls, Slot)
          not supported in OWL 
edu.stanford.smi.protegex.owl.model.ProtegeCls.getTemplateSlotDefaultValues(Slot)
          no OWL equivalent 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getTemplateSlotDocumentation(Cls, Slot)
          not supported in OWL 
edu.stanford.smi.protegex.owl.model.ProtegeCls.getTemplateSlotDocumentation(Slot)
          no OWL equivalent 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getTemplateSlotMaximumCardinality(Cls, Slot)
          not supported in OWL 
edu.stanford.smi.protegex.owl.model.ProtegeCls.getTemplateSlotMaximumCardinality(Slot)
          no OWL equivalent 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getTemplateSlotMaximumValue(Cls, Slot)
          not supported in OWL 
edu.stanford.smi.protegex.owl.model.ProtegeCls.getTemplateSlotMaximumValue(Slot)
          no OWL equivalent 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getTemplateSlotMinimumCardinality(Cls, Slot)
          not supported in OWL 
edu.stanford.smi.protegex.owl.model.ProtegeCls.getTemplateSlotMinimumCardinality(Slot)
          no OWL equivalent 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getTemplateSlotMinimumValue(Cls, Slot)
          not supported in OWL 
edu.stanford.smi.protegex.owl.model.ProtegeCls.getTemplateSlotMinimumValue(Slot)
          no OWL equivalent 
edu.stanford.smi.protegex.owl.model.ProtegeCls.getTemplateSlots()
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getTemplateSlots(Cls)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getTemplateSlotValue(Cls, Slot)
          not supported in OWL 
edu.stanford.smi.protegex.owl.model.ProtegeCls.getTemplateSlotValue(Slot)
          no OWL equivalent 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getTemplateSlotValues(Cls, Slot)
          not supported in OWL 
edu.stanford.smi.protegex.owl.model.ProtegeCls.getTemplateSlotValues(Slot)
          no OWL equivalent 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getTemplateSlotValueType(Cls, Slot)
          not supported in OWL 
edu.stanford.smi.protegex.owl.model.ProtegeCls.getTemplateSlotValueType(Slot)
          no OWL equivalent 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getUnreachableSimpleInstances(Collection)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getUserName()
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getValueChecking()
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getValues(Slot)
          not supported in OWL 
edu.stanford.smi.protegex.owl.model.ProtegeSlot.getValueType()
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getValueType(Slot)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getVersionString()
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeCls.getVisibleDirectSubclassCount()
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeCls.getVisibleDirectSubclasses()
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeCls.getVisibleTemplateSlots()
          not needed 
edu.stanford.smi.protegex.owl.ui.widget.OWLUI.handleError(Throwable)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.hasDirectlyOverriddenTemplateFacet(Cls, Slot, Facet)
          not supported in OWL 
edu.stanford.smi.protegex.owl.model.ProtegeCls.hasDirectlyOverriddenTemplateFacet(Slot, Facet)
          no OWL equivalent 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.hasDirectlyOverriddenTemplateSlot(Cls, Slot)
          not supported in OWL 
edu.stanford.smi.protegex.owl.model.ProtegeCls.hasDirectlyOverriddenTemplateSlot(Slot)
          no OWL equivalent 
edu.stanford.smi.protegex.owl.model.ProtegeCls.hasDirectSuperclass(Cls)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.hasDirectSuperclass(Cls, Cls)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeSlot.hasDirectSuperslot(Slot)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.hasDirectSuperslot(Slot, Slot)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.hasDirectTemplateSlot(Cls, Slot)
            
edu.stanford.smi.protegex.owl.model.ProtegeCls.hasDirectTemplateSlot(Slot)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeInstance.hasDirectType(Cls)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.hasDirectType(Instance, Cls)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.hasInheritedTemplateSlot(Cls, Slot)
            
edu.stanford.smi.protegex.owl.model.ProtegeCls.hasInheritedTemplateSlot(Slot)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.hasOverriddenTemplateFacet(Cls, Slot, Facet)
          not supported in OWL 
edu.stanford.smi.protegex.owl.model.ProtegeCls.hasOverriddenTemplateFacet(Slot, Facet)
          no OWL equivalent 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.hasOverriddenTemplateSlot(Cls, Slot)
          not supported in OWL 
edu.stanford.smi.protegex.owl.model.ProtegeCls.hasOverriddenTemplateSlot(Slot)
          no OWL equivalent 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.hasOwnSlot(Frame, Slot)
          not needed (get domain of rdf:type instead) 
edu.stanford.smi.protegex.owl.model.ProtegeInstance.hasOwnSlot(Slot)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.hasSlotValueAtSomeFrame(Slot)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeCls.hasSuperclass(Cls)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.hasSuperclass(Cls, Cls)
            
