Protégé-OWL 3.3.1

Deprecated API


Contents
Deprecated Interfaces
edu.stanford.smi.protegex.owl.swrl.model.SWRLConstants
          Is this still needed? 
 

Deprecated Classes
edu.stanford.smi.protegex.owl.ui.components.triples.DeleteValueAction
          should be deleted 
edu.stanford.smi.protegex.owl.ui.existential.Existential
          This class should not be used - it has been replaced with ExistentialFillerProvider 
edu.stanford.smi.protegex.owl.ui.metadata.NameDocumentationWidget
          no longer encouraged 
edu.stanford.smi.protegex.owl.compactparser.OWLCompactParser
          Moved to model.classparser.compact package - please update quickly as this class will be deleted shortly 
edu.stanford.smi.protegex.owl.ui.metadata.OWLMetadataWidget
            
edu.stanford.smi.protegex.owl.ui.testing.OWLTestSettingsAction
          use OWLSettingsPanel directly (currently within PreferencesPanel) 
edu.stanford.smi.protegex.owl.ui.metadata.RDFResourceNameWidget
          is no longer needed because the name is now shown in the header 
edu.stanford.smi.protegex.owl.ui.widget.ResourceListWidget
          no longer really needed 
 

Deprecated Fields
edu.stanford.smi.protegex.owl.model.XSPNames.BASE
          use the helper method XSPNames.get(OWLModel owlModel, int resourceID) 
edu.stanford.smi.protegex.owl.model.OWLNames.CLASSIFICATION_STATUS_INCONSISTENT
          Please use the isConsistent method on OWLNamedClass. 
edu.stanford.smi.protegex.owl.ui.widget.OWLUI.CODE_MENU
          use constant from AbstractOWLModelAction 
edu.stanford.smi.protegex.owl.ui.resourcedisplay.ResourceDisplay.DEFAULT_TYPE_CLS
            
edu.stanford.smi.protegex.owl.ui.resourcedisplay.ResourceDisplay.DEFAULT_TYPE_INSTANCE
            
edu.stanford.smi.protegex.owl.ui.resourcedisplay.ResourceDisplay.DEFAULT_TYPE_SLOT
            
edu.stanford.smi.protegex.owl.model.OWLNames.Slot.EQUIVALENT_PROPERTIES
          use EQUIVALENT_PROPERTY instead 
edu.stanford.smi.protegex.owl.model.XSPNames.FRACTION_DIGITS
          use the helper method XSPNames.get(int resourceID) 
edu.stanford.smi.protegex.owl.ui.cls.ChangeMetaclassOfSubclassesAction.GROUP
          use ChangeMetaclassAction.GROUP 
edu.stanford.smi.protegex.owl.model.RDFSNames.Slot.LABELS
          use LABEL 
edu.stanford.smi.protegex.owl.model.XSPNames.LENGTH
          use the helper method XSPNames.get(int resourceID) 
edu.stanford.smi.protegex.owl.inference.dig.reasoner.DefaultDIGReasoner.log
          Use DIGReasonerPreferences to set logging 
edu.stanford.smi.protegex.owl.model.XSPNames.MAX_EXCLUSIVE
          use the helper method XSPNames.get(int resourceID) 
edu.stanford.smi.protegex.owl.model.XSPNames.MAX_INCLUSIVE
          use the helper method XSPNames.get(int resourceID) 
edu.stanford.smi.protegex.owl.model.XSPNames.MAX_LENGTH
          use the helper method XSPNames.get(int resourceID) 
edu.stanford.smi.protegex.owl.model.XSPNames.MIN_EXCLUSIVE
          use the helper method XSPNames.get(int resourceID) 
edu.stanford.smi.protegex.owl.model.XSPNames.MIN_INCLUSIVE
          use the helper method XSPNames.get(int resourceID) 
edu.stanford.smi.protegex.owl.model.XSPNames.MIN_LENGTH
          use the helper method XSPNames.get(int resourceID) 
edu.stanford.smi.protegex.owl.ui.widget.OWLUI.OWL_MENU
          use constant from AbstractOWLModelAction 
edu.stanford.smi.protegex.owl.model.XSPNames.PATTERN
          use the helper method XSPNames.get(int resourceID) 
edu.stanford.smi.protegex.owl.model.XSPNames.PREFIX
          use XSPNames.DEFAULT_PREFIX 
edu.stanford.smi.protegex.owl.jena.Jena.ROOT_FOLDER
          use ProtegeOWL.PLUGIN_FOLDER instead 
edu.stanford.smi.protegex.owl.ui.widget.OWLUI.TOOLS_MENU
          use constant from AbstractOWLModelAction 
edu.stanford.smi.protegex.owl.model.XSPNames.TOTAL_DIGITS
          use the helper method XSPNames.get(int resourceID) 
 