edu.stanford.smi.protegex.owl.model.ProtegeSlot.hasSuperslot(Slot)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.hasSuperslot(Slot, Slot)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeCls.hasTemplateFacet(Slot, Facet)
          no OWL equivalent 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.hasTemplateSlot(Cls, Slot)
            
edu.stanford.smi.protegex.owl.model.ProtegeCls.hasTemplateSlot(Slot)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeInstance.hasType(Cls)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.hasType(Instance, Cls)
            
edu.stanford.smi.protegex.owl.model.ProtegeSlot.hasValueAtSomeFrame()
          not needed 
edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel.initializeDefaultAnnotationView()
          - Not called anymore 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.insertFrameStore(FrameStore)
          internal Protege detail 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.insertFrameStore(FrameStore, int)
          internal Protege detail 
edu.stanford.smi.protegex.owl.model.event.ProtegeKnowledgeBaseListener.instanceCreated(KnowledgeBaseEvent)
            
edu.stanford.smi.protegex.owl.model.event.ModelAdapter.instanceCreated(KnowledgeBaseEvent)
            
edu.stanford.smi.protegex.owl.model.event.ProtegeKnowledgeBaseListener.instanceDeleted(KnowledgeBaseEvent)
            
edu.stanford.smi.protegex.owl.model.event.ModelAdapter.instanceDeleted(KnowledgeBaseEvent)
            
edu.stanford.smi.protegex.owl.model.ProtegeCls.isAbstract()
          no OWL equivalent 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.isAbstract(Cls)
          not supported in OWL 
edu.stanford.smi.protegex.owl.model.OWLModel.isAnonymousResource(RDFResource)
            
edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel.isAnonymousResource(RDFResource)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.isAutoUpdatingFacetValues()
          not supported in OWL 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.isCallCachingEnabled()
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeCls.isClsMetaCls()
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.isClsMetaCls(Cls)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeCls.isConcrete()
          no OWL equivalent 
edu.stanford.smi.protegex.owl.ui.widget.OWLUI.isConfirmed(Project, boolean)
            
edu.stanford.smi.protegex.owl.model.ProtegeCls.isDefaultClsMetaCls()
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.isDefaultClsMetaCls(Cls)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeCls.isDefaultFacetMetaCls()
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.isDefaultFacetMetaCls(Cls)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeCls.isDefaultSlotMetaCls()
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.isDefaultSlotMetaCls(Cls)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeCls.isFacetMetaCls()
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.isFacetMetaCls(Cls)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.isJournalingEnabled()
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.isLoading()
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeCls.isMetaCls()
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.isMetaCls(Cls)
          not needed 
edu.stanford.smi.protegex.owl.model.OWLModel.isOWLSystemFrame(Frame)
            
edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel.isOWLSystemFrame(Frame)
            
edu.stanford.smi.protegex.owl.model.ProtegeCls.isRoot()
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeCls.isSlotMetaCls()
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.isSlotMetaCls(Cls)
          not needed 
edu.stanford.smi.protegex.owl.ui.widget.SingleLiteralWidget.isSuitable(Cls, Slot, Facet)
            
edu.stanford.smi.protegex.owl.ui.widget.SingleLiteralAreaWidget.isSuitable(Cls, Slot, Facet)
            
edu.stanford.smi.protegex.owl.ui.widget.OWLTimeWidget.isSuitable(Cls, Slot, Facet)
            
edu.stanford.smi.protegex.owl.ui.widget.OWLDateWidget.isSuitable(Cls, Slot, Facet)
            
edu.stanford.smi.protegex.owl.ui.widget.OWLDateTimeWidget.isSuitable(Cls, Slot, Facet)
            
edu.stanford.smi.protegex.owl.ui.widget.MultiLiteralWidget.isSuitable(Cls, Slot, Facet)
            