Deprecated Methods
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.addClsListener(Cls, ClsListener)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.addClsListener(ClsListener)
            
edu.stanford.smi.protegex.owl.model.ProtegeCls.addClsListener(ClsListener)
            
edu.stanford.smi.protegex.owl.model.ProtegeCls.addDirectSuperclass(Cls)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.addDirectSuperclass(Cls, Cls)
            
edu.stanford.smi.protegex.owl.model.ProtegeSlot.addDirectSuperslot(Slot)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.addDirectSuperslot(Slot, Slot)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.addDirectTemplateSlot(Cls, Slot)
            
edu.stanford.smi.protegex.owl.model.ProtegeCls.addDirectTemplateSlot(Slot)
            
edu.stanford.smi.protegex.owl.model.ProtegeInstance.addDirectType(Cls)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.addDirectType(Instance, Cls)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.addFacetListener(Facet, FacetListener)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.addFacetListener(FacetListener)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.addFrameListener(Frame, FrameListener)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.addFrameListener(FrameListener)
            
edu.stanford.smi.protegex.owl.model.ProtegeInstance.addFrameListener(FrameListener)
            
edu.stanford.smi.protegex.owl.model.OWLOntology.addImports(RDFExternalResource)
          use version with RDFUntypedResource instead 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.addInstance(Instance, String, Cls, boolean)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.addInstanceListener(Instance, InstanceListener)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.addInstanceListener(InstanceListener)
            
edu.stanford.smi.protegex.owl.model.ProtegeInstance.addInstanceListener(InstanceListener)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.addKnowledgeBaseListener(KnowledgeBaseListener)
            
edu.stanford.smi.protegex.owl.model.ProtegeInstance.addOwnFacetValue(Slot, Facet, Object)
          no OWL equivalent 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.addOwnSlotValue(Frame, Slot, Object)
            
edu.stanford.smi.protegex.owl.model.ProtegeInstance.addOwnSlotValue(Slot, Object)
            
edu.stanford.smi.protegex.owl.ui.results.ResultsPanelManager.addResultsPanel(ResultsPanel, boolean)
          use the version with the owlModel argument 
edu.stanford.smi.protegex.owl.model.ProtegeSlot.addSlotListener(SlotListener)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.addSlotListener(SlotListener)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.addSlotListener(Slot, SlotListener)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.addTemplateFacetValue(Cls, Slot, Facet, Object)
          not supported in OWL 
edu.stanford.smi.protegex.owl.model.ProtegeCls.addTemplateFacetValue(Slot, Facet, Object)
          no OWL equivalent 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.addTemplateSlotValue(Cls, Slot, Object)
          not supported in OWL 
edu.stanford.smi.protegex.owl.model.ProtegeCls.addTemplateSlotValue(Slot, Object)
          no OWL equivalent 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.areValidOwnSlotValues(Frame, Slot, Collection)
          this method is based on facets which are not supported in OWL 
edu.stanford.smi.protegex.owl.model.ProtegeInstance.areValidOwnSlotValues(Slot, Collection)
          not needed 
edu.stanford.smi.protegex.owl.model.event.ProtegeFrameListener.browserTextChanged(FrameEvent)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.clearAllListeners()
          whatever this does 
edu.stanford.smi.protegex.owl.ui.results.ResultsPanelManager.closeResultsPanel(ResultsPanel)
          use the other version instead 
edu.stanford.smi.protegex.owl.model.event.ProtegeKnowledgeBaseListener.clsCreated(KnowledgeBaseEvent)
            
edu.stanford.smi.protegex.owl.model.event.ModelAdapter.clsCreated(KnowledgeBaseEvent)
            
edu.stanford.smi.protegex.owl.model.event.ProtegeKnowledgeBaseListener.clsDeleted(KnowledgeBaseEvent)
            
edu.stanford.smi.protegex.owl.model.event.ModelAdapter.clsDeleted(KnowledgeBaseEvent)
            
edu.stanford.smi.protegex.owl.model.impl.OWLUtil.confirmSaveAndReload()
          use the version with project parameter instead 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.containsFrame(String)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeInstance.copy(KnowledgeBase, Map, boolean)
          not needed 
edu.stanford.smi.protegex.owl.model.impl.OWLUtil.createClone(Cls)
          use CloneFactory and ResourceCopier instead 
edu.stanford.smi.protegex.owl.model.impl.OWLUtil.createClone(OWLModel, String)
          use CloneFactory and ResourceCopier instead 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.createCls(FrameID, String, Collection, Collection, boolean)
          not needed in OWL 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.createCls(String, Collection)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.createCls(String, Collection, Cls)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.createCls(String, Collection, Cls, boolean)
          not needed in OWL 
edu.stanford.smi.protegex.owl.model.ProtegeCls.createDirectInstance(String)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.createFacet(String)
          no OWL equivalent 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.createFacet(String, Cls, boolean)
          no OWL equivalent 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.createInstance(FrameID, String, Cls, boolean)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.createInstance(FrameID, String, Collection, boolean)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.createInstance(String, Cls)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.createInstance(String, Cls, boolean)
          not needed 
edu.stanford.smi.protegex.owl.model.OWLModel.createOWLOntology(String, String)
          use the other createOWLOntology method instead 
edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel.createOWLOntology(String, String)
            
edu.stanford.smi.protegex.owl.model.OWLModel.createRDFExternalResource(String)
          use createRDFUntypedResource instead 
edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel.createRDFExternalResource(String)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.createSimpleInstance(FrameID, String, Collection, boolean)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.createSlot(String)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.createSlot(String, Cls)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.createSlot(String, Cls, boolean)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.createSlot(String, Cls, Collection, boolean)
            
edu.stanford.smi.protegex.owl.ui.cls.AssertedClassesPanel.createSubclassPane(Action, RDFSNamedClass, Action, Action)
            
edu.stanford.smi.protegex.owl.model.ProtegeInstance.deepCopy(KnowledgeBase, Map)
          not needed 
edu.stanford.smi.protegex.owl.model.event.ProtegeKnowledgeBaseListener.defaultClsMetaClsChanged(KnowledgeBaseEvent)
          not needed 
edu.stanford.smi.protegex.owl.model.event.ModelAdapter.defaultClsMetaClsChanged(KnowledgeBaseEvent)
            
edu.stanford.smi.protegex.owl.model.event.ProtegeKnowledgeBaseListener.defaultFacetMetaClsChanged(KnowledgeBaseEvent)
          not needed 
edu.stanford.smi.protegex.owl.model.event.ModelAdapter.defaultFacetMetaClsChanged(KnowledgeBaseEvent)
            
edu.stanford.smi.protegex.owl.model.event.ProtegeKnowledgeBaseListener.defaultSlotMetaClsChanged(KnowledgeBaseEvent)
          not needed 
edu.stanford.smi.protegex.owl.model.event.ModelAdapter.defaultSlotMetaClsChanged(KnowledgeBaseEvent)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.deleteCls(Cls)
            
edu.stanford.smi.protegex.owl.model.event.ProtegeFrameListener.deleted(FrameEvent)
          did not work in Protege anyway 
edu.stanford.smi.protegex.owl.model.event.PropertyValueAdapter.deleted(FrameEvent)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.deleteFacet(Facet)
          not needed in OWL 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.deleteFrame(Frame)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.deleteInstance(Instance)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.deleteSlot(Slot)
            