edu.stanford.smi.protegex.owl.swrl.ui.SWRLProjectPlugin.isSWRLImported(Project)
          always returns true - swrl is included in the system frames. 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.isValidFrameName(String, Frame)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.isValidOwnSlotValue(Frame, Slot, Object)
          not supported in OWL 
edu.stanford.smi.protegex.owl.model.ProtegeInstance.isValidOwnSlotValue(Slot, Object)
          not needed 
edu.stanford.smi.protegex.owl.jena.JenaOWLModel.load(InputStream, String)
          use OwlProjectFromStreamCreator, OwlProjectFromReaderCreator or OwlDatabaseFromFileCreator 
edu.stanford.smi.protegex.owl.jena.JenaOWLModel.load(Reader, String)
          use OwlProjectFromStreamCreator, OwlProjectFromReaderCreator or OwlDatabaseFromFileCreator 
edu.stanford.smi.protegex.owl.jena.JenaOWLModel.load(URI, String)
          use OwlProjectFromStreamCreator, OwlProjectFromReaderCreator or OwlDatabaseFromFileCreator 
edu.stanford.smi.protegex.owl.jena.JenaOWLModel.load(URI, String, Collection)
          use OwlProjectFromStreamCreator, OwlProjectFromReaderCreator or OwlDatabaseFromFileCreator 
edu.stanford.smi.protegex.owl.model.ProtegeCls.moveDirectSubclass(Cls, Cls)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.moveDirectSubclass(Cls, Cls, Cls)
          not supported in OWL 
edu.stanford.smi.protegex.owl.model.ProtegeSlot.moveDirectSubslot(Slot, Slot)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.moveDirectSubslot(Slot, Slot, Slot)
          not supported in OWL 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.moveDirectTemplateSlot(Cls, Slot, int)
          not supported in OWL 
edu.stanford.smi.protegex.owl.model.ProtegeCls.moveDirectTemplateSlot(Slot, int)
          not needed 
edu.stanford.smi.protegex.owl.model.event.ProtegeFrameListener.nameChanged(FrameEvent)
            
edu.stanford.smi.protegex.owl.model.event.PropertyValueAdapter.nameChanged(FrameEvent)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.notifyVisibilityChanged(Frame)
          not needed 
edu.stanford.smi.protegex.owl.model.event.ProtegeFrameListener.ownFacetAdded(FrameEvent)
          not supported in OWL 
edu.stanford.smi.protegex.owl.model.event.PropertyValueAdapter.ownFacetAdded(FrameEvent)
            
edu.stanford.smi.protegex.owl.model.event.ProtegeFrameListener.ownFacetRemoved(FrameEvent)
          not supported in OWL 
edu.stanford.smi.protegex.owl.model.event.PropertyValueAdapter.ownFacetRemoved(FrameEvent)
            
edu.stanford.smi.protegex.owl.model.event.ProtegeFrameListener.ownFacetValueChanged(FrameEvent)
          not supported in OWL 
edu.stanford.smi.protegex.owl.model.event.PropertyValueAdapter.ownFacetValueChanged(FrameEvent)
            
edu.stanford.smi.protegex.owl.model.event.ProtegeFrameListener.ownSlotAdded(FrameEvent)
          not needed 
edu.stanford.smi.protegex.owl.model.event.PropertyValueAdapter.ownSlotAdded(FrameEvent)
            
edu.stanford.smi.protegex.owl.model.event.ProtegeFrameListener.ownSlotRemoved(FrameEvent)
          not needed 
edu.stanford.smi.protegex.owl.model.event.PropertyValueAdapter.ownSlotRemoved(FrameEvent)
            
edu.stanford.smi.protegex.owl.model.event.ResourceAdapter.ownSlotValueChanged(FrameEvent)
           
edu.stanford.smi.protegex.owl.model.event.ProtegeFrameListener.ownSlotValueChanged(FrameEvent)
            
edu.stanford.smi.protegex.owl.model.event.PropertyValueAdapter.ownSlotValueChanged(FrameEvent)
            