edu.stanford.smi.protegex.owl.model.event.ProtegeClsListener.directInstanceAdded(ClsEvent)
            
edu.stanford.smi.protegex.owl.model.event.ClassAdapter.directInstanceAdded(ClsEvent)
            
edu.stanford.smi.protegex.owl.model.event.ProtegeClsListener.directInstanceRemoved(ClsEvent)
            
edu.stanford.smi.protegex.owl.model.event.ClassAdapter.directInstanceRemoved(ClsEvent)
            
edu.stanford.smi.protegex.owl.model.event.ProtegeClsListener.directSubclassAdded(ClsEvent)
            
edu.stanford.smi.protegex.owl.model.event.ClassAdapter.directSubclassAdded(ClsEvent)
            
edu.stanford.smi.protegex.owl.model.event.ProtegeClsListener.directSubclassMoved(ClsEvent)
          not supported by OWL 
edu.stanford.smi.protegex.owl.model.event.ClassAdapter.directSubclassMoved(ClsEvent)
            
edu.stanford.smi.protegex.owl.model.event.ProtegeClsListener.directSubclassRemoved(ClsEvent)
            
edu.stanford.smi.protegex.owl.model.event.ProtegeSlotListener.directSubslotAdded(SlotEvent)
            
edu.stanford.smi.protegex.owl.model.event.PropertyAdapter.directSubslotAdded(SlotEvent)
            
edu.stanford.smi.protegex.owl.model.event.ProtegeSlotListener.directSubslotMoved(SlotEvent)
          not supported in OWL 
edu.stanford.smi.protegex.owl.model.event.PropertyAdapter.directSubslotMoved(SlotEvent)
            
edu.stanford.smi.protegex.owl.model.event.ProtegeSlotListener.directSubslotRemoved(SlotEvent)
            
edu.stanford.smi.protegex.owl.model.event.PropertyAdapter.directSubslotRemoved(SlotEvent)
            
edu.stanford.smi.protegex.owl.model.event.ProtegeClsListener.directSuperclassAdded(ClsEvent)
            
edu.stanford.smi.protegex.owl.model.event.ClassAdapter.directSuperclassAdded(ClsEvent)
            
edu.stanford.smi.protegex.owl.model.event.ProtegeClsListener.directSuperclassRemoved(ClsEvent)
            
edu.stanford.smi.protegex.owl.model.event.ClassAdapter.directSuperclassRemoved(ClsEvent)
            
edu.stanford.smi.protegex.owl.model.event.ProtegeSlotListener.directSuperslotAdded(SlotEvent)
            
edu.stanford.smi.protegex.owl.model.event.PropertyAdapter.directSuperslotAdded(SlotEvent)
            
edu.stanford.smi.protegex.owl.model.event.ProtegeSlotListener.directSuperslotRemoved(SlotEvent)
            
edu.stanford.smi.protegex.owl.model.event.PropertyAdapter.directSuperslotRemoved(SlotEvent)
            
edu.stanford.smi.protegex.owl.model.event.ResourceAdapter.directTypeAdded(InstanceEvent)
            
edu.stanford.smi.protegex.owl.model.event.ProtegeInstanceListener.directTypeAdded(InstanceEvent)
            
edu.stanford.smi.protegex.owl.model.event.ResourceAdapter.directTypeRemoved(InstanceEvent)
            
edu.stanford.smi.protegex.owl.model.event.ProtegeInstanceListener.directTypeRemoved(InstanceEvent)
            
edu.stanford.smi.protegex.owl.ui.resourcedisplay.ResourceDisplay.displayHostInstance(Instance)
            
edu.stanford.smi.protegex.owl.ui.cls.OWLClassesTab.ensureClsSelected(Cls, int)
            
edu.stanford.smi.protegex.owl.model.event.ProtegeKnowledgeBaseListener.facetCreated(KnowledgeBaseEvent)
          not needed 
edu.stanford.smi.protegex.owl.model.event.ModelAdapter.facetCreated(KnowledgeBaseEvent)
            