edu.stanford.smi.protegex.owl.ui.conditions.AddClosureAxiomAction.performAction(OWLNamedClass, OWLSomeValuesFrom)
          please use the more generic version 
edu.stanford.smi.protegex.owl.ui.widget.OWLUI.pickConcreteClass(OWLModel, Collection)
          use ProtegeUI.getSelectionDialogFactory()... 
edu.stanford.smi.protegex.owl.ui.widget.OWLUI.pickConcreteClass(OWLModel, Collection, String)
          use ProtegeUI.getSelectionDialogFactory()... 
edu.stanford.smi.protegex.owl.ui.widget.OWLUI.pickConcreteClass(OWLModel, String)
          use ProtegeUI.getSelectionDialogFactory()... 
edu.stanford.smi.protegex.owl.ui.widget.OWLUI.pickOWLNamedClass(OWLModel, Collection, String)
          use ProtegeUI.getSelectionDialogFactory()... 
edu.stanford.smi.protegex.owl.ui.widget.OWLUI.pickRDFProperties(Collection, String)
          use ProtegeUI.getSelectionDialogFactory()... 
edu.stanford.smi.protegex.owl.ui.widget.OWLUI.pickRDFProperty(Collection, String)
          use ProtegeUI.getSelectionDialogFactory()... 
edu.stanford.smi.protegex.owl.ui.widget.OWLUI.pickRDFResource(Collection)
          use ProtegeUI.getSelectionDialogFactory()... 
edu.stanford.smi.protegex.owl.ui.widget.OWLUI.pickRDFResourceFromCollection(Collection, String)
          use ProtegeUI.getSelectionDialogFactory()... 
edu.stanford.smi.protegex.owl.ui.widget.OWLUI.pickRDFResources(Collection)
          use ProtegeUI.getSelectionDialogFactory()... 
edu.stanford.smi.protegex.owl.ui.widget.OWLUI.pickRDFResources(Collection, boolean)
          use ProtegeUI.getSelectionDialogFactory()... 
edu.stanford.smi.protegex.owl.ui.widget.OWLUI.pickRDFSNamedClass(OWLModel, Collection, String)
          use ProtegeUI.getSelectionDialogFactory()... 
edu.stanford.smi.protegex.owl.ui.widget.OWLUI.pickRDFSNamedClass(OWLModel, String)
          use ProtegeUI.getSelectionDialogFactory()... 
edu.stanford.smi.protegex.owl.ui.widget.OWLUI.pickRDFSNamedClasses(OWLModel, String)
          use ProtegeUI.getSelectionDialogFactory()... 
edu.stanford.smi.protegex.owl.jena.Jena.prepareWriter(RDFWriter, String, String)
          - Use Jena.prepareWriter(RDFWriter writer, String language, String namespace, String xmlBase) 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.removeClsListener(Cls, ClsListener)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.removeClsListener(ClsListener)
            
edu.stanford.smi.protegex.owl.model.ProtegeCls.removeClsListener(ClsListener)
            
edu.stanford.smi.protegex.owl.model.ProtegeCls.removeDirectSuperclass(Cls)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.removeDirectSuperclass(Cls, Cls)
            
edu.stanford.smi.protegex.owl.model.ProtegeSlot.removeDirectSuperslot(Slot)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.removeDirectSuperslot(Slot, Slot)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.removeDirectTemplateSlot(Cls, Slot)
            
edu.stanford.smi.protegex.owl.model.ProtegeCls.removeDirectTemplateSlot(Slot)
            
edu.stanford.smi.protegex.owl.model.ProtegeInstance.removeDirectType(Cls)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.removeDirectType(Instance, Cls)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.removeFacetListener(Facet, FacetListener)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.removeFacetListener(FacetListener)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.removeFrameListener(Frame, FrameListener)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.removeFrameListener(FrameListener)
            
edu.stanford.smi.protegex.owl.model.ProtegeInstance.removeFrameListener(FrameListener)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.removeFrameStore(FrameStore)
          internal Protege detail 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.removeInstanceListener(Instance, InstanceListener)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.removeInstanceListener(InstanceListener)
            
edu.stanford.smi.protegex.owl.model.ProtegeInstance.removeInstanceListener(InstanceListener)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.removeJavaLoadPackage(String)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.removeKnowledgeBaseListener(KnowledgeBaseListener)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.removeOwnSlotValue(Frame, Slot, Object)
            
edu.stanford.smi.protegex.owl.model.ProtegeInstance.removeOwnSlotValue(Slot, Object)
            
edu.stanford.smi.protegex.owl.model.ProtegeSlot.removeSlotListener(SlotListener)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.removeSlotListener(SlotListener)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.removeSlotListener(Slot, SlotListener)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.removeTemplateFacetOverrides(Cls, Slot)
          not supported in OWL 
edu.stanford.smi.protegex.owl.model.ProtegeCls.removeTemplateFacetOverrides(Slot)
          no OWL equivalent 
edu.stanford.smi.protegex.owl.jena.Jena.renameResource(Resource, String, Model)
          this has a bug (it does not rename the resource in all models) - use the other renameResource method instead 
edu.stanford.smi.protegex.owl.jena.Jena.renameResourceInModel(Model, Resource, Resource)
          wrong 
edu.stanford.smi.protegex.owl.model.event.ModelAdapter.resourceNameChanged(RDFResource, String)
          Use ModelAdapter.resourceReplaced(RDFResource, RDFResource, String) 
edu.stanford.smi.protegex.owl.jena.JenaOWLModel.save(File, OntModel, String, String)
          -Use save(File file, OntModel ontModel, String language, String namespace, String xmlBase) 
edu.stanford.smi.protegex.owl.jena.JenaOWLModel.save(OutputStream, String, Collection)
          please use the version with the URIs or access the OntModel directly 
edu.stanford.smi.protegex.owl.jena.JenaOWLModel.save(OutputStream, String, Collection, OntModel)
          please use the version with the URIs or access the OntModel directly 
edu.stanford.smi.protegex.owl.jena.JenaOWLModel.saveModel(OutputStream, Model, String, String)
          Use 
edu.stanford.smi.protegex.owl.model.ProtegeCls.setAbstract(boolean)
          no OWL equivalent 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.setAbstract(Cls, boolean)
          not supported in OWL 
edu.stanford.smi.protegex.owl.model.ProtegeSlot.setAllowedClses(Collection)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.setAllowedClses(Slot, Collection)
            