edu.stanford.smi.protegex.owl.model.event.ProtegeKnowledgeBaseListener.facetDeleted(KnowledgeBaseEvent)
          not needed 
edu.stanford.smi.protegex.owl.model.event.ModelAdapter.facetDeleted(KnowledgeBaseEvent)
            
edu.stanford.smi.protegex.owl.model.event.ProtegeKnowledgeBaseListener.frameNameChanged(KnowledgeBaseEvent)
            
edu.stanford.smi.protegex.owl.model.event.ModelAdapter.frameNameChanged(KnowledgeBaseEvent)
            
edu.stanford.smi.protegex.owl.model.ProtegeSlot.getAllowedClses()
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getAllowedClses(Slot)
            
edu.stanford.smi.protegex.owl.model.ProtegeSlot.getAllowedParents()
          set the value of the protege:allowedParents property directly 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getAllowedParents(Slot)
          not supported in OWL 
edu.stanford.smi.protegex.owl.model.ProtegeSlot.getAllowedValues()
          compare to OWLDataRange as range 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getAllowedValues(Slot)
            
edu.stanford.smi.protegex.owl.model.ProtegeSlot.getAllowsMultipleValues()
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getAllowsMultipleValues(Slot)
            
edu.stanford.smi.protegex.owl.model.OWLModel.getAnonymousRootCls()
          internal Protege detail 
edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel.getAnonymousRootCls()
            
edu.stanford.smi.protegex.owl.ui.conditions.ConditionsWidget.getAssertedConditionsWidget()
            
edu.stanford.smi.protegex.owl.model.ProtegeSlot.getAssociatedFacet()
          no OWL equivalent 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getAssociatedFacet(Slot)
          not supported in OWL 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getAssociatedSlot(Facet)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getBrowserText(Instance)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getCls(String)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getClsCount()
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getClses()
            
edu.stanford.smi.protegex.owl.ui.cls.OWLClassesTab.getClsesTab(Component)
          use getOWLClassesTab instead 
edu.stanford.smi.protegex.owl.compactparser.JavaCharStream.getColumn()
            
edu.stanford.smi.protegex.owl.model.classparser.compact.JavaCharStream.getColumn()
            
edu.stanford.smi.protegex.owl.model.classparser.dl.JavaCharStream.getColumn()
            
edu.stanford.smi.protegex.owl.model.classparser.manchester.JavaCharStream.getColumn()
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getCommandManager()
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeCls.getConcreteSubclasses()
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getCurrentUsers()
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getDefaultClsMetaCls()
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getDefaultFacetMetaCls()
          not supported in OWL 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getDefaultSlotMetaCls()
            
edu.stanford.smi.protegex.owl.model.ProtegeSlot.getDefaultValues()
          no OWL equivalent 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getDefaultValues(Slot)
          not supported in OWL 
edu.stanford.smi.protegex.owl.ui.icons.OWLIcons.getDefinedClsIcon()
          please access constant directly 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getDirectBrowserSlotPattern(Cls)
            
edu.stanford.smi.protegex.owl.model.ProtegeSlot.getDirectDomain()
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getDirectDomain(Slot)
            
edu.stanford.smi.protegex.owl.model.ProtegeCls.getDirectInstanceCount()
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getDirectInstanceCount(Cls)
            
edu.stanford.smi.protegex.owl.model.ProtegeCls.getDirectInstances()
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getDirectInstances(Cls)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getDirectlyOverriddenTemplateFacets(Cls, Slot)
          not supported in OWL 
edu.stanford.smi.protegex.owl.model.ProtegeCls.getDirectlyOverriddenTemplateFacets(Slot)
          no OWL equivalent 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getDirectlyOverriddenTemplateSlots(Cls)
          not supported in OWL 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getDirectOwnSlotValue(Frame, Slot)
            
edu.stanford.smi.protegex.owl.model.ProtegeInstance.getDirectOwnSlotValue(Slot)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getDirectOwnSlotValues(Frame, Slot)
            