edu.stanford.smi.protegex.owl.model.ProtegeSlot.setAllowedParents(Collection)
          set the value of the protege:allowedParents property directly 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.setAllowedParents(Slot, Collection)
          not supported in OWL 
edu.stanford.smi.protegex.owl.model.ProtegeSlot.setAllowedValues(Collection)
          set an OWLDataRange as range 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.setAllowedValues(Slot, Collection)
          not supported in OWL 
edu.stanford.smi.protegex.owl.model.ProtegeSlot.setAllowsMultipleValues(boolean)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.setAllowsMultipleValues(Slot, boolean)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.setArgumentCheckingEnabled(boolean)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeSlot.setAssociatedFacet(Facet)
          no OWL equivalent 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.setAssociatedFacet(Slot, Facet)
          not supported in OWL 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.setAssociatedSlot(Facet, Slot)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.setAutoUpdateFacetValues(boolean)
          not supported in OWL 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.setBuildString(String)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.setCallCachingEnabled(boolean)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.setChanged(boolean)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.setChangeMonitorEnabled(boolean)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.setCleanDispatchEnabled(boolean)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.setDefaultClsMetaCls(Cls)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.setDefaultFacetMetaCls(Cls)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.setDefaultSlotMetaCls(Cls)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeSlot.setDefaultValues(Collection)
          no OWL equivalent 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.setDefaultValues(Slot, Collection)
          not supported in OWL 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.setDirectBrowserSlot(Cls, Slot)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.setDirectBrowserSlotPattern(Cls, BrowserSlotPattern)
            
edu.stanford.smi.protegex.owl.model.ProtegeInstance.setDirectOwnSlotValue(Slot, Object)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.setDirectOwnSlotValues(Frame, Slot, Collection)
            
edu.stanford.smi.protegex.owl.model.ProtegeInstance.setDirectOwnSlotValues(Slot, Collection)
            
edu.stanford.smi.protegex.owl.model.ProtegeInstance.setDirectType(Cls)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.setDirectType(Instance, Cls)
            
edu.stanford.smi.protegex.owl.model.ProtegeCls.setDirectTypeOfSubclasses(Cls)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.setDirectTypeOfSubclasses(Cls, Cls)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeSlot.setDirectTypeOfSubslots(Cls)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.setDirectTypeOfSubslots(Slot, Cls)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeInstance.setDirectTypes(Collection)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.setDirectTypes(Instance, Collection)
            
edu.stanford.smi.protegex.owl.model.ProtegeInstance.setDocumentation(Collection)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.setDocumentation(Frame, Collection)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.setDocumentation(Frame, String)
            
edu.stanford.smi.protegex.owl.model.ProtegeSlot.setDocumentation(String)
            
edu.stanford.smi.protegex.owl.model.ProtegeInstance.setDocumentation(String)
            
edu.stanford.smi.protegex.owl.ui.cls.AssertedClassesPanel.setExpandedCls(Cls, boolean)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.setFacetCheckingEnabled(boolean)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.setFrameFactory(FrameFactory)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.setFrameNamePrefix(String)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.setFrameNameValidator(FrameNameValidator)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.setGenerateDeletingFrameEventsEnabled(boolean)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeInstance.setIncluded(boolean)
          this will be refactored into multiple imports 
edu.stanford.smi.protegex.owl.model.ProtegeSlot.setInverseSlot(Slot)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.setInverseSlot(Slot, Slot)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.setJournalingEnabled(boolean)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeSlot.setMaximumCardinality(int)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.setMaximumCardinality(Slot, int)
            