edu.stanford.smi.protegex.owl.model.ProtegeInstance.getDirectOwnSlotValues(Slot)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getDirectOwnSlotValuesClosure(Frame, Slot)
          not needed 
edu.stanford.smi.protegex.owl.model.OWLNamedClass.getDirectRestrictions()
          will be deleted shortly, replaced with getRestrictions(false) 
edu.stanford.smi.protegex.owl.model.ProtegeCls.getDirectSubclassCount()
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getDirectSubclassCount(Cls)
            
edu.stanford.smi.protegex.owl.model.ProtegeCls.getDirectSubclasses()
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getDirectSubclasses(Cls)
            
edu.stanford.smi.protegex.owl.model.ProtegeSlot.getDirectSubslotCount()
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getDirectSubslotCount(Slot)
            
edu.stanford.smi.protegex.owl.model.ProtegeSlot.getDirectSubslots()
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getDirectSubslots(Slot)
            
edu.stanford.smi.protegex.owl.model.ProtegeCls.getDirectSuperclassCount()
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getDirectSuperclassCount(Cls)
            
edu.stanford.smi.protegex.owl.model.ProtegeCls.getDirectSuperclasses()
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getDirectSuperclasses(Cls)
            
edu.stanford.smi.protegex.owl.model.ProtegeSlot.getDirectSuperslotCount()
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getDirectSuperslotCount(Slot)
            
edu.stanford.smi.protegex.owl.model.ProtegeSlot.getDirectSuperslots()
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getDirectSuperslots(Slot)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getDirectTemplateFacetValues(Cls, Slot, Facet)
          not supported in OWL 
edu.stanford.smi.protegex.owl.model.ProtegeCls.getDirectTemplateFacetValues(Slot, Facet)
          no OWL equivalent 
edu.stanford.smi.protegex.owl.model.ProtegeCls.getDirectTemplateSlots()
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getDirectTemplateSlots(Cls)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getDirectTemplateSlotValues(Cls, Slot)
          not supported in OWL 
edu.stanford.smi.protegex.owl.model.ProtegeCls.getDirectTemplateSlotValues(Slot)
          no OWL equivalent 
edu.stanford.smi.protegex.owl.model.ProtegeInstance.getDirectType()
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getDirectType(Instance)
            
edu.stanford.smi.protegex.owl.model.ProtegeInstance.getDirectTypes()
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getDirectTypes(Instance)
            
edu.stanford.smi.protegex.owl.model.ProtegeSlot.getDocumentation()
            
edu.stanford.smi.protegex.owl.model.ProtegeInstance.getDocumentation()
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getDocumentation(Frame)
            
edu.stanford.smi.protegex.owl.model.ProtegeSlot.getDomain()
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getDomain(Slot)
            
edu.stanford.smi.protegex.owl.model.OWLAnonymousClass.getExpressionRoot()
          This routine performs very slowly. Usually this can be avoided by keeping track of how this OWLAnonymous class was constructed. Gets the root of the expression three where this is a part of. For example, if this is the !A in the expression (!A & B), then this method will return the OWLIntersectionClass (!A & B). 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getFacet(String)
          not supported in OWL 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getFacetCount()
          not supported in OWL 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getFacets()
          not supported in OWL 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getFrame(FrameID)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getFrame(String)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getFrameCount()
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getFrameCounts()
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getFrameCreationTimestamp(Frame)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getFrameCreator(Frame)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getFrameFactory()
            
edu.stanford.smi.protegex.owl.model.ProtegeInstance.getFrameID()
          Protege internal 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getFrameLastModificationTimestamp(Frame)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getFrameLastModifier(Frame)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getFrameNameMatches(String, int)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getFrameNamePrefix()
          not supported in OWL 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getFrames()
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getFrameStores()
          internal Protege detail 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getFramesWithValue(Slot, Facet, boolean, Object)
            
edu.stanford.smi.protegex.owl.model.ProtegeInstance.getIcon()
          use ProtegeUI.getIcon() instead 
edu.stanford.smi.protegex.owl.ui.conditions.ConditionsWidget.getInferredConditionsWidget()
            