edu.stanford.smi.protegex.owl.model.ProtegeSlot.setMaximumValue(Number)
          no OWL equivalent 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.setMaximumValue(Slot, Number)
          not supported in OWL 
edu.stanford.smi.protegex.owl.model.ProtegeSlot.setMinimumCardinality(int)
          no OWL equivalent 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.setMinimumCardinality(Slot, int)
          not supported in OWL 
edu.stanford.smi.protegex.owl.model.ProtegeSlot.setMinimumValue(Number)
          no OWL equivalent 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.setMinimumValue(Slot, Number)
          not supported in OWL 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.setName(String)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.setNextFrameNumber(int)
          not needed 
edu.stanford.smi.protegex.owl.model.OWLEnumeratedClass.setOneOfValues(Collection)
          use setOneOf instead 
edu.stanford.smi.protegex.owl.database.CreateOWLDatabaseFromFileProjectPlugin.setOntologyFileURI(String)
          Use CreateOWLDatabaseFromFileProjectPlugin.setOntologyInputSource(URI) 
edu.stanford.smi.protegex.owl.ui.metadatatab.OWLMetadataTab.setOntologyInstance(OWLOntology)
            
edu.stanford.smi.protegex.owl.jena.Jena.setOntPolicyFilePath(Project, String)
            
edu.stanford.smi.protegex.owl.model.ProtegeInstance.setOwnFacetValue(Slot, Facet, Object)
          no OWL equivalent 
edu.stanford.smi.protegex.owl.model.ProtegeInstance.setOwnFacetValues(Slot, Facet, Collection)
          no OWL equivalent 
edu.stanford.smi.protegex.owl.model.ProtegeInstance.setOwnSlotValue(Slot, Object)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.setOwnSlotValues(Frame, Slot, Collection)
            
edu.stanford.smi.protegex.owl.model.ProtegeInstance.setOwnSlotValues(Slot, Collection)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.setPollForEvents(boolean)
          not needed 
edu.stanford.smi.protegex.owl.ui.cls.OWLSubclassPane.setSelectedCls(Cls)
            
edu.stanford.smi.protegex.owl.ui.cls.AssertedClassesPanel.setSelectedCls(Cls)
            
edu.stanford.smi.protegex.owl.ui.individuals.OWLIndividualsTab.setSelectedCls(Cls)
            
edu.stanford.smi.protegex.owl.ui.individuals.IndividualsTabClassesPanel.setSelectedCls(Cls)
            
edu.stanford.smi.protegex.owl.ui.cls.OWLClassesTab.setSelectedCls(OWLNamedClass)
          please replace with the one with RDFSNamedClass please 
edu.stanford.smi.protegex.owl.ui.cls.OWLSubclassPane.setSelectedClses(Collection)
            
edu.stanford.smi.protegex.owl.ui.individuals.OWLIndividualsTab.setSelectedInstance(Instance)
            
edu.stanford.smi.protegex.owl.ui.properties.OWLPropertiesTab.setSelectedSlot(OWLProperty)
            
edu.stanford.smi.protegex.owl.ui.individuals.AssertedInstancesListPanel.setShowDisplaySlotPanel(boolean)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.setTemplateFacetValue(Cls, Slot, Facet, Object)
          not supported by OWL 
edu.stanford.smi.protegex.owl.model.ProtegeCls.setTemplateFacetValue(Slot, Facet, Object)
          no OWL equivalent 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.setTemplateFacetValues(Cls, Slot, Facet, Collection)
          not supported by OWL 
edu.stanford.smi.protegex.owl.model.ProtegeCls.setTemplateFacetValues(Slot, Facet, Collection)
          no OWL equivalent 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.setTemplateSlotAllowedClses(Cls, Slot, Collection)
          not supported by OWL 
edu.stanford.smi.protegex.owl.model.ProtegeCls.setTemplateSlotAllowedClses(Slot, Collection)
          no OWL equivalent 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.setTemplateSlotAllowedParents(Cls, Slot, Collection)
          not supported by OWL 
edu.stanford.smi.protegex.owl.model.ProtegeCls.setTemplateSlotAllowedParents(Slot, Collection)
          no OWL equivalent 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.setTemplateSlotAllowedValues(Cls, Slot, Collection)
          not supported by OWL 
edu.stanford.smi.protegex.owl.model.ProtegeCls.setTemplateSlotAllowedValues(Slot, Collection)
          no OWL equivalent 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.setTemplateSlotAllowsMultipleValues(Cls, Slot, boolean)
          not supported by OWL 
edu.stanford.smi.protegex.owl.model.ProtegeCls.setTemplateSlotAllowsMultipleValues(Slot, boolean)
          no OWL equivalent 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.setTemplateSlotDefaultValues(Cls, Slot, Collection)
          not supported by OWL 
edu.stanford.smi.protegex.owl.model.ProtegeCls.setTemplateSlotDefaultValues(Slot, Collection)
          no OWL equivalent 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.setTemplateSlotDocumentation(Cls, Slot, Collection)
          not supported by OWL 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.setTemplateSlotDocumentation(Cls, Slot, String)
          not supported by OWL 
edu.stanford.smi.protegex.owl.model.ProtegeCls.setTemplateSlotDocumentation(Slot, Collection)
          no OWL equivalent 
edu.stanford.smi.protegex.owl.model.ProtegeCls.setTemplateSlotDocumentation(Slot, String)
          no OWL equivalent 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.setTemplateSlotMaximumCardinality(Cls, Slot, int)
          not supported by OWL 
edu.stanford.smi.protegex.owl.model.ProtegeCls.setTemplateSlotMaximumCardinality(Slot, int)
          no OWL equivalent 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.setTemplateSlotMaximumValue(Cls, Slot, Number)
          not supported by OWL 
edu.stanford.smi.protegex.owl.model.ProtegeCls.setTemplateSlotMaximumValue(Slot, Number)
          no OWL equivalent 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.setTemplateSlotMinimumCardinality(Cls, Slot, int)
          not supported by OWL 
edu.stanford.smi.protegex.owl.model.ProtegeCls.setTemplateSlotMinimumCardinality(Slot, int)
          no OWL equivalent 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.setTemplateSlotMinimumValue(Cls, Slot, Number)
          not supported by OWL 
edu.stanford.smi.protegex.owl.model.ProtegeCls.setTemplateSlotMinimumValue(Slot, Number)
          no OWL equivalent 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.setTemplateSlotValue(Cls, Slot, Object)
          not supported by OWL 
edu.stanford.smi.protegex.owl.model.ProtegeCls.setTemplateSlotValue(Slot, Object)
          no OWL equivalent 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.setTemplateSlotValues(Cls, Slot, Collection)
          not supported by OWL 
edu.stanford.smi.protegex.owl.model.ProtegeCls.setTemplateSlotValues(Slot, Collection)
          no OWL equivalent 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.setTemplateSlotValueType(Cls, Slot, ValueType)
          not supported by OWL 
edu.stanford.smi.protegex.owl.model.ProtegeCls.setTemplateSlotValueType(Slot, ValueType)
          no OWL equivalent 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.setValueChecking(boolean)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeSlot.setValues(Collection)
          no OWL equivalent 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.setValues(Slot, Collection)
          not supported in OWL 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.setValueType(Slot, ValueType)
            
edu.stanford.smi.protegex.owl.model.ProtegeSlot.setValueType(ValueType)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.setVersionString(String)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeInstance.shallowCopy(KnowledgeBase, Map)
          not needed 
edu.stanford.smi.protegex.owl.ui.cls.OWLClassesTab.showCls(Cls)
            
edu.stanford.smi.protegex.owl.ui.widget.OWLUI.showConfirmDialog(Project, String, String)
          use ProtegeUI.getModalDialogFactory()... 
edu.stanford.smi.protegex.owl.ui.widget.OWLUI.showConfirmDialog(String, String)
          use ProtegeUI.getModalDialogFactory()... 
edu.stanford.smi.protegex.owl.ui.widget.OWLUI.showErrorMessageDialog(Component, String)
          use ProtegeUI.getModalDialogFactory()... 
edu.stanford.smi.protegex.owl.ui.widget.OWLUI.showErrorMessageDialog(OWLModel, String)
          use ProtegeUI.getModalDialogFactory()... 
edu.stanford.smi.protegex.owl.ui.widget.OWLUI.showErrorMessageDialog(Project, String)
          use ProtegeUI.getModalDialogFactory()... 
edu.stanford.smi.protegex.owl.ui.widget.OWLUI.showErrorMessageDialog(Project, String, String)
          use ProtegeUI.getModalDialogFactory()... 
edu.stanford.smi.protegex.owl.ui.widget.OWLUI.showErrorMessageDialog(String)
          use ProtegeUI.getModalDialogFactory()... 
edu.stanford.smi.protegex.owl.ui.widget.OWLUI.showErrorMessageDialog(String, String)
          use ProtegeUI.getModalDialogFactory()... 
edu.stanford.smi.protegex.owl.ui.results.ResultsPanelManager.showHostInstance(Instance)
          use showHostResource instead 
edu.stanford.smi.protegex.owl.ui.results.ResultsPanel.showHostInstance(Instance)
          use showHostResource 
edu.stanford.smi.protegex.owl.ui.widget.OWLUI.showMessageDialog(Component, String)
          use ProtegeUI.getModalDialogFactory()... 
edu.stanford.smi.protegex.owl.ui.widget.OWLUI.showMessageDialog(OWLModel, String)
          use ProtegeUI.getModalDialogFactory()... 
edu.stanford.smi.protegex.owl.ui.widget.OWLUI.showMessageDialog(OWLModel, String, String, int)
          use ProtegeUI.getModalDialogFactory()... 
edu.stanford.smi.protegex.owl.ui.widget.OWLUI.showMessageDialog(Project, String)
          use ProtegeUI.getModalDialogFactory()... 
edu.stanford.smi.protegex.owl.ui.widget.OWLUI.showMessageDialog(Project, String, String, int)
          use ProtegeUI.getModalDialogFactory()... 
edu.stanford.smi.protegex.owl.ui.widget.OWLUI.showMessageDialog(String)
          use ProtegeUI.getModalDialogFactory()... 
edu.stanford.smi.protegex.owl.ui.widget.OWLUI.showMessageDialog(String, String, int)
          use ProtegeUI.getModalDialogFactory()... 
edu.stanford.smi.protegex.owl.model.event.ProtegeKnowledgeBaseListener.slotCreated(KnowledgeBaseEvent)
            