edu.stanford.smi.protegex.owl.ui.widget.PropertyWidget.getInstance()
            
edu.stanford.smi.protegex.owl.ui.widget.AbstractPropertyWidget.getInstance()
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getInstance(String)
            
edu.stanford.smi.protegex.owl.model.ProtegeCls.getInstanceCount()
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getInstanceCount(Cls)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getInstances()
            
edu.stanford.smi.protegex.owl.model.ProtegeCls.getInstances()
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getInstances(Cls)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getInvalidFrameNameDescription(String, Frame)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getInvalidOwnSlotValuesText(Frame, Slot, Collection)
          not supported 
edu.stanford.smi.protegex.owl.model.ProtegeInstance.getInvalidOwnSlotValuesText(Slot, Collection)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getInvalidOwnSlotValueText(Frame, Slot, Object)
          not supported 
edu.stanford.smi.protegex.owl.model.ProtegeInstance.getInvalidOwnSlotValueText(Slot, Object)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeSlot.getInverseSlot()
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getInverseSlot(Slot)
            
edu.stanford.smi.protegex.owl.model.ProtegeInstance.getKnowledgeBase()
            
edu.stanford.smi.protegex.owl.ui.widget.AbstractTabWidget.getKnowledgeBase()
          use getOWLModel() instead 
edu.stanford.smi.protegex.owl.compactparser.JavaCharStream.getLine()
            
edu.stanford.smi.protegex.owl.model.classparser.compact.JavaCharStream.getLine()
            
edu.stanford.smi.protegex.owl.model.classparser.dl.JavaCharStream.getLine()
            
edu.stanford.smi.protegex.owl.model.classparser.manchester.JavaCharStream.getLine()
            
edu.stanford.smi.protegex.owl.model.framestore.OWLFrameStore.getLiteralValues(List)
          This method was moved into AbstractOWLModel 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getMatchingFrames(Slot, Facet, boolean, String, int)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getMatchingReferences(String, int)
            
edu.stanford.smi.protegex.owl.model.ProtegeSlot.getMaximumCardinality()
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getMaximumCardinality(Slot)
            
edu.stanford.smi.protegex.owl.model.ProtegeSlot.getMaximumValue()
          no OWL equivalent 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getMaximumValue(Slot)
          not supported in OWL 
edu.stanford.smi.protegex.owl.model.ProtegeSlot.getMinimumCardinality()
          no OWL equivalent 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getMinimumCardinality(Slot)
          not supported in OWL 
edu.stanford.smi.protegex.owl.model.ProtegeSlot.getMinimumValue()
          no OWL equivalent 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getMinimumValue(Slot)
          not supported in OWL 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getName()
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getName(Frame)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getNameSlot()
          not supported in OWL 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getNextFrameNumber()
          not needed 
edu.stanford.smi.protegex.owl.model.OWLEnumeratedClass.getOneOfValues()
          use getOneOf instead 
edu.stanford.smi.protegex.owl.model.OWLOntology.getOntologyURI()
          now getURI() can be used for that 
edu.stanford.smi.protegex.owl.jena.Jena.getOntPolicyFilePath(Project)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getOverriddenTemplateFacets(Cls, Slot)
          not supported in OWL 
edu.stanford.smi.protegex.owl.model.ProtegeCls.getOverriddenTemplateFacets(Slot)
          no OWL equivalent 
edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel.getOWLClasses()
          use getRDFSClasses instead 
edu.stanford.smi.protegex.owl.model.OWLModel.getOWLOntologyByURI(String)
          use #getOWLOntologyByURI(URI uri) DO NOT PASS IN THE URI OF AN UNRESOLVED IMPORT AS THIS WILL CAUSE A Class Cast Exception 
edu.stanford.smi.protegex.owl.model.ProtegeInstance.getOwnFacetValue(Slot, Facet)
          no OWL equivalent 
edu.stanford.smi.protegex.owl.model.ProtegeInstance.getOwnFacetValues(Slot, Facet)
          no OWL equivalent 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getOwnSlotAllowsMultipleValues(Frame, Slot)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeInstance.getOwnSlotAllowsMultipleValues(Slot)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getOwnSlotAndSubslotValues(Frame, Slot)
            