edu.stanford.smi.protegex.owl.model.event.ModelAdapter.slotCreated(KnowledgeBaseEvent)
            
edu.stanford.smi.protegex.owl.model.event.ProtegeKnowledgeBaseListener.slotDeleted(KnowledgeBaseEvent)
            
edu.stanford.smi.protegex.owl.model.event.ModelAdapter.slotDeleted(KnowledgeBaseEvent)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.startJournaling(URI)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.stopJournaling()
          not needed 
edu.stanford.smi.protegex.owl.model.event.ProtegeClsListener.templateFacetAdded(ClsEvent)
          no OWL equivalent 
edu.stanford.smi.protegex.owl.model.event.ClassAdapter.templateFacetAdded(ClsEvent)
            
edu.stanford.smi.protegex.owl.model.event.ProtegeClsListener.templateFacetRemoved(ClsEvent)
          no OWL equivalent 
edu.stanford.smi.protegex.owl.model.event.ClassAdapter.templateFacetRemoved(ClsEvent)
            
edu.stanford.smi.protegex.owl.model.event.ProtegeClsListener.templateFacetValueChanged(ClsEvent)
          no OWL equivalent 
edu.stanford.smi.protegex.owl.model.event.ClassAdapter.templateFacetValueChanged(ClsEvent)
            
edu.stanford.smi.protegex.owl.model.event.ProtegeClsListener.templateSlotAdded(ClsEvent)
            
edu.stanford.smi.protegex.owl.model.event.ClassAdapter.templateSlotAdded(ClsEvent)
            
edu.stanford.smi.protegex.owl.model.event.ProtegeSlotListener.templateSlotClsAdded(SlotEvent)
            
edu.stanford.smi.protegex.owl.model.event.PropertyAdapter.templateSlotClsAdded(SlotEvent)
            
edu.stanford.smi.protegex.owl.model.event.ProtegeSlotListener.templateSlotClsRemoved(SlotEvent)
            
edu.stanford.smi.protegex.owl.model.event.PropertyAdapter.templateSlotClsRemoved(SlotEvent)
            
edu.stanford.smi.protegex.owl.model.event.ProtegeClsListener.templateSlotRemoved(ClsEvent)
            
edu.stanford.smi.protegex.owl.model.event.ClassAdapter.templateSlotRemoved(ClsEvent)
            
edu.stanford.smi.protegex.owl.model.event.ProtegeClsListener.templateSlotValueChanged(ClsEvent)
          no OWL equivalent 
edu.stanford.smi.protegex.owl.model.event.ClassAdapter.templateSlotValueChanged(ClsEvent)
            
edu.stanford.smi.protegex.owl.model.event.ProtegeFrameListener.visibilityChanged(FrameEvent)
            
edu.stanford.smi.protegex.owl.model.event.PropertyValueAdapter.visibilityChanged(FrameEvent)
            
 

Deprecated Constructors
edu.stanford.smi.protegex.owl.ui.cls.AssertedClassesPanel(Project, HierarchyManager)
            
edu.stanford.smi.protegex.owl.ui.cls.OWLSubclassPane(OWLModel, Action, Cls, Action)
            
edu.stanford.smi.protegex.owl.ui.properties.OWLSubpropertyPane(Project)
          the other constructor is better 
edu.stanford.smi.protegex.owl.ui.properties.OWLSuperpropertiesPanel(OWLSubpropertyPane, Project)
            
edu.stanford.smi.protegex.owl.ui.results.ResultsPanel()
          please use the other constructor 
 


Protégé-OWL 3.4.8

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Copyright (c) 1998-2012 Stanford University.