edu.stanford.smi.protegex.owl.model.ProtegeInstance.getOwnSlotAndSubslotValues(Slot)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getOwnSlotDefaultValues(Frame, Slot)
          not supported in OWL 
edu.stanford.smi.protegex.owl.model.ProtegeInstance.getOwnSlotDefaultValues(Slot)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getOwnSlotFacets(Frame, Slot)
          not supported in OWL 
edu.stanford.smi.protegex.owl.model.ProtegeInstance.getOwnSlotFacets(Slot)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getOwnSlotFacetValues(Frame, Slot, Facet)
          not supported in OWL 
edu.stanford.smi.protegex.owl.model.ProtegeInstance.getOwnSlotFacetValues(Slot, Facet)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeInstance.getOwnSlots()
          replaced but includes subproperties! 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getOwnSlots(Frame)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getOwnSlotValue(Frame, Slot)
            
edu.stanford.smi.protegex.owl.model.ProtegeInstance.getOwnSlotValue(Slot)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getOwnSlotValueCount(Frame, Slot)
            
edu.stanford.smi.protegex.owl.model.ProtegeInstance.getOwnSlotValueCount(Slot)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getOwnSlotValues(Frame, Slot)
            
edu.stanford.smi.protegex.owl.model.ProtegeInstance.getOwnSlotValues(Slot)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getOwnSlotValueType(Frame, Slot)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeInstance.getOwnSlotValueType(Slot)
          not needed 
edu.stanford.smi.protegex.owl.model.RDFSClass.getParsableExpression()
          not needed anymore 
edu.stanford.smi.protegex.owl.ui.code.OWLTextFormatter.getParseableString(String)
          Moved to CompactParserUtil - this method is no longer needed as it will be called by the parser on the fly 
edu.stanford.smi.protegex.owl.model.OWLModel.getRDFExternalResource(String)
          use getRDFUntypedResource instead 
edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel.getRDFExternalResource(String)
            
edu.stanford.smi.protegex.owl.model.OWLModel.getRDFExternalResourceClass()
          use getRDFUntypedResourcesClass 
edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel.getRDFExternalResourceClass()
            
edu.stanford.smi.protegex.owl.model.ProtegeInstance.getReachableSimpleInstances()
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getReachableSimpleInstances(Collection)
          not needed 
edu.stanford.smi.protegex.owl.inference.protegeowl.ReasonerManager.getReasoner(OWLModel, boolean)
          The createReasoner method should be used instead. 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getReferences(Object, int)
            
edu.stanford.smi.protegex.owl.ui.cls.OWLClassesTab.getResourceDisplay()
            
edu.stanford.smi.protegex.owl.ui.results.ResultsPanelManager.getResultsPanelByName(String)
          use the other version please 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getRootCls()
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getRootClses()
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getRootClsMetaCls()
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getRootFacetMetaCls()
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getRootSlotMetaCls()
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getRootSlots()
          not needed 
edu.stanford.smi.protegex.owl.ui.owltable.SymbolTable.getSelectedOWLInstance()
          renamed to getSelectedResource 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getSimpleInstanceCount()
          not needed 
edu.stanford.smi.protegex.owl.ui.widget.PropertyWidget.getSlot()
            
edu.stanford.smi.protegex.owl.ui.widget.AbstractPropertyWidget.getSlot()
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getSlot(String)
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getSlotCount()
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getSlots()
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getSlotValueLastModificationTimestamp(Frame, Slot, boolean)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getSlotValueLastModifier(Frame, Slot, boolean)
          not needed 
edu.stanford.smi.protegex.owl.model.ProtegeCls.getSubclasses()
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getSubclasses(Cls)
            
edu.stanford.smi.protegex.owl.model.ProtegeSlot.getSubslots()
            
edu.stanford.smi.protegex.owl.model.ProtegeKnowledgeBase.getSubslots(Slot)